Multiple sequence alignment - TraesCS6A01G261000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G261000 chr6A 100.000 6941 0 0 1 6941 484560070 484567010 0.000000e+00 12818.0
1 TraesCS6A01G261000 chr6A 98.246 114 1 1 6764 6876 250206126 250206013 1.530000e-46 198.0
2 TraesCS6A01G261000 chr6A 95.122 123 5 1 6769 6891 14134071 14133950 7.100000e-45 193.0
3 TraesCS6A01G261000 chr6A 92.727 55 2 2 6719 6772 27342928 27342981 2.080000e-10 78.7
4 TraesCS6A01G261000 chr6A 92.683 41 3 0 3242 3282 452614435 452614475 7.520000e-05 60.2
5 TraesCS6A01G261000 chr6D 95.560 2320 73 10 3203 5516 344172515 344174810 0.000000e+00 3687.0
6 TraesCS6A01G261000 chr6D 93.430 1857 65 19 1364 3215 344170672 344172476 0.000000e+00 2700.0
7 TraesCS6A01G261000 chr6D 95.147 1154 44 4 5576 6726 344174808 344175952 0.000000e+00 1810.0
8 TraesCS6A01G261000 chr6D 91.577 926 44 16 445 1367 344169697 344170591 0.000000e+00 1247.0
9 TraesCS6A01G261000 chr6D 92.193 269 16 5 135 401 344158053 344158318 6.570000e-100 375.0
10 TraesCS6A01G261000 chr6D 98.246 114 2 0 6762 6875 468641006 468640893 4.250000e-47 200.0
11 TraesCS6A01G261000 chr6D 92.593 135 8 2 6537 6669 303059852 303059986 7.100000e-45 193.0
12 TraesCS6A01G261000 chr6D 100.000 47 0 0 6895 6941 344176051 344176097 3.450000e-13 87.9
13 TraesCS6A01G261000 chr6D 92.683 41 3 0 3242 3282 315563983 315564023 7.520000e-05 60.2
14 TraesCS6A01G261000 chr6B 96.636 2170 63 2 3344 5513 519399683 519401842 0.000000e+00 3594.0
15 TraesCS6A01G261000 chr6B 94.083 1859 70 19 1364 3215 519397680 519399505 0.000000e+00 2787.0
16 TraesCS6A01G261000 chr6B 94.641 1157 53 5 5577 6726 519401844 519402998 0.000000e+00 1784.0
17 TraesCS6A01G261000 chr6B 90.692 795 36 16 574 1367 519396843 519397600 0.000000e+00 1024.0
18 TraesCS6A01G261000 chr6B 89.278 457 24 10 124 577 519396250 519396684 3.660000e-152 549.0
19 TraesCS6A01G261000 chr6B 96.104 77 3 0 5507 5583 481696409 481696485 7.310000e-25 126.0
20 TraesCS6A01G261000 chr6B 97.297 74 1 1 5510 5583 270366132 270366060 2.630000e-24 124.0
21 TraesCS6A01G261000 chr5B 90.977 1330 96 15 1841 3165 27378141 27379451 0.000000e+00 1770.0
22 TraesCS6A01G261000 chr5B 90.806 1327 99 11 1847 3166 27403938 27405248 0.000000e+00 1753.0
23 TraesCS6A01G261000 chr5B 96.154 78 3 0 5506 5583 307068598 307068675 2.030000e-25 128.0
24 TraesCS6A01G261000 chr3B 92.575 633 38 7 2536 3166 608259197 608259822 0.000000e+00 900.0
25 TraesCS6A01G261000 chr3B 97.391 115 3 0 6762 6876 15806511 15806625 5.490000e-46 196.0
26 TraesCS6A01G261000 chr3B 81.111 90 10 5 3202 3285 678148011 678147923 1.620000e-06 65.8
27 TraesCS6A01G261000 chr7D 92.417 633 38 8 2536 3166 232339081 232339705 0.000000e+00 894.0
28 TraesCS6A01G261000 chr7D 100.000 71 0 0 5513 5583 252265193 252265263 1.570000e-26 132.0
