Multiple sequence alignment - TraesCS6A01G263400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G263400 chr6A 100.000 4468 0 0 1 4468 486404817 486400350 0.000000e+00 8251.0
1 TraesCS6A01G263400 chr6A 90.909 55 1 2 2235 2289 499211690 499211740 2.230000e-08 71.3
2 TraesCS6A01G263400 chr6A 90.909 55 2 3 2239 2293 551863641 551863692 2.230000e-08 71.3
3 TraesCS6A01G263400 chr6D 93.613 1691 80 13 1905 3581 355242361 355244037 0.000000e+00 2499.0
4 TraesCS6A01G263400 chr6D 90.042 954 47 18 983 1909 355241392 355242324 0.000000e+00 1192.0
5 TraesCS6A01G263400 chr6D 85.061 743 68 23 3511 4217 162259674 162258939 0.000000e+00 717.0
6 TraesCS6A01G263400 chr6D 91.615 322 19 6 353 668 355241062 355241381 5.310000e-119 438.0
7 TraesCS6A01G263400 chr6B 93.333 780 33 4 2745 3511 522423305 522422532 0.000000e+00 1134.0
8 TraesCS6A01G263400 chr6B 87.755 931 75 22 983 1909 522425372 522424477 0.000000e+00 1051.0
9 TraesCS6A01G263400 chr6B 91.980 611 40 5 1913 2519 522424429 522423824 0.000000e+00 848.0
10 TraesCS6A01G263400 chr6B 89.520 229 16 7 2520 2743 522423749 522423524 2.630000e-72 283.0
11 TraesCS6A01G263400 chr6B 84.247 292 28 9 375 663 522425667 522425391 7.370000e-68 268.0
12 TraesCS6A01G263400 chr6B 93.617 47 3 0 2235 2281 238301095 238301141 2.230000e-08 71.3
13 TraesCS6A01G263400 chr6B 83.333 72 5 2 2235 2305 526104846 526104911 4.830000e-05 60.2
14 TraesCS6A01G263400 chr3A 88.380 938 65 26 3513 4417 710239126 710238200 0.000000e+00 1088.0
15 TraesCS6A01G263400 chr3A 88.994 318 35 0 669 986 119464446 119464129 1.160000e-105 394.0
16 TraesCS6A01G263400 chr3A 89.542 306 30 2 684 988 533993717 533993413 1.950000e-103 387.0
17 TraesCS6A01G263400 chr3A 95.833 48 2 0 304 351 709657952 709657905 1.330000e-10 78.7
18 TraesCS6A01G263400 chr5D 84.778 992 106 25 3511 4468 382968836 382967856 0.000000e+00 953.0
19 TraesCS6A01G263400 chr5D 83.144 706 78 25 3571 4246 397944012 397943318 1.370000e-169 606.0
20 TraesCS6A01G263400 chr5D 81.871 684 87 23 3592 4246 403759904 403760579 3.930000e-150 542.0
21 TraesCS6A01G263400 chr5D 89.510 286 25 3 1 282 525593067 525592783 1.530000e-94 357.0
22 TraesCS6A01G263400 chr5D 88.811 286 27 3 1 282 464611946 464612230 3.310000e-91 346.0
23 TraesCS6A01G263400 chr5D 92.308 52 4 0 2238 2289 486826716 486826767 1.720000e-09 75.0
24 TraesCS6A01G263400 chr5D 93.750 48 3 0 304 351 529523129 529523082 6.200000e-09 73.1
25 TraesCS6A01G263400 chr1D 82.644 991 112 36 3510 4466 392871351 392872315 0.000000e+00 822.0
26 TraesCS6A01G263400 chr1D 82.442 991 108 35 3511 4468 277076696 277075739 0.000000e+00 806.0
27 TraesCS6A01G263400 chr2D 82.287 988 123 33 3511 4466 521415188 521416155 0.000000e+00 808.0
28 TraesCS6A01G263400 chr2D 81.414 990 126 36 3511 4466 521416445 521417410 0.000000e+00 756.0
29 TraesCS6A01G263400 chr1A 82.129 996 106 31 3511 4466 64802931 64803894 0.000000e+00 787.0
30 TraesCS6A01G263400 chr1A 89.735 302 31 0 684 985 382256221 382255920 1.950000e-103 387.0
31 TraesCS6A01G263400 chr1A 88.421 285 29 3 1 282 367439262 367439545 1.540000e-89 340.0
32 TraesCS6A01G263400 chr1A 95.833 48 2 0 304 351 547025528 547025575 1.330000e-10 78.7
33 TraesCS6A01G263400 chrUn 82.085 988 104 39 3511 4466 45574452 45575398 0.000000e+00 776.0
34 TraesCS6A01G263400 chrUn 93.750 48 3 0 307 354 74720413 74720366 6.200000e-09 73.1
35 TraesCS6A01G263400 chr3D 81.370 993 114 28 3511 4468 141021841 141022797 0.000000e+00 743.0
36 TraesCS6A01G263400 chr3D 92.157 51 2 2 2232 2281 276745305 276745256 2.230000e-08 71.3
37 TraesCS6A01G263400 chr2A 82.653 882 89 33 3511 4357 468639528 468638676 0.000000e+00 723.0
38 TraesCS6A01G263400 chr2A 90.000 320 31 1 671 989 742757269 742756950 3.220000e-111 412.0
39 TraesCS6A01G263400 chr2A 90.970 299 27 0 684 982 65743632 65743930 1.940000e-108 403.0
40 TraesCS6A01G263400 chr2A 89.474 304 31 1 684 987 701231859 701231557 2.520000e-102 383.0
41 TraesCS6A01G263400 chr2A 88.660 291 27 4 1 287 166853660 166853948 2.560000e-92 350.0
42 TraesCS6A01G263400 chr2A 88.968 281 26 4 1 280 655850668 655850944 4.280000e-90 342.0
43 TraesCS6A01G263400 chr5A 80.159 1008 110 41 3510 4466 657299037 657298069 0.000000e+00 671.0
44 TraesCS6A01G263400 chr5A 95.833 48 2 0 304 351 52742698 52742651 1.330000e-10 78.7
45 TraesCS6A01G263400 chr5A 95.833 48 2 0 304 351 633019710 633019663 1.330000e-10 78.7
46 TraesCS6A01G263400 chr7D 81.038 886 111 32 3619 4460 220563899 220563027 0.000000e+00 652.0
47 TraesCS6A01G263400 chr7D 89.085 284 28 3 1 282 565209555 565209837 2.560000e-92 350.0
48 TraesCS6A01G263400 chr7D 95.833 48 2 0 304 351 593680754 593680707 1.330000e-10 78.7
49 TraesCS6A01G263400 chr7B 82.440 746 77 21 3511 4225 743551963 743551241 1.780000e-168 603.0
50 TraesCS6A01G263400 chr7B 92.157 51 4 0 304 354 196388078 196388028 6.200000e-09 73.1
51 TraesCS6A01G263400 chr7A 90.301 299 29 0 684 982 80533103 80532805 4.190000e-105 392.0
52 TraesCS6A01G263400 chr7A 89.967 299 30 0 684 982 148409633 148409335 1.950000e-103 387.0
53 TraesCS6A01G263400 chr7A 88.316 291 26 6 1 286 518749821 518749534 4.280000e-90 342.0
54 TraesCS6A01G263400 chr2B 88.889 306 34 0 684 989 46658664 46658969 1.170000e-100 377.0
55 TraesCS6A01G263400 chr2B 89.091 55 5 1 2228 2281 781810204 781810150 2.880000e-07 67.6
56 TraesCS6A01G263400 chr4D 89.236 288 24 3 1 282 293372562 293372276 1.980000e-93 353.0
57 TraesCS6A01G263400 chr4D 88.542 288 25 4 1 282 476862552 476862267 4.280000e-90 342.0
58 TraesCS6A01G263400 chr4D 92.308 52 1 2 2238 2289 484590070 484590118 2.230000e-08 71.3
59 TraesCS6A01G263400 chr5B 95.745 47 2 0 2235 2281 551504298 551504344 4.790000e-10 76.8
60 TraesCS6A01G263400 chr5B 89.286 56 2 4 2235 2289 295106090 295106038 2.880000e-07 67.6
61 TraesCS6A01G263400 chr1B 95.745 47 2 0 305 351 594003050 594003096 4.790000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G263400 chr6A 486400350 486404817 4467 True 8251.000000 8251 100.000000 1 4468 1 chr6A.!!$R1 4467
1 TraesCS6A01G263400 chr6D 355241062 355244037 2975 False 1376.333333 2499 91.756667 353 3581 3 chr6D.!!$F1 3228
2 TraesCS6A01G263400 chr6D 162258939 162259674 735 True 717.000000 717 85.061000 3511 4217 1 chr6D.!!$R1 706
3 TraesCS6A01G263400 chr6B 522422532 522425667 3135 True 716.800000 1134 89.367000 375 3511 5 chr6B.!!$R1 3136
4 TraesCS6A01G263400 chr3A 710238200 710239126 926 True 1088.000000 1088 88.380000 3513 4417 1 chr3A.!!$R4 904
5 TraesCS6A01G263400 chr5D 382967856 382968836 980 True 953.000000 953 84.778000 3511 4468 1 chr5D.!!$R1 957
6 TraesCS6A01G263400 chr5D 397943318 397944012 694 True 606.000000 606 83.144000 3571 4246 1 chr5D.!!$R2 675
7 TraesCS6A01G263400 chr5D 403759904 403760579 675 False 542.000000 542 81.871000 3592 4246 1 chr5D.!!$F1 654
