Multiple sequence alignment - TraesCS6A01G262200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G262200 chr6A 100.000 3609 0 0 1 3609 485379761 485376153 0.000000e+00 6665.0
1 TraesCS6A01G262200 chr6A 90.769 65 6 0 265 329 503763061 503762997 1.790000e-13 87.9
2 TraesCS6A01G262200 chr6A 92.157 51 2 2 4 53 477138518 477138567 1.800000e-08 71.3
3 TraesCS6A01G262200 chr6D 89.014 3013 106 72 719 3568 345047838 345044888 0.000000e+00 3522.0
4 TraesCS6A01G262200 chr6D 94.258 209 12 0 59 267 3331875 3331667 1.620000e-83 320.0
5 TraesCS6A01G262200 chr6D 94.258 209 12 0 59 267 3337755 3337547 1.620000e-83 320.0
6 TraesCS6A01G262200 chr6D 88.489 278 15 7 456 733 345048114 345047854 1.620000e-83 320.0
7 TraesCS6A01G262200 chr6D 91.346 104 9 0 355 458 345048320 345048217 3.760000e-30 143.0
8 TraesCS6A01G262200 chr6D 92.188 64 5 0 265 328 390481355 390481418 1.380000e-14 91.6
9 TraesCS6A01G262200 chr6D 90.385 52 4 1 4 55 187022778 187022728 2.330000e-07 67.6
10 TraesCS6A01G262200 chr6D 88.333 60 2 4 4 59 442272565 442272507 2.330000e-07 67.6
11 TraesCS6A01G262200 chr6B 88.806 2537 97 68 556 2958 520849091 520846608 0.000000e+00 2939.0
12 TraesCS6A01G262200 chr6B 86.482 614 34 15 2980 3568 520846616 520846027 2.370000e-176 628.0
13 TraesCS6A01G262200 chr6B 93.839 211 12 1 57 267 478330576 478330785 2.090000e-82 316.0
14 TraesCS6A01G262200 chr6B 95.000 60 3 0 269 328 545218559 545218500 1.070000e-15 95.3
15 TraesCS6A01G262200 chr7D 94.712 208 11 0 59 266 326052752 326052545 1.250000e-84 324.0
16 TraesCS6A01G262200 chr1D 94.712 208 11 0 59 266 15293482 15293275 1.250000e-84 324.0
17 TraesCS6A01G262200 chr2D 93.868 212 13 0 59 270 284560164 284559953 1.620000e-83 320.0
18 TraesCS6A01G262200 chr4D 94.231 208 12 0 59 266 446173867 446174074 5.810000e-83 318.0
19 TraesCS6A01G262200 chr3B 92.035 226 14 4 59 282 776095810 776095587 7.520000e-82 315.0
20 TraesCS6A01G262200 chr3B 93.333 60 4 0 269 328 478580433 478580374 4.960000e-14 89.8
21 TraesCS6A01G262200 chr3B 89.474 57 5 1 4 59 51218041 51217985 1.800000e-08 71.3
22 TraesCS6A01G262200 chrUn 92.857 210 15 0 59 268 99192570 99192361 4.530000e-79 305.0
23 TraesCS6A01G262200 chr5D 96.610 59 2 0 267 325 539985654 539985712 8.250000e-17 99.0
24 TraesCS6A01G262200 chr5D 90.566 53 2 3 4 54 505901388 505901439 2.330000e-07 67.6
25 TraesCS6A01G262200 chr5B 94.828 58 3 0 271 328 275235326 275235269 1.380000e-14 91.6
26 TraesCS6A01G262200 chr4A 93.333 60 4 0 269 328 606622602 606622543 4.960000e-14 89.8
27 TraesCS6A01G262200 chr4B 90.769 65 6 0 264 328 562352596 562352660 1.790000e-13 87.9
28 TraesCS6A01G262200 chr4B 90.385 52 4 1 4 55 604138191 604138141 2.330000e-07 67.6
29 TraesCS6A01G262200 chr3A 92.063 63 4 1 265 327 593351730 593351791 1.790000e-13 87.9
30 TraesCS6A01G262200 chr5A 86.765 68 4 3 4 67 475712450 475712384 1.800000e-08 71.3
31 TraesCS6A01G262200 chr7A 90.385 52 4 1 4 55 120137530 120137480 2.330000e-07 67.6
32 TraesCS6A01G262200 chr3D 90.385 52 3 2 4 54 533865277 533865227 2.330000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G262200 chr6A 485376153 485379761 3608 True 6665.000000 6665 100.000000 1 3609 1 chr6A.!!$R1 3608
1 TraesCS6A01G262200 chr6D 345044888 345048320 3432 True 1328.333333 3522 89.616333 355 3568 3 chr6D.!!$R5 3213
2 TraesCS6A01G262200 chr6B 520846027 520849091 3064 True 1783.500000 2939 87.644000 556 3568 2 chr6B.!!$R2 3012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.102481 AGGCATACGCGTAGGACTTG 59.898 55.0 32.00 21.11 29.76 3.16 F
245 246 0.179119 GGCATACGCGTAGGACTTGT 60.179 55.0 32.58 7.83 39.92 3.16 F
1520 1791 0.105039 GGCCAAGGAGGAGTACATCG 59.895 60.0 0.00 0.00 41.22 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1642 1.082561 CAATCAATCGGCGGCATCG 60.083 57.895 10.53 0.0 39.81 3.84 R
1864 2135 1.143183 GCTCGCCCTGGTCGATAAA 59.857 57.895 0.00 0.0 35.25 1.40 R
2989 3334 0.035439 ACATAACAGCCAACCGAGGG 60.035 55.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.895607 TCGATGTCATTGATTTTACGCTAA 57.104 33.333 0.00 0.00 0.00 3.09
24 25 6.933130 TCGATGTCATTGATTTTACGCTAAG 58.067 36.000 0.00 0.00 0.00 2.18
25 26 6.754675 TCGATGTCATTGATTTTACGCTAAGA 59.245 34.615 0.00 0.00 0.00 2.10
26 27 7.438160 TCGATGTCATTGATTTTACGCTAAGAT 59.562 33.333 0.00 0.00 0.00 2.40
27 28 8.064222 CGATGTCATTGATTTTACGCTAAGATT 58.936 33.333 0.00 0.00 0.00 2.40
28 29 9.374960 GATGTCATTGATTTTACGCTAAGATTC 57.625 33.333 0.00 0.00 0.00 2.52
29 30 7.398746 TGTCATTGATTTTACGCTAAGATTCG 58.601 34.615 0.00 0.00 0.00 3.34
30 31 7.064134 TGTCATTGATTTTACGCTAAGATTCGT 59.936 33.333 0.00 0.00 42.09 3.85
31 32 7.370836 GTCATTGATTTTACGCTAAGATTCGTG 59.629 37.037 0.00 0.00 39.46 4.35
32 33 5.138800 TGATTTTACGCTAAGATTCGTGC 57.861 39.130 0.00 0.00 39.46 5.34
33 34 4.627900 TGATTTTACGCTAAGATTCGTGCA 59.372 37.500 0.00 0.00 39.46 4.57
34 35 4.994220 TTTTACGCTAAGATTCGTGCAA 57.006 36.364 0.00 0.00 39.46 4.08
35 36 4.577687 TTTACGCTAAGATTCGTGCAAG 57.422 40.909 0.00 0.00 39.46 4.01
36 37 2.080286 ACGCTAAGATTCGTGCAAGT 57.920 45.000 0.00 0.00 37.55 3.16
37 38 2.413837 ACGCTAAGATTCGTGCAAGTT 58.586 42.857 0.00 0.00 37.55 2.66
38 39 2.806244 ACGCTAAGATTCGTGCAAGTTT 59.194 40.909 0.00 0.00 37.55 2.66
39 40 3.250040 ACGCTAAGATTCGTGCAAGTTTT 59.750 39.130 0.00 0.00 37.55 2.43
40 41 4.219033 CGCTAAGATTCGTGCAAGTTTTT 58.781 39.130 0.00 0.00 0.00 1.94
73 74 8.788325 TCTTTTTACTTCTCAGTTTATAGGGC 57.212 34.615 0.00 0.00 34.06 5.19
74 75 7.548075 TCTTTTTACTTCTCAGTTTATAGGGCG 59.452 37.037 0.00 0.00 34.06 6.13
75 76 5.927281 TTACTTCTCAGTTTATAGGGCGT 57.073 39.130 0.00 0.00 34.06 5.68