29 TraesCS6A01G261000 chrUn 96.774 403 13 0 3400 3802 477117597 477117195 0.000000e+00 673.0
30 TraesCS6A01G261000 chrUn 100.000 71 0 0 5513 5583 62690469 62690539 1.570000e-26 132.0
31 TraesCS6A01G261000 chrUn 95.122 82 2 2 5503 5583 224653404 224653324 2.030000e-25 128.0
32 TraesCS6A01G261000 chrUn 92.727 55 2 2 6719 6772 94847023 94846970 2.080000e-10 78.7
33 TraesCS6A01G261000 chr4A 99.115 113 1 0 6763 6875 593739018 593739130 3.280000e-48 204.0
34 TraesCS6A01G261000 chr4A 94.545 55 1 2 6719 6772 724508346 724508399 4.460000e-12 84.2
35 TraesCS6A01G261000 chr4A 92.727 55 2 2 6719 6772 712733761 712733708 2.080000e-10 78.7
36 TraesCS6A01G261000 chr7A 99.107 112 1 0 6766 6877 269960429 269960318 1.180000e-47 202.0
37 TraesCS6A01G261000 chr7A 98.230 113 2 0 6764 6876 133053340 133053228 1.530000e-46 198.0
38 TraesCS6A01G261000 chr7A 86.364 176 17 6 6538 6707 20051543 20051717 1.190000e-42 185.0
39 TraesCS6A01G261000 chr7A 97.059 34 1 0 3242 3275 49652929 49652896 2.700000e-04 58.4
40 TraesCS6A01G261000 chr7A 97.059 34 1 0 3242 3275 709894613 709894646 2.700000e-04 58.4
41 TraesCS6A01G261000 chr3A 93.893 131 7 1 6745 6875 333306277 333306148 5.490000e-46 196.0
42 TraesCS6A01G261000 chr3A 88.312 154 15 3 6535 6685 603266530 603266377 1.540000e-41 182.0
43 TraesCS6A01G261000 chr2D 98.214 112 2 0 6765 6876 87031087 87030976 5.490000e-46 196.0
44 TraesCS6A01G261000 chr2D 92.727 55 2 2 6719 6772 422331606 422331553 2.080000e-10 78.7
45 TraesCS6A01G261000 chr2D 94.118 34 2 0 3242 3275 116648928 116648961 1.300000e-02 52.8
46 TraesCS6A01G261000 chr4D 93.233 133 6 3 6535 6664 74079347 74079479 7.100000e-45 193.0
47 TraesCS6A01G261000 chr1A 91.912 136 10 1 6533 6667 395177606 395177471 9.190000e-44 189.0
48 TraesCS6A01G261000 chr1A 89.583 48 1 4 3230 3275 581571214 581571169 2.700000e-04 58.4
49 TraesCS6A01G261000 chr5A 89.655 145 13 2 6538 6680 382069964 382070108 4.280000e-42 183.0
50 TraesCS6A01G261000 chr1B 87.342 158 15 4 6538 6690 667230626 667230469 7.160000e-40 176.0
51 TraesCS6A01G261000 chr2B 98.684 76 1 0 5508 5583 478114466 478114391 1.210000e-27 135.0
52 TraesCS6A01G261000 chr2B 97.436 78 2 0 5506 5583 546976374 546976451 4.370000e-27 134.0
53 TraesCS6A01G261000 chr5D 96.154 78 3 0 5506 5583 504792923 504793000 2.030000e-25 128.0
54 TraesCS6A01G261000 chr7B 87.671 73 5 3 3203 3275 575970568 575970500 1.600000e-11 82.4
55 TraesCS6A01G261000 chr7B 94.340 53 1 2 6719 6770 598012063 598012114 5.770000e-11 80.5
56 TraesCS6A01G261000 chr7B 92.727 55 2 2 6719 6772 66196654 66196707 2.080000e-10 78.7
57 TraesCS6A01G261000 chr7B 92.727 55 2 2 6719 6772 462238712 462238659 2.080000e-10 78.7
58 TraesCS6A01G261000 chr2A 95.918 49 0 2 6724 6772 540989983 540989937 2.080000e-10 78.7
