Multiple sequence alignment - TraesCS6A01G262800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G262800 chr6A 100.000 2483 0 0 1 2483 485880115 485882597 0.000000e+00 4586.0
1 TraesCS6A01G262800 chr6A 92.911 395 26 2 355 747 289021304 289020910 7.700000e-160 573.0
2 TraesCS6A01G262800 chr6A 89.773 440 40 3 309 744 556287219 556286781 2.160000e-155 558.0
3 TraesCS6A01G262800 chr6A 85.326 368 40 7 2120 2483 359804726 359805083 3.900000e-98 368.0
4 TraesCS6A01G262800 chr6D 95.108 1063 41 5 856 1916 345315736 345316789 0.000000e+00 1664.0
5 TraesCS6A01G262800 chr6D 95.122 41 1 1 1923 1963 345348857 345348896 2.060000e-06 63.9
6 TraesCS6A01G262800 chr6B 93.508 1109 53 7 832 1930 521469746 521470845 0.000000e+00 1631.0
7 TraesCS6A01G262800 chr6B 88.718 195 18 3 1927 2118 521473022 521473215 4.130000e-58 235.0
8 TraesCS6A01G262800 chr3D 84.525 769 73 15 1 745 421610096 421609350 0.000000e+00 719.0
9 TraesCS6A01G262800 chr3D 97.917 48 1 0 229 276 607848543 607848496 1.580000e-12 84.2
10 TraesCS6A01G262800 chrUn 93.830 389 23 1 359 747 150873468 150873081 3.560000e-163 584.0
11 TraesCS6A01G262800 chr2B 92.138 407 30 2 339 744 413458101 413457696 7.700000e-160 573.0
12 TraesCS6A01G262800 chr2B 91.707 410 32 2 339 747 413460371 413459963 3.580000e-158 568.0
13 TraesCS6A01G262800 chr2B 89.438 445 35 8 307 744 745765884 745765445 3.610000e-153 551.0
14 TraesCS6A01G262800 chr2B 86.159 289 26 6 2198 2483 641655021 641654744 1.440000e-77 300.0
15 TraesCS6A01G262800 chr2B 78.715 249 25 13 2120 2341 254085746 254085993 9.260000e-30 141.0
16 TraesCS6A01G262800 chr2B 78.261 253 26 13 2117 2341 493576654 493576905 4.310000e-28 135.0
17 TraesCS6A01G262800 chr2A 90.909 429 33 4 322 745 367675630 367675203 2.770000e-159 571.0
18 TraesCS6A01G262800 chr2A 88.556 367 30 7 2123 2483 602654705 602654345 3.790000e-118 435.0
19 TraesCS6A01G262800 chr2A 85.799 169 17 4 2252 2419 759784649 759784811 3.280000e-39 172.0
20 TraesCS6A01G262800 chr2A 86.301 73 9 1 50 122 754605100 754605171 7.360000e-11 78.7
21 TraesCS6A01G262800 chr3B 91.367 417 33 2 322 736 409528450 409528035 3.580000e-158 568.0
22 TraesCS6A01G262800 chr3B 87.838 74 5 4 2120 2190 661418611 661418683 1.580000e-12 84.2
23 TraesCS6A01G262800 chr1B 90.824 425 36 3 322 744 60529191 60528768 1.290000e-157 566.0
24 TraesCS6A01G262800 chr7A 86.316 475 59 6 275 745 287817592 287817120 1.700000e-141 512.0
25 TraesCS6A01G262800 chr1A 85.197 304 34 7 2120 2419 63334795 63335091 4.010000e-78 302.0
26 TraesCS6A01G262800 chr1A 85.606 132 16 3 1968 2098 577094125 577093996 4.310000e-28 135.0
27 TraesCS6A01G262800 chr1A 84.962 133 15 4 1968 2098 577194917 577194788 2.000000e-26 130.0
28 TraesCS6A01G262800 chr5D 81.935 310 42 9 2119 2419 131177876 131177572 1.470000e-62 250.0
29 TraesCS6A01G262800 chr5D 85.714 140 16 3 1969 2107 369379841 369379705 7.160000e-31 145.0
30 TraesCS6A01G262800 chr5A 78.400 250 25 13 2120 2341 436194512 436194760 4.310000e-28 135.0
31 TraesCS6A01G262800 chr1D 84.672 137 18 3 1968 2103 480624274 480624140 1.550000e-27 134.0
32 TraesCS6A01G262800 chr1D 84.672 137 17 3 1968 2103 480625604 480625471 1.550000e-27 134.0
33 TraesCS6A01G262800 chr1D 84.672 137 18 3 1968 2103 480626268 480626134 1.550000e-27 134.0
34 TraesCS6A01G262800 chr1D 84.848 132 16 3 1968 2098 480623613 480623485 2.000000e-26 130.0
35 TraesCS6A01G262800 chr1D 83.942 137 17 3 1968 2103 480622950 480622818 2.590000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G262800 chr6A 485880115 485882597 2482 False 4586.0 4586 100.0000 1 2483 1 chr6A.!!$F2 2482
1 TraesCS6A01G262800 chr6D 345315736 345316789 1053 False 1664.0 1664 95.1080 856 1916 1 chr6D.!!$F1 1060
2 TraesCS6A01G262800 chr6B 521469746 521473215 3469 False 933.0 1631 91.1130 832 2118 2 chr6B.!!$F1 1286
3 TraesCS6A01G262800 chr3D 421609350 421610096 746 True 719.0 719 84.5250 1 745 1 chr3D.!!$R1 744
4 TraesCS6A01G262800 chr2B 413457696 413460371 2675 True 570.5 573 91.9225 339 747 2 chr2B.!!$R3 408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.034756 TGCCACTTGCGTGATACACT 59.965 50.0 0.0 0.0 43.97 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 6599 0.452987 CCTCCGCCAATGTTGTCATG 59.547 55.0 0.0 0.0 34.19 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.451504 GGTCGATCTTACCGCTACG 57.548 57.895 0.00 0.00 0.00 3.51
47 48 2.606961 CGCAGAACCACGTGCACAT 61.607 57.895 18.64 0.00 39.83 3.21
48 49 1.654220 GCAGAACCACGTGCACATT 59.346 52.632 18.64 4.97 39.62 2.71
122 123 3.256833 CGCACGCATCGATCTGCA 61.257 61.111 11.30 0.00 42.40 4.41
127 128 2.248835 CGCATCGATCTGCATGCCA 61.249 57.895 16.68 1.32 42.15 4.92
133 134 1.063649 GATCTGCATGCCACTTGCG 59.936 57.895 16.68 0.00 45.60 4.85
140 141 3.549412 ATGCCACTTGCGTGATACA 57.451 47.368 0.00 0.00 43.97 2.29
142 143 0.034756 TGCCACTTGCGTGATACACT 59.965 50.000 0.00 0.00 43.97 3.55
151 152 2.202557 TGATACACTGTCGCGGCG 60.203 61.111 17.70 17.70 0.00 6.46
177 178 3.810148 GATCTCGTCGAGACTTCCG 57.190 57.895 26.46 0.00 41.76 4.30
178 179 0.316360 GATCTCGTCGAGACTTCCGC 60.316 60.000 26.46 8.78 41.76 5.54
179 180 0.745128 ATCTCGTCGAGACTTCCGCT 60.745 55.000 26.46 6.77 41.76 5.52
180 181 1.226156 CTCGTCGAGACTTCCGCTG 60.226 63.158 17.52 0.00 0.00 5.18
181 182 2.876645 CGTCGAGACTTCCGCTGC 60.877 66.667 1.56 0.00 0.00 5.25
182 183 2.258591 GTCGAGACTTCCGCTGCA 59.741 61.111 0.00 0.00 0.00 4.41
183 184 2.089349 GTCGAGACTTCCGCTGCAC 61.089 63.158 0.00 0.00 0.00 4.57
184 185 3.175240 CGAGACTTCCGCTGCACG 61.175 66.667 0.00 2.27 43.15 5.34
185 186 3.482783 GAGACTTCCGCTGCACGC 61.483 66.667 0.00 1.21 41.76 5.34
195 196 2.811317 CTGCACGCCGAGGACTTC 60.811 66.667 0.00 0.00 0.00 3.01
265 266 4.806247 CGATAGCTTCCACGAGAGAAATTT 59.194 41.667 0.00 0.00 0.00 1.82
286 309 3.314553 TCTCAAACCGAATTCTCACGAC 58.685 45.455 3.52 0.00 0.00 4.34
288 311 1.126113 CAAACCGAATTCTCACGACCG 59.874 52.381 3.52 0.00 0.00 4.79
306 329 1.796796 GCCGTCTTTGCACTGGATC 59.203 57.895 0.00 0.00 0.00 3.36
357 2649 1.802069 GACCTCTTCGAAGCTTGCTT 58.198 50.000 20.56 7.65 0.00 3.91
373 2666 5.534654 AGCTTGCTTTGATACCACTTGTTAA 59.465 36.000 0.00 0.00 0.00 2.01
393 2686 6.829298 TGTTAAAATAAATCCGAGGCATACCA 59.171 34.615 0.00 0.00 39.06 3.25
407 2700 3.306989 GGCATACCATTGATCATCCGAGA 60.307 47.826 0.00 0.00 35.26 4.04
409 2702 4.940046 GCATACCATTGATCATCCGAGAAT 59.060 41.667 0.00 0.00 0.00 2.40
428 2721 1.812235 TCAAGCAATCACACGAGCAT 58.188 45.000 0.00 0.00 0.00 3.79
431 2724 2.034104 AGCAATCACACGAGCATGAT 57.966 45.000 0.00 0.00 37.14 2.45
456 2749 4.630069 CCGAGATTTGTTAACGAGGTTCAT 59.370 41.667 0.26 0.00 0.00 2.57
498 2791 1.207791 CCTGACTATGGGCACTCCTT 58.792 55.000 0.00 0.00 36.20 3.36
519 2812 2.159014 TCCCATGACACCGCTACAATAC 60.159 50.000 0.00 0.00 0.00 1.89