76 77 4.124851 ACTTCTCAGTTTATAGGGCGTG 57.875 45.455 0.00 0.00 0.00 5.34
77 78 2.596904 TCTCAGTTTATAGGGCGTGC 57.403 50.000 0.00 0.00 0.00 5.34
78 79 1.828595 TCTCAGTTTATAGGGCGTGCA 59.171 47.619 0.00 0.00 0.00 4.57
79 80 1.933853 CTCAGTTTATAGGGCGTGCAC 59.066 52.381 6.82 6.82 0.00 4.57
80 81 0.650512 CAGTTTATAGGGCGTGCACG 59.349 55.000 34.01 34.01 43.27 5.34
81 82 0.248289 AGTTTATAGGGCGTGCACGT 59.752 50.000 36.80 22.06 42.22 4.49
82 83 1.477700 AGTTTATAGGGCGTGCACGTA 59.522 47.619 36.80 23.46 42.22 3.57
83 84 1.589779 GTTTATAGGGCGTGCACGTAC 59.410 52.381 36.80 28.93 42.22 3.67
84 85 0.102844 TTATAGGGCGTGCACGTACC 59.897 55.000 36.80 34.88 42.22 3.34
85 86 1.737355 TATAGGGCGTGCACGTACCC 61.737 60.000 34.71 34.71 40.52 3.69
88 89 3.762247 GGCGTGCACGTACCCCTA 61.762 66.667 36.80 0.00 42.22 3.53
89 90 2.497770 GCGTGCACGTACCCCTAT 59.502 61.111 36.80 0.00 42.22 2.57
90 91 1.881252 GCGTGCACGTACCCCTATG 60.881 63.158 36.80 8.83 42.22 2.23
91 92 1.514087 CGTGCACGTACCCCTATGT 59.486 57.895 30.50 0.00 34.11 2.29
92 93 0.526954 CGTGCACGTACCCCTATGTC 60.527 60.000 30.50 0.00 34.11 3.06
93 94 0.526954 GTGCACGTACCCCTATGTCG 60.527 60.000 0.00 0.00 0.00 4.35
94 95 0.966875 TGCACGTACCCCTATGTCGT 60.967 55.000 0.00 0.00 35.12 4.34
95 96 0.248784 GCACGTACCCCTATGTCGTC 60.249 60.000 0.00 0.00 32.47 4.20
96 97 1.097232 CACGTACCCCTATGTCGTCA 58.903 55.000 0.00 0.00 32.47 4.35
97 98 1.473677 CACGTACCCCTATGTCGTCAA 59.526 52.381 0.00 0.00 32.47 3.18
98 99 2.100252 CACGTACCCCTATGTCGTCAAT 59.900 50.000 0.00 0.00 32.47 2.57
99 100 2.762327 ACGTACCCCTATGTCGTCAATT 59.238 45.455 0.00 0.00 0.00 2.32
100 101 3.196254 ACGTACCCCTATGTCGTCAATTT 59.804 43.478 0.00 0.00 0.00 1.82
101 102 3.554324 CGTACCCCTATGTCGTCAATTTG 59.446 47.826 0.00 0.00 0.00 2.32
102 103 3.992943 ACCCCTATGTCGTCAATTTGA 57.007 42.857 0.00 0.00 0.00 2.69
103 104 3.606687 ACCCCTATGTCGTCAATTTGAC 58.393 45.455 17.76 17.76 43.65 3.18
104 105 2.943033 CCCCTATGTCGTCAATTTGACC 59.057 50.000 20.87 10.49 44.20 4.02
105 106 3.605634 CCCTATGTCGTCAATTTGACCA 58.394 45.455 20.87 15.09 44.20 4.02
106 107 4.006989 CCCTATGTCGTCAATTTGACCAA 58.993 43.478 20.87 9.06 44.20 3.67
107 108 4.142687 CCCTATGTCGTCAATTTGACCAAC 60.143 45.833 20.87 18.64 44.20 3.77
108 109 3.915437 ATGTCGTCAATTTGACCAACC 57.085 42.857 20.87 8.95 44.20 3.77
109 110 2.925724 TGTCGTCAATTTGACCAACCT 58.074 42.857 20.87 0.00 44.20 3.50
110 111 4.074627 TGTCGTCAATTTGACCAACCTA 57.925 40.909 20.87 5.24 44.20 3.08
111 112 4.062293 TGTCGTCAATTTGACCAACCTAG 58.938 43.478 20.87 7.72 44.20 3.02
112 113 4.062991 GTCGTCAATTTGACCAACCTAGT 58.937 43.478 20.87 0.00 44.20 2.57
113 114 5.221481 TGTCGTCAATTTGACCAACCTAGTA 60.221 40.000 20.87 4.09 44.20 1.82
114 115 5.119743 GTCGTCAATTTGACCAACCTAGTAC 59.880 44.000 20.87 5.03 44.20 2.73
115 116 4.992319 CGTCAATTTGACCAACCTAGTACA 59.008 41.667 20.87 0.00 44.20 2.90
116 117 5.467399 CGTCAATTTGACCAACCTAGTACAA 59.533 40.000 20.87 0.00 44.20 2.41
117 118 6.347402 CGTCAATTTGACCAACCTAGTACAAG 60.347 42.308 20.87 1.46 44.20 3.16
118 119 6.485648 GTCAATTTGACCAACCTAGTACAAGT 59.514 38.462 17.07 0.00 41.37 3.16
119 120 6.708949 TCAATTTGACCAACCTAGTACAAGTC 59.291 38.462 0.00 0.00 0.00 3.01
120 121 5.617528 TTTGACCAACCTAGTACAAGTCA 57.382 39.130 0.00 0.00 0.00 3.41
121 122 5.818678 TTGACCAACCTAGTACAAGTCAT 57.181 39.130 0.00 0.00 33.21 3.06
122 123 6.921486 TTGACCAACCTAGTACAAGTCATA 57.079 37.500 0.00 0.00 33.21 2.15
123 124 7.490657 TTGACCAACCTAGTACAAGTCATAT 57.509 36.000 0.00 0.00 33.21 1.78
124 125 8.598202 TTGACCAACCTAGTACAAGTCATATA 57.402 34.615 0.00 0.00 33.21 0.86
125 126 8.777578 TGACCAACCTAGTACAAGTCATATAT 57.222 34.615 0.00 0.00 0.00 0.86
126 127 9.209048 TGACCAACCTAGTACAAGTCATATATT 57.791 33.333 0.00 0.00 0.00 1.28
164 165 9.520515 ACCAACATAAACTTGAGATGTTCTATT 57.479 29.630 0.00 0.00 40.85 1.73
223 224 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
224 225 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
225 226 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
226 227 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
227 228 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
228 229 4.441495 GGTGATAAAATTGGCAACCTAGGC 60.441 45.833 9.30 0.00 0.00 3.93
229 230 4.159506 GTGATAAAATTGGCAACCTAGGCA 59.840 41.667 9.30 0.00 42.83 4.75
230 231 4.961730 TGATAAAATTGGCAACCTAGGCAT 59.038 37.500 9.30 0.00 44.02 4.40
231 232 6.040391 GTGATAAAATTGGCAACCTAGGCATA 59.960 38.462 9.30 0.00 44.02 3.14
232 233 4.736126 AAAATTGGCAACCTAGGCATAC 57.264 40.909 9.30 0.00 44.02 2.39
233 234 1.967319 ATTGGCAACCTAGGCATACG 58.033 50.000 9.30 0.00 44.02 3.06
234 235 0.746563 TTGGCAACCTAGGCATACGC 60.747 55.000 9.30 4.28 44.02 4.42
235 236 2.244651 GGCAACCTAGGCATACGCG 61.245 63.158 9.30 3.53 39.92 6.01
236 237 1.520787 GCAACCTAGGCATACGCGT 60.521 57.895 19.17 19.17 39.92 6.01
237 238 0.249155 GCAACCTAGGCATACGCGTA 60.249 55.000 22.94 22.94 39.92 4.42
242 243 3.409201 TAGGCATACGCGTAGGACT 57.591 52.632 37.50 37.50 38.86 3.85
243 244 1.683943 TAGGCATACGCGTAGGACTT 58.316 50.000 39.96 24.93 36.49 3.01
244 245 0.102481 AGGCATACGCGTAGGACTTG 59.898 55.000 32.00 21.11 29.76 3.16
245 246 0.179119 GGCATACGCGTAGGACTTGT 60.179 55.000 32.58 7.83 39.92 3.16
246 247 1.066002 GGCATACGCGTAGGACTTGTA 59.934 52.381 32.58 4.92 39.92 2.41
247 248 2.480073 GGCATACGCGTAGGACTTGTAA 60.480 50.000 32.58 4.08 39.92 2.41
248 249 3.181397 GCATACGCGTAGGACTTGTAAA 58.819 45.455 32.58 3.49 0.00 2.01
249 250 3.000376 GCATACGCGTAGGACTTGTAAAC 60.000 47.826 32.58 9.17 0.00 2.01
250 251 4.418392 CATACGCGTAGGACTTGTAAACT 58.582 43.478 25.48 0.00 0.00 2.66
251 252 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