59 TraesCS6A01G261000 chr4B 84.416 77 8 2 3199 3275 424746533 424746605 9.660000e-09 73.1
60 TraesCS6A01G261000 chr1D 92.857 42 3 0 3242 3283 467523578 467523619 2.090000e-05 62.1
61 TraesCS6A01G261000 chr1D 100.000 28 0 0 3248 3275 351109328 351109301 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G261000 chr6A 484560070 484567010 6940 False 12818.00 12818 100.0000 1 6941 1 chr6A.!!$F3 6940
1 TraesCS6A01G261000 chr6D 344169697 344176097 6400 False 1906.38 3687 95.1428 445 6941 5 chr6D.!!$F4 6496
2 TraesCS6A01G261000 chr6B 519396250 519402998 6748 False 1947.60 3594 93.0660 124 6726 5 chr6B.!!$F2 6602
3 TraesCS6A01G261000 chr5B 27378141 27379451 1310 False 1770.00 1770 90.9770 1841 3165 1 chr5B.!!$F1 1324
4 TraesCS6A01G261000 chr5B 27403938 27405248 1310 False 1753.00 1753 90.8060 1847 3166 1 chr5B.!!$F2 1319
5 TraesCS6A01G261000 chr3B 608259197 608259822 625 False 900.00 900 92.5750 2536 3166 1 chr3B.!!$F2 630
6 TraesCS6A01G261000 chr7D 232339081 232339705 624 False 894.00 894 92.4170 2536 3166 1 chr7D.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.107263 TTCTGCGCTAATCCATGGCA 60.107 50.0 9.73 0.00 0.00 4.92 F
531 534 0.381801 GCCGCATGGTAAATGGAGTG 59.618 55.0 0.00 0.00 37.67 3.51 F
1223 1392 0.248990 TTGCTGCTGTTTTTGGCGAG 60.249 50.0 0.00 0.00 0.00 5.03 F
2291 2545 0.749454 GGCCTGTCACAATAGCCCAG 60.749 60.0 0.00 0.00 37.66 4.45 F
4214 4571 0.184692 TGGTGTTCTTGGACATGGCA 59.815 50.0 0.00 0.00 0.00 4.92 F
4443 4800 0.249489 ACTTGTGTCGAGCCACTCAC 60.249 55.0 7.57 1.67 36.30 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1164 1333 0.462047 CCGTCTATGCCAACAGGGAC 60.462 60.0 0.00 0.00 40.01 4.46 R
1461 1713 0.678048 AGATGGGCGCCTTTCTTGAC 60.678 55.0 28.56 7.32 0.00 3.18 R
2621 2880 0.460311 AAAGGCGGTGATACGAGGAG 59.540 55.0 0.00 0.00 35.47 3.69 R
4264 4621 0.178953 ATGCCACAGCCTTGGTTCTT 60.179 50.0 3.24 0.00 39.09 2.52 R
5217 5574 0.761802 CTCTACTTGCCCCCATCTCC 59.238 60.0 0.00 0.00 0.00 3.71 R
6390 6754 0.321210 TCTCGCCAAAATGCTTCCGA 60.321 50.0 0.00 0.00 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.782656 AACATTTTACCGGAGAGTGGT 57.217 42.857 9.46 0.00 43.62 4.16
21 22 3.782656 ACATTTTACCGGAGAGTGGTT 57.217 42.857 9.46 0.00 40.96 3.67
22 23 3.671716 ACATTTTACCGGAGAGTGGTTC 58.328 45.455 9.46 0.00 40.96 3.62
23 24 2.845363 TTTTACCGGAGAGTGGTTCC 57.155 50.000 9.46 0.00 40.96 3.62
24 25 0.978907 TTTACCGGAGAGTGGTTCCC 59.021 55.000 9.46 0.00 40.96 3.97
25 26 0.115745 TTACCGGAGAGTGGTTCCCT 59.884 55.000 9.46 0.00 40.96 4.20
26 27 0.115745 TACCGGAGAGTGGTTCCCTT 59.884 55.000 9.46 0.00 40.96 3.95
27 28 0.767060 ACCGGAGAGTGGTTCCCTTT 60.767 55.000 9.46 0.00 35.82 3.11
28 29 0.400594 CCGGAGAGTGGTTCCCTTTT 59.599 55.000 0.00 0.00 0.00 2.27