527 2820 1.153529 CGCTACAATACCGCACCCA 60.154 57.895 0.00 0.00 0.00 4.51
533 2826 2.656069 AATACCGCACCCAGTCGCT 61.656 57.895 0.00 0.00 0.00 4.93
587 2881 4.389890 ACGTTCCGGTGCTATTATGTTA 57.610 40.909 0.00 0.00 0.00 2.41
617 2911 1.304713 ATCGTGTGTCTACCCCCGT 60.305 57.895 0.00 0.00 0.00 5.28
630 2924 6.012245 TGTCTACCCCCGTTATATATGAGAGA 60.012 42.308 0.00 0.00 0.00 3.10
670 2964 5.487488 TCCTATTAGGACACAACTCCACATT 59.513 40.000 8.42 0.00 40.06 2.71
738 3032 8.186163 CCTTGTACACTATATTCGACACAACTA 58.814 37.037 0.00 0.00 0.00 2.24
739 3033 9.563898 CTTGTACACTATATTCGACACAACTAA 57.436 33.333 0.00 0.00 0.00 2.24
747 3041 9.537848 CTATATTCGACACAACTAAAACAAACC 57.462 33.333 0.00 0.00 0.00 3.27
748 3042 4.619437 TCGACACAACTAAAACAAACCC 57.381 40.909 0.00 0.00 0.00 4.11
749 3043 3.063725 TCGACACAACTAAAACAAACCCG 59.936 43.478 0.00 0.00 0.00 5.28
750 3044 3.063725 CGACACAACTAAAACAAACCCGA 59.936 43.478 0.00 0.00 0.00 5.14
751 3045 4.594136 GACACAACTAAAACAAACCCGAG 58.406 43.478 0.00 0.00 0.00 4.63
752 3046 3.181494 ACACAACTAAAACAAACCCGAGC 60.181 43.478 0.00 0.00 0.00 5.03
753 3047 3.018149 ACAACTAAAACAAACCCGAGCA 58.982 40.909 0.00 0.00 0.00 4.26
754 3048 3.634910 ACAACTAAAACAAACCCGAGCAT 59.365 39.130 0.00 0.00 0.00 3.79
755 3049 4.098807 ACAACTAAAACAAACCCGAGCATT 59.901 37.500 0.00 0.00 0.00 3.56
756 3050 4.929819 ACTAAAACAAACCCGAGCATTT 57.070 36.364 0.00 0.00 0.00 2.32
757 3051 5.270893 ACTAAAACAAACCCGAGCATTTT 57.729 34.783 0.00 0.00 0.00 1.82
758 3052 5.666462 ACTAAAACAAACCCGAGCATTTTT 58.334 33.333 0.00 0.00 0.00 1.94
779 3073 3.788434 TCTTTCGTGTTTTGATCGAGC 57.212 42.857 0.00 0.00 35.13 5.03
780 3074 3.127589 TCTTTCGTGTTTTGATCGAGCA 58.872 40.909 0.00 0.00 35.13 4.26
781 3075 3.745975 TCTTTCGTGTTTTGATCGAGCAT 59.254 39.130 3.25 0.00 35.13 3.79
782 3076 4.213270 TCTTTCGTGTTTTGATCGAGCATT 59.787 37.500 3.25 0.00 35.13 3.56
783 3077 3.722555 TCGTGTTTTGATCGAGCATTC 57.277 42.857 3.25 0.00 0.00 2.67
784 3078 2.415168 TCGTGTTTTGATCGAGCATTCC 59.585 45.455 3.25 0.00 0.00 3.01
785 3079 2.159430 CGTGTTTTGATCGAGCATTCCA 59.841 45.455 3.25 0.00 0.00 3.53
786 3080 3.492313 GTGTTTTGATCGAGCATTCCAC 58.508 45.455 3.25 7.73 0.00 4.02
787 3081 3.058293 GTGTTTTGATCGAGCATTCCACA 60.058 43.478 3.25 2.38 0.00 4.17
788 3082 3.567585 TGTTTTGATCGAGCATTCCACAA 59.432 39.130 3.25 0.00 0.00 3.33
789 3083 4.218200 TGTTTTGATCGAGCATTCCACAAT 59.782 37.500 3.25 0.00 0.00 2.71
790 3084 4.621068 TTTGATCGAGCATTCCACAATC 57.379 40.909 3.25 0.00 0.00 2.67
791 3085 3.548745 TGATCGAGCATTCCACAATCT 57.451 42.857 0.00 0.00 0.00 2.40
792 3086 3.461061 TGATCGAGCATTCCACAATCTC 58.539 45.455 0.00 0.00 0.00 2.75
793 3087 1.926561 TCGAGCATTCCACAATCTCG 58.073 50.000 3.84 3.84 39.03 4.04
794 3088 0.933097 CGAGCATTCCACAATCTCGG 59.067 55.000 0.00 0.00 36.75 4.63
795 3089 1.471501 CGAGCATTCCACAATCTCGGA 60.472 52.381 0.00 0.00 36.75 4.55
796 3090 1.936547 GAGCATTCCACAATCTCGGAC 59.063 52.381 0.00 0.00 0.00 4.79
797 3091 0.652592 GCATTCCACAATCTCGGACG 59.347 55.000 0.00 0.00 0.00 4.79
798 3092 0.652592 CATTCCACAATCTCGGACGC 59.347 55.000 0.00 0.00 0.00 5.19
799 3093 0.462047 ATTCCACAATCTCGGACGCC 60.462 55.000 0.00 0.00 0.00 5.68
800 3094 1.822114 TTCCACAATCTCGGACGCCA 61.822 55.000 0.00 0.00 0.00 5.69
801 3095 1.153369 CCACAATCTCGGACGCCAT 60.153 57.895 0.00 0.00 0.00 4.40
802 3096 0.104120 CCACAATCTCGGACGCCATA 59.896 55.000 0.00 0.00 0.00 2.74
803 3097 1.270305 CCACAATCTCGGACGCCATAT 60.270 52.381 0.00 0.00 0.00 1.78
804 3098 2.061773 CACAATCTCGGACGCCATATC 58.938 52.381 0.00 0.00 0.00 1.63
805 3099 1.000955 ACAATCTCGGACGCCATATCC 59.999 52.381 0.00 0.00 0.00 2.59
806 3100 0.608640 AATCTCGGACGCCATATCCC 59.391 55.000 0.00 0.00 31.99 3.85
807 3101 1.258445 ATCTCGGACGCCATATCCCC 61.258 60.000 0.00 0.00 31.99 4.81
808 3102 2.123208 TCGGACGCCATATCCCCA 60.123 61.111 0.00 0.00 31.99 4.96
809 3103 1.535444 TCGGACGCCATATCCCCAT 60.535 57.895 0.00 0.00 31.99 4.00
810 3104 1.125093 TCGGACGCCATATCCCCATT 61.125 55.000 0.00 0.00 31.99 3.16
811 3105 0.673644 CGGACGCCATATCCCCATTC 60.674 60.000 0.00 0.00 31.99 2.67
812 3106 0.322546 GGACGCCATATCCCCATTCC 60.323 60.000 0.00 0.00 0.00 3.01
813 3107 0.322546 GACGCCATATCCCCATTCCC 60.323 60.000 0.00 0.00 0.00 3.97
814 3108 1.000896 CGCCATATCCCCATTCCCC 60.001 63.158 0.00 0.00 0.00 4.81
815 3109 1.788518 CGCCATATCCCCATTCCCCA 61.789 60.000 0.00 0.00 0.00 4.96
816 3110 0.251787 GCCATATCCCCATTCCCCAC 60.252 60.000 0.00 0.00 0.00 4.61
817 3111 1.460218 CCATATCCCCATTCCCCACT 58.540 55.000 0.00 0.00 0.00 4.00
818 3112 2.642982 CCATATCCCCATTCCCCACTA 58.357 52.381 0.00 0.00 0.00 2.74
819 3113 2.578021 CCATATCCCCATTCCCCACTAG 59.422 54.545 0.00 0.00 0.00 2.57
820 3114 3.260205 CATATCCCCATTCCCCACTAGT 58.740 50.000 0.00 0.00 0.00 2.57
821 3115 4.435137 CATATCCCCATTCCCCACTAGTA 58.565 47.826 0.00 0.00 0.00 1.82
822 3116 2.185663 TCCCCATTCCCCACTAGTAC 57.814 55.000 0.00 0.00 0.00 2.73
823 3117 1.366787 TCCCCATTCCCCACTAGTACA 59.633 52.381 0.00 0.00 0.00 2.90
824 3118 2.021441 TCCCCATTCCCCACTAGTACAT 60.021 50.000 0.00 0.00 0.00 2.29
825 3119 3.210305 TCCCCATTCCCCACTAGTACATA 59.790 47.826 0.00 0.00 0.00 2.29
826 3120 3.326880 CCCCATTCCCCACTAGTACATAC 59.673 52.174 0.00 0.00 0.00 2.39
827 3121 4.232091 CCCATTCCCCACTAGTACATACT 58.768 47.826 0.00 0.00 40.24 2.12
828 3122 4.283722 CCCATTCCCCACTAGTACATACTC 59.716 50.000 0.00 0.00 37.73 2.59
829 3123 4.283722 CCATTCCCCACTAGTACATACTCC 59.716 50.000 0.00 0.00 37.73 3.85
830 3124 3.607490 TCCCCACTAGTACATACTCCC 57.393 52.381 0.00 0.00 37.73 4.30
839 3133 4.727792 AGTACATACTCCCTACCTCTCC 57.272 50.000 0.00 0.00 0.00 3.71
840 3134 4.052922 AGTACATACTCCCTACCTCTCCA 58.947 47.826 0.00 0.00 0.00 3.86
850 3144 0.409876 TACCTCTCCACAGTCAGCCT 59.590 55.000 0.00 0.00 0.00 4.58
885 3184 1.069513 CCACCAGACCTGAAACGTACA 59.930 52.381 0.00 0.00 0.00 2.90
903 3202 2.426752 CAACGCAGGCGAAAACCG 60.427 61.111 21.62 0.00 42.83 4.44
937 3236 1.750930 CATGAGGCCGCTCACCTAT 59.249 57.895 8.34 0.00 37.77 2.57
968 3267 0.247460 CCTGCTCATCTCGTCAACCA 59.753 55.000 0.00 0.00 0.00 3.67
978 3277 1.444553 CGTCAACCAGCGAGTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
979 3278 1.079750 GTCAACCAGCGAGTCCTCC 60.080 63.158 0.00 0.00 0.00 4.30
980 3279 2.125912 CAACCAGCGAGTCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
1070 3370 2.432628 GACCTTCCACGCCGACAG 60.433 66.667 0.00 0.00 0.00 3.51
1132 3432 4.830765 CAAAGATCGCGGGGGCGA 62.831 66.667 13.82 13.82 46.30 5.54
1419 3719 1.004440 GTTCAGGAAGCTGGCGACT 60.004 57.895 0.00 0.00 0.00 4.18
1534 3834 3.217626 GGACAGGCAGGATCAAATAAGG 58.782 50.000 0.00 0.00 0.00 2.69
1561 3861 3.119388 CCGATGATTTCCATTGCAAGTGT 60.119 43.478 4.94 0.00 35.69 3.55
1578 3878 6.533367 TGCAAGTGTGTGGTTTTTAATCTTTC 59.467 34.615 0.00 0.00 0.00 2.62
