AutoCloner

Multiple sequence alignment - TraesCS6A01G263200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G263200	chr6A	100.000	2558	0	0	1	2558	486354607	486352050	0.000000e+00	4724.0
1	TraesCS6A01G263200	chr6A	85.173	897	91	25	1	876	453873060	453873935	0.000000e+00	881.0
2	TraesCS6A01G263200	chr6A	80.995	784	89	37	1	762	283028071	283028816	3.690000e-158	568.0
3	TraesCS6A01G263200	chr6D	96.002	1676	58	5	885	2558	346075524	346073856	0.000000e+00	2715.0
4	TraesCS6A01G263200	chr6D	97.778	45	1	0	2048	2092	15320533	15320489	7.590000e-11	78.7
5	TraesCS6A01G263200	chr6B	94.246	1147	49	8	885	2025	522063652	522062517	0.000000e+00	1736.0
6	TraesCS6A01G263200	chr6B	88.945	199	12	4	2202	2395	522062196	522062003	1.180000e-58	237.0
7	TraesCS6A01G263200	chr6B	100.000	54	0	0	2023	2076	522062404	522062351	1.620000e-17	100.0
8	TraesCS6A01G263200	chr6B	91.489	47	3	1	2436	2482	687528884	687528839	2.120000e-06	63.9
9	TraesCS6A01G263200	chr5D	86.062	904	90	18	1	884	272144057	272144944	0.000000e+00	939.0
10	TraesCS6A01G263200	chr7A	85.714	903	94	20	1	884	629760865	629761751	0.000000e+00	920.0
11	TraesCS6A01G263200	chr7A	82.762	905	120	22	1	884	126037233	126038122	0.000000e+00	774.0
12	TraesCS6A01G263200	chr7A	83.365	529	50	14	1	521	123239141	123238643	3.000000e-124	455.0
13	TraesCS6A01G263200	chr4D	85.189	898	95	22	2	875	486784276	486785159	0.000000e+00	887.0
14	TraesCS6A01G263200	chr4D	84.675	907	97	21	1	884	127547944	127547057	0.000000e+00	867.0
15	TraesCS6A01G263200	chr4D	83.648	899	106	22	3	884	37498087	37498961	0.000000e+00	808.0
16	TraesCS6A01G263200	chr7D	84.785	907	102	16	1	884	527731517	527730624	0.000000e+00	878.0
17	TraesCS6A01G263200	chr7D	83.388	909	92	27	1	884	136691329	136690455	0.000000e+00	787.0
18	TraesCS6A01G263200	chr7D	92.130	432	33	1	1	432	430101394	430101824	2.180000e-170	608.0
19	TraesCS6A01G263200	chr7D	94.340	53	2	1	2048	2100	606517389	606517440	2.110000e-11	80.5
20	TraesCS6A01G263200	chr2A	83.240	889	106	18	1	864	160729481	160728611	0.000000e+00	776.0
21	TraesCS6A01G263200	chr2A	91.837	49	3	1	2436	2483	180978936	180978888	1.640000e-07	67.6
22	TraesCS6A01G263200	chr1A	82.570	895	112	24	1	884	549141900	549142761	0.000000e+00	749.0
23	TraesCS6A01G263200	chr1A	79.539	694	90	22	210	871	38875556	38874883	5.020000e-122	448.0
24	TraesCS6A01G263200	chr1D	86.341	593	55	15	1	583	476027382	476026806	7.770000e-175	623.0
25	TraesCS6A01G263200	chr4B	94.239	243	14	0	1898	2140	656074609	656074851	3.110000e-99	372.0
26	TraesCS6A01G263200	chr5B	90.535	243	22	1	1898	2140	699687316	699687075	1.140000e-83	320.0