252 253 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
253 254 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
254 255 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
255 256 4.387862 CGCGTAGGACTTGTAAACTGAAAT 59.612 41.667 0.00 0.00 0.00 2.17
256 257 5.618561 GCGTAGGACTTGTAAACTGAAATG 58.381 41.667 0.00 0.00 0.00 2.32
257 258 5.390567 GCGTAGGACTTGTAAACTGAAATGG 60.391 44.000 0.00 0.00 0.00 3.16
258 259 5.929992 CGTAGGACTTGTAAACTGAAATGGA 59.070 40.000 0.00 0.00 0.00 3.41
259 260 6.090898 CGTAGGACTTGTAAACTGAAATGGAG 59.909 42.308 0.00 0.00 0.00 3.86
260 261 5.316987 AGGACTTGTAAACTGAAATGGAGG 58.683 41.667 0.00 0.00 0.00 4.30
261 262 4.459337 GGACTTGTAAACTGAAATGGAGGG 59.541 45.833 0.00 0.00 0.00 4.30
262 263 5.313712 GACTTGTAAACTGAAATGGAGGGA 58.686 41.667 0.00 0.00 0.00 4.20
263 264 5.316987 ACTTGTAAACTGAAATGGAGGGAG 58.683 41.667 0.00 0.00 0.00 4.30
264 265 4.993705 TGTAAACTGAAATGGAGGGAGT 57.006 40.909 0.00 0.00 0.00 3.85
265 266 6.043938 ACTTGTAAACTGAAATGGAGGGAGTA 59.956 38.462 0.00 0.00 0.00 2.59
266 267 6.049955 TGTAAACTGAAATGGAGGGAGTAG 57.950 41.667 0.00 0.00 0.00 2.57
267 268 3.636153 AACTGAAATGGAGGGAGTAGC 57.364 47.619 0.00 0.00 0.00 3.58
268 269 2.839228 ACTGAAATGGAGGGAGTAGCT 58.161 47.619 0.00 0.00 0.00 3.32
269 270 3.185455 ACTGAAATGGAGGGAGTAGCTT 58.815 45.455 0.00 0.00 0.00 3.74
270 271 3.054802 ACTGAAATGGAGGGAGTAGCTTG 60.055 47.826 0.00 0.00 0.00 4.01
271 272 3.181329 TGAAATGGAGGGAGTAGCTTGA 58.819 45.455 0.00 0.00 0.00 3.02
272 273 3.782523 TGAAATGGAGGGAGTAGCTTGAT 59.217 43.478 0.00 0.00 0.00 2.57
273 274 4.228210 TGAAATGGAGGGAGTAGCTTGATT 59.772 41.667 0.00 0.00 0.00 2.57
274 275 3.853355 ATGGAGGGAGTAGCTTGATTG 57.147 47.619 0.00 0.00 0.00 2.67
275 276 2.832838 TGGAGGGAGTAGCTTGATTGA 58.167 47.619 0.00 0.00 0.00 2.57
276 277 2.768527 TGGAGGGAGTAGCTTGATTGAG 59.231 50.000 0.00 0.00 0.00 3.02
277 278 2.769095 GGAGGGAGTAGCTTGATTGAGT 59.231 50.000 0.00 0.00 0.00 3.41
278 279 3.181470 GGAGGGAGTAGCTTGATTGAGTC 60.181 52.174 0.00 0.00 0.00 3.36
279 280 3.445008 AGGGAGTAGCTTGATTGAGTCA 58.555 45.455 0.00 0.00 34.25 3.41
280 281 3.196685 AGGGAGTAGCTTGATTGAGTCAC 59.803 47.826 0.00 0.00 36.32 3.67
281 282 3.526534 GGAGTAGCTTGATTGAGTCACC 58.473 50.000 0.00 0.00 36.32 4.02
282 283 3.196685 GGAGTAGCTTGATTGAGTCACCT 59.803 47.826 0.00 0.00 36.32 4.00
283 284 4.402793 GGAGTAGCTTGATTGAGTCACCTA 59.597 45.833 0.00 0.00 36.32 3.08
284 285 5.451242 GGAGTAGCTTGATTGAGTCACCTAG 60.451 48.000 0.00 0.00 36.32 3.02
285 286 5.265191 AGTAGCTTGATTGAGTCACCTAGA 58.735 41.667 0.00 0.00 36.32 2.43
286 287 5.896678 AGTAGCTTGATTGAGTCACCTAGAT 59.103 40.000 0.00 0.00 36.32 1.98
287 288 5.021033 AGCTTGATTGAGTCACCTAGATG 57.979 43.478 0.00 0.00 36.32 2.90
288 289 4.469227 AGCTTGATTGAGTCACCTAGATGT 59.531 41.667 0.00 0.00 36.32 3.06
289 290 4.569966 GCTTGATTGAGTCACCTAGATGTG 59.430 45.833 0.00 0.00 36.32 3.21
290 291 4.128925 TGATTGAGTCACCTAGATGTGC 57.871 45.455 0.00 0.00 36.17 4.57
291 292 3.515104 TGATTGAGTCACCTAGATGTGCA 59.485 43.478 0.00 0.00 36.17 4.57
292 293 4.020307 TGATTGAGTCACCTAGATGTGCAA 60.020 41.667 0.00 0.00 36.17 4.08
293 294 4.558226 TTGAGTCACCTAGATGTGCAAT 57.442 40.909 0.00 0.00 36.17 3.56
294 295 5.675684 TTGAGTCACCTAGATGTGCAATA 57.324 39.130 0.00 0.00 36.17 1.90
295 296 5.675684 TGAGTCACCTAGATGTGCAATAA 57.324 39.130 0.00 0.00 36.17 1.40
296 297 6.239217 TGAGTCACCTAGATGTGCAATAAT 57.761 37.500 0.00 0.00 36.17 1.28
297 298 6.653020 TGAGTCACCTAGATGTGCAATAATT 58.347 36.000 0.00 0.00 36.17 1.40
298 299 7.112122 TGAGTCACCTAGATGTGCAATAATTT 58.888 34.615 0.00 0.00 36.17 1.82
299 300 7.066163 TGAGTCACCTAGATGTGCAATAATTTG 59.934 37.037 0.00 0.00 36.17 2.32
300 301 6.319658 AGTCACCTAGATGTGCAATAATTTGG 59.680 38.462 0.00 0.00 36.17 3.28
301 302 5.593909 TCACCTAGATGTGCAATAATTTGGG 59.406 40.000 0.00 0.00 36.17 4.12
302 303 4.342092 ACCTAGATGTGCAATAATTTGGGC 59.658 41.667 0.00 0.00 33.22 5.36
303 304 4.341806 CCTAGATGTGCAATAATTTGGGCA 59.658 41.667 0.00 0.00 33.22 5.36
310 311 5.518848 TGCAATAATTTGGGCACATCTAG 57.481 39.130 0.00 0.00 33.22 2.43
311 312 5.199723 TGCAATAATTTGGGCACATCTAGA 58.800 37.500 0.00 0.00 33.22 2.43
312 313 5.834742 TGCAATAATTTGGGCACATCTAGAT 59.165 36.000 0.00 0.00 33.22 1.98
313 314 6.154445 GCAATAATTTGGGCACATCTAGATG 58.846 40.000 27.63 27.63 37.77 2.90
314 315 6.239120 GCAATAATTTGGGCACATCTAGATGT 60.239 38.462 28.95 28.95 41.56 3.06
325 326 4.517952 CATCTAGATGTGCCCTAGACAG 57.482 50.000 22.42 0.00 43.57 3.51
326 327 3.953542 TCTAGATGTGCCCTAGACAGA 57.046 47.619 0.00 0.00 38.08 3.41
327 328 3.556999 TCTAGATGTGCCCTAGACAGAC 58.443 50.000 0.00 0.00 38.08 3.51
328 329 2.541233 AGATGTGCCCTAGACAGACT 57.459 50.000 0.00 0.00 0.00 3.24
329 330 3.671740 AGATGTGCCCTAGACAGACTA 57.328 47.619 0.00 0.00 0.00 2.59
330 331 3.982516 AGATGTGCCCTAGACAGACTAA 58.017 45.455 0.00 0.00 0.00 2.24
331 332 3.702045 AGATGTGCCCTAGACAGACTAAC 59.298 47.826 0.00 0.00 0.00 2.34
332 333 2.176889 TGTGCCCTAGACAGACTAACC 58.823 52.381 0.00 0.00 0.00 2.85
333 334 2.176889 GTGCCCTAGACAGACTAACCA 58.823 52.381 0.00 0.00 0.00 3.67
334 335 2.766828 GTGCCCTAGACAGACTAACCAT 59.233 50.000 0.00 0.00 0.00 3.55
335 336 3.031736 TGCCCTAGACAGACTAACCATC 58.968 50.000 0.00 0.00 0.00 3.51
336 337 3.031736 GCCCTAGACAGACTAACCATCA 58.968 50.000 0.00 0.00 0.00 3.07
337 338 3.181474 GCCCTAGACAGACTAACCATCAC 60.181 52.174 0.00 0.00 0.00 3.06
338 339 3.385111 CCCTAGACAGACTAACCATCACC 59.615 52.174 0.00 0.00 0.00 4.02
339 340 4.282496 CCTAGACAGACTAACCATCACCT 58.718 47.826 0.00 0.00 0.00 4.00
340 341 4.712337 CCTAGACAGACTAACCATCACCTT 59.288 45.833 0.00 0.00 0.00 3.50