1591 3891 3.982576 AATCTTTCCGTGCTTTCGTTT 57.017 38.095 0.00 0.00 0.00 3.60
1592 3892 3.537793 ATCTTTCCGTGCTTTCGTTTC 57.462 42.857 0.00 0.00 0.00 2.78
1593 3893 1.259507 TCTTTCCGTGCTTTCGTTTCG 59.740 47.619 0.00 0.00 0.00 3.46
1594 3894 1.004292 CTTTCCGTGCTTTCGTTTCGT 60.004 47.619 0.00 0.00 0.00 3.85
1595 3895 1.008329 TTCCGTGCTTTCGTTTCGTT 58.992 45.000 0.00 0.00 0.00 3.85
1625 3925 0.179059 TGATTGTGTGGTGAGTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
1636 3936 3.044059 GAGTGCGTTGCATGCCTCC 62.044 63.158 16.68 1.48 41.91 4.30
1697 3997 1.382692 GCCAGCTTGGAATCTGCTCC 61.383 60.000 6.40 0.00 40.96 4.70
1892 4197 0.108898 GCTGATCAGTGCGAGTCTGT 60.109 55.000 23.38 0.00 34.86 3.41
1925 4230 6.456125 AGAGGGCTATGGATATTCATATGGA 58.544 40.000 4.09 0.00 0.00 3.41
1955 6440 0.955178 AGAGTGCGGATGATCCTACG 59.045 55.000 10.18 0.00 33.30 3.51
1961 6446 0.941463 CGGATGATCCTACGCAGTGC 60.941 60.000 10.18 4.58 45.73 4.40
1962 6447 0.601311 GGATGATCCTACGCAGTGCC 60.601 60.000 10.11 0.00 45.73 5.01
1973 6458 3.683937 CAGTGCCGGGCCCAAAAG 61.684 66.667 24.92 8.28 0.00 2.27
1994 6479 9.528018 CAAAAGGTCAAATTCTGCTTAAACTTA 57.472 29.630 0.00 0.00 0.00 2.24
2060 6545 3.816967 AATTTCTCTAGGGTAGGGGGT 57.183 47.619 0.00 0.00 0.00 4.95
2061 6546 2.563039 TTTCTCTAGGGTAGGGGGTG 57.437 55.000 0.00 0.00 0.00 4.61
2063 6548 1.459730 CTCTAGGGTAGGGGGTGGC 60.460 68.421 0.00 0.00 0.00 5.01
2065 6550 2.041596 TAGGGTAGGGGGTGGCAC 59.958 66.667 9.70 9.70 0.00 5.01
2066 6551 2.833151 CTAGGGTAGGGGGTGGCACA 62.833 65.000 20.82 0.00 0.00 4.57
2067 6552 2.833151 TAGGGTAGGGGGTGGCACAG 62.833 65.000 20.82 0.00 41.80 3.66
2085 6573 2.286121 CCCCCTTGGCCCTAGTGA 60.286 66.667 0.00 0.00 0.00 3.41
2098 6586 0.459237 CTAGTGAAGCTCCGCCACTG 60.459 60.000 16.38 7.12 40.86 3.66
2099 6587 0.898326 TAGTGAAGCTCCGCCACTGA 60.898 55.000 16.38 3.91 40.86 3.41
2104 6592 0.687757 AAGCTCCGCCACTGATCCTA 60.688 55.000 0.00 0.00 0.00 2.94
2111 6599 1.303309 GCCACTGATCCTATGCACAC 58.697 55.000 0.00 0.00 0.00 3.82
2113 6601 2.747467 GCCACTGATCCTATGCACACAT 60.747 50.000 0.00 0.00 40.49 3.21
2118 6606 4.193865 CTGATCCTATGCACACATGACAA 58.806 43.478 0.00 0.00 37.04 3.18
2119 6607 3.940852 TGATCCTATGCACACATGACAAC 59.059 43.478 0.00 0.00 37.04 3.32
2120 6608 3.415457 TCCTATGCACACATGACAACA 57.585 42.857 0.00 0.00 37.04 3.33
2121 6609 3.954200 TCCTATGCACACATGACAACAT 58.046 40.909 0.00 0.44 37.04 2.71
2122 6610 4.334552 TCCTATGCACACATGACAACATT 58.665 39.130 0.00 0.00 37.04 2.71
2123 6611 4.156373 TCCTATGCACACATGACAACATTG 59.844 41.667 0.00 0.00 37.04 2.82
2124 6612 2.797074 TGCACACATGACAACATTGG 57.203 45.000 0.00 0.00 34.15 3.16
2125 6613 1.269673 TGCACACATGACAACATTGGC 60.270 47.619 0.00 0.00 34.15 4.52
2126 6614 1.688793 CACACATGACAACATTGGCG 58.311 50.000 0.00 0.00 39.74 5.69
2127 6615 0.597568 ACACATGACAACATTGGCGG 59.402 50.000 0.00 0.00 39.74 6.13
2128 6616 0.880441 CACATGACAACATTGGCGGA 59.120 50.000 0.00 0.00 39.74 5.54
2129 6617 1.135603 CACATGACAACATTGGCGGAG 60.136 52.381 0.00 0.00 39.74 4.63
2130 6618 0.452987 CATGACAACATTGGCGGAGG 59.547 55.000 0.00 0.00 39.74 4.30
2131 6619 0.327924 ATGACAACATTGGCGGAGGA 59.672 50.000 0.00 0.00 39.74 3.71
2132 6620 0.605319 TGACAACATTGGCGGAGGAC 60.605 55.000 0.00 0.00 39.74 3.85
2133 6621 1.303317 ACAACATTGGCGGAGGACC 60.303 57.895 0.00 0.00 0.00 4.46
2134 6622 2.046285 CAACATTGGCGGAGGACCC 61.046 63.158 0.00 0.00 0.00 4.46
2135 6623 3.282374 AACATTGGCGGAGGACCCC 62.282 63.158 0.00 0.00 0.00 4.95
2136 6624 3.411517 CATTGGCGGAGGACCCCT 61.412 66.667 0.00 0.00 36.03 4.79
2137 6625 3.411517 ATTGGCGGAGGACCCCTG 61.412 66.667 0.00 0.00 31.76 4.45
2138 6626 3.943137 ATTGGCGGAGGACCCCTGA 62.943 63.158 0.00 0.00 31.76 3.86
2139 6627 3.943137 TTGGCGGAGGACCCCTGAT 62.943 63.158 0.00 0.00 31.76 2.90
2140 6628 3.866582 GGCGGAGGACCCCTGATG 61.867 72.222 0.00 0.00 31.76 3.07
2141 6629 3.866582 GCGGAGGACCCCTGATGG 61.867 72.222 0.00 0.00 31.76 3.51
2151 6639 4.007457 CCTGATGGGCAAGGTGTG 57.993 61.111 0.00 0.00 0.00 3.82
2152 6640 1.679977 CCTGATGGGCAAGGTGTGG 60.680 63.158 0.00 0.00 0.00 4.17
2159 6647 4.030452 GCAAGGTGTGGCAGTCGC 62.030 66.667 0.00 0.00 37.44 5.19
2169 6657 2.280797 GCAGTCGCCACACCTTGA 60.281 61.111 0.00 0.00 0.00 3.02
2170 6658 1.672356 GCAGTCGCCACACCTTGAT 60.672 57.895 0.00 0.00 0.00 2.57
2171 6659 1.237285 GCAGTCGCCACACCTTGATT 61.237 55.000 0.00 0.00 0.00 2.57
2172 6660 1.238439 CAGTCGCCACACCTTGATTT 58.762 50.000 0.00 0.00 0.00 2.17
2173 6661 1.069022 CAGTCGCCACACCTTGATTTG 60.069 52.381 0.00 0.00 0.00 2.32
2174 6662 0.240945 GTCGCCACACCTTGATTTGG 59.759 55.000 0.00 0.00 0.00 3.28
2175 6663 0.179004 TCGCCACACCTTGATTTGGT 60.179 50.000 0.00 0.00 38.53 3.67
2176 6664 0.240945 CGCCACACCTTGATTTGGTC 59.759 55.000 0.00 0.00 35.28 4.02
2177 6665 0.603065 GCCACACCTTGATTTGGTCC 59.397 55.000 0.00 0.00 35.28 4.46
2178 6666 1.993956 CCACACCTTGATTTGGTCCA 58.006 50.000 0.00 0.00 35.28 4.02
2179 6667 2.315176 CCACACCTTGATTTGGTCCAA 58.685 47.619 0.00 0.00 35.28 3.53
2180 6668 2.697751 CCACACCTTGATTTGGTCCAAA 59.302 45.455 19.29 19.29 37.75 3.28
2181 6669 3.324556 CCACACCTTGATTTGGTCCAAAT 59.675 43.478 26.65 26.65 45.25 2.32
2182 6670 4.202346 CCACACCTTGATTTGGTCCAAATT 60.202 41.667 26.94 13.52 43.05 1.82
2183 6671 5.367302 CACACCTTGATTTGGTCCAAATTT 58.633 37.500 26.94 10.44 43.05 1.82
2184 6672 5.821995 CACACCTTGATTTGGTCCAAATTTT 59.178 36.000 26.94 9.73 43.05 1.82
2185 6673 6.318396 CACACCTTGATTTGGTCCAAATTTTT 59.682 34.615 26.94 9.37 43.05 1.94
2211 6699 7.950108 ATATATACGCTTCGTTCACTAATCG 57.050 36.000 0.00 0.00 41.54 3.34
2212 6700 0.989890 ACGCTTCGTTCACTAATCGC 59.010 50.000 0.00 0.00 36.35 4.58
2213 6701 1.269166 CGCTTCGTTCACTAATCGCT 58.731 50.000 0.00 0.00 0.00 4.93
2214 6702 2.159476 ACGCTTCGTTCACTAATCGCTA 60.159 45.455 0.00 0.00 36.35 4.26
2215 6703 2.464380 CGCTTCGTTCACTAATCGCTAG 59.536 50.000 0.00 0.00 0.00 3.42
2216 6704 2.789893 GCTTCGTTCACTAATCGCTAGG 59.210 50.000 0.00 0.00 31.14 3.02
2217 6705 3.488721 GCTTCGTTCACTAATCGCTAGGA 60.489 47.826 0.00 0.00 31.14 2.94
2218 6706 4.793353 GCTTCGTTCACTAATCGCTAGGAT 60.793 45.833 0.00 0.00 36.78 3.24
2219 6707 4.913335 TCGTTCACTAATCGCTAGGATT 57.087 40.909 10.20 10.20 46.86 3.01
2220 6708 5.258456 TCGTTCACTAATCGCTAGGATTT 57.742 39.130 10.50 0.00 42.77 2.17
2221 6709 5.657474 TCGTTCACTAATCGCTAGGATTTT 58.343 37.500 10.50 0.00 42.77 1.82
2222 6710 5.518847 TCGTTCACTAATCGCTAGGATTTTG 59.481 40.000 10.50 9.01 42.77 2.44
2223 6711 5.276868 CGTTCACTAATCGCTAGGATTTTGG 60.277 44.000 10.50 6.05 42.77 3.28
2224 6712 4.703897 TCACTAATCGCTAGGATTTTGGG 58.296 43.478 10.50 6.97 42.77 4.12
2225 6713 4.407621 TCACTAATCGCTAGGATTTTGGGA 59.592 41.667 10.50 8.57 42.77 4.37
2226 6714 5.104693 TCACTAATCGCTAGGATTTTGGGAA 60.105 40.000 10.50 0.00 42.77 3.97