27	TraesCS6A01G263200	chr5B	90.526	95	7	1	2048	2140	533945804	533945898	9.610000e-25	124.0
28	TraesCS6A01G263200	chr5B	93.023	43	0	1	2356	2395	533945924	533945966	2.750000e-05	60.2
29	TraesCS6A01G263200	chr5B	80.000	85	12	4	2394	2475	676931625	676931707	9.890000e-05	58.4
30	TraesCS6A01G263200	chr3A	77.829	433	60	18	467	884	715542552	715542141	4.250000e-58	235.0
31	TraesCS6A01G263200	chr7B	90.323	93	9	0	2048	2140	585075789	585075697	3.460000e-24	122.0
32	TraesCS6A01G263200	chr7B	94.872	39	2	0	2436	2474	156958855	156958893	7.640000e-06	62.1
33	TraesCS6A01G263200	chr7B	93.023	43	0	1	2356	2395	585075671	585075629	2.750000e-05	60.2
34	TraesCS6A01G263200	chr2D	75.943	212	45	4	659	864	549030882	549031093	1.250000e-18	104.0
35	TraesCS6A01G263200	chr2D	91.837	49	3	1	2436	2483	169042511	169042559	1.640000e-07	67.6
36	TraesCS6A01G263200	chr2D	92.308	39	3	0	2436	2474	580267564	580267602	3.560000e-04	56.5
37	TraesCS6A01G263200	chr3B	76.506	166	36	2	700	862	242171618	242171783	1.260000e-13	87.9
38	TraesCS6A01G263200	chrUn	97.778	45	1	0	2048	2092	20722450	20722406	7.590000e-11	78.7
39	TraesCS6A01G263200	chr3D	79.208	101	16	5	2385	2481	582105588	582105489	5.910000e-07	65.8
40	TraesCS6A01G263200	chr3D	94.595	37	1	1	589	625	580110181	580110216	3.560000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G263200	chr6A	486352050	486354607	2557	True	4724	4724	100.000	1	2558	1	chr6A.!!$R1	2557
1	TraesCS6A01G263200	chr6A	453873060	453873935	875	False	881	881	85.173	1	876	1	chr6A.!!$F2	875
2	TraesCS6A01G263200	chr6A	283028071	283028816	745	False	568	568	80.995	1	762	1	chr6A.!!$F1	761
3	TraesCS6A01G263200	chr6D	346073856	346075524	1668	True	2715	2715	96.002	885	2558	1	chr6D.!!$R2	1673
4	TraesCS6A01G263200	chr6B	522062003	522063652	1649	True	691	1736	94.397	885	2395	3	chr6B.!!$R2	1510
5	TraesCS6A01G263200	chr5D	272144057	272144944	887	False	939	939	86.062	1	884	1	chr5D.!!$F1	883
6	TraesCS6A01G263200	chr7A	629760865	629761751	886	False	920	920	85.714	1	884	1	chr7A.!!$F2	883
7	TraesCS6A01G263200	chr7A	126037233	126038122	889	False	774	774	82.762	1	884	1	chr7A.!!$F1	883
8	TraesCS6A01G263200	chr4D	486784276	486785159	883	False	887	887	85.189	2	875	1	chr4D.!!$F2	873
9	TraesCS6A01G263200	chr4D	127547057	127547944	887	True	867	867	84.675	1	884	1	chr4D.!!$R1	883
10	TraesCS6A01G263200	chr4D	37498087	37498961	874	False	808	808	83.648	3	884	1	chr4D.!!$F1	881
11	TraesCS6A01G263200	chr7D	527730624	527731517	893	True	878	878	84.785	1	884	1	chr7D.!!$R2	883