341 342 5.187967 CCTAGACAGACTAACCATCACCTTT 59.812 44.000 0.00 0.00 0.00 3.11
342 343 5.568620 AGACAGACTAACCATCACCTTTT 57.431 39.130 0.00 0.00 0.00 2.27
343 344 5.552178 AGACAGACTAACCATCACCTTTTC 58.448 41.667 0.00 0.00 0.00 2.29
344 345 5.071788 AGACAGACTAACCATCACCTTTTCA 59.928 40.000 0.00 0.00 0.00 2.69
345 346 5.690865 ACAGACTAACCATCACCTTTTCAA 58.309 37.500 0.00 0.00 0.00 2.69
346 347 5.765182 ACAGACTAACCATCACCTTTTCAAG 59.235 40.000 0.00 0.00 0.00 3.02
386 387 9.169592 CCATCACTTCATAATATATGACATGCA 57.830 33.333 0.00 0.00 0.00 3.96
388 389 9.955102 ATCACTTCATAATATATGACATGCACT 57.045 29.630 0.00 0.00 0.00 4.40
481 587 7.374272 ACATTACTGATCTTATCGATGGTCAG 58.626 38.462 19.34 19.34 30.84 3.51
490 596 5.948758 TCTTATCGATGGTCAGCATAGATCT 59.051 40.000 14.84 0.00 0.00 2.75
513 619 4.965762 TCGAAATACGCATTAGACACTACG 59.034 41.667 0.00 0.00 42.26 3.51
524 630 6.237755 GCATTAGACACTACGTTTATGGACAC 60.238 42.308 0.00 0.00 0.00 3.67
528 634 4.806330 ACACTACGTTTATGGACACAGAG 58.194 43.478 0.00 0.00 0.00 3.35
613 724 5.047448 TCCAAAATTCGAAAGATTGGATGCA 60.047 36.000 26.10 13.13 46.35 3.96
618 729 2.819019 TCGAAAGATTGGATGCAAAGCA 59.181 40.909 2.94 0.00 38.03 3.91
619 730 3.444742 TCGAAAGATTGGATGCAAAGCAT 59.555 39.130 2.94 3.85 44.05 3.79
637 751 2.357569 GCATGGAAGGGGTGATCTCTTT 60.358 50.000 0.00 0.00 0.00 2.52
638 752 3.285484 CATGGAAGGGGTGATCTCTTTG 58.715 50.000 0.00 0.00 0.00 2.77
653 767 3.860930 TTTGCTCCAACCGCTCCCC 62.861 63.158 0.00 0.00 0.00 4.81
661 775 3.868200 AACCGCTCCCCTGCCAAAG 62.868 63.158 0.00 0.00 0.00 2.77
675 789 1.468914 GCCAAAGGAAGAAACGCCTAG 59.531 52.381 0.00 0.00 33.20 3.02
751 894 0.321564 CCCCTGCATTGACGTCAAGA 60.322 55.000 32.19 19.01 39.47 3.02
792 936 6.726490 GGATTCTTCCCCTAATTTTAACCC 57.274 41.667 0.00 0.00 35.84 4.11
819 963 2.492773 CCCGCAATCCAGCCAATCC 61.493 63.158 0.00 0.00 0.00 3.01
821 965 1.321805 CCGCAATCCAGCCAATCCAA 61.322 55.000 0.00 0.00 0.00 3.53
822 966 0.531657 CGCAATCCAGCCAATCCAAA 59.468 50.000 0.00 0.00 0.00 3.28
823 967 1.137479 CGCAATCCAGCCAATCCAAAT 59.863 47.619 0.00 0.00 0.00 2.32
930 1109 0.952010 GTTTTAAGGGGAGCGTGCGA 60.952 55.000 0.00 0.00 0.00 5.10
931 1110 0.250381 TTTTAAGGGGAGCGTGCGAA 60.250 50.000 0.00 0.00 0.00 4.70
932 1111 0.952010 TTTAAGGGGAGCGTGCGAAC 60.952 55.000 0.00 0.00 0.00 3.95
933 1112 1.823169 TTAAGGGGAGCGTGCGAACT 61.823 55.000 0.00 0.00 0.00 3.01
934 1113 2.501223 TAAGGGGAGCGTGCGAACTG 62.501 60.000 0.00 0.00 0.00 3.16
1041 1237 0.250166 AGTTTTCTTCCCCGTCACCG 60.250 55.000 0.00 0.00 0.00 4.94
1065 1283 0.520404 TCGTCCGTTTCTTCTCCTCG 59.480 55.000 0.00 0.00 0.00 4.63
1173 1417 3.839432 CCCCTCTCGCGTCTTCCC 61.839 72.222 5.77 0.00 0.00 3.97
1200 1444 1.166531 AGCTGTTCGTCTGGTTTGGC 61.167 55.000 0.00 0.00 0.00 4.52
1282 1526 3.066190 TGCCCAAGCAGCAGCATC 61.066 61.111 3.17 0.00 46.52 3.91
1283 1527 3.066190 GCCCAAGCAGCAGCATCA 61.066 61.111 3.17 0.00 45.49 3.07
1284 1528 3.064987 GCCCAAGCAGCAGCATCAG 62.065 63.158 3.17 0.00 45.49 2.90
1285 1529 2.490217 CCAAGCAGCAGCATCAGC 59.510 61.111 3.17 0.00 45.49 4.26
1286 1530 2.340328 CCAAGCAGCAGCATCAGCA 61.340 57.895 3.17 0.00 45.49 4.41
1287 1531 1.137614 CAAGCAGCAGCATCAGCAG 59.862 57.895 3.17 0.00 45.49 4.24
1293 1537 4.861883 CAGCATCAGCAGCAACAC 57.138 55.556 0.00 0.00 45.49 3.32
1372 1628 4.389576 GTGCGTTTGCCTGCCTCG 62.390 66.667 0.00 0.00 41.78 4.63
1373 1629 4.617520 TGCGTTTGCCTGCCTCGA 62.618 61.111 0.00 0.00 41.78 4.04
1375 1631 2.664851 CGTTTGCCTGCCTCGACA 60.665 61.111 0.00 0.00 0.00 4.35
1520 1791 0.105039 GGCCAAGGAGGAGTACATCG 59.895 60.000 0.00 0.00 41.22 3.84
1521 1792 0.105039 GCCAAGGAGGAGTACATCGG 59.895 60.000 0.00 0.00 41.22 4.18
1750 2021 1.364626 CCGGACAGATGAAGCAGCAC 61.365 60.000 0.00 0.00 0.00 4.40
1821 2092 2.815211 CCATGCCACGACAGTCCG 60.815 66.667 0.00 0.00 0.00 4.79
1832 2103 1.281899 GACAGTCCGATTGTAGCTGC 58.718 55.000 0.00 0.00 0.00 5.25
1837 2108 4.285149 CGATTGTAGCTGCGCGCC 62.285 66.667 30.77 14.69 40.39 6.53
1870 2141 2.701006 CGTGCCCGTGCTTTATCG 59.299 61.111 0.00 0.00 38.71 2.92
1981 2252 4.893601 GGCTACGGGAGAAGGCGC 62.894 72.222 0.00 0.00 0.00 6.53
2196 2467 3.607987 GCCGAATCGTGCTCGTCG 61.608 66.667 12.49 12.49 36.06 5.12
2298 2569 0.179116 CGTCCAGACATCTGAGCCTG 60.179 60.000 10.55 0.00 46.59 4.85
2304 2575 2.267006 CATCTGAGCCTGTGCCGT 59.733 61.111 0.00 0.00 38.69 5.68
2469 2757 0.320771 AGGCGCCATAGCTTATTCCG 60.321 55.000 31.54 0.00 36.60 4.30
2470 2758 1.298859 GGCGCCATAGCTTATTCCGG 61.299 60.000 24.80 0.00 36.60 5.14
2471 2759 0.320421 GCGCCATAGCTTATTCCGGA 60.320 55.000 0.00 0.00 36.60 5.14
2655 2973 0.041312 CCGTCAAGTGCAAAGGTTCG 60.041 55.000 0.00 0.00 0.00 3.95
2711 3039 0.610232 AGGAGGGTTGCTTGTGATGC 60.610 55.000 0.00 0.00 0.00 3.91
2822 3151 1.092921 TATGGCGTTGGCGTCCATTC 61.093 55.000 16.30 0.00 45.52 2.67
2850 3179 4.740431 GTGGCCCGCATTGTTGCC 62.740 66.667 0.00 6.36 46.57 4.52
2934 3279 3.716006 CGTCCTGTGCCGTGCTTG 61.716 66.667 0.00 0.00 0.00 4.01
3007 3352 0.748005 CCCCTCGGTTGGCTGTTATG 60.748 60.000 0.00 0.00 0.00 1.90
3029 3374 4.217550 TGTTTCTTTACATTACAGGCAGGC 59.782 41.667 0.00 0.00 0.00 4.85
3288 3657 3.826265 TTGGAAAGTGGGGCTGGGC 62.826 63.158 0.00 0.00 0.00 5.36
3326 3695 4.548513 CCTCCTCCCTCCTCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
3327 3696 3.756783 CTCCTCCCTCCTCCCCGT 61.757 72.222 0.00 0.00 0.00 5.28
3402 3774 1.589630 CGCCCCTTTTACTTTGGCC 59.410 57.895 0.00 0.00 38.92 5.36
3420 3797 1.713597 CCAAAAAGGAAAGCCATCGC 58.286 50.000 0.00 0.00 41.22 4.58
3423 3800 2.212900 AAAAGGAAAGCCATCGCCGC 62.213 55.000 0.00 0.00 36.29 6.53
3453 3830 1.337071 GGCGATCTTCACGTATCTCCA 59.663 52.381 1.10 0.00 29.22 3.86