2227 6715 5.765182 CACTAATCGCTAGGATTTTGGGAAT 59.235 40.000 10.50 0.00 42.77 3.01
2228 6716 6.263168 CACTAATCGCTAGGATTTTGGGAATT 59.737 38.462 10.50 0.00 42.77 2.17
2229 6717 7.444183 CACTAATCGCTAGGATTTTGGGAATTA 59.556 37.037 10.50 0.00 42.77 1.40
2230 6718 6.635030 AATCGCTAGGATTTTGGGAATTAC 57.365 37.500 0.00 0.00 42.77 1.89
2231 6719 5.367945 TCGCTAGGATTTTGGGAATTACT 57.632 39.130 0.00 0.00 0.00 2.24
2232 6720 6.488769 TCGCTAGGATTTTGGGAATTACTA 57.511 37.500 0.00 0.00 0.00 1.82
2233 6721 6.891388 TCGCTAGGATTTTGGGAATTACTAA 58.109 36.000 0.00 0.00 0.00 2.24
2234 6722 7.514721 TCGCTAGGATTTTGGGAATTACTAAT 58.485 34.615 0.00 0.00 0.00 1.73
2235 6723 7.660208 TCGCTAGGATTTTGGGAATTACTAATC 59.340 37.037 0.00 0.00 0.00 1.75
2236 6724 7.444183 CGCTAGGATTTTGGGAATTACTAATCA 59.556 37.037 10.67 0.00 0.00 2.57
2237 6725 8.568794 GCTAGGATTTTGGGAATTACTAATCAC 58.431 37.037 10.67 3.86 0.00 3.06
2238 6726 9.853177 CTAGGATTTTGGGAATTACTAATCACT 57.147 33.333 10.67 8.53 0.00 3.41
2260 6748 9.999660 TCACTAAGTATATATATAGAGAGGCCG 57.000 37.037 2.53 0.00 0.00 6.13
2261 6749 9.781633 CACTAAGTATATATATAGAGAGGCCGT 57.218 37.037 2.53 0.00 0.00 5.68
2265 6753 9.869667 AAGTATATATATAGAGAGGCCGTTCAT 57.130 33.333 11.42 6.17 0.00 2.57
2266 6754 9.869667 AGTATATATATAGAGAGGCCGTTCATT 57.130 33.333 11.42 2.05 0.00 2.57
2272 6760 6.867662 ATAGAGAGGCCGTTCATTTTATTG 57.132 37.500 11.42 0.00 0.00 1.90
2273 6761 3.947834 AGAGAGGCCGTTCATTTTATTGG 59.052 43.478 11.42 0.00 0.00 3.16
2274 6762 3.023832 AGAGGCCGTTCATTTTATTGGG 58.976 45.455 0.00 0.00 0.00 4.12
2275 6763 1.480545 AGGCCGTTCATTTTATTGGGC 59.519 47.619 0.00 0.00 41.91 5.36
2276 6764 1.934589 GCCGTTCATTTTATTGGGCC 58.065 50.000 0.00 0.00 33.06 5.80
2277 6765 1.205893 GCCGTTCATTTTATTGGGCCA 59.794 47.619 0.00 0.00 33.06 5.36
2278 6766 2.738321 GCCGTTCATTTTATTGGGCCAG 60.738 50.000 6.23 0.00 33.06 4.85
2279 6767 2.159114 CCGTTCATTTTATTGGGCCAGG 60.159 50.000 6.23 0.00 0.00 4.45
2280 6768 2.738321 CGTTCATTTTATTGGGCCAGGC 60.738 50.000 6.23 1.26 0.00 4.85
2297 6785 4.864334 CCGCCTTAGCCAGCCCAG 62.864 72.222 0.00 0.00 34.57 4.45
2298 6786 4.101448 CGCCTTAGCCAGCCCAGT 62.101 66.667 0.00 0.00 34.57 4.00
2299 6787 2.731571 CGCCTTAGCCAGCCCAGTA 61.732 63.158 0.00 0.00 34.57 2.74
2300 6788 1.839894 GCCTTAGCCAGCCCAGTAT 59.160 57.895 0.00 0.00 0.00 2.12
2301 6789 0.183731 GCCTTAGCCAGCCCAGTATT 59.816 55.000 0.00 0.00 0.00 1.89
2302 6790 1.410224 GCCTTAGCCAGCCCAGTATTT 60.410 52.381 0.00 0.00 0.00 1.40
2303 6791 2.301346 CCTTAGCCAGCCCAGTATTTG 58.699 52.381 0.00 0.00 0.00 2.32
2314 6802 3.214696 CCAGTATTTGGGCCTTCTAGG 57.785 52.381 4.53 0.00 43.75 3.02
2315 6803 2.158608 CCAGTATTTGGGCCTTCTAGGG 60.159 54.545 4.53 0.00 43.75 3.53
2316 6804 2.777692 CAGTATTTGGGCCTTCTAGGGA 59.222 50.000 4.53 0.00 35.37 4.20
2317 6805 2.778270 AGTATTTGGGCCTTCTAGGGAC 59.222 50.000 4.53 0.00 35.37 4.46
2318 6806 0.546598 ATTTGGGCCTTCTAGGGACG 59.453 55.000 4.53 0.00 35.37 4.79
2319 6807 2.193087 TTTGGGCCTTCTAGGGACGC 62.193 60.000 4.53 0.00 35.37 5.19
2320 6808 3.081409 GGGCCTTCTAGGGACGCA 61.081 66.667 0.84 0.00 35.37 5.24
2321 6809 2.444256 GGGCCTTCTAGGGACGCAT 61.444 63.158 0.84 0.00 35.37 4.73
2322 6810 1.069935 GGCCTTCTAGGGACGCATC 59.930 63.158 0.00 0.00 35.37 3.91
2323 6811 1.686325 GGCCTTCTAGGGACGCATCA 61.686 60.000 0.00 0.00 35.37 3.07
2324 6812 0.530870 GCCTTCTAGGGACGCATCAC 60.531 60.000 0.00 0.00 35.37 3.06
2334 6822 3.158813 CGCATCACGCACAAACGC 61.159 61.111 0.00 0.00 42.60 4.84
2335 6823 2.051435 GCATCACGCACAAACGCA 60.051 55.556 0.00 0.00 41.79 5.24
2336 6824 1.442520 GCATCACGCACAAACGCAT 60.443 52.632 0.00 0.00 41.79 4.73
2337 6825 1.398022 GCATCACGCACAAACGCATC 61.398 55.000 0.00 0.00 41.79 3.91
2338 6826 1.121850 CATCACGCACAAACGCATCG 61.122 55.000 0.00 0.00 36.19 3.84
2339 6827 1.288419 ATCACGCACAAACGCATCGA 61.288 50.000 0.00 0.00 36.19 3.59
2340 6828 1.507713 CACGCACAAACGCATCGAG 60.508 57.895 0.00 0.00 36.19 4.04
2341 6829 1.663388 ACGCACAAACGCATCGAGA 60.663 52.632 0.00 0.00 36.19 4.04
2342 6830 1.014044 ACGCACAAACGCATCGAGAT 61.014 50.000 0.00 0.00 36.19 2.75
2343 6831 0.314578 CGCACAAACGCATCGAGATC 60.315 55.000 0.00 0.00 0.00 2.75
2344 6832 0.314578 GCACAAACGCATCGAGATCG 60.315 55.000 0.00 0.00 41.45 3.69
2358 6846 5.751243 TCGAGATCGAGTCATTTATGTCA 57.249 39.130 0.00 0.00 44.22 3.58
2359 6847 5.752712 TCGAGATCGAGTCATTTATGTCAG 58.247 41.667 0.00 0.00 44.22 3.51
2360 6848 4.914504 CGAGATCGAGTCATTTATGTCAGG 59.085 45.833 0.00 0.00 43.02 3.86
2361 6849 5.278022 CGAGATCGAGTCATTTATGTCAGGA 60.278 44.000 0.00 0.00 43.02 3.86
2362 6850 6.471233 AGATCGAGTCATTTATGTCAGGAA 57.529 37.500 0.00 0.00 0.00 3.36
2363 6851 7.060383 AGATCGAGTCATTTATGTCAGGAAT 57.940 36.000 0.00 0.00 0.00 3.01
2364 6852 8.183104 AGATCGAGTCATTTATGTCAGGAATA 57.817 34.615 0.00 0.00 0.00 1.75
2365 6853 8.303156 AGATCGAGTCATTTATGTCAGGAATAG 58.697 37.037 0.00 0.00 0.00 1.73
2366 6854 6.749139 TCGAGTCATTTATGTCAGGAATAGG 58.251 40.000 0.00 0.00 0.00 2.57
2367 6855 6.323996 TCGAGTCATTTATGTCAGGAATAGGT 59.676 38.462 0.00 0.00 0.00 3.08
2368 6856 6.422100 CGAGTCATTTATGTCAGGAATAGGTG 59.578 42.308 0.00 0.00 0.00 4.00
2369 6857 6.595682 AGTCATTTATGTCAGGAATAGGTGG 58.404 40.000 0.00 0.00 0.00 4.61
2370 6858 6.386927 AGTCATTTATGTCAGGAATAGGTGGA 59.613 38.462 0.00 0.00 0.00 4.02
2371 6859 6.708054 GTCATTTATGTCAGGAATAGGTGGAG 59.292 42.308 0.00 0.00 0.00 3.86
2372 6860 6.386927 TCATTTATGTCAGGAATAGGTGGAGT 59.613 38.462 0.00 0.00 0.00 3.85
2373 6861 5.614324 TTATGTCAGGAATAGGTGGAGTG 57.386 43.478 0.00 0.00 0.00 3.51
2374 6862 2.187958 TGTCAGGAATAGGTGGAGTGG 58.812 52.381 0.00 0.00 0.00 4.00
2375 6863 2.188817 GTCAGGAATAGGTGGAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
2376 6864 2.093447 GTCAGGAATAGGTGGAGTGGTG 60.093 54.545 0.00 0.00 0.00 4.17
2377 6865 1.210478 CAGGAATAGGTGGAGTGGTGG 59.790 57.143 0.00 0.00 0.00 4.61
2378 6866 1.080498 AGGAATAGGTGGAGTGGTGGA 59.920 52.381 0.00 0.00 0.00 4.02
2379 6867 1.486726 GGAATAGGTGGAGTGGTGGAG 59.513 57.143 0.00 0.00 0.00 3.86
2380 6868 0.912486 AATAGGTGGAGTGGTGGAGC 59.088 55.000 0.00 0.00 0.00 4.70
2381 6869 0.252696 ATAGGTGGAGTGGTGGAGCA 60.253 55.000 0.00 0.00 0.00 4.26
2382 6870 0.472925 TAGGTGGAGTGGTGGAGCAA 60.473 55.000 0.00 0.00 0.00 3.91
2383 6871 1.136329 AGGTGGAGTGGTGGAGCAAT 61.136 55.000 0.00 0.00 0.00 3.56
2384 6872 0.251341 GGTGGAGTGGTGGAGCAATT 60.251 55.000 0.00 0.00 0.00 2.32
2385 6873 1.168714 GTGGAGTGGTGGAGCAATTC 58.831 55.000 0.00 0.00 0.00 2.17
2386 6874 0.321564 TGGAGTGGTGGAGCAATTCG 60.322 55.000 0.00 0.00 0.00 3.34
2387 6875 0.036388 GGAGTGGTGGAGCAATTCGA 60.036 55.000 0.00 0.00 0.00 3.71
2388 6876 1.363744 GAGTGGTGGAGCAATTCGAG 58.636 55.000 0.00 0.00 0.00 4.04
2389 6877 0.674895 AGTGGTGGAGCAATTCGAGC 60.675 55.000 0.00 0.00 33.24 5.03