29 30 1.610886 CCGGAGAGTGGTTCCCTTTTC 60.611 57.143 0.00 0.00 0.00 2.29
30 31 1.809684 GGAGAGTGGTTCCCTTTTCG 58.190 55.000 0.00 0.00 0.00 3.46
31 32 1.610886 GGAGAGTGGTTCCCTTTTCGG 60.611 57.143 0.00 0.00 0.00 4.30
32 33 1.346722 GAGAGTGGTTCCCTTTTCGGA 59.653 52.381 0.00 0.00 33.16 4.55
33 34 1.071857 AGAGTGGTTCCCTTTTCGGAC 59.928 52.381 0.00 0.00 33.16 4.79
34 35 0.109913 AGTGGTTCCCTTTTCGGACC 59.890 55.000 0.00 0.00 33.16 4.46
35 36 0.109913 GTGGTTCCCTTTTCGGACCT 59.890 55.000 0.00 0.00 33.16 3.85
36 37 0.848053 TGGTTCCCTTTTCGGACCTT 59.152 50.000 0.00 0.00 33.16 3.50
37 38 1.215924 TGGTTCCCTTTTCGGACCTTT 59.784 47.619 0.00 0.00 33.16 3.11
38 39 1.611977 GGTTCCCTTTTCGGACCTTTG 59.388 52.381 0.00 0.00 33.16 2.77
39 40 2.304092 GTTCCCTTTTCGGACCTTTGT 58.696 47.619 0.00 0.00 33.16 2.83
40 41 2.691526 GTTCCCTTTTCGGACCTTTGTT 59.308 45.455 0.00 0.00 33.16 2.83
41 42 2.303175 TCCCTTTTCGGACCTTTGTTG 58.697 47.619 0.00 0.00 33.16 3.33
42 43 2.028876 CCCTTTTCGGACCTTTGTTGT 58.971 47.619 0.00 0.00 33.16 3.32
43 44 2.034179 CCCTTTTCGGACCTTTGTTGTC 59.966 50.000 0.00 0.00 33.16 3.18
57 58 9.406828 GACCTTTGTTGTCCTGAAATATTTTAC 57.593 33.333 1.43 0.44 0.00 2.01
58 59 8.919145 ACCTTTGTTGTCCTGAAATATTTTACA 58.081 29.630 1.43 2.90 0.00 2.41
59 60 9.757227 CCTTTGTTGTCCTGAAATATTTTACAA 57.243 29.630 1.43 8.28 0.00 2.41
93 94 9.958180 TGTTCTTGTCCTTATTTAATGAGATGA 57.042 29.630 0.00 0.00 0.00 2.92
95 96 9.618890 TTCTTGTCCTTATTTAATGAGATGAGG 57.381 33.333 0.00 0.00 32.03 3.86
96 97 7.716998 TCTTGTCCTTATTTAATGAGATGAGGC 59.283 37.037 0.00 0.00 31.13 4.70
97 98 6.899089 TGTCCTTATTTAATGAGATGAGGCA 58.101 36.000 0.00 0.00 31.13 4.75
98 99 6.994496 TGTCCTTATTTAATGAGATGAGGCAG 59.006 38.462 0.00 0.00 31.13 4.85
99 100 7.147497 TGTCCTTATTTAATGAGATGAGGCAGA 60.147 37.037 0.00 0.00 31.13 4.26
100 101 7.716998 GTCCTTATTTAATGAGATGAGGCAGAA 59.283 37.037 0.00 0.00 31.13 3.02
101 102 7.716998 TCCTTATTTAATGAGATGAGGCAGAAC 59.283 37.037 0.00 0.00 31.13 3.01
102 103 7.718753 CCTTATTTAATGAGATGAGGCAGAACT 59.281 37.037 0.00 0.00 0.00 3.01
103 104 9.118300 CTTATTTAATGAGATGAGGCAGAACTT 57.882 33.333 0.00 0.00 0.00 2.66
104 105 7.951347 ATTTAATGAGATGAGGCAGAACTTT 57.049 32.000 0.00 0.00 0.00 2.66
105 106 7.765695 TTTAATGAGATGAGGCAGAACTTTT 57.234 32.000 0.00 0.00 0.00 2.27
106 107 5.640189 AATGAGATGAGGCAGAACTTTTG 57.360 39.130 0.00 0.00 0.00 2.44
107 108 2.816087 TGAGATGAGGCAGAACTTTTGC 59.184 45.455 0.00 0.00 40.80 3.68
114 115 2.492019 GCAGAACTTTTGCCTTCGTT 57.508 45.000 0.00 0.00 35.54 3.85
115 116 2.809446 GCAGAACTTTTGCCTTCGTTT 58.191 42.857 0.00 0.00 35.54 3.60
116 117 3.186909 GCAGAACTTTTGCCTTCGTTTT 58.813 40.909 0.00 0.00 35.54 2.43
117 118 4.356289 GCAGAACTTTTGCCTTCGTTTTA 58.644 39.130 0.00 0.00 35.54 1.52
118 119 4.801516 GCAGAACTTTTGCCTTCGTTTTAA 59.198 37.500 0.00 0.00 35.54 1.52