12	TraesCS6A01G263200	chr7D	136690455	136691329	874	True	787	787	83.388	1	884	1	chr7D.!!$R1	883
13	TraesCS6A01G263200	chr2A	160728611	160729481	870	True	776	776	83.240	1	864	1	chr2A.!!$R1	863
14	TraesCS6A01G263200	chr1A	549141900	549142761	861	False	749	749	82.570	1	884	1	chr1A.!!$F1	883
15	TraesCS6A01G263200	chr1A	38874883	38875556	673	True	448	448	79.539	210	871	1	chr1A.!!$R1	661
16	TraesCS6A01G263200	chr1D	476026806	476027382	576	True	623	623	86.341	1	583	1	chr1D.!!$R1	582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
856	910	0.248012	TCAAACGGATAGCTGCGGAA	59.752	50.0	0.0	0.0	41.0	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1968	2029	2.618053	ACGTGTACTCAGGCTTAATGC	58.382	47.619	0.0	0.0	41.94	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	29	1.801309	AACGGTGGCGGAATTTGTGG	61.801	55.000	0.00	0.00	0.00	4.17
36	38	2.794350	GCGGAATTTGTGGTGTTTGAAG	59.206	45.455	0.00	0.00	0.00	3.02
49	51	3.855379	GTGTTTGAAGAACGGGTTTGTTC	59.145	43.478	0.00	0.00	46.78	3.18
66	68	9.293404	GGGTTTGTTCTATTAAAGTAGTCCTTT	57.707	33.333	0.00	0.00	45.36	3.11
264	267	0.606944	AGAACTCGTCAGCGGAGTCT	60.607	55.000	3.81	1.83	38.89	3.24
279	283	3.129988	CGGAGTCTATTTCGTACCTTGGT	59.870	47.826	0.00	0.00	0.00	3.67
387	392	2.635899	GTCCGACGAGTGTGACGT	59.364	61.111	0.00	0.00	46.58	4.34
410	416	4.400109	GACGAGCGTGCCAGTCGA	62.400	66.667	0.00	0.00	37.16	4.20
447	453	2.582978	GCCCGGGGACAGAAGTAC	59.417	66.667	25.28	0.00	0.00	2.73
451	457	3.281240	GGGGACAGAAGTACGCGA	58.719	61.111	15.93	0.00	31.29	5.87
482	500	1.302993	GGCGGTGGGAAGCAGTTTA	60.303	57.895	0.00	0.00	34.54	2.01
546	576	2.270850	GGCGTTGCTGGGTGGATA	59.729	61.111	0.00	0.00	0.00	2.59
555	585	1.074850	TGGGTGGATATGGAGGCGA	60.075	57.895	0.00	0.00	0.00	5.54
629	671	1.856265	CGAGAGTTGCTTGTTGGCCC	61.856	60.000	0.00	0.00	0.00	5.80
630	672	1.856265	GAGAGTTGCTTGTTGGCCCG	61.856	60.000	0.00	0.00	0.00	6.13
631	673	2.912025	AGTTGCTTGTTGGCCCGG	60.912	61.111	0.00	0.00	0.00	5.73
632	674	3.989787	GTTGCTTGTTGGCCCGGG	61.990	66.667	19.09	19.09	0.00	5.73
674	716	1.180029	GAAGCCAATGTGCCACAGAT	58.820	50.000	3.00	0.00	0.00	2.90
681	723	1.902765	ATGTGCCACAGATCAGCGGA	61.903	55.000	3.00	0.00	0.00	5.54
683	725	2.265739	GCCACAGATCAGCGGACA	59.734	61.111	0.00	0.00	0.00	4.02
690	732	1.137675	CAGATCAGCGGACATGAGGAA	59.862	52.381	0.00	0.00	0.00	3.36
762	812	4.440802	CGATTCAAAAATGGGCCGGAAATA	60.441	41.667	5.05	0.00	0.00	1.40
763	813	4.891992	TTCAAAAATGGGCCGGAAATAA	57.108	36.364	5.05	0.00	0.00	1.40
764	814	4.891992	TCAAAAATGGGCCGGAAATAAA	57.108	36.364	5.05	0.00	0.00	1.40
769	819	1.281656	GGGCCGGAAATAAATCGCG	59.718	57.895	5.05	0.00	0.00	5.87