2390 6878 1.377202 TGGTGGAGCAATTCGAGCC 60.377 57.895 0.00 0.00 31.81 4.70
2391 6879 1.377202 GGTGGAGCAATTCGAGCCA 60.377 57.895 0.00 0.00 0.00 4.75
2392 6880 1.372087 GGTGGAGCAATTCGAGCCAG 61.372 60.000 0.00 0.00 0.00 4.85
2393 6881 1.078214 TGGAGCAATTCGAGCCAGG 60.078 57.895 0.00 0.00 0.00 4.45
2394 6882 2.476320 GGAGCAATTCGAGCCAGGC 61.476 63.158 1.84 1.84 0.00 4.85
2395 6883 1.746615 GAGCAATTCGAGCCAGGCA 60.747 57.895 15.80 0.00 0.00 4.75
2396 6884 1.303561 AGCAATTCGAGCCAGGCAA 60.304 52.632 15.80 0.00 0.00 4.52
2397 6885 0.895100 AGCAATTCGAGCCAGGCAAA 60.895 50.000 15.80 5.23 0.00 3.68
2398 6886 0.733909 GCAATTCGAGCCAGGCAAAC 60.734 55.000 15.80 3.62 0.00 2.93
2399 6887 0.597568 CAATTCGAGCCAGGCAAACA 59.402 50.000 15.80 0.00 0.00 2.83
2400 6888 0.883833 AATTCGAGCCAGGCAAACAG 59.116 50.000 15.80 0.00 0.00 3.16
2401 6889 1.589716 ATTCGAGCCAGGCAAACAGC 61.590 55.000 15.80 0.00 44.65 4.40
2410 6898 2.127758 GCAAACAGCGACCGAACG 60.128 61.111 0.00 0.00 0.00 3.95
2411 6899 2.591311 GCAAACAGCGACCGAACGA 61.591 57.895 5.50 0.00 35.09 3.85
2412 6900 1.200839 CAAACAGCGACCGAACGAC 59.799 57.895 5.50 0.00 35.09 4.34
2413 6901 2.297912 AAACAGCGACCGAACGACG 61.298 57.895 5.50 0.00 42.18 5.12
2445 6933 3.276886 GTCGAGCATTCGTCGTCG 58.723 61.111 0.00 0.00 46.72 5.12
2446 6934 2.099638 TCGAGCATTCGTCGTCGG 59.900 61.111 1.55 0.00 46.72 4.79
2447 6935 2.949678 CGAGCATTCGTCGTCGGG 60.950 66.667 1.55 0.00 41.84 5.14
2448 6936 3.255379 GAGCATTCGTCGTCGGGC 61.255 66.667 1.55 4.39 37.69 6.13
2449 6937 3.982372 GAGCATTCGTCGTCGGGCA 62.982 63.158 13.80 0.00 37.69 5.36
2450 6938 3.115892 GCATTCGTCGTCGGGCAA 61.116 61.111 1.55 0.00 37.69 4.52
2451 6939 3.081133 CATTCGTCGTCGGGCAAG 58.919 61.111 1.55 0.00 37.69 4.01
2452 6940 2.813908 ATTCGTCGTCGGGCAAGC 60.814 61.111 1.55 0.00 37.69 4.01
2453 6941 3.583276 ATTCGTCGTCGGGCAAGCA 62.583 57.895 1.55 0.00 37.69 3.91
2454 6942 2.852495 ATTCGTCGTCGGGCAAGCAT 62.852 55.000 1.55 0.00 37.69 3.79
2455 6943 3.853330 CGTCGTCGGGCAAGCATG 61.853 66.667 0.00 0.00 0.00 4.06
2456 6944 2.434185 GTCGTCGGGCAAGCATGA 60.434 61.111 0.00 0.00 0.00 3.07
2457 6945 2.125552 TCGTCGGGCAAGCATGAG 60.126 61.111 0.00 0.00 0.00 2.90
2458 6946 3.197790 CGTCGGGCAAGCATGAGG 61.198 66.667 0.00 0.00 0.00 3.86
2459 6947 3.512516 GTCGGGCAAGCATGAGGC 61.513 66.667 0.00 0.00 45.30 4.70
2481 6969 4.007644 CTGGGCGCTGGTGAGACA 62.008 66.667 7.64 0.00 0.00 3.41
2482 6970 3.947132 CTGGGCGCTGGTGAGACAG 62.947 68.421 7.64 0.00 41.41 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.661187 CAATGTGCACGTGGTTCTGC 60.661 55.000 18.88 1.49 0.00 4.26
47 48 2.268920 GATCGTGAGGCCCAGCAA 59.731 61.111 0.00 0.00 0.00 3.91
48 49 4.147449 CGATCGTGAGGCCCAGCA 62.147 66.667 7.03 0.00 0.00 4.41
133 134 2.505498 CGCCGCGACAGTGTATCAC 61.505 63.158 8.23 0.00 34.10 3.06
140 141 4.373116 ATGGAACGCCGCGACAGT 62.373 61.111 21.79 0.52 36.79 3.55
178 179 2.811317 GAAGTCCTCGGCGTGCAG 60.811 66.667 6.85 0.00 0.00 4.41
179 180 4.373116 GGAAGTCCTCGGCGTGCA 62.373 66.667 6.85 0.00 0.00 4.57
185 186 1.139095 GTACAGCGGAAGTCCTCGG 59.861 63.158 0.00 0.00 0.00 4.63
186 187 1.226323 CGTACAGCGGAAGTCCTCG 60.226 63.158 0.00 0.00 36.85 4.63
187 188 1.516603 GCGTACAGCGGAAGTCCTC 60.517 63.158 0.00 0.00 41.69 3.71
188 189 2.572284 GCGTACAGCGGAAGTCCT 59.428 61.111 0.00 0.00 41.69 3.85
236 237 0.373716 CGTGGAAGCTATCGGTTTGC 59.626 55.000 0.00 0.00 0.00 3.68
265 266 3.314553 GTCGTGAGAATTCGGTTTGAGA 58.685 45.455 0.00 0.00 45.01 3.27
286 309 3.726517 CCAGTGCAAAGACGGCGG 61.727 66.667 13.24 0.00 0.00 6.13
288 311 0.674895 AGATCCAGTGCAAAGACGGC 60.675 55.000 0.00 0.00 0.00 5.68
306 329 5.240403 TGATCTAGAGAATGGATCGTGTCAG 59.760 44.000 0.00 0.00 46.22 3.51
320 343 3.139850 GGTCGTCGGATTGATCTAGAGA 58.860 50.000 0.00 0.00 0.00 3.10
323 346 3.142951 AGAGGTCGTCGGATTGATCTAG 58.857 50.000 0.00 0.00 0.00 2.43
350 2642 3.923017 ACAAGTGGTATCAAAGCAAGC 57.077 42.857 0.00 0.00 37.33 4.01
373 2666 6.068010 TCAATGGTATGCCTCGGATTTATTT 58.932 36.000 0.16 0.00 35.27 1.40
393 2686 4.711399 TGCTTGATTCTCGGATGATCAAT 58.289 39.130 0.00 0.00 31.82 2.57
407 2700 2.153645 TGCTCGTGTGATTGCTTGATT 58.846 42.857 0.00 0.00 0.00 2.57
409 2702 1.465777 CATGCTCGTGTGATTGCTTGA 59.534 47.619 0.00 0.00 34.05 3.02
428 2721 5.105635 ACCTCGTTAACAAATCTCGGTATCA 60.106 40.000 6.39 0.00 0.00 2.15
431 2724 4.789012 ACCTCGTTAACAAATCTCGGTA 57.211 40.909 6.39 0.00 0.00 4.02
456 2749 1.182667 CGGGGATGTAGCCATATCGA 58.817 55.000 0.00 0.00 0.00 3.59
492 2785 1.983224 CGGTGTCATGGGAAGGAGT 59.017 57.895 0.00 0.00 0.00 3.85
498 2791 0.908910 ATTGTAGCGGTGTCATGGGA 59.091 50.000 0.00 0.00 0.00 4.37
527 2820 3.374402 CCGGTGTCCAGAGCGACT 61.374 66.667 0.00 0.00 39.17 4.18
533 2826 2.347114 CATGTGCCGGTGTCCAGA 59.653 61.111 1.90 0.00 0.00 3.86
587 2881 3.447586 AGACACACGATGTAACCTATGCT 59.552 43.478 0.00 0.00 43.56 3.79
651 2945 4.974645 AGAATGTGGAGTTGTGTCCTAA 57.025 40.909 0.00 0.00 37.52 2.69
660 2954 8.635765 ATTGTGTTTACATAGAATGTGGAGTT 57.364 30.769 2.83 0.00 44.60 3.01
692 2986 5.266709 AGGTAGGTTACAGTTGGACTAGA 57.733 43.478 0.00 0.00 0.00 2.43
755 3049 5.454232 GCTCGATCAAAACACGAAAGAAAAA 59.546 36.000 0.00 0.00 35.70 1.94
756 3050 4.967575 GCTCGATCAAAACACGAAAGAAAA 59.032 37.500 0.00 0.00 35.70 2.29
757 3051 4.034626 TGCTCGATCAAAACACGAAAGAAA 59.965 37.500 0.00 0.00 35.70 2.52
758 3052 3.558006 TGCTCGATCAAAACACGAAAGAA 59.442 39.130 0.00 0.00 35.70 2.52
759 3053 3.127589 TGCTCGATCAAAACACGAAAGA 58.872 40.909 0.00 0.00 35.70 2.52
760 3054 3.519908 TGCTCGATCAAAACACGAAAG 57.480 42.857 0.00 0.00 35.70 2.62
761 3055 4.463209 GAATGCTCGATCAAAACACGAAA 58.537 39.130 0.00 0.00 35.70 3.46
762 3056 3.120338 GGAATGCTCGATCAAAACACGAA 60.120 43.478 0.00 0.00 35.70 3.85
763 3057 2.415168 GGAATGCTCGATCAAAACACGA 59.585 45.455 0.00 0.00 34.90 4.35
764 3058 2.159430 TGGAATGCTCGATCAAAACACG 59.841 45.455 0.00 0.00 0.00 4.49
765 3059 3.058293 TGTGGAATGCTCGATCAAAACAC 60.058 43.478 11.29 11.29 0.00 3.32
766 3060 3.145286 TGTGGAATGCTCGATCAAAACA 58.855 40.909 0.00 0.00 0.00 2.83
767 3061 3.829886 TGTGGAATGCTCGATCAAAAC 57.170 42.857 0.00 0.00 0.00 2.43
768 3062 4.701651 AGATTGTGGAATGCTCGATCAAAA 59.298 37.500 6.78 0.00 0.00 2.44
769 3063 4.264253 AGATTGTGGAATGCTCGATCAAA 58.736 39.130 6.78 0.00 0.00 2.69
770 3064 3.873361 GAGATTGTGGAATGCTCGATCAA 59.127 43.478 6.78 0.00 0.00 2.57
771 3065 3.461061 GAGATTGTGGAATGCTCGATCA 58.539 45.455 6.78 0.00 0.00 2.92
775 3069 0.933097 CCGAGATTGTGGAATGCTCG 59.067 55.000 0.00 0.00 45.67 5.03
776 3070 1.936547 GTCCGAGATTGTGGAATGCTC 59.063 52.381 0.00 0.00 35.67 4.26
777 3071 1.740380 CGTCCGAGATTGTGGAATGCT 60.740 52.381 0.00 0.00 35.67 3.79
778 3072 0.652592 CGTCCGAGATTGTGGAATGC 59.347 55.000 0.00 0.00 35.67 3.56
779 3073 0.652592 GCGTCCGAGATTGTGGAATG 59.347 55.000 0.00 0.00 35.67 2.67