8 TraesCS6A01G263400 chr1D 392871351 392872315 964 False 822.000000 822 82.644000 3510 4466 1 chr1D.!!$F1 956
9 TraesCS6A01G263400 chr1D 277075739 277076696 957 True 806.000000 806 82.442000 3511 4468 1 chr1D.!!$R1 957
10 TraesCS6A01G263400 chr2D 521415188 521417410 2222 False 782.000000 808 81.850500 3511 4466 2 chr2D.!!$F1 955
11 TraesCS6A01G263400 chr1A 64802931 64803894 963 False 787.000000 787 82.129000 3511 4466 1 chr1A.!!$F1 955
12 TraesCS6A01G263400 chrUn 45574452 45575398 946 False 776.000000 776 82.085000 3511 4466 1 chrUn.!!$F1 955
13 TraesCS6A01G263400 chr3D 141021841 141022797 956 False 743.000000 743 81.370000 3511 4468 1 chr3D.!!$F1 957
14 TraesCS6A01G263400 chr2A 468638676 468639528 852 True 723.000000 723 82.653000 3511 4357 1 chr2A.!!$R1 846
15 TraesCS6A01G263400 chr5A 657298069 657299037 968 True 671.000000 671 80.159000 3510 4466 1 chr5A.!!$R3 956
16 TraesCS6A01G263400 chr7D 220563027 220563899 872 True 652.000000 652 81.038000 3619 4460 1 chr7D.!!$R1 841
17 TraesCS6A01G263400 chr7B 743551241 743551963 722 True 603.000000 603 82.440000 3511 4225 1 chr7B.!!$R2 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.030235 GTCCATTTAATTCCCGCGCC 59.970 55.0 0.00 0.00 0.00 6.53 F
398 399 0.106268 AATGTGCCCAGGTCAACACA 60.106 50.0 0.00 0.00 46.16 3.72 F
399 400 0.106268 ATGTGCCCAGGTCAACACAA 60.106 50.0 6.07 0.00 45.33 3.33 F
1303 1314 0.107214 CTCCTCCTCTGCTCGTCTCT 60.107 60.0 0.00 0.00 0.00 3.10 F
1311 1322 0.170116 CTGCTCGTCTCTGGTGAGTC 59.830 60.0 0.00 0.00 40.98 3.36 F
1715 1750 0.392863 TCTGCACCATGAATCACGGG 60.393 55.0 0.00 0.51 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1322 0.111253 ACACAGGCTTTGGAGAAGGG 59.889 55.000 5.53 0.00 0.0 3.95 R
1523 1558 0.388659 GTCATGATCGAGCAGCTCCT 59.611 55.000 17.16 4.26 0.0 3.69 R
2117 2197 0.391263 GCAGACCAACTAACCCGGAG 60.391 60.000 0.73 0.00 0.0 4.63 R
3116 3501 1.153107 CTTCGCTGCCCCATCATCA 60.153 57.895 0.00 0.00 0.0 3.07 R
3161 3546 1.414158 CATCAGGAGTGGACGGGTAT 58.586 55.000 0.00 0.00 0.0 2.73 R
3585 3974 0.105224 TGCGGAGACTGTTTTCGGAA 59.895 50.000 0.95 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.563427 GCACGAGGCTTGCCTTTC 59.437 61.111 15.92 3.30 40.25 2.62
22 23 2.982744 GCACGAGGCTTGCCTTTCC 61.983 63.158 15.92 2.28 40.25 3.13
23 24 2.034221 ACGAGGCTTGCCTTTCCC 59.966 61.111 15.92 1.92 0.00 3.97
24 25 3.127533 CGAGGCTTGCCTTTCCCG 61.128 66.667 15.92 10.50 0.00 5.14
25 26 2.751837 GAGGCTTGCCTTTCCCGG 60.752 66.667 15.92 0.00 0.00 5.73
26 27 3.256960 AGGCTTGCCTTTCCCGGA 61.257 61.111 8.56 0.00 0.00 5.14
27 28 2.751837 GGCTTGCCTTTCCCGGAG 60.752 66.667 0.73 0.00 0.00 4.63
100 101 2.474561 TCGAGGTCGATTGCGTACT 58.525 52.632 0.00 0.00 44.22 2.73
101 102 1.655484 TCGAGGTCGATTGCGTACTA 58.345 50.000 0.00 0.00 44.22 1.82
102 103 1.328680 TCGAGGTCGATTGCGTACTAC 59.671 52.381 0.00 0.00 44.22 2.73
103 104 1.063027 CGAGGTCGATTGCGTACTACA 59.937 52.381 0.00 0.00 43.02 2.74
104 105 2.286831 CGAGGTCGATTGCGTACTACAT 60.287 50.000 0.00 0.00 43.02 2.29
105 106 3.043586 GAGGTCGATTGCGTACTACATG 58.956 50.000 0.00 0.00 38.98 3.21
106 107 2.124903 GGTCGATTGCGTACTACATGG 58.875 52.381 0.00 0.00 38.98 3.66
107 108 1.521423 GTCGATTGCGTACTACATGGC 59.479 52.381 0.00 0.00 38.98 4.40
108 109 1.407618 TCGATTGCGTACTACATGGCT 59.592 47.619 0.00 0.00 38.98 4.75
109 110 1.522676 CGATTGCGTACTACATGGCTG 59.477 52.381 0.00 0.00 0.00 4.85
110 111 1.867233 GATTGCGTACTACATGGCTGG 59.133 52.381 0.00 0.00 0.00 4.85
111 112 0.611200 TTGCGTACTACATGGCTGGT 59.389 50.000 0.00 0.00 0.00 4.00
112 113 0.611200 TGCGTACTACATGGCTGGTT 59.389 50.000 0.00 0.00 0.00 3.67
113 114 1.006832 GCGTACTACATGGCTGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
114 115 1.651987 CGTACTACATGGCTGGTTGG 58.348 55.000 0.00 0.00 0.00 3.77
115 116 1.742411 CGTACTACATGGCTGGTTGGG 60.742 57.143 0.00 0.00 0.00 4.12
116 117 0.916086 TACTACATGGCTGGTTGGGG 59.084 55.000 0.00 0.00 0.00 4.96
117 118 1.076777 CTACATGGCTGGTTGGGGG 60.077 63.158 0.00 0.00 0.00 5.40
145 146 3.292159 GCGGGCGGGAGTGTTTTT 61.292 61.111 0.00 0.00 0.00 1.94
146 147 2.642700 CGGGCGGGAGTGTTTTTG 59.357 61.111 0.00 0.00 0.00 2.44
147 148 2.914908 CGGGCGGGAGTGTTTTTGG 61.915 63.158 0.00 0.00 0.00 3.28
148 149 1.529713 GGGCGGGAGTGTTTTTGGA 60.530 57.895 0.00 0.00 0.00 3.53
149 150 1.110518 GGGCGGGAGTGTTTTTGGAA 61.111 55.000 0.00 0.00 0.00 3.53
150 151 0.747852 GGCGGGAGTGTTTTTGGAAA 59.252 50.000 0.00 0.00 0.00 3.13
151 152 1.137282 GGCGGGAGTGTTTTTGGAAAA 59.863 47.619 0.00 0.00 0.00 2.29
152 153 2.418884 GGCGGGAGTGTTTTTGGAAAAA 60.419 45.455 0.00 0.00 35.67 1.94
173 174 4.675063 AAATGGGAGGAAATGGTAGTGT 57.325 40.909 0.00 0.00 0.00 3.55
174 175 3.933861 ATGGGAGGAAATGGTAGTGTC 57.066 47.619 0.00 0.00 0.00 3.67
175 176 2.915869 TGGGAGGAAATGGTAGTGTCT 58.084 47.619 0.00 0.00 0.00 3.41
176 177 2.571653 TGGGAGGAAATGGTAGTGTCTG 59.428 50.000 0.00 0.00 0.00 3.51
177 178 2.633488 GGAGGAAATGGTAGTGTCTGC 58.367 52.381 0.00 0.00 0.00 4.26
178 179 2.633488 GAGGAAATGGTAGTGTCTGCC 58.367 52.381 0.00 0.00 36.77 4.85
182 183 3.056458 TGGTAGTGTCTGCCACCG 58.944 61.111 2.65 0.00 45.74 4.94
183 184 1.532078 TGGTAGTGTCTGCCACCGA 60.532 57.895 2.65 0.00 45.74 4.69
184 185 1.080025 GGTAGTGTCTGCCACCGAC 60.080 63.158 0.00 0.00 45.74 4.79
185 186 1.080025 GTAGTGTCTGCCACCGACC 60.080 63.158 0.00 0.00 45.74 4.79
186 187 1.532078 TAGTGTCTGCCACCGACCA 60.532 57.895 0.00 0.00 45.74 4.02
187 188 1.116536 TAGTGTCTGCCACCGACCAA 61.117 55.000 0.00 0.00 45.74 3.67
188 189 2.110213 TGTCTGCCACCGACCAAC 59.890 61.111 0.00 0.00 0.00 3.77
189 190 3.041940 GTCTGCCACCGACCAACG 61.042 66.667 0.00 0.00 42.18 4.10
205 206 3.532155 CGGGCCCGAGAAGAGGAG 61.532 72.222 41.82 4.63 42.83 3.69
206 207 2.364448 GGGCCCGAGAAGAGGAGT 60.364 66.667 5.69 0.00 0.00 3.85
207 208 1.076192 GGGCCCGAGAAGAGGAGTA 60.076 63.158 5.69 0.00 0.00 2.59
208 209 1.110518 GGGCCCGAGAAGAGGAGTAG 61.111 65.000 5.69 0.00 0.00 2.57
209 210 1.110518 GGCCCGAGAAGAGGAGTAGG 61.111 65.000 0.00 0.00 0.00 3.18
210 211 1.740332 GCCCGAGAAGAGGAGTAGGC 61.740 65.000 0.00 0.00 0.00 3.93
211 212 1.448922 CCCGAGAAGAGGAGTAGGCG 61.449 65.000 0.00 0.00 0.00 5.52
212 213 1.357334 CGAGAAGAGGAGTAGGCGC 59.643 63.158 0.00 0.00 0.00 6.53
213 214 1.357334 GAGAAGAGGAGTAGGCGCG 59.643 63.158 0.00 0.00 0.00 6.86
214 215 2.278923 GAAGAGGAGTAGGCGCGC 60.279 66.667 25.94 25.94 0.00 6.86
215 216 4.194720 AAGAGGAGTAGGCGCGCG 62.195 66.667 28.44 28.44 0.00 6.86
230 231 4.405173 GCGCGTCCGTTTCGTGTC 62.405 66.667 8.43 0.00 40.28 3.67
231 232 3.759828 CGCGTCCGTTTCGTGTCC 61.760 66.667 0.00 0.00 34.71 4.02
232 233 3.759828 GCGTCCGTTTCGTGTCCG 61.760 66.667 0.00 0.00 0.00 4.79
233 234 2.353839 CGTCCGTTTCGTGTCCGT 60.354 61.111 0.00 0.00 35.01 4.69
234 235 2.641783 CGTCCGTTTCGTGTCCGTG 61.642 63.158 0.00 0.00 35.01 4.94
235 236 2.659244 TCCGTTTCGTGTCCGTGC 60.659 61.111 0.00 0.00 35.01 5.34