3457 3834 0.454600 TCTTCACGTATCTCCACCGC 59.545 55.000 0.00 0.00 0.00 5.68
3472 3849 3.448076 CCGCTGTTGTTTTACGGTG 57.552 52.632 0.00 0.00 39.05 4.94
3490 3867 4.728110 AACCCCCGCCCGCTTTAC 62.728 66.667 0.00 0.00 0.00 2.01
3537 3923 2.203070 CTGATGCGGTACAGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
3568 3954 0.650512 CGTGACATAAATTCGCGCCT 59.349 50.000 0.00 0.00 39.84 5.52
3569 3955 1.592110 CGTGACATAAATTCGCGCCTG 60.592 52.381 0.00 0.00 39.84 4.85
3570 3956 1.663643 GTGACATAAATTCGCGCCTGA 59.336 47.619 0.00 0.00 0.00 3.86
3571 3957 2.287915 GTGACATAAATTCGCGCCTGAT 59.712 45.455 0.00 0.00 0.00 2.90
3572 3958 2.543848 TGACATAAATTCGCGCCTGATC 59.456 45.455 0.00 0.00 0.00 2.92
3573 3959 1.526887 ACATAAATTCGCGCCTGATCG 59.473 47.619 0.00 0.00 0.00 3.69
3574 3960 1.136252 CATAAATTCGCGCCTGATCGG 60.136 52.381 0.00 0.00 0.00 4.18
3575 3961 0.878523 TAAATTCGCGCCTGATCGGG 60.879 55.000 16.98 16.98 42.68 5.14
3576 3962 2.869503 AAATTCGCGCCTGATCGGGT 62.870 55.000 21.88 0.00 42.09 5.28
3577 3963 2.869503 AATTCGCGCCTGATCGGGTT 62.870 55.000 21.88 4.26 42.09 4.11
3578 3964 2.869503 ATTCGCGCCTGATCGGGTTT 62.870 55.000 21.88 0.00 42.09 3.27
3579 3965 3.864686 CGCGCCTGATCGGGTTTG 61.865 66.667 21.88 12.91 37.58 2.93
3580 3966 2.746277 GCGCCTGATCGGGTTTGT 60.746 61.111 21.88 0.00 0.00 2.83
3581 3967 3.039202 GCGCCTGATCGGGTTTGTG 62.039 63.158 21.88 8.22 0.00 3.33
3582 3968 1.375396 CGCCTGATCGGGTTTGTGA 60.375 57.895 21.88 0.00 0.00 3.58
3583 3969 0.744414 CGCCTGATCGGGTTTGTGAT 60.744 55.000 21.88 0.00 0.00 3.06
3584 3970 1.463674 GCCTGATCGGGTTTGTGATT 58.536 50.000 21.88 0.00 0.00 2.57
3585 3971 1.133025 GCCTGATCGGGTTTGTGATTG 59.867 52.381 21.88 0.00 0.00 2.67
3586 3972 2.436417 CCTGATCGGGTTTGTGATTGT 58.564 47.619 12.93 0.00 0.00 2.71
3587 3973 3.605634 CCTGATCGGGTTTGTGATTGTA 58.394 45.455 12.93 0.00 0.00 2.41
3588 3974 4.006989 CCTGATCGGGTTTGTGATTGTAA 58.993 43.478 12.93 0.00 0.00 2.41
3589 3975 4.640201 CCTGATCGGGTTTGTGATTGTAAT 59.360 41.667 12.93 0.00 0.00 1.89
3590 3976 5.449041 CCTGATCGGGTTTGTGATTGTAATG 60.449 44.000 12.93 0.00 0.00 1.90
3591 3977 5.007034 TGATCGGGTTTGTGATTGTAATGT 58.993 37.500 0.00 0.00 0.00 2.71
3592 3978 6.174049 TGATCGGGTTTGTGATTGTAATGTA 58.826 36.000 0.00 0.00 0.00 2.29
3593 3979 6.655425 TGATCGGGTTTGTGATTGTAATGTAA 59.345 34.615 0.00 0.00 0.00 2.41
3594 3980 6.879276 TCGGGTTTGTGATTGTAATGTAAA 57.121 33.333 0.00 0.00 0.00 2.01
3595 3981 6.904498 TCGGGTTTGTGATTGTAATGTAAAG 58.096 36.000 0.00 0.00 0.00 1.85
3596 3982 6.487331 TCGGGTTTGTGATTGTAATGTAAAGT 59.513 34.615 0.00 0.00 0.00 2.66
3597 3983 6.580791 CGGGTTTGTGATTGTAATGTAAAGTG 59.419 38.462 0.00 0.00 0.00 3.16
3598 3984 7.520776 CGGGTTTGTGATTGTAATGTAAAGTGA 60.521 37.037 0.00 0.00 0.00 3.41
3599 3985 8.138712 GGGTTTGTGATTGTAATGTAAAGTGAA 58.861 33.333 0.00 0.00 0.00 3.18
3600 3986 9.180678 GGTTTGTGATTGTAATGTAAAGTGAAG 57.819 33.333 0.00 0.00 0.00 3.02
3601 3987 9.730420 GTTTGTGATTGTAATGTAAAGTGAAGT 57.270 29.630 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.754675 TCTTAGCGTAAAATCAATGACATCGA 59.245 34.615 0.00 0.00 0.00 3.59
1 2 6.933130 TCTTAGCGTAAAATCAATGACATCG 58.067 36.000 0.00 0.00 0.00 3.84
2 3 9.374960 GAATCTTAGCGTAAAATCAATGACATC 57.625 33.333 0.00 0.00 0.00 3.06
3 4 8.064222 CGAATCTTAGCGTAAAATCAATGACAT 58.936 33.333 0.00 0.00 0.00 3.06
4 5 7.064134 ACGAATCTTAGCGTAAAATCAATGACA 59.936 33.333 0.00 0.00 39.21 3.58
5 6 7.370836 CACGAATCTTAGCGTAAAATCAATGAC 59.629 37.037 0.00 0.00 38.92 3.06
6 7 7.398746 CACGAATCTTAGCGTAAAATCAATGA 58.601 34.615 0.00 0.00 38.92 2.57
7 8 6.139169 GCACGAATCTTAGCGTAAAATCAATG 59.861 38.462 0.00 0.00 38.92 2.82
8 9 6.183360 TGCACGAATCTTAGCGTAAAATCAAT 60.183 34.615 0.00 0.00 38.92 2.57
9 10 5.120986 TGCACGAATCTTAGCGTAAAATCAA 59.879 36.000 0.00 0.00 38.92 2.57
10 11 4.627900 TGCACGAATCTTAGCGTAAAATCA 59.372 37.500 0.00 0.00 38.92 2.57
11 12 5.138800 TGCACGAATCTTAGCGTAAAATC 57.861 39.130 0.00 0.00 38.92 2.17
12 13 5.121768 ACTTGCACGAATCTTAGCGTAAAAT 59.878 36.000 0.00 0.00 38.92 1.82
13 14 4.449743 ACTTGCACGAATCTTAGCGTAAAA 59.550 37.500 0.00 0.00 38.92 1.52
14 15 3.991773 ACTTGCACGAATCTTAGCGTAAA 59.008 39.130 0.00 0.00 38.92 2.01
15 16 3.581755 ACTTGCACGAATCTTAGCGTAA 58.418 40.909 0.00 0.00 38.92 3.18
16 17 3.226346 ACTTGCACGAATCTTAGCGTA 57.774 42.857 0.00 0.00 38.92 4.42
17 18 2.080286 ACTTGCACGAATCTTAGCGT 57.920 45.000 0.00 0.00 42.11 5.07
18 19 3.455619 AAACTTGCACGAATCTTAGCG 57.544 42.857 0.00 0.00 0.00 4.26
47 48 9.227777 GCCCTATAAACTGAGAAGTAAAAAGAA 57.772 33.333 0.00 0.00 0.00 2.52
48 49 7.548075 CGCCCTATAAACTGAGAAGTAAAAAGA 59.452 37.037 0.00 0.00 0.00 2.52
49 50 7.333672 ACGCCCTATAAACTGAGAAGTAAAAAG 59.666 37.037 0.00 0.00 0.00 2.27
50 51 7.118680 CACGCCCTATAAACTGAGAAGTAAAAA 59.881 37.037 0.00 0.00 0.00 1.94
51 52 6.592607 CACGCCCTATAAACTGAGAAGTAAAA 59.407 38.462 0.00 0.00 0.00 1.52
52 53 6.103997 CACGCCCTATAAACTGAGAAGTAAA 58.896 40.000 0.00 0.00 0.00 2.01
53 54 5.657474 CACGCCCTATAAACTGAGAAGTAA 58.343 41.667 0.00 0.00 0.00 2.24
54 55 4.441079 GCACGCCCTATAAACTGAGAAGTA 60.441 45.833 0.00 0.00 0.00 2.24
55 56 3.679083 GCACGCCCTATAAACTGAGAAGT 60.679 47.826 0.00 0.00 0.00 3.01
56 57 2.866762 GCACGCCCTATAAACTGAGAAG 59.133 50.000 0.00 0.00 0.00 2.85
57 58 2.235155 TGCACGCCCTATAAACTGAGAA 59.765 45.455 0.00 0.00 0.00 2.87
58 59 1.828595 TGCACGCCCTATAAACTGAGA 59.171 47.619 0.00 0.00 0.00 3.27
59 60 1.933853 GTGCACGCCCTATAAACTGAG 59.066 52.381 0.00 0.00 0.00 3.35
60 61 1.737696 CGTGCACGCCCTATAAACTGA 60.738 52.381 28.16 0.00 0.00 3.41
61 62 0.650512 CGTGCACGCCCTATAAACTG 59.349 55.000 28.16 0.00 0.00 3.16