780 3074 0.462047 GGCGTCCGAGATTGTGGAAT 60.462 55.000 0.00 0.00 35.67 3.01
781 3075 1.079405 GGCGTCCGAGATTGTGGAA 60.079 57.895 0.00 0.00 35.67 3.53
782 3076 1.613317 ATGGCGTCCGAGATTGTGGA 61.613 55.000 0.00 0.00 0.00 4.02
783 3077 0.104120 TATGGCGTCCGAGATTGTGG 59.896 55.000 0.00 0.00 0.00 4.17
784 3078 2.061773 GATATGGCGTCCGAGATTGTG 58.938 52.381 0.00 0.00 0.00 3.33
785 3079 1.000955 GGATATGGCGTCCGAGATTGT 59.999 52.381 0.00 0.00 0.00 2.71
786 3080 1.673033 GGGATATGGCGTCCGAGATTG 60.673 57.143 0.00 0.00 36.58 2.67
787 3081 0.608640 GGGATATGGCGTCCGAGATT 59.391 55.000 0.00 0.00 36.58 2.40
788 3082 1.258445 GGGGATATGGCGTCCGAGAT 61.258 60.000 0.00 0.00 36.58 2.75
789 3083 1.906824 GGGGATATGGCGTCCGAGA 60.907 63.158 0.00 0.00 36.58 4.04
790 3084 1.544825 ATGGGGATATGGCGTCCGAG 61.545 60.000 0.00 0.00 36.58 4.63
791 3085 1.125093 AATGGGGATATGGCGTCCGA 61.125 55.000 0.00 0.00 36.58 4.55
792 3086 0.673644 GAATGGGGATATGGCGTCCG 60.674 60.000 0.00 0.00 36.58 4.79
793 3087 0.322546 GGAATGGGGATATGGCGTCC 60.323 60.000 0.00 0.00 34.92 4.79
794 3088 0.322546 GGGAATGGGGATATGGCGTC 60.323 60.000 0.00 0.00 0.00 5.19
795 3089 1.767692 GGGAATGGGGATATGGCGT 59.232 57.895 0.00 0.00 0.00 5.68
796 3090 1.000896 GGGGAATGGGGATATGGCG 60.001 63.158 0.00 0.00 0.00 5.69
797 3091 0.251787 GTGGGGAATGGGGATATGGC 60.252 60.000 0.00 0.00 0.00 4.40
798 3092 1.460218 AGTGGGGAATGGGGATATGG 58.540 55.000 0.00 0.00 0.00 2.74
799 3093 3.260205 ACTAGTGGGGAATGGGGATATG 58.740 50.000 0.00 0.00 0.00 1.78
800 3094 3.674358 ACTAGTGGGGAATGGGGATAT 57.326 47.619 0.00 0.00 0.00 1.63
801 3095 3.210305 TGTACTAGTGGGGAATGGGGATA 59.790 47.826 5.39 0.00 0.00 2.59
802 3096 2.021441 TGTACTAGTGGGGAATGGGGAT 60.021 50.000 5.39 0.00 0.00 3.85
803 3097 1.366787 TGTACTAGTGGGGAATGGGGA 59.633 52.381 5.39 0.00 0.00 4.81
804 3098 1.887797 TGTACTAGTGGGGAATGGGG 58.112 55.000 5.39 0.00 0.00 4.96
805 3099 4.232091 AGTATGTACTAGTGGGGAATGGG 58.768 47.826 5.39 0.00 34.13 4.00
806 3100 4.283722 GGAGTATGTACTAGTGGGGAATGG 59.716 50.000 5.39 0.00 36.50 3.16
807 3101 4.283722 GGGAGTATGTACTAGTGGGGAATG 59.716 50.000 5.39 0.00 36.50 2.67
808 3102 4.172241 AGGGAGTATGTACTAGTGGGGAAT 59.828 45.833 5.39 0.00 36.50 3.01
809 3103 3.534747 AGGGAGTATGTACTAGTGGGGAA 59.465 47.826 5.39 0.00 36.50 3.97
810 3104 3.136896 AGGGAGTATGTACTAGTGGGGA 58.863 50.000 5.39 0.00 36.50 4.81
811 3105 3.614568 AGGGAGTATGTACTAGTGGGG 57.385 52.381 5.39 0.00 36.50 4.96
812 3106 4.106019 AGGTAGGGAGTATGTACTAGTGGG 59.894 50.000 5.39 0.00 36.50 4.61
813 3107 5.073417 AGAGGTAGGGAGTATGTACTAGTGG 59.927 48.000 5.39 0.00 36.50 4.00
814 3108 6.190346 AGAGGTAGGGAGTATGTACTAGTG 57.810 45.833 5.39 0.00 36.50 2.74
815 3109 5.310331 GGAGAGGTAGGGAGTATGTACTAGT 59.690 48.000 0.00 0.00 36.50 2.57
816 3110 5.310068 TGGAGAGGTAGGGAGTATGTACTAG 59.690 48.000 0.00 0.00 36.50 2.57
817 3111 5.072872 GTGGAGAGGTAGGGAGTATGTACTA 59.927 48.000 0.00 0.00 36.50 1.82
818 3112 4.052922 TGGAGAGGTAGGGAGTATGTACT 58.947 47.826 0.00 0.00 39.71 2.73
819 3113 4.143543 GTGGAGAGGTAGGGAGTATGTAC 58.856 52.174 0.00 0.00 0.00 2.90
820 3114 3.789840 TGTGGAGAGGTAGGGAGTATGTA 59.210 47.826 0.00 0.00 0.00 2.29
821 3115 2.585900 TGTGGAGAGGTAGGGAGTATGT 59.414 50.000 0.00 0.00 0.00 2.29
822 3116 3.226777 CTGTGGAGAGGTAGGGAGTATG 58.773 54.545 0.00 0.00 0.00 2.39
823 3117 2.860041 ACTGTGGAGAGGTAGGGAGTAT 59.140 50.000 0.00 0.00 0.00 2.12
824 3118 2.241685 GACTGTGGAGAGGTAGGGAGTA 59.758 54.545 0.00 0.00 0.00 2.59
825 3119 1.006162 GACTGTGGAGAGGTAGGGAGT 59.994 57.143 0.00 0.00 0.00 3.85
826 3120 1.006043 TGACTGTGGAGAGGTAGGGAG 59.994 57.143 0.00 0.00 0.00 4.30
827 3121 1.006043 CTGACTGTGGAGAGGTAGGGA 59.994 57.143 0.00 0.00 0.00 4.20
828 3122 1.479709 CTGACTGTGGAGAGGTAGGG 58.520 60.000 0.00 0.00 0.00 3.53
829 3123 0.820871 GCTGACTGTGGAGAGGTAGG 59.179 60.000 0.00 0.00 0.00 3.18
830 3124 0.820871 GGCTGACTGTGGAGAGGTAG 59.179 60.000 0.00 0.00 0.00 3.18
850 3144 1.496857 TGGTGGTGAATGGGAAAGACA 59.503 47.619 0.00 0.00 0.00 3.41
854 3148 1.203001 GGTCTGGTGGTGAATGGGAAA 60.203 52.381 0.00 0.00 0.00 3.13
885 3184 2.719354 GGTTTTCGCCTGCGTTGT 59.281 55.556 11.68 0.00 40.74 3.32
903 3202 0.734889 CATGGTTGGCTTGGATCGAC 59.265 55.000 0.00 0.00 0.00 4.20
907 3206 0.685458 GCCTCATGGTTGGCTTGGAT 60.685 55.000 14.92 0.00 45.26 3.41
937 3236 2.015456 TGAGCAGGAGGAAGAAGACA 57.985 50.000 0.00 0.00 0.00 3.41
978 3277 5.244785 TGTGTCTTCTAATGTAGTAGCGG 57.755 43.478 0.00 0.00 0.00 5.52
979 3278 5.174035 GCATGTGTCTTCTAATGTAGTAGCG 59.826 44.000 0.00 0.00 0.00 4.26
980 3279 6.042777 TGCATGTGTCTTCTAATGTAGTAGC 58.957 40.000 0.00 0.00 0.00 3.58
1389 3689 2.182030 CTGAACTCGGCGTCCTCC 59.818 66.667 6.85 0.00 0.00 4.30
1473 3773 1.795525 CGGACGCACTATCAGTCACTG 60.796 57.143 0.00 0.00 36.68 3.66
1518 3818 4.440112 CGGAAAACCTTATTTGATCCTGCC 60.440 45.833 0.00 0.00 0.00 4.85
1534 3834 4.493547 TGCAATGGAAATCATCGGAAAAC 58.506 39.130 0.00 0.00 34.44 2.43
1561 3861 4.339814 AGCACGGAAAGATTAAAAACCACA 59.660 37.500 0.00 0.00 0.00 4.17
1578 3878 1.109296 CAAACGAAACGAAAGCACGG 58.891 50.000 0.00 0.00 37.61 4.94
1593 3893 3.545873 CACACAATCAAACACGTCCAAAC 59.454 43.478 0.00 0.00 0.00 2.93
1594 3894 3.428180 CCACACAATCAAACACGTCCAAA 60.428 43.478 0.00 0.00 0.00 3.28
1595 3895 2.098280 CCACACAATCAAACACGTCCAA 59.902 45.455 0.00 0.00 0.00 3.53
1636 3936 0.521867 CGATCAAACCACTGCATGCG 60.522 55.000 14.09 10.50 0.00 4.73
1892 4197 1.141657 CCATAGCCCTCTTGCAGCTAA 59.858 52.381 8.48 0.00 42.07 3.09
1925 4230 3.746045 TCCGCACTCTGTTTTCTTAGT 57.254 42.857 0.00 0.00 0.00 2.24
1957 6442 4.994756 CCTTTTGGGCCCGGCACT 62.995 66.667 19.37 0.00 35.46 4.40
2047 6532 2.070650 GTGCCACCCCCTACCCTAG 61.071 68.421 0.00 0.00 0.00 3.02
2098 6586 3.940852 TGTTGTCATGTGTGCATAGGATC 59.059 43.478 0.00 0.00 33.30 3.36
2099 6587 3.954200 TGTTGTCATGTGTGCATAGGAT 58.046 40.909 0.00 0.00 33.30 3.24
2104 6592 2.610976 GCCAATGTTGTCATGTGTGCAT 60.611 45.455 0.00 0.00 34.19 3.96
2111 6599 0.452987 CCTCCGCCAATGTTGTCATG 59.547 55.000 0.00 0.00 34.19 3.07
2113 6601 0.605319 GTCCTCCGCCAATGTTGTCA 60.605 55.000 0.00 0.00 0.00 3.58
2118 6606 3.728373 GGGGTCCTCCGCCAATGT 61.728 66.667 0.00 0.00 45.40 2.71
2123 6611 3.866582 CATCAGGGGTCCTCCGCC 61.867 72.222 0.00 0.00 46.19 6.13
2124 6612 3.866582 CCATCAGGGGTCCTCCGC 61.867 72.222 0.00 0.00 45.51 5.54
2134 6622 1.679977 CCACACCTTGCCCATCAGG 60.680 63.158 0.00 0.00 39.47 3.86
2135 6623 2.345760 GCCACACCTTGCCCATCAG 61.346 63.158 0.00 0.00 0.00 2.90
2136 6624 2.283101 GCCACACCTTGCCCATCA 60.283 61.111 0.00 0.00 0.00 3.07
2137 6625 2.283101 TGCCACACCTTGCCCATC 60.283 61.111 0.00 0.00 0.00 3.51
2138 6626 2.283388 CTGCCACACCTTGCCCAT 60.283 61.111 0.00 0.00 0.00 4.00
2139 6627 3.790416 GACTGCCACACCTTGCCCA 62.790 63.158 0.00 0.00 0.00 5.36