236 237 3.708734 CCGTTTCGTGTCCGTGCC 61.709 66.667 0.00 0.00 35.01 5.01
237 238 4.054455 CGTTTCGTGTCCGTGCCG 62.054 66.667 0.00 0.00 35.01 5.69
238 239 2.659244 GTTTCGTGTCCGTGCCGA 60.659 61.111 0.00 0.00 35.01 5.54
239 240 2.659244 TTTCGTGTCCGTGCCGAC 60.659 61.111 0.00 0.00 35.01 4.79
240 241 4.986587 TTCGTGTCCGTGCCGACG 62.987 66.667 0.00 0.00 45.67 5.12
265 266 7.807687 CAAATCTTGCTCAAAATTAGGTCAG 57.192 36.000 0.00 0.00 0.00 3.51
266 267 6.521151 AATCTTGCTCAAAATTAGGTCAGG 57.479 37.500 0.00 0.00 0.00 3.86
267 268 5.241403 TCTTGCTCAAAATTAGGTCAGGA 57.759 39.130 0.00 0.00 0.00 3.86
268 269 5.630121 TCTTGCTCAAAATTAGGTCAGGAA 58.370 37.500 0.00 0.00 0.00 3.36
269 270 6.248433 TCTTGCTCAAAATTAGGTCAGGAAT 58.752 36.000 0.00 0.00 0.00 3.01
270 271 5.902613 TGCTCAAAATTAGGTCAGGAATG 57.097 39.130 0.00 0.00 0.00 2.67
271 272 5.569355 TGCTCAAAATTAGGTCAGGAATGA 58.431 37.500 0.00 0.00 0.00 2.57
272 273 5.649395 TGCTCAAAATTAGGTCAGGAATGAG 59.351 40.000 0.00 0.00 35.92 2.90
273 274 5.649831 GCTCAAAATTAGGTCAGGAATGAGT 59.350 40.000 0.00 0.00 35.42 3.41
274 275 6.183360 GCTCAAAATTAGGTCAGGAATGAGTC 60.183 42.308 0.00 0.00 35.42 3.36
275 276 5.874810 TCAAAATTAGGTCAGGAATGAGTCG 59.125 40.000 0.00 0.00 0.00 4.18
276 277 2.961526 TTAGGTCAGGAATGAGTCGC 57.038 50.000 0.00 0.00 0.00 5.19
277 278 1.112113 TAGGTCAGGAATGAGTCGCC 58.888 55.000 0.00 0.00 0.00 5.54
278 279 1.153349 GGTCAGGAATGAGTCGCCC 60.153 63.158 0.00 0.00 0.00 6.13
279 280 1.519455 GTCAGGAATGAGTCGCCCG 60.519 63.158 0.00 0.00 0.00 6.13
280 281 2.892425 CAGGAATGAGTCGCCCGC 60.892 66.667 0.00 0.00 0.00 6.13
281 282 4.514577 AGGAATGAGTCGCCCGCG 62.515 66.667 0.00 0.00 41.35 6.46
282 283 4.508128 GGAATGAGTCGCCCGCGA 62.508 66.667 8.23 7.87 46.87 5.87
297 298 3.398920 CGAGATGCGCGTCCATTT 58.601 55.556 25.54 7.44 0.00 2.32
298 299 2.588731 CGAGATGCGCGTCCATTTA 58.411 52.632 25.54 0.00 0.00 1.40
299 300 0.927537 CGAGATGCGCGTCCATTTAA 59.072 50.000 25.54 0.00 0.00 1.52
300 301 1.526887 CGAGATGCGCGTCCATTTAAT 59.473 47.619 25.54 5.43 0.00 1.40
301 302 2.032894 CGAGATGCGCGTCCATTTAATT 60.033 45.455 25.54 4.63 0.00 1.40
302 303 3.545633 GAGATGCGCGTCCATTTAATTC 58.454 45.455 25.54 10.45 0.00 2.17
303 304 2.290641 AGATGCGCGTCCATTTAATTCC 59.709 45.455 25.54 0.00 0.00 3.01
304 305 0.736053 TGCGCGTCCATTTAATTCCC 59.264 50.000 8.43 0.00 0.00 3.97
305 306 0.316689 GCGCGTCCATTTAATTCCCG 60.317 55.000 8.43 0.00 0.00 5.14
306 307 0.316689 CGCGTCCATTTAATTCCCGC 60.317 55.000 0.00 0.00 36.57 6.13
307 308 0.316689 GCGTCCATTTAATTCCCGCG 60.317 55.000 0.00 0.00 0.00 6.46
308 309 0.316689 CGTCCATTTAATTCCCGCGC 60.317 55.000 0.00 0.00 0.00 6.86
309 310 0.030235 GTCCATTTAATTCCCGCGCC 59.970 55.000 0.00 0.00 0.00 6.53
310 311 1.104577 TCCATTTAATTCCCGCGCCC 61.105 55.000 0.00 0.00 0.00 6.13
311 312 1.388065 CCATTTAATTCCCGCGCCCA 61.388 55.000 0.00 0.00 0.00 5.36
312 313 0.248866 CATTTAATTCCCGCGCCCAC 60.249 55.000 0.00 0.00 0.00 4.61
313 314 1.388837 ATTTAATTCCCGCGCCCACC 61.389 55.000 0.00 0.00 0.00 4.61
314 315 3.999297 TTAATTCCCGCGCCCACCC 62.999 63.158 0.00 0.00 0.00 4.61
322 323 3.670377 GCGCCCACCCAAACAGAC 61.670 66.667 0.00 0.00 0.00 3.51
323 324 3.353836 CGCCCACCCAAACAGACG 61.354 66.667 0.00 0.00 0.00 4.18
324 325 3.670377 GCCCACCCAAACAGACGC 61.670 66.667 0.00 0.00 0.00 5.19
325 326 3.353836 CCCACCCAAACAGACGCG 61.354 66.667 3.53 3.53 0.00 6.01
326 327 3.353836 CCACCCAAACAGACGCGG 61.354 66.667 12.47 0.00 0.00 6.46
327 328 3.353836 CACCCAAACAGACGCGGG 61.354 66.667 12.47 0.80 44.88 6.13
341 342 4.770874 CGGGCGGACGAAATGGGT 62.771 66.667 0.00 0.00 35.47 4.51
342 343 2.822701 GGGCGGACGAAATGGGTC 60.823 66.667 0.00 0.00 0.00 4.46
346 347 2.274432 GGACGAAATGGGTCCCCC 59.726 66.667 5.13 0.00 46.65 5.40
361 362 3.883997 CCCCCATTCAAACAACACG 57.116 52.632 0.00 0.00 0.00 4.49
362 363 0.319469 CCCCCATTCAAACAACACGC 60.319 55.000 0.00 0.00 0.00 5.34
363 364 0.319469 CCCCATTCAAACAACACGCC 60.319 55.000 0.00 0.00 0.00 5.68
398 399 0.106268 AATGTGCCCAGGTCAACACA 60.106 50.000 0.00 0.00 46.16 3.72
399 400 0.106268 ATGTGCCCAGGTCAACACAA 60.106 50.000 6.07 0.00 45.33 3.33
447 448 3.422303 CATGGGTGCACGTGACGG 61.422 66.667 22.23 0.00 0.00 4.79
550 551 0.320160 GGAAACGAACTACGCCCACT 60.320 55.000 0.00 0.00 46.94 4.00
555 556 0.788391 CGAACTACGCCCACTGTTTC 59.212 55.000 0.00 0.00 34.51 2.78
569 570 1.152546 GTTTCACCAGCCCCAAGGT 60.153 57.895 0.00 0.00 39.10 3.50
570 571 1.152830 TTTCACCAGCCCCAAGGTC 59.847 57.895 0.00 0.00 35.52 3.85
580 581 4.722700 CCAAGGTCCACGGCCAGG 62.723 72.222 2.24 3.74 0.00 4.45
645 649 2.779506 ACTTGGAATTCACGTCCTTCC 58.220 47.619 7.93 11.58 39.13 3.46
663 667 2.589720 TCCAGCGGTAGAATCGGATAA 58.410 47.619 0.00 0.00 0.00 1.75
664 668 2.295349 TCCAGCGGTAGAATCGGATAAC 59.705 50.000 0.00 0.00 0.00 1.89
665 669 2.609737 CCAGCGGTAGAATCGGATAACC 60.610 54.545 0.00 0.00 0.00 2.85
666 670 2.296471 CAGCGGTAGAATCGGATAACCT 59.704 50.000 12.52 4.81 0.00 3.50
667 671 2.963782 AGCGGTAGAATCGGATAACCTT 59.036 45.455 12.52 2.41 0.00 3.50
668 672 3.387050 AGCGGTAGAATCGGATAACCTTT 59.613 43.478 12.52 2.16 0.00 3.11
670 674 5.069516 AGCGGTAGAATCGGATAACCTTTTA 59.930 40.000 12.52 0.00 0.00 1.52
671 675 5.404667 GCGGTAGAATCGGATAACCTTTTAG 59.595 44.000 12.52 2.23 0.00 1.85
673 677 5.699915 GGTAGAATCGGATAACCTTTTAGGC 59.300 44.000 8.90 0.00 39.63 3.93
674 678 4.715713 AGAATCGGATAACCTTTTAGGCC 58.284 43.478 0.00 0.00 39.63 5.19
675 679 4.412528 AGAATCGGATAACCTTTTAGGCCT 59.587 41.667 11.78 11.78 39.63 5.19
676 680 3.832615 TCGGATAACCTTTTAGGCCTC 57.167 47.619 9.68 0.00 39.63 4.70
677 681 2.436911 TCGGATAACCTTTTAGGCCTCC 59.563 50.000 9.68 0.00 39.63 4.30
679 683 3.118000 CGGATAACCTTTTAGGCCTCCTT 60.118 47.826 9.68 0.00 39.63 3.36
680 684 4.627984 CGGATAACCTTTTAGGCCTCCTTT 60.628 45.833 9.68 0.00 39.63 3.11
681 685 4.645136 GGATAACCTTTTAGGCCTCCTTTG 59.355 45.833 9.68 0.00 39.63 2.77
682 686 2.604912 ACCTTTTAGGCCTCCTTTGG 57.395 50.000 9.68 9.46 39.63 3.28
683 687 1.787058 ACCTTTTAGGCCTCCTTTGGT 59.213 47.619 9.68 10.18 39.63 3.67
684 688 2.179204 ACCTTTTAGGCCTCCTTTGGTT 59.821 45.455 9.68 0.00 39.63 3.67
685 689 3.239449 CCTTTTAGGCCTCCTTTGGTTT 58.761 45.455 9.68 0.00 34.61 3.27
686 690 3.006859 CCTTTTAGGCCTCCTTTGGTTTG 59.993 47.826 9.68 0.00 34.61 2.93
687 691 2.302587 TTAGGCCTCCTTTGGTTTGG 57.697 50.000 9.68 0.00 34.61 3.28
688 692 1.154430 TAGGCCTCCTTTGGTTTGGT 58.846 50.000 9.68 0.00 34.61 3.67
689 693 0.264657 AGGCCTCCTTTGGTTTGGTT 59.735 50.000 0.00 0.00 0.00 3.67
690 694 1.128200 GGCCTCCTTTGGTTTGGTTT 58.872 50.000 0.00 0.00 0.00 3.27
691 695 2.090999 AGGCCTCCTTTGGTTTGGTTTA 60.091 45.455 0.00 0.00 0.00 2.01
692 696 2.299013 GGCCTCCTTTGGTTTGGTTTAG 59.701 50.000 0.00 0.00 0.00 1.85
693 697 3.227614 GCCTCCTTTGGTTTGGTTTAGA 58.772 45.455 0.00 0.00 0.00 2.10
694 698 3.255888 GCCTCCTTTGGTTTGGTTTAGAG 59.744 47.826 0.00 0.00 0.00 2.43