119 120 5.289917 GCAGAACTTTTGCCTTCGTTTTAAA 59.710 36.000 0.00 0.00 35.54 1.52
120 121 6.183360 GCAGAACTTTTGCCTTCGTTTTAAAA 60.183 34.615 0.00 0.00 35.54 1.52
121 122 7.622464 GCAGAACTTTTGCCTTCGTTTTAAAAA 60.622 33.333 1.31 0.00 35.54 1.94
143 144 2.489938 TAATCCAACACAGGGCTGAC 57.510 50.000 0.00 0.00 0.00 3.51
148 149 1.672356 AACACAGGGCTGACGATGC 60.672 57.895 0.00 0.00 0.00 3.91
178 179 2.922234 GGGGATGCTGAAGAGGGG 59.078 66.667 0.00 0.00 0.00 4.79
179 180 2.003548 GGGGATGCTGAAGAGGGGT 61.004 63.158 0.00 0.00 0.00 4.95
180 181 1.225704 GGGATGCTGAAGAGGGGTG 59.774 63.158 0.00 0.00 0.00 4.61
181 182 1.274703 GGGATGCTGAAGAGGGGTGA 61.275 60.000 0.00 0.00 0.00 4.02
182 183 0.842635 GGATGCTGAAGAGGGGTGAT 59.157 55.000 0.00 0.00 0.00 3.06
183 184 1.202746 GGATGCTGAAGAGGGGTGATC 60.203 57.143 0.00 0.00 0.00 2.92
184 185 1.487976 GATGCTGAAGAGGGGTGATCA 59.512 52.381 0.00 0.00 0.00 2.92
185 186 0.907486 TGCTGAAGAGGGGTGATCAG 59.093 55.000 0.00 0.00 41.69 2.90
186 187 1.198713 GCTGAAGAGGGGTGATCAGA 58.801 55.000 0.00 0.00 41.38 3.27
193 194 2.637872 AGAGGGGTGATCAGAAAAACGA 59.362 45.455 0.00 0.00 0.00 3.85
202 203 5.343325 GTGATCAGAAAAACGAAAATCAGGC 59.657 40.000 0.00 0.00 0.00 4.85
211 212 1.268234 CGAAAATCAGGCGCCAGATTC 60.268 52.381 37.48 28.34 32.27 2.52
214 215 1.099879 AATCAGGCGCCAGATTCTGC 61.100 55.000 33.96 3.79 28.12 4.26
228 229 0.107263 TTCTGCGCTAATCCATGGCA 60.107 50.000 9.73 0.00 0.00 4.92
330 332 4.514401 ACAGGAAACGGATCCAAGATTAC 58.486 43.478 13.41 1.29 42.27 1.89
338 340 3.134458 GGATCCAAGATTACGAAGCAGG 58.866 50.000 6.95 0.00 0.00 4.85
339 341 2.024176 TCCAAGATTACGAAGCAGGC 57.976 50.000 0.00 0.00 0.00 4.85
340 342 1.555075 TCCAAGATTACGAAGCAGGCT 59.445 47.619 0.00 0.00 0.00 4.58
341 343 2.764010 TCCAAGATTACGAAGCAGGCTA 59.236 45.455 0.00 0.00 0.00 3.93
342 344 2.866762 CCAAGATTACGAAGCAGGCTAC 59.133 50.000 0.00 0.00 0.00 3.58
400 403 4.999950 AGGAGAAAACAGCAACAGATGTAG 59.000 41.667 0.00 0.00 30.57 2.74
401 404 4.154918 GGAGAAAACAGCAACAGATGTAGG 59.845 45.833 0.00 0.00 30.57 3.18
402 405 3.503748 AGAAAACAGCAACAGATGTAGGC 59.496 43.478 2.32 2.32 30.57 3.93
403 406 2.566833 AACAGCAACAGATGTAGGCA 57.433 45.000 10.85 0.00 30.57 4.75
404 407 2.795231 ACAGCAACAGATGTAGGCAT 57.205 45.000 10.85 0.00 38.18 4.40
405 408 2.362736 ACAGCAACAGATGTAGGCATG 58.637 47.619 10.85 0.00 35.07 4.06
406 409 2.290514 ACAGCAACAGATGTAGGCATGT 60.291 45.455 10.85 9.17 35.07 3.21
407 410 3.055167 ACAGCAACAGATGTAGGCATGTA 60.055 43.478 10.85 0.00 35.07 2.29
408 411 3.558829 CAGCAACAGATGTAGGCATGTAG 59.441 47.826 10.85 0.00 35.07 2.74
429 432 5.291905 AGTACTACAGAAACAAACAGCCT 57.708 39.130 0.00 0.00 0.00 4.58
440 443 2.038295 ACAAACAGCCTCTTCCTCTCAG 59.962 50.000 0.00 0.00 0.00 3.35
496 499 3.143515 GCTAAAGGCCAGCCCTGC 61.144 66.667 5.01 1.13 45.62 4.85