62 63 0.248289 ACGTGCACGCCCTATAAACT 59.752 50.000 37.35 12.57 44.43 2.66
63 64 1.589779 GTACGTGCACGCCCTATAAAC 59.410 52.381 37.35 18.22 44.43 2.01
64 65 1.471327 GGTACGTGCACGCCCTATAAA 60.471 52.381 37.35 11.10 44.43 1.40
65 66 0.102844 GGTACGTGCACGCCCTATAA 59.897 55.000 37.35 12.50 44.43 0.98
66 67 1.735360 GGTACGTGCACGCCCTATA 59.265 57.895 37.35 19.88 44.43 1.31
67 68 2.497770 GGTACGTGCACGCCCTAT 59.502 61.111 37.35 20.98 44.43 2.57
68 69 3.762247 GGGTACGTGCACGCCCTA 61.762 66.667 34.48 21.70 44.43 3.53
72 73 1.881252 CATAGGGGTACGTGCACGC 60.881 63.158 37.35 22.55 44.43 5.34
73 74 0.526954 GACATAGGGGTACGTGCACG 60.527 60.000 35.99 35.99 46.33 5.34
74 75 0.526954 CGACATAGGGGTACGTGCAC 60.527 60.000 6.82 6.82 0.00 4.57
75 76 0.966875 ACGACATAGGGGTACGTGCA 60.967 55.000 5.86 0.00 35.91 4.57
76 77 0.248784 GACGACATAGGGGTACGTGC 60.249 60.000 0.00 0.00 37.32 5.34
77 78 1.097232 TGACGACATAGGGGTACGTG 58.903 55.000 0.00 0.00 37.32 4.49
78 79 1.838112 TTGACGACATAGGGGTACGT 58.162 50.000 0.00 0.00 39.82 3.57
79 80 3.447918 AATTGACGACATAGGGGTACG 57.552 47.619 0.00 0.00 0.00 3.67
80 81 4.569564 GTCAAATTGACGACATAGGGGTAC 59.430 45.833 10.58 0.00 37.67 3.34
81 82 4.761975 GTCAAATTGACGACATAGGGGTA 58.238 43.478 10.58 0.00 37.67 3.69
82 83 3.606687 GTCAAATTGACGACATAGGGGT 58.393 45.455 10.58 0.00 37.67 4.95
93 94 6.485648 ACTTGTACTAGGTTGGTCAAATTGAC 59.514 38.462 17.16 17.16 46.23 3.18
94 95 6.597562 ACTTGTACTAGGTTGGTCAAATTGA 58.402 36.000 9.17 0.00 0.00 2.57
95 96 6.485313 TGACTTGTACTAGGTTGGTCAAATTG 59.515 38.462 9.17 0.00 30.81 2.32
96 97 6.597562 TGACTTGTACTAGGTTGGTCAAATT 58.402 36.000 9.17 0.00 30.81 1.82
97 98 6.182507 TGACTTGTACTAGGTTGGTCAAAT 57.817 37.500 9.17 0.00 30.81 2.32
98 99 5.617528 TGACTTGTACTAGGTTGGTCAAA 57.382 39.130 9.17 0.00 30.81 2.69
99 100 5.818678 ATGACTTGTACTAGGTTGGTCAA 57.181 39.130 9.17 0.00 36.16 3.18
100 101 8.777578 ATATATGACTTGTACTAGGTTGGTCA 57.222 34.615 9.17 4.36 36.80 4.02
138 139 9.520515 AATAGAACATCTCAAGTTTATGTTGGT 57.479 29.630 11.01 3.88 42.35 3.67
197 198 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
198 199 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
199 200 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
200 201 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
201 202 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
202 203 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
203 204 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
204 205 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
205 206 4.441495 GCCTAGGTTGCCAATTTTATCACC 60.441 45.833 11.31 0.00 0.00 4.02
206 207 4.159506 TGCCTAGGTTGCCAATTTTATCAC 59.840 41.667 11.31 0.00 0.00 3.06
207 208 4.348486 TGCCTAGGTTGCCAATTTTATCA 58.652 39.130 11.31 0.00 0.00 2.15
208 209 5.535753 ATGCCTAGGTTGCCAATTTTATC 57.464 39.130 11.31 0.00 0.00 1.75
209 210 5.009610 CGTATGCCTAGGTTGCCAATTTTAT 59.990 40.000 11.31 0.00 0.00 1.40
210 211 4.336993 CGTATGCCTAGGTTGCCAATTTTA 59.663 41.667 11.31 0.00 0.00 1.52
211 212 3.130340 CGTATGCCTAGGTTGCCAATTTT 59.870 43.478 11.31 0.00 0.00 1.82
212 213 2.687935 CGTATGCCTAGGTTGCCAATTT 59.312 45.455 11.31 0.00 0.00 1.82
213 214 2.297701 CGTATGCCTAGGTTGCCAATT 58.702 47.619 11.31 0.00 0.00 2.32
214 215 1.967319 CGTATGCCTAGGTTGCCAAT 58.033 50.000 11.31 0.00 0.00 3.16
215 216 0.746563 GCGTATGCCTAGGTTGCCAA 60.747 55.000 11.31 0.00 33.98 4.52
216 217 1.153249 GCGTATGCCTAGGTTGCCA 60.153 57.895 11.31 0.00 33.98 4.92
217 218 2.244651 CGCGTATGCCTAGGTTGCC 61.245 63.158 11.31 0.00 38.08 4.52
218 219 0.249155 TACGCGTATGCCTAGGTTGC 60.249 55.000 16.41 6.70 38.08 4.17
219 220 1.602165 CCTACGCGTATGCCTAGGTTG 60.602 57.143 20.91 3.59 41.95 3.77
220 221 0.672342 CCTACGCGTATGCCTAGGTT 59.328 55.000 20.91 0.80 41.95 3.50
221 222 0.179009 TCCTACGCGTATGCCTAGGT 60.179 55.000 20.91 10.15 45.08 3.08
222 223 0.240411 GTCCTACGCGTATGCCTAGG 59.760 60.000 20.91 18.03 45.76 3.02
223 224 1.236628 AGTCCTACGCGTATGCCTAG 58.763 55.000 20.91 8.56 38.08 3.02
224 225 1.335810 CAAGTCCTACGCGTATGCCTA 59.664 52.381 20.91 0.00 38.08 3.93
225 226 0.102481 CAAGTCCTACGCGTATGCCT 59.898 55.000 20.91 9.55 38.08 4.75
226 227 0.179119 ACAAGTCCTACGCGTATGCC 60.179 55.000 20.91 6.99 38.08 4.40
227 228 2.480224 TACAAGTCCTACGCGTATGC 57.520 50.000 20.91 12.52 37.91 3.14
228 229 4.264614 CAGTTTACAAGTCCTACGCGTATG 59.735 45.833 20.91 17.39 0.00 2.39
229 230 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
230 231 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
231 232 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
232 233 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
233 234 5.390567 CCATTTCAGTTTACAAGTCCTACGC 60.391 44.000 0.00 0.00 0.00 4.42
234 235 5.929992 TCCATTTCAGTTTACAAGTCCTACG 59.070 40.000 0.00 0.00 0.00 3.51
235 236 6.371825 CCTCCATTTCAGTTTACAAGTCCTAC 59.628 42.308 0.00 0.00 0.00 3.18
236 237 6.472887 CCTCCATTTCAGTTTACAAGTCCTA 58.527 40.000 0.00 0.00 0.00 2.94
237 238 5.316987 CCTCCATTTCAGTTTACAAGTCCT 58.683 41.667 0.00 0.00 0.00 3.85
238 239 4.459337 CCCTCCATTTCAGTTTACAAGTCC 59.541 45.833 0.00 0.00 0.00 3.85
239 240 5.313712 TCCCTCCATTTCAGTTTACAAGTC 58.686 41.667 0.00 0.00 0.00 3.01
240 241 5.163088 ACTCCCTCCATTTCAGTTTACAAGT 60.163 40.000 0.00 0.00 0.00 3.16
241 242 5.316987 ACTCCCTCCATTTCAGTTTACAAG 58.683 41.667 0.00 0.00 0.00 3.16
242 243 5.319043 ACTCCCTCCATTTCAGTTTACAA 57.681 39.130 0.00 0.00 0.00 2.41
243 244 4.993705 ACTCCCTCCATTTCAGTTTACA 57.006 40.909 0.00 0.00 0.00 2.41
244 245 4.876679 GCTACTCCCTCCATTTCAGTTTAC 59.123 45.833 0.00 0.00 0.00 2.01
245 246 4.783227 AGCTACTCCCTCCATTTCAGTTTA 59.217 41.667 0.00 0.00 0.00 2.01