695 699 3.826729 CCTCCTTTGGTTTGGTTTAGAGG 59.173 47.826 0.00 0.00 33.04 3.69
696 700 4.447180 CCTCCTTTGGTTTGGTTTAGAGGA 60.447 45.833 0.00 0.00 40.69 3.71
697 701 5.132043 TCCTTTGGTTTGGTTTAGAGGAA 57.868 39.130 0.00 0.00 0.00 3.36
698 702 5.711698 TCCTTTGGTTTGGTTTAGAGGAAT 58.288 37.500 0.00 0.00 0.00 3.01
699 703 6.140377 TCCTTTGGTTTGGTTTAGAGGAATT 58.860 36.000 0.00 0.00 0.00 2.17
700 704 6.613679 TCCTTTGGTTTGGTTTAGAGGAATTT 59.386 34.615 0.00 0.00 0.00 1.82
701 705 7.785506 TCCTTTGGTTTGGTTTAGAGGAATTTA 59.214 33.333 0.00 0.00 0.00 1.40
702 706 8.425703 CCTTTGGTTTGGTTTAGAGGAATTTAA 58.574 33.333 0.00 0.00 0.00 1.52
703 707 9.996554 CTTTGGTTTGGTTTAGAGGAATTTAAT 57.003 29.630 0.00 0.00 0.00 1.40
770 774 9.936759 TTAAAGCCTTTTGGTTTATAGAAATGG 57.063 29.630 0.00 0.00 44.09 3.16
771 775 7.790782 AAGCCTTTTGGTTTATAGAAATGGA 57.209 32.000 0.00 0.00 41.38 3.41
772 776 7.978099 AGCCTTTTGGTTTATAGAAATGGAT 57.022 32.000 0.00 0.00 42.99 3.41
773 777 8.379428 AGCCTTTTGGTTTATAGAAATGGATT 57.621 30.769 0.00 0.00 42.99 3.01
774 778 8.478066 AGCCTTTTGGTTTATAGAAATGGATTC 58.522 33.333 0.00 0.00 42.99 2.52
775 779 8.478066 GCCTTTTGGTTTATAGAAATGGATTCT 58.522 33.333 0.00 0.00 45.57 2.40
805 809 9.702253 TCCTACATAGGATTAGTTCATATCCTC 57.298 37.037 6.90 0.00 45.94 3.71
806 810 8.919145 CCTACATAGGATTAGTTCATATCCTCC 58.081 40.741 6.90 0.00 45.94 4.30
807 811 9.480861 CTACATAGGATTAGTTCATATCCTCCA 57.519 37.037 6.90 0.00 45.94 3.86
808 812 8.742125 ACATAGGATTAGTTCATATCCTCCAA 57.258 34.615 6.90 0.00 45.94 3.53
809 813 9.170890 ACATAGGATTAGTTCATATCCTCCAAA 57.829 33.333 6.90 0.00 45.94 3.28
813 817 9.579932 AGGATTAGTTCATATCCTCCAAATTTC 57.420 33.333 0.00 0.00 45.94 2.17
814 818 9.354673 GGATTAGTTCATATCCTCCAAATTTCA 57.645 33.333 0.00 0.00 37.83 2.69
818 822 8.930846 AGTTCATATCCTCCAAATTTCATAGG 57.069 34.615 4.32 4.32 0.00 2.57
819 823 8.727149 AGTTCATATCCTCCAAATTTCATAGGA 58.273 33.333 12.71 12.71 40.50 2.94
820 824 9.354673 GTTCATATCCTCCAAATTTCATAGGAA 57.645 33.333 13.83 5.66 39.68 3.36
821 825 9.934784 TTCATATCCTCCAAATTTCATAGGAAA 57.065 29.630 4.85 4.85 46.36 3.13
822 826 9.934784 TCATATCCTCCAAATTTCATAGGAAAA 57.065 29.630 6.65 8.07 45.52 2.29
849 853 7.823745 AAAAAGAGGCTAGACTCAATGAAAA 57.176 32.000 27.48 0.00 39.97 2.29
850 854 7.823745 AAAAGAGGCTAGACTCAATGAAAAA 57.176 32.000 27.48 0.00 39.97 1.94
872 876 8.750515 AAAAATTCCTTTGATGTCAACCAAAT 57.249 26.923 0.00 0.00 35.28 2.32
873 877 9.844257 AAAAATTCCTTTGATGTCAACCAAATA 57.156 25.926 0.00 0.00 35.28 1.40
874 878 9.844257 AAAATTCCTTTGATGTCAACCAAATAA 57.156 25.926 0.00 4.13 35.28 1.40
932 936 7.798596 AGATACATGTCATCTCATTTTCCAC 57.201 36.000 0.00 0.00 0.00 4.02
933 937 7.341030 AGATACATGTCATCTCATTTTCCACA 58.659 34.615 0.00 0.00 0.00 4.17
934 938 7.830697 AGATACATGTCATCTCATTTTCCACAA 59.169 33.333 0.00 0.00 0.00 3.33
935 939 6.263516 ACATGTCATCTCATTTTCCACAAG 57.736 37.500 0.00 0.00 0.00 3.16
936 940 6.005823 ACATGTCATCTCATTTTCCACAAGA 58.994 36.000 0.00 0.00 0.00 3.02
937 941 6.662234 ACATGTCATCTCATTTTCCACAAGAT 59.338 34.615 0.00 0.00 0.00 2.40
938 942 7.177921 ACATGTCATCTCATTTTCCACAAGATT 59.822 33.333 0.00 0.00 0.00 2.40
939 943 7.528996 TGTCATCTCATTTTCCACAAGATTT 57.471 32.000 0.00 0.00 0.00 2.17
940 944 8.634335 TGTCATCTCATTTTCCACAAGATTTA 57.366 30.769 0.00 0.00 0.00 1.40
941 945 9.246670 TGTCATCTCATTTTCCACAAGATTTAT 57.753 29.630 0.00 0.00 0.00 1.40
971 975 9.609346 TCTATGATAATCATATCCTACGAACGA 57.391 33.333 0.14 0.00 38.54 3.85
974 978 9.923143 ATGATAATCATATCCTACGAACGAAAA 57.077 29.630 0.14 0.00 34.88 2.29
975 979 9.406828 TGATAATCATATCCTACGAACGAAAAG 57.593 33.333 0.14 0.00 37.68 2.27
976 980 9.622004 GATAATCATATCCTACGAACGAAAAGA 57.378 33.333 0.14 0.00 33.20 2.52
977 981 7.932120 AATCATATCCTACGAACGAAAAGAG 57.068 36.000 0.14 0.00 0.00 2.85
978 982 5.828747 TCATATCCTACGAACGAAAAGAGG 58.171 41.667 0.14 0.00 0.00 3.69
979 983 2.358939 TCCTACGAACGAAAAGAGGC 57.641 50.000 0.14 0.00 0.00 4.70
980 984 1.067354 TCCTACGAACGAAAAGAGGCC 60.067 52.381 0.00 0.00 0.00 5.19
981 985 1.067071 CCTACGAACGAAAAGAGGCCT 60.067 52.381 3.86 3.86 0.00 5.19
1044 1048 1.600916 GCGTGCCAATCCCTATCCC 60.601 63.158 0.00 0.00 0.00 3.85
1177 1181 4.899239 GCCCGCGAGATCAGGTGG 62.899 72.222 8.23 8.26 0.00 4.61
1178 1182 3.461773 CCCGCGAGATCAGGTGGT 61.462 66.667 8.23 0.00 31.86 4.16
1179 1183 2.125326 CCCGCGAGATCAGGTGGTA 61.125 63.158 8.23 0.00 31.86 3.25
1180 1184 1.360551 CCGCGAGATCAGGTGGTAG 59.639 63.158 8.23 0.00 0.00 3.18
1181 1185 1.360551 CGCGAGATCAGGTGGTAGG 59.639 63.158 0.00 0.00 0.00 3.18
1182 1186 1.101635 CGCGAGATCAGGTGGTAGGA 61.102 60.000 0.00 0.00 0.00 2.94
1208 1212 2.312722 TGGAGAAAACGTCAACGGAA 57.687 45.000 7.53 0.00 44.95 4.30
1275 1279 1.751162 CTCTTCGCCTCTCCGTCCT 60.751 63.158 0.00 0.00 0.00 3.85
1303 1314 0.107214 CTCCTCCTCTGCTCGTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
1311 1322 0.170116 CTGCTCGTCTCTGGTGAGTC 59.830 60.000 0.00 0.00 40.98 3.36
1327 1338 0.695347 AGTCCCTTCTCCAAAGCCTG 59.305 55.000 0.00 0.00 0.00 4.85
1328 1339 0.402121 GTCCCTTCTCCAAAGCCTGT 59.598 55.000 0.00 0.00 0.00 4.00
1363 1395 1.297967 CGCTCGATCTGTGTCTCGG 60.298 63.158 0.00 0.00 35.64 4.63
1414 1446 2.328099 GCTTCCTGCTTCGGTGGTG 61.328 63.158 0.00 0.00 38.95 4.17
1415 1447 1.672356 CTTCCTGCTTCGGTGGTGG 60.672 63.158 0.00 0.00 0.00 4.61
1416 1448 3.190738 TTCCTGCTTCGGTGGTGGG 62.191 63.158 0.00 0.00 0.00 4.61
1417 1449 3.953775 CCTGCTTCGGTGGTGGGT 61.954 66.667 0.00 0.00 0.00 4.51
1418 1450 2.669569 CTGCTTCGGTGGTGGGTG 60.670 66.667 0.00 0.00 0.00 4.61
1419 1451 4.263572 TGCTTCGGTGGTGGGTGG 62.264 66.667 0.00 0.00 0.00 4.61
1421 1453 4.344865 CTTCGGTGGTGGGTGGGG 62.345 72.222 0.00 0.00 0.00 4.96
1438 1470 3.182996 GTGGGGTGGAGTGGGGTT 61.183 66.667 0.00 0.00 0.00 4.11
1460 1492 2.596338 GGGGGTGGGTGTTGTTCG 60.596 66.667 0.00 0.00 0.00 3.95
1523 1558 1.664649 CTGTGCGCGGAAGAGTTGA 60.665 57.895 8.83 0.00 0.00 3.18
1531 1566 0.739112 CGGAAGAGTTGAGGAGCTGC 60.739 60.000 0.00 0.00 0.00 5.25
1541 1576 0.672889 GAGGAGCTGCTCGATCATGA 59.327 55.000 20.11 0.00 0.00 3.07
1573 1608 1.131315 GCAATCTCCGCTTGTTTCCTC 59.869 52.381 0.00 0.00 0.00 3.71
1575 1610 0.741221 ATCTCCGCTTGTTTCCTCGC 60.741 55.000 0.00 0.00 0.00 5.03
1619 1654 3.683822 CAGAGATCAGTGGCTTTGTTCTC 59.316 47.826 15.77 15.77 39.78 2.87
1631 1666 0.937304 TTGTTCTCTGCGCAGTTGAC 59.063 50.000 34.70 27.83 0.00 3.18
1650 1685 8.592998 CAGTTGACGAAATTATAACTACAGGAC 58.407 37.037 0.00 0.00 31.01 3.85
1659 1694 6.710597 TTATAACTACAGGACGCTTCAGAT 57.289 37.500 0.00 0.00 0.00 2.90
1661 1696 2.729194 ACTACAGGACGCTTCAGATCT 58.271 47.619 0.00 0.00 0.00 2.75
1668 1703 1.663135 GACGCTTCAGATCTTTCCAGC 59.337 52.381 0.00 0.00 0.00 4.85
1674 1709 4.141959 GCTTCAGATCTTTCCAGCTCTAGT 60.142 45.833 0.00 0.00 0.00 2.57
1675 1710 5.068460 GCTTCAGATCTTTCCAGCTCTAGTA 59.932 44.000 0.00 0.00 0.00 1.82