816	868	0.886938	TTTGGATCAGCGCGTTGGAA	60.887	50.000	22.99	4.83	0.00	3.53
837	891	2.101209	CTTTTGTGTTCGCGCCGACT	62.101	55.000	0.00	0.00	34.89	4.18
856	910	0.248012	TCAAACGGATAGCTGCGGAA	59.752	50.000	0.00	0.00	41.00	4.30
868	922	1.939974	CTGCGGAAGAAATGGATCGA	58.060	50.000	0.00	0.00	0.00	3.59
912	966	1.671742	GGCTCTTCCAGTGGACGAA	59.328	57.895	18.22	0.81	29.65	3.85
938	992	1.508256	GGCCCTGTACTGGATAAGGT	58.492	55.000	19.66	0.00	0.00	3.50
1302	1360	0.667487	TCTTCTCCAAGCGCTTCGTG	60.667	55.000	22.21	15.29	0.00	4.35
1380	1438	1.679898	CAAGGACCTCAGGACCACC	59.320	63.158	15.24	4.12	39.89	4.61
1588	1646	4.130118	CAGTGTAGGAGCAGAAACAGTTT	58.870	43.478	0.00	0.00	0.00	2.66
1631	1691	7.533426	AGTTTGATTGATTCATGTAGCTGTTC	58.467	34.615	0.00	0.00	33.34	3.18
1793	1854	8.442374	TCCAGTGGGTAATATTATAGGGAAAAC	58.558	37.037	9.92	0.00	34.93	2.43
1799	1860	8.996271	GGGTAATATTATAGGGAAAACGTTCAG	58.004	37.037	0.00	0.00	35.25	3.02
1803	1864	9.675464	AATATTATAGGGAAAACGTTCAGTTGA	57.325	29.630	0.00	0.00	43.37	3.18
1804	1865	9.847224	ATATTATAGGGAAAACGTTCAGTTGAT	57.153	29.630	0.00	0.00	43.37	2.57
1884	1945	9.685276	ATTTTGTCAAGTCTAATGTGGATATGA	57.315	29.630	0.00	0.00	0.00	2.15
1951	2012	5.130292	TCTGAACTGTTTAGGAGTAACGG	57.870	43.478	11.76	0.00	37.77	4.44
1952	2013	4.586001	TCTGAACTGTTTAGGAGTAACGGT	59.414	41.667	11.76	0.00	44.69	4.83
1968	2029	8.601476	GGAGTAACGGTTAAATATCAGAAAGTG	58.399	37.037	1.47	0.00	0.00	3.16
1986	2047	3.600388	AGTGCATTAAGCCTGAGTACAC	58.400	45.455	0.00	0.00	44.83	2.90
2093	2333	6.430000	CACAAGTAATGGCTTAGTAAGGTGTT	59.570	38.462	11.84	0.00	0.00	3.32
2142	2382	7.380536	TCAGAAAATTGGTGAATGATTTCCAG	58.619	34.615	3.97	0.00	0.00	3.86
2205	2445	9.717942	GATCCTGATGCTCTATAAATGTTAACT	57.282	33.333	7.22	0.00	0.00	2.24
2243	2483	6.128282	CGTTGAGAGTTTAACTGCATGGTAAT	60.128	38.462	0.93	0.00	0.00	1.89
2280	2520	4.141711	TGGTTAGCTGAAGTGTTGTCTCTT	60.142	41.667	0.00	0.00	0.00	2.85
2317	2557	3.576078	TGTGTGTGGAACTGGAAGAAT	57.424	42.857	0.00	0.00	38.04	2.40
2411	2656	2.234908	GTCCTCCCTCCGATCCATATTG	59.765	54.545	0.00	0.00	0.00	1.90
2421	2666	6.039717	CCTCCGATCCATATTGATTGTTGTTT	59.960	38.462	3.89	0.00	0.00	2.83
2473	2718	5.715279	CAGTTAATATGGATCGGAGGGAGTA	59.285	44.000	0.00	0.00	0.00	2.59
2477	2722	2.953284	TGGATCGGAGGGAGTAGTAG	57.047	55.000	0.00	0.00	0.00	2.57
2497	2743	7.640597	AGTAGTTTTTGACTGCCTAAGTTTT	57.359	32.000	0.00	0.00	41.40	2.43
2503	2749	7.589958	TTTTGACTGCCTAAGTTTTTCCATA	57.410	32.000	0.00	0.00	40.07	2.74
2510	2756	7.311675	ACTGCCTAAGTTTTTCCATATACTGGA	60.312	37.037	1.15	1.15	44.49	3.86