2140 6628 2.985847 GACTGCCACACCTTGCCC 60.986 66.667 0.00 0.00 0.00 5.36
2141 6629 3.357079 CGACTGCCACACCTTGCC 61.357 66.667 0.00 0.00 0.00 4.52
2142 6630 4.030452 GCGACTGCCACACCTTGC 62.030 66.667 0.00 0.00 33.98 4.01
2152 6640 1.237285 AATCAAGGTGTGGCGACTGC 61.237 55.000 0.00 0.00 41.71 4.40
2153 6641 1.069022 CAAATCAAGGTGTGGCGACTG 60.069 52.381 0.00 0.00 0.00 3.51
2154 6642 1.238439 CAAATCAAGGTGTGGCGACT 58.762 50.000 0.00 0.00 0.00 4.18
2155 6643 0.240945 CCAAATCAAGGTGTGGCGAC 59.759 55.000 0.00 0.00 0.00 5.19
2156 6644 0.179004 ACCAAATCAAGGTGTGGCGA 60.179 50.000 0.00 0.00 38.13 5.54
2157 6645 0.240945 GACCAAATCAAGGTGTGGCG 59.759 55.000 0.00 0.00 40.09 5.69
2158 6646 0.603065 GGACCAAATCAAGGTGTGGC 59.397 55.000 0.00 0.00 40.09 5.01
2159 6647 1.993956 TGGACCAAATCAAGGTGTGG 58.006 50.000 0.00 0.00 40.09 4.17
2160 6648 4.605640 ATTTGGACCAAATCAAGGTGTG 57.394 40.909 24.12 0.00 39.50 3.82
2161 6649 5.628797 AAATTTGGACCAAATCAAGGTGT 57.371 34.783 28.49 11.71 42.32 4.16
2162 6650 6.940831 AAAAATTTGGACCAAATCAAGGTG 57.059 33.333 28.49 0.00 42.32 4.00
2185 6673 9.481800 CGATTAGTGAACGAAGCGTATATATAA 57.518 33.333 5.90 0.00 39.99 0.98
2186 6674 7.637519 GCGATTAGTGAACGAAGCGTATATATA 59.362 37.037 13.81 0.00 41.20 0.86
2187 6675 6.468319 GCGATTAGTGAACGAAGCGTATATAT 59.532 38.462 13.81 0.00 41.20 0.86
2188 6676 5.791974 GCGATTAGTGAACGAAGCGTATATA 59.208 40.000 13.81 0.00 41.20 0.86
2189 6677 4.615961 GCGATTAGTGAACGAAGCGTATAT 59.384 41.667 13.81 0.00 41.20 0.86
2190 6678 3.970610 GCGATTAGTGAACGAAGCGTATA 59.029 43.478 13.81 0.00 41.20 1.47
2191 6679 2.787680 GCGATTAGTGAACGAAGCGTAT 59.212 45.455 13.81 0.00 41.20 3.06
2192 6680 2.159476 AGCGATTAGTGAACGAAGCGTA 60.159 45.455 13.81 0.00 41.20 4.42
2193 6681 0.989890 GCGATTAGTGAACGAAGCGT 59.010 50.000 13.81 0.00 41.20 5.07
2194 6682 1.269166 AGCGATTAGTGAACGAAGCG 58.731 50.000 9.16 9.16 41.83 4.68
2195 6683 2.789893 CCTAGCGATTAGTGAACGAAGC 59.210 50.000 0.00 0.00 0.00 3.86
2196 6684 4.288670 TCCTAGCGATTAGTGAACGAAG 57.711 45.455 0.00 0.00 0.00 3.79
2197 6685 4.913335 ATCCTAGCGATTAGTGAACGAA 57.087 40.909 0.00 0.00 0.00 3.85
2198 6686 4.913335 AATCCTAGCGATTAGTGAACGA 57.087 40.909 5.06 0.00 39.53 3.85
2199 6687 5.276868 CCAAAATCCTAGCGATTAGTGAACG 60.277 44.000 6.82 0.00 40.47 3.95
2200 6688 5.007724 CCCAAAATCCTAGCGATTAGTGAAC 59.992 44.000 6.82 0.00 40.47 3.18
2201 6689 5.104693 TCCCAAAATCCTAGCGATTAGTGAA 60.105 40.000 6.82 1.05 40.47 3.18
2202 6690 4.407621 TCCCAAAATCCTAGCGATTAGTGA 59.592 41.667 6.82 0.10 40.47 3.41
2203 6691 4.703897 TCCCAAAATCCTAGCGATTAGTG 58.296 43.478 6.82 7.98 40.47 2.74
2204 6692 5.367945 TTCCCAAAATCCTAGCGATTAGT 57.632 39.130 6.82 0.00 40.47 2.24
2205 6693 6.884280 AATTCCCAAAATCCTAGCGATTAG 57.116 37.500 6.82 4.24 40.47 1.73
2206 6694 7.514721 AGTAATTCCCAAAATCCTAGCGATTA 58.485 34.615 6.82 0.00 40.47 1.75
2207 6695 6.365520 AGTAATTCCCAAAATCCTAGCGATT 58.634 36.000 0.00 1.81 43.34 3.34
2208 6696 5.941788 AGTAATTCCCAAAATCCTAGCGAT 58.058 37.500 0.00 0.00 0.00 4.58
2209 6697 5.367945 AGTAATTCCCAAAATCCTAGCGA 57.632 39.130 0.00 0.00 0.00 4.93
2210 6698 7.444183 TGATTAGTAATTCCCAAAATCCTAGCG 59.556 37.037 0.00 0.00 0.00 4.26
2211 6699 8.568794 GTGATTAGTAATTCCCAAAATCCTAGC 58.431 37.037 0.00 0.00 0.00 3.42
2212 6700 9.853177 AGTGATTAGTAATTCCCAAAATCCTAG 57.147 33.333 0.00 0.00 0.00 3.02
2234 6722 9.999660 CGGCCTCTCTATATATATACTTAGTGA 57.000 37.037 0.00 0.92 0.00 3.41
2235 6723 9.781633 ACGGCCTCTCTATATATATACTTAGTG 57.218 37.037 0.00 0.00 0.00 2.74
2239 6727 9.869667 ATGAACGGCCTCTCTATATATATACTT 57.130 33.333 0.00 0.00 0.00 2.24
2240 6728 9.869667 AATGAACGGCCTCTCTATATATATACT 57.130 33.333 0.00 0.00 0.00 2.12
2246 6734 9.653287 CAATAAAATGAACGGCCTCTCTATATA 57.347 33.333 0.00 0.00 0.00 0.86
2247 6735 7.607991 CCAATAAAATGAACGGCCTCTCTATAT 59.392 37.037 0.00 0.00 0.00 0.86
2248 6736 6.934645 CCAATAAAATGAACGGCCTCTCTATA 59.065 38.462 0.00 0.00 0.00 1.31
2249 6737 5.765182 CCAATAAAATGAACGGCCTCTCTAT 59.235 40.000 0.00 0.00 0.00 1.98
2250 6738 5.123227 CCAATAAAATGAACGGCCTCTCTA 58.877 41.667 0.00 0.00 0.00 2.43
2251 6739 3.947834 CCAATAAAATGAACGGCCTCTCT 59.052 43.478 0.00 0.00 0.00 3.10
2252 6740 3.066760 CCCAATAAAATGAACGGCCTCTC 59.933 47.826 0.00 0.00 0.00 3.20
2253 6741 3.023832 CCCAATAAAATGAACGGCCTCT 58.976 45.455 0.00 0.00 0.00 3.69
2254 6742 2.481276 GCCCAATAAAATGAACGGCCTC 60.481 50.000 0.00 0.00 0.00 4.70
2255 6743 1.480545 GCCCAATAAAATGAACGGCCT 59.519 47.619 0.00 0.00 0.00 5.19
2256 6744 1.934589 GCCCAATAAAATGAACGGCC 58.065 50.000 0.00 0.00 0.00 6.13
2257 6745 1.205893 TGGCCCAATAAAATGAACGGC 59.794 47.619 0.00 0.00 0.00 5.68
2258 6746 2.159114 CCTGGCCCAATAAAATGAACGG 60.159 50.000 0.00 0.00 0.00 4.44
2259 6747 2.738321 GCCTGGCCCAATAAAATGAACG 60.738 50.000 7.66 0.00 0.00 3.95
2260 6748 2.419990 GGCCTGGCCCAATAAAATGAAC 60.420 50.000 27.77 0.00 44.06 3.18
2261 6749 1.836802 GGCCTGGCCCAATAAAATGAA 59.163 47.619 27.77 0.00 44.06 2.57
2262 6750 1.494960 GGCCTGGCCCAATAAAATGA 58.505 50.000 27.77 0.00 44.06 2.57
2283 6771 2.301346 CAAATACTGGGCTGGCTAAGG 58.699 52.381 0.00 0.00 0.00 2.69
2284 6772 2.301346 CCAAATACTGGGCTGGCTAAG 58.699 52.381 0.00 2.12 42.17 2.18
2285 6773 2.435372 CCAAATACTGGGCTGGCTAA 57.565 50.000 0.00 0.00 42.17 3.09
2294 6782 2.158608 CCCTAGAAGGCCCAAATACTGG 60.159 54.545 0.00 0.00 37.47 4.00
2295 6783 2.777692 TCCCTAGAAGGCCCAAATACTG 59.222 50.000 0.00 0.00 32.73 2.74
2296 6784 2.778270 GTCCCTAGAAGGCCCAAATACT 59.222 50.000 0.00 0.00 32.73 2.12
2297 6785 2.484947 CGTCCCTAGAAGGCCCAAATAC 60.485 54.545 0.00 0.00 32.73 1.89
2298 6786 1.766496 CGTCCCTAGAAGGCCCAAATA 59.234 52.381 0.00 0.00 32.73 1.40
2299 6787 0.546598 CGTCCCTAGAAGGCCCAAAT 59.453 55.000 0.00 0.00 32.73 2.32
2300 6788 1.988015 CGTCCCTAGAAGGCCCAAA 59.012 57.895 0.00 0.00 32.73 3.28
2301 6789 2.666098 GCGTCCCTAGAAGGCCCAA 61.666 63.158 0.00 0.00 32.73 4.12
2302 6790 3.081409 GCGTCCCTAGAAGGCCCA 61.081 66.667 0.00 0.00 32.73 5.36
2303 6791 2.384653 GATGCGTCCCTAGAAGGCCC 62.385 65.000 0.00 0.00 32.73 5.80
2304 6792 1.069935 GATGCGTCCCTAGAAGGCC 59.930 63.158 0.00 0.00 32.73 5.19
2305 6793 0.530870 GTGATGCGTCCCTAGAAGGC 60.531 60.000 2.83 0.00 32.73 4.35
2306 6794 0.249073 CGTGATGCGTCCCTAGAAGG 60.249 60.000 2.83 0.00 35.54 3.46
2307 6795 0.872021 GCGTGATGCGTCCCTAGAAG 60.872 60.000 2.83 0.00 43.66 2.85
2308 6796 1.141019 GCGTGATGCGTCCCTAGAA 59.859 57.895 2.83 0.00 43.66 2.10
2309 6797 2.805546 GCGTGATGCGTCCCTAGA 59.194 61.111 2.83 0.00 43.66 2.43
2318 6806 1.398022 GATGCGTTTGTGCGTGATGC 61.398 55.000 0.00 0.00 46.70 3.91
2319 6807 1.121850 CGATGCGTTTGTGCGTGATG 61.122 55.000 0.00 0.00 37.81 3.07
2320 6808 1.132436 CGATGCGTTTGTGCGTGAT 59.868 52.632 0.00 0.00 37.81 3.06
2321 6809 1.885814 CTCGATGCGTTTGTGCGTGA 61.886 55.000 0.00 0.00 37.81 4.35