1715 1750 0.392863 TCTGCACCATGAATCACGGG 60.393 55.000 0.00 0.51 0.00 5.28
1753 1788 6.713450 GGTAGAGGTCTAGAGATTCTGTTAGG 59.287 46.154 0.00 0.00 0.00 2.69
1780 1815 2.244695 AGTGTGGAACTCGTGGTATCA 58.755 47.619 0.00 0.00 38.04 2.15
1858 1893 1.301479 GTGAACAGACCGGGTGTCC 60.301 63.158 3.30 0.00 45.68 4.02
1875 1910 5.297029 GGGTGTCCAAGTCTTTGCTATTATC 59.703 44.000 0.00 0.00 32.79 1.75
1906 1985 0.537143 ATGGACGGCTGCTGTTGAAA 60.537 50.000 16.36 2.44 0.00 2.69
1909 1988 0.593128 GACGGCTGCTGTTGAAACAT 59.407 50.000 16.36 0.00 38.41 2.71
1917 1996 4.496895 GCTGCTGTTGAAACATATAAAGCG 59.503 41.667 0.00 0.00 38.41 4.68
1935 2014 2.363680 AGCGTGATCTATTCTCCTGGTG 59.636 50.000 0.00 0.00 0.00 4.17
2035 2114 6.049955 AGATCCATCAAAGGAACTAACGAA 57.950 37.500 0.00 0.00 41.92 3.85
2087 2167 0.798776 CCGCAAGTGTCTGGTCATTC 59.201 55.000 0.00 0.00 0.00 2.67
2117 2197 2.364324 TGTACCATATCTCCAGCCGTTC 59.636 50.000 0.00 0.00 0.00 3.95
2121 2201 0.962489 ATATCTCCAGCCGTTCTCCG 59.038 55.000 0.00 0.00 0.00 4.63
2137 2217 1.122632 TCCGGGTTAGTTGGTCTGCA 61.123 55.000 0.00 0.00 0.00 4.41
2254 2334 6.069331 TGCTAAATATTACTCTCTCCGTCCT 58.931 40.000 0.00 0.00 0.00 3.85
2277 2357 8.836413 TCCTAAAATAAGTGTCTCAACTTTGTG 58.164 33.333 0.00 0.00 40.77 3.33
2297 2377 2.633967 TGCTACTAACTTTGGGACGGAA 59.366 45.455 0.00 0.00 0.00 4.30
2341 2422 5.778241 CCTAAGTTAAATTCCAAACACCCCT 59.222 40.000 0.00 0.00 0.00 4.79
2344 2425 7.678207 AAGTTAAATTCCAAACACCCCTAAA 57.322 32.000 2.36 0.00 0.00 1.85
2346 2427 4.967084 AAATTCCAAACACCCCTAAACC 57.033 40.909 0.00 0.00 0.00 3.27
2348 2429 3.691698 TTCCAAACACCCCTAAACCTT 57.308 42.857 0.00 0.00 0.00 3.50
2358 2439 6.031386 ACACCCCTAAACCTTAACTATGGTA 58.969 40.000 0.00 0.00 35.17 3.25
2405 2486 5.480772 CGGGGACTGATATAATGTTAGGACT 59.519 44.000 0.00 0.00 36.31 3.85
2494 2575 4.056125 CGACGCAGAGAGCCACCA 62.056 66.667 0.00 0.00 41.38 4.17
2514 2596 4.758165 ACCATTTTTACGATGTTTCTCCGT 59.242 37.500 0.00 0.00 39.94 4.69
2792 3168 4.929819 TTTAGGTGTTCCTTTCCAAAGC 57.070 40.909 0.00 0.00 42.12 3.51
2798 3174 4.321230 GGTGTTCCTTTCCAAAGCTACATG 60.321 45.833 0.00 0.00 33.50 3.21
2813 3189 5.309323 GCTACATGCTGGTGAATTTGTTA 57.691 39.130 0.00 0.00 38.95 2.41
2827 3203 8.522830 GGTGAATTTGTTAGGATTCTTGATCAA 58.477 33.333 8.12 8.12 36.43 2.57
2876 3252 1.695242 TCTGCCCTTGTTTCTCGGTTA 59.305 47.619 0.00 0.00 0.00 2.85
2880 3256 3.244770 TGCCCTTGTTTCTCGGTTATCTT 60.245 43.478 0.00 0.00 0.00 2.40
2884 3260 6.238402 GCCCTTGTTTCTCGGTTATCTTATTC 60.238 42.308 0.00 0.00 0.00 1.75
2911 3287 8.824159 TTGAAAATTCTTCAACAAGTTGTGAA 57.176 26.923 9.79 13.50 41.16 3.18
2975 3351 4.546829 TTTAGTACTTCGGTTGATGGCT 57.453 40.909 0.00 0.00 0.00 4.75
3023 3408 1.595929 GGAAACTGTTCGCCGGTCA 60.596 57.895 1.90 0.00 34.28 4.02
3101 3486 3.579302 CCAAGCACCACCCCTGGA 61.579 66.667 0.00 0.00 40.55 3.86
3108 3493 2.391130 ACCACCCCTGGAGCAAACA 61.391 57.895 0.00 0.00 40.55 2.83
3116 3501 2.632377 CCTGGAGCAAACACATATCGT 58.368 47.619 0.00 0.00 0.00 3.73
3161 3546 2.565841 TCGAAGCTGATCTCGATCTCA 58.434 47.619 4.16 0.00 38.60 3.27
3185 3570 1.222936 GTCCACTCCTGATGCCCTG 59.777 63.158 0.00 0.00 0.00 4.45
3266 3655 7.803189 CGTGCATACATAAGTGTTTTTCTTCTT 59.197 33.333 0.00 0.00 39.77 2.52
3267 3656 9.118236 GTGCATACATAAGTGTTTTTCTTCTTC 57.882 33.333 0.00 0.00 39.77 2.87
3268 3657 9.066892 TGCATACATAAGTGTTTTTCTTCTTCT 57.933 29.630 0.00 0.00 39.77 2.85
3303 3692 1.072965 CCCTTCTGCTGTCTTGGTCTT 59.927 52.381 0.00 0.00 0.00 3.01
3585 3974 5.118990 CAACGGGAGAGAAATGATGTGTAT 58.881 41.667 0.00 0.00 0.00 2.29
3722 4111 4.038282 TCACGGCGTAACTGGATGTATTAT 59.962 41.667 14.22 0.00 0.00 1.28
3723 4112 4.384846 CACGGCGTAACTGGATGTATTATC 59.615 45.833 14.22 0.00 0.00 1.75
4003 4428 7.536895 TCACAAACATTTTCTGAAAACATGG 57.463 32.000 17.06 9.99 32.37 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.751837 CTCCGGGAAAGGCAAGCC 60.752 66.667 0.00 2.02 0.00 4.35
11 12 2.751837 CCTCCGGGAAAGGCAAGC 60.752 66.667 0.00 0.00 33.58 4.01
69 70 2.098680 CTCGACCTCGACGCTGTC 59.901 66.667 6.53 6.53 44.22 3.51
70 71 3.432588 CCTCGACCTCGACGCTGT 61.433 66.667 0.00 0.00 44.22 4.40
71 72 3.384014 GACCTCGACCTCGACGCTG 62.384 68.421 0.00 0.00 44.22 5.18
72 73 3.126225 GACCTCGACCTCGACGCT 61.126 66.667 0.00 0.00 44.22 5.07
73 74 4.517703 CGACCTCGACCTCGACGC 62.518 72.222 1.47 0.00 44.22 5.19
74 75 2.812609 TCGACCTCGACCTCGACG 60.813 66.667 5.73 0.00 44.22 5.12
83 84 1.063027 TGTAGTACGCAATCGACCTCG 59.937 52.381 0.00 0.00 39.41 4.63
84 85 2.838386 TGTAGTACGCAATCGACCTC 57.162 50.000 0.00 0.00 39.41 3.85
85 86 2.223735 CCATGTAGTACGCAATCGACCT 60.224 50.000 0.00 0.00 39.41 3.85
86 87 2.124903 CCATGTAGTACGCAATCGACC 58.875 52.381 0.00 0.00 39.41 4.79
87 88 1.521423 GCCATGTAGTACGCAATCGAC 59.479 52.381 0.00 0.00 39.41 4.20
88 89 1.407618 AGCCATGTAGTACGCAATCGA 59.592 47.619 0.00 0.00 39.41 3.59
89 90 1.522676 CAGCCATGTAGTACGCAATCG 59.477 52.381 0.00 0.00 42.43 3.34
90 91 1.867233 CCAGCCATGTAGTACGCAATC 59.133 52.381 0.00 0.00 0.00 2.67
91 92 1.209504 ACCAGCCATGTAGTACGCAAT 59.790 47.619 0.00 0.00 0.00 3.56
92 93 0.611200 ACCAGCCATGTAGTACGCAA 59.389 50.000 0.00 0.00 0.00 4.85
93 94 0.611200 AACCAGCCATGTAGTACGCA 59.389 50.000 0.00 0.00 0.00 5.24
94 95 1.006832 CAACCAGCCATGTAGTACGC 58.993 55.000 0.00 0.00 0.00 4.42
95 96 1.651987 CCAACCAGCCATGTAGTACG 58.348 55.000 0.00 0.00 0.00 3.67
96 97 1.408266 CCCCAACCAGCCATGTAGTAC 60.408 57.143 0.00 0.00 0.00 2.73
97 98 0.916086 CCCCAACCAGCCATGTAGTA 59.084 55.000 0.00 0.00 0.00 1.82
98 99 1.691219 CCCCAACCAGCCATGTAGT 59.309 57.895 0.00 0.00 0.00 2.73
99 100 1.076777 CCCCCAACCAGCCATGTAG 60.077 63.158 0.00 0.00 0.00 2.74
100 101 3.095421 CCCCCAACCAGCCATGTA 58.905 61.111 0.00 0.00 0.00 2.29
128 129 3.292159 AAAAACACTCCCGCCCGC 61.292 61.111 0.00 0.00 0.00 6.13
129 130 2.642700 CAAAAACACTCCCGCCCG 59.357 61.111 0.00 0.00 0.00 6.13
130 131 1.110518 TTCCAAAAACACTCCCGCCC 61.111 55.000 0.00 0.00 0.00 6.13
131 132 0.747852 TTTCCAAAAACACTCCCGCC 59.252 50.000 0.00 0.00 0.00 6.13
132 133 2.588027 TTTTCCAAAAACACTCCCGC 57.412 45.000 0.00 0.00 0.00 6.13
150 151 5.402630 ACACTACCATTTCCTCCCATTTTT 58.597 37.500 0.00 0.00 0.00 1.94
151 152 5.010708 ACACTACCATTTCCTCCCATTTT 57.989 39.130 0.00 0.00 0.00 1.82
152 153 4.292306 AGACACTACCATTTCCTCCCATTT 59.708 41.667 0.00 0.00 0.00 2.32
153 154 3.852578 AGACACTACCATTTCCTCCCATT 59.147 43.478 0.00 0.00 0.00 3.16
154 155 3.200825 CAGACACTACCATTTCCTCCCAT 59.799 47.826 0.00 0.00 0.00 4.00
155 156 2.571653 CAGACACTACCATTTCCTCCCA 59.428 50.000 0.00 0.00 0.00 4.37
156 157 2.681097 GCAGACACTACCATTTCCTCCC 60.681 54.545 0.00 0.00 0.00 4.30
157 158 2.633488 GCAGACACTACCATTTCCTCC 58.367 52.381 0.00 0.00 0.00 4.30
158 159 2.027192 TGGCAGACACTACCATTTCCTC 60.027 50.000 0.00 0.00 0.00 3.71
159 160 1.985159 TGGCAGACACTACCATTTCCT 59.015 47.619 0.00 0.00 0.00 3.36