497 500 2.440980 CTAAAGGCCAGCCCTGCC 60.441 66.667 5.01 0.62 45.62 4.85
531 534 0.381801 GCCGCATGGTAAATGGAGTG 59.618 55.000 0.00 0.00 37.67 3.51
533 536 1.382522 CGCATGGTAAATGGAGTGCT 58.617 50.000 0.00 0.00 0.00 4.40
534 537 2.560504 CGCATGGTAAATGGAGTGCTA 58.439 47.619 0.00 0.00 0.00 3.49
535 538 2.287915 CGCATGGTAAATGGAGTGCTAC 59.712 50.000 0.00 0.00 0.00 3.58
611 776 2.287248 GCTGCAACCAACAGAGAGAAAC 60.287 50.000 0.00 0.00 37.32 2.78
624 789 8.877779 CAACAGAGAGAAACGAATGAATAAGAT 58.122 33.333 0.00 0.00 0.00 2.40
625 790 9.442047 AACAGAGAGAAACGAATGAATAAGATT 57.558 29.630 0.00 0.00 0.00 2.40
665 830 2.168621 CGTGTGTCGAGCAAAGCG 59.831 61.111 0.00 0.00 42.86 4.68
744 909 2.222445 GTCATCTTTAAACACACGCGGT 59.778 45.455 12.47 2.05 0.00 5.68
745 910 2.873472 TCATCTTTAAACACACGCGGTT 59.127 40.909 12.47 1.46 0.00 4.44
844 1009 4.548513 CCTCCCTCCCTCCCTCCG 62.549 77.778 0.00 0.00 0.00 4.63
935 1100 1.527433 GCTGTTGACCAAAGGAGGCC 61.527 60.000 0.00 0.00 0.00 5.19
978 1146 2.803133 GCCAGTGCCAAGGTTTCTTTTC 60.803 50.000 0.00 0.00 0.00 2.29
989 1157 5.251182 AGGTTTCTTTTCCCCGATCTTTA 57.749 39.130 0.00 0.00 0.00 1.85
1053 1221 3.073735 AGAGGAGCCGAGCAGGTG 61.074 66.667 0.17 0.00 43.70 4.00
1164 1333 1.995991 CCACTCGTAATTCACCGCG 59.004 57.895 0.00 0.00 0.00 6.46
1173 1342 1.234615 AATTCACCGCGTCCCTGTTG 61.235 55.000 4.92 0.00 0.00 3.33
1200 1369 5.476091 AGACGGATCTGTTCTTCTTCTTT 57.524 39.130 8.99 0.00 32.29 2.52
1206 1375 7.074502 CGGATCTGTTCTTCTTCTTTTTCTTG 58.925 38.462 0.00 0.00 0.00 3.02
1223 1392 0.248990 TTGCTGCTGTTTTTGGCGAG 60.249 50.000 0.00 0.00 0.00 5.03
1289 1458 3.862267 CAGTGATCCGTTTCAGTCTCATC 59.138 47.826 0.00 0.00 0.00 2.92
1297 1466 6.639563 TCCGTTTCAGTCTCATCATATTTCA 58.360 36.000 0.00 0.00 0.00 2.69
1305 1474 5.757320 AGTCTCATCATATTTCAAAGCTCGG 59.243 40.000 0.00 0.00 0.00 4.63
1339 1508 6.035975 GGGTTGTTCATTTCACAGTTTTCTTG 59.964 38.462 0.00 0.00 0.00 3.02
1348 1517 3.152341 CACAGTTTTCTTGCCTGGATCT 58.848 45.455 0.00 0.00 0.00 2.75
1363 1532 5.284079 CCTGGATCTTTTTGTGTTCACTTG 58.716 41.667 4.59 0.00 0.00 3.16
1461 1713 1.250328 TCTTCAGGCCATTGTTGCTG 58.750 50.000 5.01 0.00 0.00 4.41
1544 1796 3.068732 TCAGGCTATCATGTGTGAGTAGC 59.931 47.826 0.00 0.00 38.87 3.58
1567 1819 6.222038 CCTCTTTGGCACTACAGAATACTA 57.778 41.667 0.00 0.00 0.00 1.82
1568 1820 6.821388 CCTCTTTGGCACTACAGAATACTAT 58.179 40.000 0.00 0.00 0.00 2.12
1735 1988 2.099098 GCTGGACGTATGGGAAATTTGG 59.901 50.000 0.00 0.00 0.00 3.28
1746 1999 7.201776 CGTATGGGAAATTTGGTCAATCATGTA 60.202 37.037 0.00 0.00 0.00 2.29
1756 2009 5.996219 TGGTCAATCATGTAAAACTCAACG 58.004 37.500 0.00 0.00 0.00 4.10
1781 2034 5.392009 GTGCAAAACATTTTTACACAATGCG 59.608 36.000 9.04 0.00 35.92 4.73
1904 2157 2.851263 ATAAGCCCACGTGAAACTCA 57.149 45.000 19.30 0.00 31.75 3.41