2322 6810 1.507713 CTCGATGCGTTTGTGCGTG 60.508 57.895 0.00 0.00 37.81 5.34
2323 6811 1.014044 ATCTCGATGCGTTTGTGCGT 61.014 50.000 0.00 0.00 37.81 5.24
2324 6812 0.314578 GATCTCGATGCGTTTGTGCG 60.315 55.000 0.00 0.00 37.81 5.34
2325 6813 0.314578 CGATCTCGATGCGTTTGTGC 60.315 55.000 0.00 0.00 43.02 4.57
2326 6814 1.268265 TCGATCTCGATGCGTTTGTG 58.732 50.000 0.00 0.00 44.22 3.33
2327 6815 3.713936 TCGATCTCGATGCGTTTGT 57.286 47.368 0.00 0.00 44.22 2.83
2337 6825 4.914504 CCTGACATAAATGACTCGATCTCG 59.085 45.833 0.00 0.00 41.45 4.04
2338 6826 6.078202 TCCTGACATAAATGACTCGATCTC 57.922 41.667 0.00 0.00 0.00 2.75
2339 6827 6.471233 TTCCTGACATAAATGACTCGATCT 57.529 37.500 0.00 0.00 0.00 2.75
2340 6828 7.543868 CCTATTCCTGACATAAATGACTCGATC 59.456 40.741 0.00 0.00 0.00 3.69
2341 6829 7.015682 ACCTATTCCTGACATAAATGACTCGAT 59.984 37.037 0.00 0.00 0.00 3.59
2342 6830 6.323996 ACCTATTCCTGACATAAATGACTCGA 59.676 38.462 0.00 0.00 0.00 4.04
2343 6831 6.422100 CACCTATTCCTGACATAAATGACTCG 59.578 42.308 0.00 0.00 0.00 4.18
2344 6832 6.708054 CCACCTATTCCTGACATAAATGACTC 59.292 42.308 0.00 0.00 0.00 3.36
2345 6833 6.386927 TCCACCTATTCCTGACATAAATGACT 59.613 38.462 0.00 0.00 0.00 3.41
2346 6834 6.591935 TCCACCTATTCCTGACATAAATGAC 58.408 40.000 0.00 0.00 0.00 3.06
2347 6835 6.386927 ACTCCACCTATTCCTGACATAAATGA 59.613 38.462 0.00 0.00 0.00 2.57
2348 6836 6.484643 CACTCCACCTATTCCTGACATAAATG 59.515 42.308 0.00 0.00 0.00 2.32
2349 6837 6.409695 CCACTCCACCTATTCCTGACATAAAT 60.410 42.308 0.00 0.00 0.00 1.40
2350 6838 5.104527 CCACTCCACCTATTCCTGACATAAA 60.105 44.000 0.00 0.00 0.00 1.40
2351 6839 4.408921 CCACTCCACCTATTCCTGACATAA 59.591 45.833 0.00 0.00 0.00 1.90
2352 6840 3.967326 CCACTCCACCTATTCCTGACATA 59.033 47.826 0.00 0.00 0.00 2.29
2353 6841 2.774234 CCACTCCACCTATTCCTGACAT 59.226 50.000 0.00 0.00 0.00 3.06
2354 6842 2.187958 CCACTCCACCTATTCCTGACA 58.812 52.381 0.00 0.00 0.00 3.58
2355 6843 2.093447 CACCACTCCACCTATTCCTGAC 60.093 54.545 0.00 0.00 0.00 3.51
2356 6844 2.187958 CACCACTCCACCTATTCCTGA 58.812 52.381 0.00 0.00 0.00 3.86
2357 6845 1.210478 CCACCACTCCACCTATTCCTG 59.790 57.143 0.00 0.00 0.00 3.86
2358 6846 1.080498 TCCACCACTCCACCTATTCCT 59.920 52.381 0.00 0.00 0.00 3.36
2359 6847 1.486726 CTCCACCACTCCACCTATTCC 59.513 57.143 0.00 0.00 0.00 3.01
2360 6848 1.134371 GCTCCACCACTCCACCTATTC 60.134 57.143 0.00 0.00 0.00 1.75
2361 6849 0.912486 GCTCCACCACTCCACCTATT 59.088 55.000 0.00 0.00 0.00 1.73
2362 6850 0.252696 TGCTCCACCACTCCACCTAT 60.253 55.000 0.00 0.00 0.00 2.57
2363 6851 0.472925 TTGCTCCACCACTCCACCTA 60.473 55.000 0.00 0.00 0.00 3.08
2364 6852 1.136329 ATTGCTCCACCACTCCACCT 61.136 55.000 0.00 0.00 0.00 4.00
2365 6853 0.251341 AATTGCTCCACCACTCCACC 60.251 55.000 0.00 0.00 0.00 4.61
2366 6854 1.168714 GAATTGCTCCACCACTCCAC 58.831 55.000 0.00 0.00 0.00 4.02
2367 6855 0.321564 CGAATTGCTCCACCACTCCA 60.322 55.000 0.00 0.00 0.00 3.86
2368 6856 0.036388 TCGAATTGCTCCACCACTCC 60.036 55.000 0.00 0.00 0.00 3.85
2369 6857 1.363744 CTCGAATTGCTCCACCACTC 58.636 55.000 0.00 0.00 0.00 3.51
2370 6858 0.674895 GCTCGAATTGCTCCACCACT 60.675 55.000 0.00 0.00 0.00 4.00
2371 6859 1.648467 GGCTCGAATTGCTCCACCAC 61.648 60.000 0.00 0.00 0.00 4.16
2372 6860 1.377202 GGCTCGAATTGCTCCACCA 60.377 57.895 0.00 0.00 0.00 4.17
2373 6861 1.372087 CTGGCTCGAATTGCTCCACC 61.372 60.000 0.00 0.00 0.00 4.61
2374 6862 1.372087 CCTGGCTCGAATTGCTCCAC 61.372 60.000 0.00 0.00 0.00 4.02
2375 6863 1.078214 CCTGGCTCGAATTGCTCCA 60.078 57.895 0.00 0.00 0.00 3.86
2376 6864 2.476320 GCCTGGCTCGAATTGCTCC 61.476 63.158 12.43 0.00 0.00 4.70
2377 6865 1.308069 TTGCCTGGCTCGAATTGCTC 61.308 55.000 21.03 0.00 0.00 4.26
2378 6866 0.895100 TTTGCCTGGCTCGAATTGCT 60.895 50.000 21.03 0.00 0.00 3.91
2379 6867 0.733909 GTTTGCCTGGCTCGAATTGC 60.734 55.000 21.03 0.00 0.00 3.56
2380 6868 0.597568 TGTTTGCCTGGCTCGAATTG 59.402 50.000 21.03 0.00 0.00 2.32
2381 6869 0.883833 CTGTTTGCCTGGCTCGAATT 59.116 50.000 21.03 0.00 0.00 2.17
2382 6870 1.589716 GCTGTTTGCCTGGCTCGAAT 61.590 55.000 21.03 0.00 35.15 3.34
2383 6871 2.260869 GCTGTTTGCCTGGCTCGAA 61.261 57.895 21.03 9.26 35.15 3.71
2384 6872 2.669569 GCTGTTTGCCTGGCTCGA 60.670 61.111 21.03 2.93 35.15 4.04
2385 6873 4.093952 CGCTGTTTGCCTGGCTCG 62.094 66.667 21.03 9.49 38.78 5.03
2386 6874 2.669569 TCGCTGTTTGCCTGGCTC 60.670 61.111 21.03 10.76 38.78 4.70
2387 6875 2.980233 GTCGCTGTTTGCCTGGCT 60.980 61.111 21.03 0.00 38.78 4.75
2388 6876 4.043200 GGTCGCTGTTTGCCTGGC 62.043 66.667 12.87 12.87 38.78 4.85
2389 6877 3.726517 CGGTCGCTGTTTGCCTGG 61.727 66.667 0.00 0.00 38.78 4.45
2390 6878 2.250939 TTCGGTCGCTGTTTGCCTG 61.251 57.895 0.00 0.00 38.78 4.85
2391 6879 2.110213 TTCGGTCGCTGTTTGCCT 59.890 55.556 0.00 0.00 38.78 4.75
2392 6880 2.251371 GTTCGGTCGCTGTTTGCC 59.749 61.111 0.00 0.00 38.78 4.52
2393 6881 2.127758 CGTTCGGTCGCTGTTTGC 60.128 61.111 0.00 0.00 38.57 3.68
2394 6882 1.200839 GTCGTTCGGTCGCTGTTTG 59.799 57.895 0.00 0.00 0.00 2.93
2395 6883 2.297912 CGTCGTTCGGTCGCTGTTT 61.298 57.895 0.00 0.00 35.71 2.83
2396 6884 2.728383 CGTCGTTCGGTCGCTGTT 60.728 61.111 0.00 0.00 35.71 3.16
2420 6908 3.088500 GAATGCTCGACGCCACAGC 62.089 63.158 0.00 0.00 38.05 4.40
2421 6909 3.084579 GAATGCTCGACGCCACAG 58.915 61.111 4.73 0.00 38.05 3.66
2431 6919 3.255379 GCCCGACGACGAATGCTC 61.255 66.667 9.28 0.00 42.66 4.26
2432 6920 3.583276 TTGCCCGACGACGAATGCT 62.583 57.895 9.28 0.00 42.66 3.79
2433 6921 3.083600 CTTGCCCGACGACGAATGC 62.084 63.158 9.28 8.95 42.66 3.56
2434 6922 3.081133 CTTGCCCGACGACGAATG 58.919 61.111 9.28 0.00 42.66 2.67
2435 6923 2.813908 GCTTGCCCGACGACGAAT 60.814 61.111 9.28 0.00 42.66 3.34
2436 6924 3.583276 ATGCTTGCCCGACGACGAA 62.583 57.895 9.28 0.00 42.66 3.85
2437 6925 4.063967 ATGCTTGCCCGACGACGA 62.064 61.111 9.28 0.00 42.66 4.20
2438 6926 3.853330 CATGCTTGCCCGACGACG 61.853 66.667 0.00 0.00 39.43 5.12
2439 6927 2.434185 TCATGCTTGCCCGACGAC 60.434 61.111 0.00 0.00 0.00 4.34
2440 6928 2.125552 CTCATGCTTGCCCGACGA 60.126 61.111 0.00 0.00 0.00 4.20
2441 6929 3.197790 CCTCATGCTTGCCCGACG 61.198 66.667 0.00 0.00 0.00 5.12
2442 6930 3.512516 GCCTCATGCTTGCCCGAC 61.513 66.667 0.00 0.00 36.87 4.79
2445 6933 3.818787 CACGCCTCATGCTTGCCC 61.819 66.667 0.00 0.00 38.05 5.36
2446 6934 3.818787 CCACGCCTCATGCTTGCC 61.819 66.667 0.00 0.00 37.88 4.52
2447 6935 4.487412 GCCACGCCTCATGCTTGC 62.487 66.667 0.00 0.00 37.88 4.01
2448 6936 2.749044 AGCCACGCCTCATGCTTG 60.749 61.111 0.00 0.00 38.87 4.01
2449 6937 2.749044 CAGCCACGCCTCATGCTT 60.749 61.111 0.00 0.00 38.05 3.91
2450 6938 4.790962 CCAGCCACGCCTCATGCT 62.791 66.667 0.00 0.00 38.05 3.79
2464 6952 3.947132 CTGTCTCACCAGCGCCCAG 62.947 68.421 2.29 0.00 0.00 4.45
2465 6953 4.007644 CTGTCTCACCAGCGCCCA 62.008 66.667 2.29 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.