160 161 2.084546 GTGGCAGACACTACCATTTCC 58.915 52.381 0.00 0.00 46.72 3.13
171 172 2.110213 GTTGGTCGGTGGCAGACA 59.890 61.111 8.86 0.00 40.20 3.41
172 173 3.041940 CGTTGGTCGGTGGCAGAC 61.042 66.667 0.00 0.00 37.86 3.51
182 183 3.952628 CTTCTCGGGCCCGTTGGTC 62.953 68.421 41.57 2.98 40.74 4.02
183 184 4.016706 CTTCTCGGGCCCGTTGGT 62.017 66.667 41.57 0.00 40.74 3.67
184 185 3.665675 CTCTTCTCGGGCCCGTTGG 62.666 68.421 41.57 30.33 40.74 3.77
185 186 2.125512 CTCTTCTCGGGCCCGTTG 60.126 66.667 41.57 32.85 40.74 4.10
186 187 3.391382 CCTCTTCTCGGGCCCGTT 61.391 66.667 41.57 0.00 40.74 4.44
187 188 4.377760 TCCTCTTCTCGGGCCCGT 62.378 66.667 41.57 0.00 40.74 5.28
188 189 2.905935 TACTCCTCTTCTCGGGCCCG 62.906 65.000 39.13 39.13 41.35 6.13
189 190 1.076192 TACTCCTCTTCTCGGGCCC 60.076 63.158 13.57 13.57 0.00 5.80
190 191 1.110518 CCTACTCCTCTTCTCGGGCC 61.111 65.000 0.00 0.00 0.00 5.80
191 192 1.740332 GCCTACTCCTCTTCTCGGGC 61.740 65.000 0.00 0.00 0.00 6.13
192 193 1.448922 CGCCTACTCCTCTTCTCGGG 61.449 65.000 0.00 0.00 0.00 5.14
193 194 2.026522 CGCCTACTCCTCTTCTCGG 58.973 63.158 0.00 0.00 0.00 4.63
194 195 1.357334 GCGCCTACTCCTCTTCTCG 59.643 63.158 0.00 0.00 0.00 4.04
195 196 1.357334 CGCGCCTACTCCTCTTCTC 59.643 63.158 0.00 0.00 0.00 2.87
196 197 2.776913 GCGCGCCTACTCCTCTTCT 61.777 63.158 23.24 0.00 0.00 2.85
197 198 2.278923 GCGCGCCTACTCCTCTTC 60.279 66.667 23.24 0.00 0.00 2.87
198 199 4.194720 CGCGCGCCTACTCCTCTT 62.195 66.667 27.72 0.00 0.00 2.85
213 214 4.405173 GACACGAAACGGACGCGC 62.405 66.667 5.73 0.00 0.00 6.86
214 215 3.759828 GGACACGAAACGGACGCG 61.760 66.667 3.53 3.53 0.00 6.01
215 216 3.759828 CGGACACGAAACGGACGC 61.760 66.667 0.00 0.00 44.60 5.19
216 217 2.353839 ACGGACACGAAACGGACG 60.354 61.111 0.00 0.00 44.60 4.79
217 218 2.935446 GCACGGACACGAAACGGAC 61.935 63.158 0.00 0.00 44.60 4.79
218 219 2.659244 GCACGGACACGAAACGGA 60.659 61.111 0.00 0.00 44.60 4.69
219 220 3.708734 GGCACGGACACGAAACGG 61.709 66.667 0.00 0.00 44.60 4.44
241 242 6.810182 CCTGACCTAATTTTGAGCAAGATTTG 59.190 38.462 4.60 3.47 0.00 2.32
242 243 6.721208 TCCTGACCTAATTTTGAGCAAGATTT 59.279 34.615 4.60 0.00 0.00 2.17
243 244 6.248433 TCCTGACCTAATTTTGAGCAAGATT 58.752 36.000 4.68 4.68 0.00 2.40
244 245 5.819991 TCCTGACCTAATTTTGAGCAAGAT 58.180 37.500 0.00 0.00 0.00 2.40
245 246 5.241403 TCCTGACCTAATTTTGAGCAAGA 57.759 39.130 0.00 0.00 0.00 3.02
246 247 5.964958 TTCCTGACCTAATTTTGAGCAAG 57.035 39.130 0.00 0.00 0.00 4.01
247 248 6.009589 TCATTCCTGACCTAATTTTGAGCAA 58.990 36.000 0.00 0.00 0.00 3.91
248 249 5.569355 TCATTCCTGACCTAATTTTGAGCA 58.431 37.500 0.00 0.00 0.00 4.26
249 250 5.649831 ACTCATTCCTGACCTAATTTTGAGC 59.350 40.000 0.00 0.00 33.16 4.26
250 251 6.036517 CGACTCATTCCTGACCTAATTTTGAG 59.963 42.308 0.00 0.00 35.40 3.02
251 252 5.874810 CGACTCATTCCTGACCTAATTTTGA 59.125 40.000 0.00 0.00 0.00 2.69
252 253 5.447818 GCGACTCATTCCTGACCTAATTTTG 60.448 44.000 0.00 0.00 0.00 2.44
253 254 4.636206 GCGACTCATTCCTGACCTAATTTT 59.364 41.667 0.00 0.00 0.00 1.82
254 255 4.192317 GCGACTCATTCCTGACCTAATTT 58.808 43.478 0.00 0.00 0.00 1.82
255 256 3.432326 GGCGACTCATTCCTGACCTAATT 60.432 47.826 0.00 0.00 0.00 1.40
256 257 2.103263 GGCGACTCATTCCTGACCTAAT 59.897 50.000 0.00 0.00 0.00 1.73
257 258 1.480954 GGCGACTCATTCCTGACCTAA 59.519 52.381 0.00 0.00 0.00 2.69
258 259 1.112113 GGCGACTCATTCCTGACCTA 58.888 55.000 0.00 0.00 0.00 3.08
259 260 1.617947 GGGCGACTCATTCCTGACCT 61.618 60.000 0.00 0.00 0.00 3.85
260 261 1.153349 GGGCGACTCATTCCTGACC 60.153 63.158 0.00 0.00 0.00 4.02
261 262 1.519455 CGGGCGACTCATTCCTGAC 60.519 63.158 0.00 0.00 0.00 3.51
262 263 2.892640 CGGGCGACTCATTCCTGA 59.107 61.111 0.00 0.00 0.00 3.86
263 264 2.892425 GCGGGCGACTCATTCCTG 60.892 66.667 0.00 0.00 0.00 3.86
264 265 4.514577 CGCGGGCGACTCATTCCT 62.515 66.667 7.38 0.00 42.83 3.36
265 266 4.508128 TCGCGGGCGACTCATTCC 62.508 66.667 12.26 0.00 44.01 3.01
266 267 2.685387 ATCTCGCGGGCGACTCATTC 62.685 60.000 12.26 0.00 44.01 2.67
267 268 2.786495 ATCTCGCGGGCGACTCATT 61.786 57.895 12.26 0.00 44.01 2.57
268 269 3.219928 ATCTCGCGGGCGACTCAT 61.220 61.111 12.26 1.86 44.01 2.90
269 270 4.193334 CATCTCGCGGGCGACTCA 62.193 66.667 12.26 0.00 44.01 3.41
280 281 0.927537 TTAAATGGACGCGCATCTCG 59.072 50.000 5.73 0.00 42.12 4.04
281 282 3.545633 GAATTAAATGGACGCGCATCTC 58.454 45.455 5.73 0.00 0.00 2.75
282 283 2.290641 GGAATTAAATGGACGCGCATCT 59.709 45.455 5.73 0.00 0.00 2.90
283 284 2.604614 GGGAATTAAATGGACGCGCATC 60.605 50.000 5.73 0.00 0.00 3.91
284 285 1.336755 GGGAATTAAATGGACGCGCAT 59.663 47.619 5.73 0.00 0.00 4.73
285 286 0.736053 GGGAATTAAATGGACGCGCA 59.264 50.000 5.73 0.00 0.00 6.09
286 287 0.316689 CGGGAATTAAATGGACGCGC 60.317 55.000 5.73 0.00 0.00 6.86
287 288 0.316689 GCGGGAATTAAATGGACGCG 60.317 55.000 3.53 3.53 36.14 6.01
288 289 0.316689 CGCGGGAATTAAATGGACGC 60.317 55.000 0.00 0.00 41.84 5.19
289 290 0.316689 GCGCGGGAATTAAATGGACG 60.317 55.000 8.83 0.00 0.00 4.79
290 291 0.030235 GGCGCGGGAATTAAATGGAC 59.970 55.000 8.83 0.00 0.00 4.02
291 292 1.104577 GGGCGCGGGAATTAAATGGA 61.105 55.000 8.83 0.00 0.00 3.41
292 293 1.362355 GGGCGCGGGAATTAAATGG 59.638 57.895 8.83 0.00 0.00 3.16
293 294 0.248866 GTGGGCGCGGGAATTAAATG 60.249 55.000 8.83 0.00 0.00 2.32
294 295 1.388837 GGTGGGCGCGGGAATTAAAT 61.389 55.000 8.83 0.00 0.00 1.40
295 296 2.047443 GGTGGGCGCGGGAATTAAA 61.047 57.895 8.83 0.00 0.00 1.52
296 297 2.438795 GGTGGGCGCGGGAATTAA 60.439 61.111 8.83 0.00 0.00 1.40
297 298 4.493049 GGGTGGGCGCGGGAATTA 62.493 66.667 8.83 0.00 0.00 1.40
305 306 3.670377 GTCTGTTTGGGTGGGCGC 61.670 66.667 0.00 0.00 0.00 6.53
306 307 3.353836 CGTCTGTTTGGGTGGGCG 61.354 66.667 0.00 0.00 0.00 6.13
307 308 3.670377 GCGTCTGTTTGGGTGGGC 61.670 66.667 0.00 0.00 0.00 5.36
308 309 3.353836 CGCGTCTGTTTGGGTGGG 61.354 66.667 0.00 0.00 0.00 4.61
309 310 3.353836 CCGCGTCTGTTTGGGTGG 61.354 66.667 4.92 0.00 0.00 4.61
310 311 3.353836 CCCGCGTCTGTTTGGGTG 61.354 66.667 4.92 0.00 36.86 4.61
324 325 4.770874 ACCCATTTCGTCCGCCCG 62.771 66.667 0.00 0.00 0.00 6.13
325 326 2.822701 GACCCATTTCGTCCGCCC 60.823 66.667 0.00 0.00 0.00 6.13
326 327 2.822701 GGACCCATTTCGTCCGCC 60.823 66.667 0.00 0.00 40.46 6.13
343 344 0.319469 GCGTGTTGTTTGAATGGGGG 60.319 55.000 0.00 0.00 0.00 5.40
344 345 0.319469 GGCGTGTTGTTTGAATGGGG 60.319 55.000 0.00 0.00 0.00 4.96
345 346 0.387202 TGGCGTGTTGTTTGAATGGG 59.613 50.000 0.00 0.00 0.00 4.00
346 347 1.769733 CTGGCGTGTTGTTTGAATGG 58.230 50.000 0.00 0.00 0.00 3.16
347 348 1.130955 GCTGGCGTGTTGTTTGAATG 58.869 50.000 0.00 0.00 0.00 2.67
348 349 0.031994 GGCTGGCGTGTTGTTTGAAT 59.968 50.000 0.00 0.00 0.00 2.57
349 350 1.315981 TGGCTGGCGTGTTGTTTGAA 61.316 50.000 0.00 0.00 0.00 2.69
350 351 1.315981 TTGGCTGGCGTGTTGTTTGA 61.316 50.000 0.00 0.00 0.00 2.69
351 352 0.249405 ATTGGCTGGCGTGTTGTTTG 60.249 50.000 0.00 0.00 0.00 2.93