2541	2787	4.322080	TTCTGTTATGTCCTATGGCTCG	57.678	45.455	0.00	0.00	0.00	5.03

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	29	3.497297	ACAAACCCGTTCTTCAAACAC	57.503	42.857	0.00	0.00	0.00	3.32
36	38	8.315391	ACTACTTTAATAGAACAAACCCGTTC	57.685	34.615	0.00	0.00	44.63	3.95
66	68	2.431057	GAGCGGGTATTTCCTTCTCTGA	59.569	50.000	0.00	0.00	34.39	3.27
264	267	6.757237	TGACAGTTTACCAAGGTACGAAATA	58.243	36.000	0.00	0.00	0.00	1.40
279	283	3.252215	CCCGCAATCTGTTTGACAGTTTA	59.748	43.478	7.85	0.00	46.03	2.01
294	298	1.586154	CCTTCTTCAACGCCCGCAAT	61.586	55.000	0.00	0.00	0.00	3.56
344	348	1.045911	AGGGCAGCTAGCTGGTCTAC	61.046	60.000	38.52	24.38	43.77	2.59
432	438	2.183555	GCGTACTTCTGTCCCCGG	59.816	66.667	0.00	0.00	0.00	5.73
433	439	2.202570	CGCGTACTTCTGTCCCCG	60.203	66.667	0.00	0.00	0.00	5.73
434	440	1.139095	CTCGCGTACTTCTGTCCCC	59.861	63.158	5.77	0.00	0.00	4.81
435	441	0.456312	CACTCGCGTACTTCTGTCCC	60.456	60.000	5.77	0.00	0.00	4.46
436	442	0.456312	CCACTCGCGTACTTCTGTCC	60.456	60.000	5.77	0.00	0.00	4.02
437	443	0.456312	CCCACTCGCGTACTTCTGTC	60.456	60.000	5.77	0.00	0.00	3.51
438	444	1.585006	CCCACTCGCGTACTTCTGT	59.415	57.895	5.77	0.00	0.00	3.41
439	445	1.153823	CCCCACTCGCGTACTTCTG	60.154	63.158	5.77	0.00	0.00	3.02
440	446	2.348888	CCCCCACTCGCGTACTTCT	61.349	63.158	5.77	0.00	0.00	2.85
546	576	3.071206	AGCTGTCGTCGCCTCCAT	61.071	61.111	0.00	0.00	0.00	3.41
571	604	2.126110	GACCATTTTTGCCGGCGG	60.126	61.111	24.35	24.35	0.00	6.13
639	681	3.268647	TTCCCCTCTCACCTCCCCC	62.269	68.421	0.00	0.00	0.00	5.40
640	682	1.690985	CTTCCCCTCTCACCTCCCC	60.691	68.421	0.00	0.00	0.00	4.81
674	716	1.266178	TCTTTCCTCATGTCCGCTGA	58.734	50.000	0.00	0.00	0.00	4.26
681	723	2.832129	TCGCCTACTTCTTTCCTCATGT	59.168	45.455	0.00	0.00	0.00	3.21
683	725	2.159028	GCTCGCCTACTTCTTTCCTCAT	60.159	50.000	0.00	0.00	0.00	2.90
690	732	2.202623	CGCGCTCGCCTACTTCTT	60.203	61.111	5.56	0.00	37.98	2.52
741	791	3.998913	ATTTCCGGCCCATTTTTGAAT	57.001	38.095	0.00	0.00	0.00	2.57
762	812	2.165362	TTTTCGTCTGCGCGCGATTT	62.165	50.000	37.18	0.00	36.97	2.17
763	813	2.165362	TTTTTCGTCTGCGCGCGATT	62.165	50.000	37.18	0.00	36.97	3.34
764	814	2.663478	TTTTTCGTCTGCGCGCGAT	61.663	52.632	37.18	0.00	36.97	4.58
769	819	1.311522	CGTTCGTTTTTCGTCTGCGC	61.312	55.000	0.00	0.00	40.80	6.09
795	846	1.573932	CAACGCGCTGATCCAAACA	59.426	52.632	5.73	0.00	0.00	2.83
816	868	2.719354	GGCGCGAACACAAAAGGT	59.281	55.556	12.10	0.00	0.00	3.50
837	891	0.248012	TTCCGCAGCTATCCGTTTGA	59.752	50.000	0.00	0.00	0.00	2.69
847	901	1.673168	GATCCATTTCTTCCGCAGCT	58.327	50.000	0.00	0.00	0.00	4.24