246 247 3.589288 AGCTACTCCCTCCATTTCAGTTT 59.411 43.478 0.00 0.00 0.00 2.66
247 248 3.185455 AGCTACTCCCTCCATTTCAGTT 58.815 45.455 0.00 0.00 0.00 3.16
248 249 2.839228 AGCTACTCCCTCCATTTCAGT 58.161 47.619 0.00 0.00 0.00 3.41
249 250 3.198635 TCAAGCTACTCCCTCCATTTCAG 59.801 47.826 0.00 0.00 0.00 3.02
250 251 3.181329 TCAAGCTACTCCCTCCATTTCA 58.819 45.455 0.00 0.00 0.00 2.69
251 252 3.914426 TCAAGCTACTCCCTCCATTTC 57.086 47.619 0.00 0.00 0.00 2.17
252 253 4.228210 TCAATCAAGCTACTCCCTCCATTT 59.772 41.667 0.00 0.00 0.00 2.32
253 254 3.782523 TCAATCAAGCTACTCCCTCCATT 59.217 43.478 0.00 0.00 0.00 3.16
254 255 3.387962 TCAATCAAGCTACTCCCTCCAT 58.612 45.455 0.00 0.00 0.00 3.41
255 256 2.768527 CTCAATCAAGCTACTCCCTCCA 59.231 50.000 0.00 0.00 0.00 3.86
256 257 2.769095 ACTCAATCAAGCTACTCCCTCC 59.231 50.000 0.00 0.00 0.00 4.30
257 258 3.449018 TGACTCAATCAAGCTACTCCCTC 59.551 47.826 0.00 0.00 33.02 4.30
258 259 3.196685 GTGACTCAATCAAGCTACTCCCT 59.803 47.826 0.00 0.00 39.72 4.20
259 260 3.526534 GTGACTCAATCAAGCTACTCCC 58.473 50.000 0.00 0.00 39.72 4.30
260 261 3.196685 AGGTGACTCAATCAAGCTACTCC 59.803 47.826 0.00 0.00 39.72 3.85
261 262 4.464069 AGGTGACTCAATCAAGCTACTC 57.536 45.455 0.00 0.00 39.72 2.59
262 263 5.265191 TCTAGGTGACTCAATCAAGCTACT 58.735 41.667 0.00 0.00 43.67 2.57
263 264 5.584253 TCTAGGTGACTCAATCAAGCTAC 57.416 43.478 0.00 0.00 43.67 3.58
264 265 5.658634 ACATCTAGGTGACTCAATCAAGCTA 59.341 40.000 10.76 0.00 43.67 3.32
265 266 4.469227 ACATCTAGGTGACTCAATCAAGCT 59.531 41.667 10.76 0.00 43.67 3.74
266 267 4.569966 CACATCTAGGTGACTCAATCAAGC 59.430 45.833 10.76 0.00 43.67 4.01
267 268 4.569966 GCACATCTAGGTGACTCAATCAAG 59.430 45.833 10.76 0.00 43.67 3.02
268 269 4.020307 TGCACATCTAGGTGACTCAATCAA 60.020 41.667 10.76 0.00 43.67 2.57
269 270 3.515104 TGCACATCTAGGTGACTCAATCA 59.485 43.478 10.76 0.00 43.67 2.57
270 271 4.128925 TGCACATCTAGGTGACTCAATC 57.871 45.455 10.76 0.00 43.67 2.67
271 272 4.558226 TTGCACATCTAGGTGACTCAAT 57.442 40.909 10.76 0.00 43.67 2.57
272 273 4.558226 ATTGCACATCTAGGTGACTCAA 57.442 40.909 10.76 10.36 43.67 3.02
273 274 5.675684 TTATTGCACATCTAGGTGACTCA 57.324 39.130 10.76 1.32 43.67 3.41
274 275 7.412853 CAAATTATTGCACATCTAGGTGACTC 58.587 38.462 10.76 0.00 43.67 3.36
275 276 6.319658 CCAAATTATTGCACATCTAGGTGACT 59.680 38.462 10.76 0.00 40.52 3.41
276 277 6.460123 CCCAAATTATTGCACATCTAGGTGAC 60.460 42.308 10.76 1.74 40.52 3.67
277 278 5.593909 CCCAAATTATTGCACATCTAGGTGA 59.406 40.000 10.76 0.00 40.52 4.02
278 279 5.737063 GCCCAAATTATTGCACATCTAGGTG 60.737 44.000 0.04 0.04 41.72 4.00
279 280 4.342092 GCCCAAATTATTGCACATCTAGGT 59.658 41.667 0.00 0.00 35.10 3.08
280 281 4.341806 TGCCCAAATTATTGCACATCTAGG 59.658 41.667 0.00 0.00 35.10 3.02
281 282 5.518848 TGCCCAAATTATTGCACATCTAG 57.481 39.130 0.00 0.00 35.10 2.43
288 289 5.199723 TCTAGATGTGCCCAAATTATTGCA 58.800 37.500 0.00 0.00 35.10 4.08
289 290 5.772825 TCTAGATGTGCCCAAATTATTGC 57.227 39.130 0.00 0.00 35.10 3.56
304 305 4.022416 GTCTGTCTAGGGCACATCTAGATG 60.022 50.000 27.63 27.63 43.25 2.90
305 306 4.141041 AGTCTGTCTAGGGCACATCTAGAT 60.141 45.833 0.00 0.00 43.25 1.98
306 307 3.203263 AGTCTGTCTAGGGCACATCTAGA 59.797 47.826 0.00 0.00 40.38 2.43
307 308 3.561143 AGTCTGTCTAGGGCACATCTAG 58.439 50.000 0.00 0.00 36.46 2.43
308 309 3.671740 AGTCTGTCTAGGGCACATCTA 57.328 47.619 0.00 0.00 0.00 1.98
309 310 2.541233 AGTCTGTCTAGGGCACATCT 57.459 50.000 0.00 0.00 0.00 2.90
310 311 3.181474 GGTTAGTCTGTCTAGGGCACATC 60.181 52.174 0.00 0.00 0.00 3.06
311 312 2.766828 GGTTAGTCTGTCTAGGGCACAT 59.233 50.000 0.00 0.00 0.00 3.21
312 313 2.176889 GGTTAGTCTGTCTAGGGCACA 58.823 52.381 0.00 0.00 0.00 4.57
313 314 2.176889 TGGTTAGTCTGTCTAGGGCAC 58.823 52.381 0.00 0.00 0.00 5.01
314 315 2.615986 TGGTTAGTCTGTCTAGGGCA 57.384 50.000 0.00 0.00 0.00 5.36
315 316 3.031736 TGATGGTTAGTCTGTCTAGGGC 58.968 50.000 0.00 0.00 0.00 5.19
316 317 3.385111 GGTGATGGTTAGTCTGTCTAGGG 59.615 52.174 0.00 0.00 0.00 3.53
317 318 4.282496 AGGTGATGGTTAGTCTGTCTAGG 58.718 47.826 0.00 0.00 0.00 3.02
318 319 5.923733 AAGGTGATGGTTAGTCTGTCTAG 57.076 43.478 0.00 0.00 0.00 2.43
319 320 6.269077 TGAAAAGGTGATGGTTAGTCTGTCTA 59.731 38.462 0.00 0.00 0.00 2.59
320 321 5.071788 TGAAAAGGTGATGGTTAGTCTGTCT 59.928 40.000 0.00 0.00 0.00 3.41
321 322 5.305585 TGAAAAGGTGATGGTTAGTCTGTC 58.694 41.667 0.00 0.00 0.00 3.51
322 323 5.304686 TGAAAAGGTGATGGTTAGTCTGT 57.695 39.130 0.00 0.00 0.00 3.41
323 324 6.246420 CTTGAAAAGGTGATGGTTAGTCTG 57.754 41.667 0.00 0.00 41.27 3.51
346 347 2.031870 GTGATGGTTAAAGGGGCATCC 58.968 52.381 0.00 0.00 0.00 3.51
347 348 3.018423 AGTGATGGTTAAAGGGGCATC 57.982 47.619 0.00 0.00 0.00 3.91
348 349 3.245586 TGAAGTGATGGTTAAAGGGGCAT 60.246 43.478 0.00 0.00 0.00 4.40
349 350 2.109128 TGAAGTGATGGTTAAAGGGGCA 59.891 45.455 0.00 0.00 0.00 5.36
350 351 2.802719 TGAAGTGATGGTTAAAGGGGC 58.197 47.619 0.00 0.00 0.00 5.80
351 352 8.940397 ATATTATGAAGTGATGGTTAAAGGGG 57.060 34.615 0.00 0.00 0.00 4.79
360 361 9.169592 TGCATGTCATATATTATGAAGTGATGG 57.830 33.333 11.52 0.00 0.00 3.51
407 408 8.504005 TCAGAAACTCCTTTCAAATACGAATTC 58.496 33.333 0.00 0.00 38.67 2.17
462 568 4.248691 TGCTGACCATCGATAAGATCAG 57.751 45.455 16.96 16.96 37.52 2.90
481 587 5.769967 AATGCGTATTTCGAGATCTATGC 57.230 39.130 0.00 0.00 42.86 3.14
490 596 4.965762 CGTAGTGTCTAATGCGTATTTCGA 59.034 41.667 3.47 0.00 42.86 3.71
513 619 1.682087 GCCCCCTCTGTGTCCATAAAC 60.682 57.143 0.00 0.00 0.00 2.01
524 630 2.220653 TCAAAAGATTGCCCCCTCTG 57.779 50.000 0.00 0.00 36.45 3.35
528 634 4.503910 GTGTTTATCAAAAGATTGCCCCC 58.496 43.478 0.00 0.00 36.45 5.40
595 701 4.082081 TGCTTTGCATCCAATCTTTCGAAT 60.082 37.500 0.00 0.00 31.71 3.34