1905 2158 2.851263 TAAGCCCACGTGAAACTCAT 57.149 45.000 19.30 0.00 31.75 2.90
2052 2305 1.071471 CAGTCCATATGGTCCCCGC 59.929 63.158 21.28 6.40 36.34 6.13
2175 2428 7.624549 AGATAACTCCAAATGTAGCTTTCAGA 58.375 34.615 0.00 0.00 0.00 3.27
2291 2545 0.749454 GGCCTGTCACAATAGCCCAG 60.749 60.000 0.00 0.00 37.66 4.45
2318 2573 2.570442 TTGTTTTCGGTTTGCAGGAC 57.430 45.000 0.00 0.00 0.00 3.85
2381 2636 2.695147 TCTGAGCTTGAGTTCTGTGTCA 59.305 45.455 0.00 0.00 0.00 3.58
2410 2665 3.498927 TCTCGGACAGAAAACGGTATC 57.501 47.619 0.00 0.00 0.00 2.24
2424 2681 2.910977 ACGGTATCTGGTTTTCTTCCCT 59.089 45.455 0.00 0.00 0.00 4.20
2433 2690 6.192044 TCTGGTTTTCTTCCCTAAACACTTT 58.808 36.000 0.00 0.00 36.27 2.66
2503 2762 0.814457 TGCAGACAAACCTTTTGCGT 59.186 45.000 0.00 0.00 37.58 5.24
2621 2880 9.553418 GAATTCTTGAGTTTAGAATCTCTTTGC 57.447 33.333 0.00 0.00 40.51 3.68
2631 2890 5.195001 AGAATCTCTTTGCTCCTCGTATC 57.805 43.478 0.00 0.00 0.00 2.24
2862 3123 4.556942 TGCATGACACAAGAAAGTTCAG 57.443 40.909 0.00 0.00 0.00 3.02
2868 3129 2.301346 CACAAGAAAGTTCAGCCAGGT 58.699 47.619 0.00 0.00 0.00 4.00
2869 3130 2.689983 CACAAGAAAGTTCAGCCAGGTT 59.310 45.455 0.00 0.00 0.00 3.50
2870 3131 3.882888 CACAAGAAAGTTCAGCCAGGTTA 59.117 43.478 0.00 0.00 0.00 2.85
2871 3132 4.023707 CACAAGAAAGTTCAGCCAGGTTAG 60.024 45.833 0.00 0.00 0.00 2.34
2872 3133 4.141482 ACAAGAAAGTTCAGCCAGGTTAGA 60.141 41.667 0.00 0.00 0.00 2.10
2873 3134 4.917906 AGAAAGTTCAGCCAGGTTAGAT 57.082 40.909 0.00 0.00 0.00 1.98
2906 3173 7.389607 CCTATGCATGTCATGATTTCTATGTGA 59.610 37.037 17.24 0.00 36.63 3.58
2907 3174 7.761038 ATGCATGTCATGATTTCTATGTGAT 57.239 32.000 17.24 0.00 33.26 3.06
2908 3175 6.966021 TGCATGTCATGATTTCTATGTGATG 58.034 36.000 17.24 0.00 0.00 3.07
2909 3176 6.544564 TGCATGTCATGATTTCTATGTGATGT 59.455 34.615 17.24 0.00 0.00 3.06
2910 3177 6.856426 GCATGTCATGATTTCTATGTGATGTG 59.144 38.462 17.24 0.00 0.00 3.21
2951 3218 4.832248 TCAAGTATGAGTTCACCATGACC 58.168 43.478 0.00 0.00 0.00 4.02
3007 3274 8.716646 ACTTTTGGTTTTCTGTTAAAATCAGG 57.283 30.769 0.00 0.00 32.54 3.86
3009 3276 7.425224 TTTGGTTTTCTGTTAAAATCAGGGA 57.575 32.000 0.00 0.00 32.54 4.20
3011 3278 5.894393 TGGTTTTCTGTTAAAATCAGGGACA 59.106 36.000 0.00 0.00 34.15 4.02
3059 3326 7.573916 TGCGAAATTAATAACCAACATGTTG 57.426 32.000 28.18 28.18 40.13 3.33
3196 3464 5.346822 CACTTTGTGGAGCTGCATATTTTTC 59.653 40.000 12.38 0.00 0.00 2.29
3197 3465 5.010922 ACTTTGTGGAGCTGCATATTTTTCA 59.989 36.000 12.38 0.00 0.00 2.69
3198 3466 5.664294 TTGTGGAGCTGCATATTTTTCAT 57.336 34.783 12.38 0.00 0.00 2.57
3199 3467 6.772360 TTGTGGAGCTGCATATTTTTCATA 57.228 33.333 12.38 0.00 0.00 2.15
3201 3469 6.563422 TGTGGAGCTGCATATTTTTCATAAC 58.437 36.000 12.38 0.00 0.00 1.89