352 353 0.463620 AATTGGCTGGCGTGTTGTTT 59.536 45.000 0.00 0.00 0.00 2.83
353 354 1.269448 CTAATTGGCTGGCGTGTTGTT 59.731 47.619 0.00 0.00 0.00 2.83
354 355 0.881118 CTAATTGGCTGGCGTGTTGT 59.119 50.000 0.00 0.00 0.00 3.32
355 356 1.135689 GTCTAATTGGCTGGCGTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
356 357 1.165270 GTCTAATTGGCTGGCGTGTT 58.835 50.000 0.00 0.00 0.00 3.32
357 358 1.019278 CGTCTAATTGGCTGGCGTGT 61.019 55.000 0.00 0.00 0.00 4.49
358 359 0.739462 TCGTCTAATTGGCTGGCGTG 60.739 55.000 0.00 0.00 0.00 5.34
359 360 0.460284 CTCGTCTAATTGGCTGGCGT 60.460 55.000 0.00 0.00 0.00 5.68
360 361 0.179111 TCTCGTCTAATTGGCTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
361 362 2.024176 TTCTCGTCTAATTGGCTGGC 57.976 50.000 0.00 0.00 0.00 4.85
362 363 3.310774 CACATTCTCGTCTAATTGGCTGG 59.689 47.826 0.00 0.00 0.00 4.85
363 364 3.242543 GCACATTCTCGTCTAATTGGCTG 60.243 47.826 0.00 0.00 0.00 4.85
398 399 6.459923 GTCTTATTGGAGGATCGCTATTCTT 58.540 40.000 0.00 0.00 34.37 2.52
399 400 5.336055 CGTCTTATTGGAGGATCGCTATTCT 60.336 44.000 0.00 0.00 34.37 2.40
508 509 1.294459 GTAGGTTTCGAGGCCGGTT 59.706 57.895 1.90 0.00 36.24 4.44
542 543 1.525995 CTGGTGAAACAGTGGGCGT 60.526 57.895 0.00 0.00 39.98 5.68
543 544 2.908073 GCTGGTGAAACAGTGGGCG 61.908 63.158 0.00 0.00 39.98 6.13
544 545 2.564721 GGCTGGTGAAACAGTGGGC 61.565 63.158 0.00 0.00 39.98 5.36
547 548 0.754957 TTGGGGCTGGTGAAACAGTG 60.755 55.000 0.00 0.00 39.98 3.66
550 551 1.152567 CCTTGGGGCTGGTGAAACA 60.153 57.895 0.00 0.00 39.98 2.83
555 556 3.579302 TGGACCTTGGGGCTGGTG 61.579 66.667 0.00 0.00 36.59 4.17
615 617 1.200020 GAATTCCAAGTTGCACCGGAG 59.800 52.381 9.46 0.00 0.00 4.63
616 618 1.243902 GAATTCCAAGTTGCACCGGA 58.756 50.000 9.46 0.00 0.00 5.14
645 649 2.296471 AGGTTATCCGATTCTACCGCTG 59.704 50.000 0.00 0.00 39.05 5.18
663 667 1.787058 ACCAAAGGAGGCCTAAAAGGT 59.213 47.619 4.42 8.00 37.80 3.50
664 668 2.604912 ACCAAAGGAGGCCTAAAAGG 57.395 50.000 4.42 7.26 38.80 3.11
665 669 3.006859 CCAAACCAAAGGAGGCCTAAAAG 59.993 47.826 4.42 0.00 31.13 2.27
666 670 2.969262 CCAAACCAAAGGAGGCCTAAAA 59.031 45.455 4.42 0.00 31.13 1.52
667 671 2.090999 ACCAAACCAAAGGAGGCCTAAA 60.091 45.455 4.42 0.00 31.13 1.85
668 672 1.501604 ACCAAACCAAAGGAGGCCTAA 59.498 47.619 4.42 0.00 31.13 2.69
670 674 0.264657 AACCAAACCAAAGGAGGCCT 59.735 50.000 3.86 3.86 33.87 5.19
671 675 1.128200 AAACCAAACCAAAGGAGGCC 58.872 50.000 0.00 0.00 0.00 5.19
673 677 3.826729 CCTCTAAACCAAACCAAAGGAGG 59.173 47.826 0.00 0.00 33.15 4.30
674 678 4.725490 TCCTCTAAACCAAACCAAAGGAG 58.275 43.478 0.00 0.00 0.00 3.69
675 679 4.799715 TCCTCTAAACCAAACCAAAGGA 57.200 40.909 0.00 0.00 0.00 3.36
676 680 6.419484 AATTCCTCTAAACCAAACCAAAGG 57.581 37.500 0.00 0.00 0.00 3.11
677 681 9.996554 ATTAAATTCCTCTAAACCAAACCAAAG 57.003 29.630 0.00 0.00 0.00 2.77
744 748 9.936759 CCATTTCTATAAACCAAAAGGCTTTAA 57.063 29.630 13.77 0.00 0.00 1.52
745 749 9.315363 TCCATTTCTATAAACCAAAAGGCTTTA 57.685 29.630 13.77 0.00 0.00 1.85
746 750 8.201242 TCCATTTCTATAAACCAAAAGGCTTT 57.799 30.769 6.68 6.68 0.00 3.51
747 751 7.790782 TCCATTTCTATAAACCAAAAGGCTT 57.209 32.000 0.00 0.00 0.00 4.35
748 752 7.978099 ATCCATTTCTATAAACCAAAAGGCT 57.022 32.000 0.00 0.00 0.00 4.58
749 753 8.478066 AGAATCCATTTCTATAAACCAAAAGGC 58.522 33.333 0.00 0.00 43.03 4.35
788 792 9.354673 TGAAATTTGGAGGATATGAACTAATCC 57.645 33.333 0.00 0.00 41.77 3.01
793 797 8.727149 TCCTATGAAATTTGGAGGATATGAACT 58.273 33.333 0.00 0.00 31.25 3.01
794 798 8.924511 TCCTATGAAATTTGGAGGATATGAAC 57.075 34.615 0.00 0.00 31.25 3.18
795 799 9.934784 TTTCCTATGAAATTTGGAGGATATGAA 57.065 29.630 11.32 3.25 36.22 2.57
796 800 9.934784 TTTTCCTATGAAATTTGGAGGATATGA 57.065 29.630 11.32 0.00 40.08 2.15
825 829 7.823745 TTTTCATTGAGTCTAGCCTCTTTTT 57.176 32.000 1.98 0.00 32.50 1.94
826 830 7.823745 TTTTTCATTGAGTCTAGCCTCTTTT 57.176 32.000 1.98 0.00 32.50 2.27
847 851 8.750515 ATTTGGTTGACATCAAAGGAATTTTT 57.249 26.923 0.00 0.00 37.63 1.94
848 852 9.844257 TTATTTGGTTGACATCAAAGGAATTTT 57.156 25.926 0.00 0.00 37.63 1.82
907 911 7.496920 TGTGGAAAATGAGATGACATGTATCTC 59.503 37.037 24.04 24.04 46.82 2.75
908 912 7.341030 TGTGGAAAATGAGATGACATGTATCT 58.659 34.615 14.05 14.05 37.59 1.98
909 913 7.558161 TGTGGAAAATGAGATGACATGTATC 57.442 36.000 0.00 2.87 0.00 2.24
910 914 7.830697 TCTTGTGGAAAATGAGATGACATGTAT 59.169 33.333 0.00 0.00 0.00 2.29
911 915 7.167535 TCTTGTGGAAAATGAGATGACATGTA 58.832 34.615 0.00 0.00 0.00 2.29
912 916 6.005823 TCTTGTGGAAAATGAGATGACATGT 58.994 36.000 0.00 0.00 0.00 3.21
913 917 6.505044 TCTTGTGGAAAATGAGATGACATG 57.495 37.500 0.00 0.00 0.00 3.21
914 918 7.713734 AATCTTGTGGAAAATGAGATGACAT 57.286 32.000 0.00 0.00 0.00 3.06
915 919 7.528996 AAATCTTGTGGAAAATGAGATGACA 57.471 32.000 0.00 0.00 0.00 3.58
945 949 9.609346 TCGTTCGTAGGATATGATTATCATAGA 57.391 33.333 18.22 7.92 42.04 1.98
948 952 9.923143 TTTTCGTTCGTAGGATATGATTATCAT 57.077 29.630 12.62 12.62 40.72 2.45
949 953 9.406828 CTTTTCGTTCGTAGGATATGATTATCA 57.593 33.333 0.00 0.00 36.31 2.15
950 954 9.622004 TCTTTTCGTTCGTAGGATATGATTATC 57.378 33.333 0.00 0.00 36.31 1.75
951 955 9.627395 CTCTTTTCGTTCGTAGGATATGATTAT 57.373 33.333 0.00 0.00 36.31 1.28
952 956 8.080417 CCTCTTTTCGTTCGTAGGATATGATTA 58.920 37.037 0.00 0.00 36.31 1.75
953 957 6.924060 CCTCTTTTCGTTCGTAGGATATGATT 59.076 38.462 0.00 0.00 36.31 2.57
954 958 6.448006 CCTCTTTTCGTTCGTAGGATATGAT 58.552 40.000 0.00 0.00 36.31 2.45
955 959 5.735354 GCCTCTTTTCGTTCGTAGGATATGA 60.735 44.000 0.00 0.00 34.12 2.15
956 960 4.444720 GCCTCTTTTCGTTCGTAGGATATG 59.555 45.833 0.00 0.00 0.00 1.78
957 961 4.501058 GGCCTCTTTTCGTTCGTAGGATAT 60.501 45.833 0.00 0.00 0.00 1.63
958 962 3.181483 GGCCTCTTTTCGTTCGTAGGATA 60.181 47.826 0.00 0.00 0.00 2.59
959 963 2.418334 GGCCTCTTTTCGTTCGTAGGAT 60.418 50.000 0.00 0.00 0.00 3.24
960 964 1.067354 GGCCTCTTTTCGTTCGTAGGA 60.067 52.381 0.00 0.00 0.00 2.94
961 965 1.067071 AGGCCTCTTTTCGTTCGTAGG 60.067 52.381 0.00 0.00 0.00 3.18
962 966 2.365408 AGGCCTCTTTTCGTTCGTAG 57.635 50.000 0.00 0.00 0.00 3.51
963 967 2.825861 AAGGCCTCTTTTCGTTCGTA 57.174 45.000 5.23 0.00 0.00 3.43
964 968 2.298163 TCTAAGGCCTCTTTTCGTTCGT 59.702 45.455 5.23 0.00 34.59 3.85
965 969 2.955614 TCTAAGGCCTCTTTTCGTTCG 58.044 47.619 5.23 0.00 34.59 3.95
966 970 3.623510 CCATCTAAGGCCTCTTTTCGTTC 59.376 47.826 5.23 0.00 34.59 3.95
967 971 3.263425 TCCATCTAAGGCCTCTTTTCGTT 59.737 43.478 5.23 0.00 34.59 3.85
968 972 2.838202 TCCATCTAAGGCCTCTTTTCGT 59.162 45.455 5.23 0.00 34.59 3.85
969 973 3.543680 TCCATCTAAGGCCTCTTTTCG 57.456 47.619 5.23 0.00 34.59 3.46
970 974 4.878971 GTCTTCCATCTAAGGCCTCTTTTC 59.121 45.833 5.23 0.00 34.59 2.29
971 975 4.624125 CGTCTTCCATCTAAGGCCTCTTTT 60.624 45.833 5.23 0.00 34.59 2.27
972 976 3.118592 CGTCTTCCATCTAAGGCCTCTTT 60.119 47.826 5.23 0.00 34.59 2.52