613 724 1.642762 AGATCACCCCTTCCATGCTTT 59.357 47.619 0.00 0.00 0.00 3.51
618 729 2.357569 GCAAAGAGATCACCCCTTCCAT 60.358 50.000 0.00 0.00 0.00 3.41
619 730 1.004745 GCAAAGAGATCACCCCTTCCA 59.995 52.381 0.00 0.00 0.00 3.53
638 752 4.785453 CAGGGGAGCGGTTGGAGC 62.785 72.222 0.00 0.00 0.00 4.70
653 767 0.039165 GGCGTTTCTTCCTTTGGCAG 60.039 55.000 0.00 0.00 0.00 4.85
654 768 0.467290 AGGCGTTTCTTCCTTTGGCA 60.467 50.000 0.00 0.00 0.00 4.92
661 775 0.107165 ATGGCCTAGGCGTTTCTTCC 60.107 55.000 27.24 11.34 43.06 3.46
662 776 1.300481 GATGGCCTAGGCGTTTCTTC 58.700 55.000 27.24 15.99 43.06 2.87
675 789 0.166814 GCTTCGCGATAATGATGGCC 59.833 55.000 10.88 0.00 33.47 5.36
819 963 4.573201 TCGCGGGGTTAAAAGATAGATTTG 59.427 41.667 6.13 0.00 0.00 2.32
821 965 4.141779 ACTCGCGGGGTTAAAAGATAGATT 60.142 41.667 12.42 0.00 0.00 2.40
822 966 3.387050 ACTCGCGGGGTTAAAAGATAGAT 59.613 43.478 12.42 0.00 0.00 1.98
823 967 2.762327 ACTCGCGGGGTTAAAAGATAGA 59.238 45.455 12.42 0.00 0.00 1.98
872 1020 4.668118 GACGCGGACGGGGAAACA 62.668 66.667 12.47 0.00 46.04 2.83
930 1109 2.972505 CGCACCCACTTCGCAGTT 60.973 61.111 0.00 0.00 0.00 3.16
936 1115 2.332654 AATTCCGCGCACCCACTTC 61.333 57.895 8.75 0.00 0.00 3.01
995 1174 3.869065 TCGTGGTTTTAATAGGAGCCTG 58.131 45.455 0.00 0.00 0.00 4.85
1065 1283 1.815757 TATGTTAAGGAGGAGGGGGC 58.184 55.000 0.00 0.00 0.00 5.80
1158 1393 3.839432 GGGGGAAGACGCGAGAGG 61.839 72.222 15.93 0.00 0.00 3.69
1166 1401 2.360475 GCTGCAGTGGGGGAAGAC 60.360 66.667 16.64 0.00 0.00 3.01
1173 1417 2.281070 ACGAACAGCTGCAGTGGG 60.281 61.111 15.27 7.70 0.00 4.61
1200 1444 1.134280 AGCCATGAGATCACCCGAAAG 60.134 52.381 0.00 0.00 0.00 2.62
1281 1525 1.895231 CTGCTGGTGTTGCTGCTGA 60.895 57.895 0.00 0.00 0.00 4.26
1282 1526 2.643272 CTGCTGGTGTTGCTGCTG 59.357 61.111 0.00 0.00 0.00 4.41
1283 1527 3.292936 GCTGCTGGTGTTGCTGCT 61.293 61.111 0.00 0.00 46.79 4.24
1285 1529 1.211969 GATGCTGCTGGTGTTGCTG 59.788 57.895 0.00 0.00 0.00 4.41
1286 1530 1.975407 GGATGCTGCTGGTGTTGCT 60.975 57.895 0.00 0.00 0.00 3.91
1287 1531 2.570181 GGATGCTGCTGGTGTTGC 59.430 61.111 0.00 0.00 0.00 4.17
1288 1532 2.872557 CGGATGCTGCTGGTGTTG 59.127 61.111 0.00 0.00 0.00 3.33
1289 1533 3.058160 GCGGATGCTGCTGGTGTT 61.058 61.111 0.00 0.00 38.39 3.32
1290 1534 4.334118 TGCGGATGCTGCTGGTGT 62.334 61.111 0.00 0.00 43.34 4.16
1291 1535 3.506096 CTGCGGATGCTGCTGGTG 61.506 66.667 0.00 0.00 43.34 4.17
1379 1642 1.082561 CAATCAATCGGCGGCATCG 60.083 57.895 10.53 0.00 39.81 3.84
1609 1880 3.461982 GACACGCGCGTCACAGAG 61.462 66.667 35.61 23.16 35.88 3.35
1610 1881 4.994201 GGACACGCGCGTCACAGA 62.994 66.667 35.61 0.00 37.66 3.41
1837 2108 1.597027 ACGTGAGGCCAAGAAACGG 60.597 57.895 5.01 0.00 38.52 4.44
1864 2135 1.143183 GCTCGCCCTGGTCGATAAA 59.857 57.895 0.00 0.00 35.25 1.40
1870 2141 4.828925 GAGCTGCTCGCCCTGGTC 62.829 72.222 14.68 0.00 40.39 4.02
2196 2467 2.711924 CGAGGGTCTACGTACGCC 59.288 66.667 16.72 8.21 33.02 5.68
2282 2553 0.743701 GCACAGGCTCAGATGTCTGG 60.744 60.000 9.94 2.83 43.91 3.86
2338 2609 2.516930 GCATACAGGGCACGCCAT 60.517 61.111 10.83 0.00 37.98 4.40
2349 2620 0.251634 TCCTCACGCAATGGCATACA 59.748 50.000 0.00 0.00 41.24 2.29
2471 2759 9.768215 TCCATTTTAGGACTATTTTTCCATTCT 57.232 29.630 0.00 0.00 35.33 2.40
2633 2925 2.644992 CTTTGCACTTGACGGGCC 59.355 61.111 0.00 0.00 0.00 5.80
2655 2973 2.526304 TACCAGCAGTAATGATCGGC 57.474 50.000 0.00 0.00 0.00 5.54
2711 3039 3.987868 TCGTCATTTCGGTTTGAAGAGAG 59.012 43.478 0.00 0.00 37.99 3.20
2850 3179 2.576847 GCTTTGCGCGGGATTTCG 60.577 61.111 8.83 0.00 0.00 3.46
2934 3279 1.641677 CCGAAACGGCCGAATCATC 59.358 57.895 35.90 19.48 41.17 2.92
2989 3334 0.035439 ACATAACAGCCAACCGAGGG 60.035 55.000 0.00 0.00 0.00 4.30
3007 3352 4.671766 CGCCTGCCTGTAATGTAAAGAAAC 60.672 45.833 0.00 0.00 0.00 2.78
3029 3374 2.492090 CTCTCCACTCTTCGCCCG 59.508 66.667 0.00 0.00 0.00 6.13
3317 3686 1.740285 CATAACGGACGGGGAGGAG 59.260 63.158 0.00 0.00 0.00 3.69
3318 3687 1.759299 CCATAACGGACGGGGAGGA 60.759 63.158 0.00 0.00 36.56 3.71
3320 3689 2.108362 GCCATAACGGACGGGGAG 59.892 66.667 0.00 0.00 36.56 4.30
3321 3690 3.472726 GGCCATAACGGACGGGGA 61.473 66.667 0.00 0.00 36.56 4.81
3367 3736 1.960250 CGGTAAACAAACGGCCGGA 60.960 57.895 31.76 1.90 38.86 5.14
3368 3737 2.557298 CGGTAAACAAACGGCCGG 59.443 61.111 31.76 14.78 38.86 6.13
3369 3738 2.127156 GCGGTAAACAAACGGCCG 60.127 61.111 26.86 26.86 44.60 6.13
3402 3774 1.713597 GGCGATGGCTTTCCTTTTTG 58.286 50.000 0.00 0.00 39.81 2.44
3423 3800 0.389166 GAAGATCGCCGGGATAGCAG 60.389 60.000 2.18 0.00 34.82 4.24
3457 3834 2.033675 GGGGTTCACCGTAAAACAACAG 59.966 50.000 0.00 0.00 41.60 3.16
3472 3849 4.413565 TAAAGCGGGCGGGGGTTC 62.414 66.667 0.00 0.00 0.00 3.62
3496 3873 2.038269 TTCGTTGGCCTCCAATCGC 61.038 57.895 3.32 0.00 45.80 4.58
3507 3884 1.689959 GCATCAGCTTTGTTCGTTGG 58.310 50.000 0.00 0.00 37.91 3.77
3508 3885 1.321016 CGCATCAGCTTTGTTCGTTG 58.679 50.000 0.00 0.00 39.10 4.10
3568 3954 5.007034 ACATTACAATCACAAACCCGATCA 58.993 37.500 0.00 0.00 0.00 2.92
3569 3955 5.560966 ACATTACAATCACAAACCCGATC 57.439 39.130 0.00 0.00 0.00 3.69
3570 3956 7.175990 ACTTTACATTACAATCACAAACCCGAT 59.824 33.333 0.00 0.00 0.00 4.18
3571 3957 6.487331 ACTTTACATTACAATCACAAACCCGA 59.513 34.615 0.00 0.00 0.00 5.14
3572 3958 6.580791 CACTTTACATTACAATCACAAACCCG 59.419 38.462 0.00 0.00 0.00 5.28
3573 3959 7.653647 TCACTTTACATTACAATCACAAACCC 58.346 34.615 0.00 0.00 0.00 4.11
3574 3960 9.180678 CTTCACTTTACATTACAATCACAAACC 57.819 33.333 0.00 0.00 0.00 3.27
3575 3961 9.730420 ACTTCACTTTACATTACAATCACAAAC 57.270 29.630 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.