850	904	1.651987	GTCGATCCATTTCTTCCGCA	58.348	50.000	0.00	0.00	0.00	5.69
856	910	6.780457	ATTTCAATTGGTCGATCCATTTCT	57.220	33.333	5.42	0.00	46.60	2.52
912	966	0.039618	CCAGTACAGGGCCCAAATGT	59.960	55.000	27.56	22.28	0.00	2.71
1380	1438	3.147595	TCGATGAGGGACGGCAGG	61.148	66.667	0.00	0.00	0.00	4.85
1604	1664	7.978982	ACAGCTACATGAATCAATCAAACTAC	58.021	34.615	0.00	0.00	42.54	2.73
1614	1674	5.997129	TGAACAAGAACAGCTACATGAATCA	59.003	36.000	0.00	0.00	0.00	2.57
1615	1675	6.486253	TGAACAAGAACAGCTACATGAATC	57.514	37.500	0.00	0.00	0.00	2.52
1616	1676	6.492007	CTGAACAAGAACAGCTACATGAAT	57.508	37.500	0.00	0.00	0.00	2.57
1617	1677	5.929697	CTGAACAAGAACAGCTACATGAA	57.070	39.130	0.00	0.00	0.00	2.57
1799	1860	7.985752	ACTGGGCTTTACTAGTGTTATATCAAC	59.014	37.037	5.39	0.00	0.00	3.18
1801	1862	7.670605	ACTGGGCTTTACTAGTGTTATATCA	57.329	36.000	5.39	0.00	0.00	2.15
1802	1863	8.202137	TCAACTGGGCTTTACTAGTGTTATATC	58.798	37.037	5.39	0.00	0.00	1.63
1803	1864	7.985752	GTCAACTGGGCTTTACTAGTGTTATAT	59.014	37.037	5.39	0.00	0.00	0.86
1804	1865	7.179694	AGTCAACTGGGCTTTACTAGTGTTATA	59.820	37.037	5.39	0.00	0.00	0.98
1819	1880	3.658757	TTTGCATTTAGTCAACTGGGC	57.341	42.857	0.00	0.00	0.00	5.36
1884	1945	8.122472	AGTTTTGGTTAATGTTATTAGCTGCT	57.878	30.769	7.57	7.57	0.00	4.24
1913	1974	2.826428	TCAGATCCATAACTTGCTCGC	58.174	47.619	0.00	0.00	0.00	5.03
1951	2012	9.237846	GGCTTAATGCACTTTCTGATATTTAAC	57.762	33.333	0.00	0.00	45.15	2.01
1952	2013	9.189156	AGGCTTAATGCACTTTCTGATATTTAA	57.811	29.630	0.00	0.00	45.15	1.52
1968	2029	2.618053	ACGTGTACTCAGGCTTAATGC	58.382	47.619	0.00	0.00	41.94	3.56
1986	2047	7.806014	AGTAACAACAATAGCATGGTAAAAACG	59.194	33.333	8.98	1.03	0.00	3.60
2126	2366	5.078949	ACAATGTCTGGAAATCATTCACCA	58.921	37.500	0.00	0.00	37.29	4.17
2142	2382	8.816640	ATTTGAAGACCATAAACAACAATGTC	57.183	30.769	0.00	0.00	39.40	3.06
2205	2445	3.264947	CTCTCAACGCCTGAATCATTCA	58.735	45.455	0.00	0.00	38.17	2.57
2243	2483	6.472016	TCAGCTAACCAACAGATGAACATAA	58.528	36.000	0.00	0.00	35.61	1.90
2280	2520	6.922407	CCACACACATAATTTTGATGAACACA	59.078	34.615	2.69	0.00	0.00	3.72
2446	2691	4.283467	CCCTCCGATCCATATTAACTGTCA	59.717	45.833	0.00	0.00	0.00	3.58
2463	2708	4.220163	AGTCAAAAACTACTACTCCCTCCG	59.780	45.833	0.00	0.00	36.07	4.63
2473	2718	7.640597	AAAACTTAGGCAGTCAAAAACTACT	57.359	32.000	0.00	0.00	36.07	2.57
2477	2722	6.103330	TGGAAAAACTTAGGCAGTCAAAAAC	58.897	36.000	0.00	0.00	32.94	2.43
2532	2778	4.508124	GGTAGAATGAAACACGAGCCATAG	59.492	45.833	0.00	0.00	0.00	2.23
2534	2780	3.270877	GGTAGAATGAAACACGAGCCAT	58.729	45.455	0.00	0.00	0.00	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.