973 977 2.432510 CGTCTTCCATCTAAGGCCTCTT 59.567 50.000 5.23 0.00 37.03 2.85
974 978 2.035632 CGTCTTCCATCTAAGGCCTCT 58.964 52.381 5.23 0.00 0.00 3.69
975 979 1.069358 CCGTCTTCCATCTAAGGCCTC 59.931 57.143 5.23 0.00 0.00 4.70
976 980 1.123928 CCGTCTTCCATCTAAGGCCT 58.876 55.000 0.00 0.00 0.00 5.19
977 981 0.831307 ACCGTCTTCCATCTAAGGCC 59.169 55.000 0.00 0.00 0.00 5.19
978 982 2.957006 TCTACCGTCTTCCATCTAAGGC 59.043 50.000 0.00 0.00 0.00 4.35
979 983 5.793030 ATTCTACCGTCTTCCATCTAAGG 57.207 43.478 0.00 0.00 0.00 2.69
980 984 5.986135 CCAATTCTACCGTCTTCCATCTAAG 59.014 44.000 0.00 0.00 0.00 2.18
981 985 5.659525 TCCAATTCTACCGTCTTCCATCTAA 59.340 40.000 0.00 0.00 0.00 2.10
1021 1025 0.106708 TAGGGATTGGCACGCTGATC 59.893 55.000 5.13 0.00 32.98 2.92
1044 1048 1.226717 GGCCTCTCGCTGTCTTACG 60.227 63.158 0.00 0.00 37.74 3.18
1177 1181 7.486647 TGACGTTTTCTCCAATATACTCCTAC 58.513 38.462 0.00 0.00 0.00 3.18
1178 1182 7.649533 TGACGTTTTCTCCAATATACTCCTA 57.350 36.000 0.00 0.00 0.00 2.94
1179 1183 6.540438 TGACGTTTTCTCCAATATACTCCT 57.460 37.500 0.00 0.00 0.00 3.69
1180 1184 6.237755 CGTTGACGTTTTCTCCAATATACTCC 60.238 42.308 0.00 0.00 34.11 3.85
1181 1185 6.237755 CCGTTGACGTTTTCTCCAATATACTC 60.238 42.308 2.63 0.00 37.74 2.59
1182 1186 5.579511 CCGTTGACGTTTTCTCCAATATACT 59.420 40.000 2.63 0.00 37.74 2.12
1275 1279 1.547755 AGAGGAGGAGACCTGGGGA 60.548 63.158 0.00 0.00 40.73 4.81
1303 1314 1.699634 CTTTGGAGAAGGGACTCACCA 59.300 52.381 0.00 0.00 38.49 4.17
1311 1322 0.111253 ACACAGGCTTTGGAGAAGGG 59.889 55.000 5.53 0.00 0.00 3.95
1416 1448 3.966543 CACTCCACCCCACCCCAC 61.967 72.222 0.00 0.00 0.00 4.61
1421 1453 3.182996 AACCCCACTCCACCCCAC 61.183 66.667 0.00 0.00 0.00 4.61
1422 1454 3.182263 CAACCCCACTCCACCCCA 61.182 66.667 0.00 0.00 0.00 4.96
1423 1455 3.979497 CCAACCCCACTCCACCCC 61.979 72.222 0.00 0.00 0.00 4.95
1424 1456 3.979497 CCCAACCCCACTCCACCC 61.979 72.222 0.00 0.00 0.00 4.61
1460 1492 1.656095 CTCGCCAAGAAGTCGATGAAC 59.344 52.381 0.00 0.00 0.00 3.18
1487 1520 6.532657 GCGCACAGTAATTCTAACCTAAAGTA 59.467 38.462 0.30 0.00 0.00 2.24
1523 1558 0.388659 GTCATGATCGAGCAGCTCCT 59.611 55.000 17.16 4.26 0.00 3.69
1531 1566 0.741326 ACCCTCACGTCATGATCGAG 59.259 55.000 19.74 15.08 36.48 4.04
1541 1576 1.207329 GGAGATTGCTAACCCTCACGT 59.793 52.381 0.00 0.00 0.00 4.49
1573 1608 2.219445 CCATAACATGATCTGACACGCG 59.781 50.000 3.53 3.53 0.00 6.01
1575 1610 3.492383 GCTCCATAACATGATCTGACACG 59.508 47.826 0.00 0.00 0.00 4.49
1619 1654 2.873170 TAATTTCGTCAACTGCGCAG 57.127 45.000 34.89 34.89 0.00 5.18
1631 1666 6.474427 TGAAGCGTCCTGTAGTTATAATTTCG 59.526 38.462 0.00 0.00 0.00 3.46
1650 1685 1.932511 GAGCTGGAAAGATCTGAAGCG 59.067 52.381 0.00 0.00 34.11 4.68
1659 1694 7.956328 TTCTGTAATACTAGAGCTGGAAAGA 57.044 36.000 0.00 0.00 0.00 2.52
1661 1696 8.135382 ACTTTCTGTAATACTAGAGCTGGAAA 57.865 34.615 0.00 0.00 0.00 3.13
1668 1703 9.575783 GAGACCAAACTTTCTGTAATACTAGAG 57.424 37.037 0.00 0.00 0.00 2.43
1674 1709 6.866770 CAGACGAGACCAAACTTTCTGTAATA 59.133 38.462 0.00 0.00 31.50 0.98
1675 1710 5.696724 CAGACGAGACCAAACTTTCTGTAAT 59.303 40.000 0.00 0.00 31.50 1.89
1753 1788 0.861837 CGAGTTCCACACTTGACAGC 59.138 55.000 0.00 0.00 39.12 4.40
1780 1815 1.081892 CACACGCAGCTAGAGCAAAT 58.918 50.000 4.01 0.00 45.16 2.32
1826 1861 5.710099 GGTCTGTTCACCTAATTTTGGATCA 59.290 40.000 3.80 0.00 33.08 2.92
1858 1893 5.050499 CAGAGCCGATAATAGCAAAGACTTG 60.050 44.000 0.00 0.00 35.49 3.16
1875 1910 1.874019 CGTCCATCGAACAGAGCCG 60.874 63.158 0.00 0.00 42.86 5.52
1906 1985 8.031864 CAGGAGAATAGATCACGCTTTATATGT 58.968 37.037 0.00 0.00 0.00 2.29
1909 1988 6.493802 ACCAGGAGAATAGATCACGCTTTATA 59.506 38.462 0.00 0.00 0.00 0.98
1917 1996 2.101582 ACGCACCAGGAGAATAGATCAC 59.898 50.000 0.00 0.00 0.00 3.06
1935 2014 4.672409 AGATTTGCCTTGCTTTTATACGC 58.328 39.130 0.00 0.00 0.00 4.42
2035 2114 3.449377 GCTAGAAGAACCAACCTCTAGCT 59.551 47.826 18.26 0.00 45.20 3.32
2117 2197 0.391263 GCAGACCAACTAACCCGGAG 60.391 60.000 0.73 0.00 0.00 4.63
2254 2334 8.220755 AGCACAAAGTTGAGACACTTATTTTA 57.779 30.769 0.00 0.00 35.87 1.52
2277 2357 3.259902 CTTCCGTCCCAAAGTTAGTAGC 58.740 50.000 0.00 0.00 0.00 3.58
2297 2377 9.059023 ACTTAGGATGTTTATTTTCCTACTCCT 57.941 33.333 0.00 0.00 40.86 3.69
2326 2406 4.207698 AGGTTTAGGGGTGTTTGGAATT 57.792 40.909 0.00 0.00 0.00 2.17
2341 2422 8.199449 CGGATCAAGTACCATAGTTAAGGTTTA 58.801 37.037 0.00 0.00 39.31 2.01
2344 2425 5.895534 TCGGATCAAGTACCATAGTTAAGGT 59.104 40.000 0.00 0.00 41.89 3.50
2346 2427 8.888579 ATTTCGGATCAAGTACCATAGTTAAG 57.111 34.615 0.00 0.00 0.00 1.85
2348 2429 8.479689 TGAATTTCGGATCAAGTACCATAGTTA 58.520 33.333 0.00 0.00 0.00 2.24
2358 2439 2.689983 GCCCATGAATTTCGGATCAAGT 59.310 45.455 0.00 0.00 0.00 3.16
2405 2486 7.440198 TCATATTCACTGACAAAATTTTGCCA 58.560 30.769 26.94 22.14 41.79 4.92
2477 2558 2.842394 AATGGTGGCTCTCTGCGTCG 62.842 60.000 0.00 0.00 44.05 5.12
2481 2562 2.159517 CGTAAAAATGGTGGCTCTCTGC 60.160 50.000 0.00 0.00 41.94 4.26
2484 2565 3.689649 ACATCGTAAAAATGGTGGCTCTC 59.310 43.478 0.00 0.00 0.00 3.20
2617 2776 9.743581 AGCCTGGAATTTGAAAAATCATTAAAT 57.256 25.926 0.00 0.00 0.00 1.40
2637 2796 5.841957 ATTAAACTTCAATGCTAGCCTGG 57.158 39.130 13.29 0.00 0.00 4.45
2642 2801 7.756722 CCCTGAACAATTAAACTTCAATGCTAG 59.243 37.037 0.00 0.00 0.00 3.42
2792 3168 5.647658 TCCTAACAAATTCACCAGCATGTAG 59.352 40.000 0.00 0.00 0.00 2.74
2798 3174 5.904362 AGAATCCTAACAAATTCACCAGC 57.096 39.130 0.00 0.00 34.91 4.85
2813 3189 6.627087 TCAAGGTAGTTGATCAAGAATCCT 57.373 37.500 8.80 11.28 40.45 3.24
2884 3260 7.545265 TCACAACTTGTTGAAGAATTTTCAAGG 59.455 33.333 18.82 10.03 38.88 3.61
2902 3278 4.260170 GCTGGAGATCAGATTCACAACTT 58.740 43.478 0.00 0.00 46.18 2.66
2903 3279 3.262660 TGCTGGAGATCAGATTCACAACT 59.737 43.478 0.00 0.00 46.18 3.16
2904 3280 3.603532 TGCTGGAGATCAGATTCACAAC 58.396 45.455 0.00 0.00 46.18 3.32
2911 3287 2.299582 CGAAGGATGCTGGAGATCAGAT 59.700 50.000 0.00 0.00 46.18 2.90
3108 3493 1.699083 TGCCCCATCATCACGATATGT 59.301 47.619 0.00 0.00 31.20 2.29
3116 3501 1.153107 CTTCGCTGCCCCATCATCA 60.153 57.895 0.00 0.00 0.00 3.07
3119 3504 2.046023 CACTTCGCTGCCCCATCA 60.046 61.111 0.00 0.00 0.00 3.07
3161 3546 1.414158 CATCAGGAGTGGACGGGTAT 58.586 55.000 0.00 0.00 0.00 2.73
3303 3692 3.627395 GAGTACATCCATTCCACACCA 57.373 47.619 0.00 0.00 0.00 4.17
3549 3938 3.066342 TCTCCCGTTGCTTCTCGTAATAG 59.934 47.826 0.00 0.00 0.00 1.73
3585 3974 0.105224 TGCGGAGACTGTTTTCGGAA 59.895 50.000 0.95 0.00 0.00 4.30
3722 4111 6.356556 ACTAGGTATTATGTGCTGCAATTGA 58.643 36.000 10.34 0.00 0.00 2.57
3723 4112 6.564686 CGACTAGGTATTATGTGCTGCAATTG 60.565 42.308 2.77 0.00 0.00 2.32
3856 4276 9.757227 TTTCGAAGAATTTACACCAATTCATTT 57.243 25.926 0.00 0.00 45.90 2.32
3871 4291 9.919348 CAAAAATTGTTCATGTTTCGAAGAATT 57.081 25.926 0.00 0.00 43.94 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.