3217 3537 9.720769 TTTTTCATAACTACTCCCTCTGTAAAG 57.279 33.333 0.00 0.00 0.00 1.85
3228 3548 8.709272 ACTCCCTCTGTAAAGTAATATAGGAC 57.291 38.462 0.00 0.00 0.00 3.85
3229 3549 8.512813 ACTCCCTCTGTAAAGTAATATAGGACT 58.487 37.037 0.00 0.00 0.00 3.85
3291 3648 9.601217 ACTTTACAGATGCAGTACTAAATAAGG 57.399 33.333 0.00 0.00 0.00 2.69
3292 3649 9.601217 CTTTACAGATGCAGTACTAAATAAGGT 57.399 33.333 0.00 0.00 0.00 3.50
3297 3654 9.935241 CAGATGCAGTACTAAATAAGGTGATAT 57.065 33.333 0.00 0.00 0.00 1.63
3299 3656 9.929180 GATGCAGTACTAAATAAGGTGATATCA 57.071 33.333 0.00 0.00 0.00 2.15
3332 3689 8.806146 ACTTATGAAAGACTGTAAATTGCCATT 58.194 29.630 0.00 0.00 36.50 3.16
3333 3690 9.643693 CTTATGAAAGACTGTAAATTGCCATTT 57.356 29.630 0.98 0.98 34.32 2.32
3348 3705 5.429681 TGCCATTTCTTAGCCACTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
3476 3833 1.377536 GAAGAGCAGTCTGGATTGCC 58.622 55.000 13.11 6.50 43.95 4.52
3500 3857 0.539051 AGCATTCGTCTCTCCAAGGG 59.461 55.000 0.00 0.00 0.00 3.95
3517 3874 1.187087 GGGAGAGAACGTGGTCAGAT 58.813 55.000 0.00 0.00 0.00 2.90
3518 3875 1.134965 GGGAGAGAACGTGGTCAGATG 60.135 57.143 0.00 0.00 0.00 2.90
3559 3916 9.841880 GAAAGAATTACTCCTGAAATGGTAAAC 57.158 33.333 0.00 0.00 0.00 2.01
3652 4009 3.949132 ACTGAAAGCTTCTGAAGGATCC 58.051 45.455 18.38 2.48 37.60 3.36
3704 4061 1.428912 ACATCTTTGCCTGGGGAGAAA 59.571 47.619 0.00 0.00 0.00 2.52
3787 4144 2.205022 TGAAGCCAACCCAGATTCTG 57.795 50.000 6.70 6.70 0.00 3.02
3811 4168 2.738521 CAGAACGTCGCCTGTGGG 60.739 66.667 6.98 0.00 0.00 4.61
3893 4250 3.181417 TGGTGGGATATTGGGACACAAAA 60.181 43.478 0.00 0.00 43.46 2.44
4186 4543 3.623060 GTCAACTGTTCACATATGGCGAT 59.377 43.478 7.80 0.00 0.00 4.58
4214 4571 0.184692 TGGTGTTCTTGGACATGGCA 59.815 50.000 0.00 0.00 0.00 4.92
4264 4621 6.553857 AGAAGTAGAGTCTCTGAAAGGGTTA 58.446 40.000 12.92 0.00 34.47 2.85
4268 4625 7.011382 AGTAGAGTCTCTGAAAGGGTTAAGAA 58.989 38.462 12.92 0.00 34.47 2.52
4324 4681 4.342092 GCTGCCATTGTGGAAATATTAGGT 59.658 41.667 0.00 0.00 40.96 3.08
4443 4800 0.249489 ACTTGTGTCGAGCCACTCAC 60.249 55.000 7.57 1.67 36.30 3.51
4491 4848 1.355066 GCTAAGGCACTGACAGTCGC 61.355 60.000 4.74 12.57 40.86 5.19
4530 4887 4.141756 TGTTGTTTTCACCATTGGAAGCAT 60.142 37.500 10.37 0.00 31.94 3.79
4582 4939 6.466308 TTGAGTGACACATCTATTTGTTCG 57.534 37.500 8.59 0.00 0.00 3.95
4597 4954 0.250770 GTTCGGTTGAAGGGCCTCTT 60.251 55.000 6.46 4.14 38.65 2.85
4799 5156 2.432444 CCTGCGGTTCCAATTTCACTA 58.568 47.619 0.00 0.00 0.00 2.74
4876 5233 6.487103 CAGTTGTCAGTTGTCTTTTACCTTC 58.513 40.000 0.00 0.00 0.00 3.46
4981 5338 3.181329 TGGACCAGATAGGAGCAAAAGA 58.819 45.455 0.00 0.00 41.22 2.52
5104 5461 7.042051 CCAACAGAAATAAGACCATATACACCG 60.042 40.741 0.00 0.00 0.00 4.94
5110 5467 9.754382 GAAATAAGACCATATACACCGAAGTTA 57.246 33.333 0.00 0.00 0.00 2.24
5191 5548 6.874278 TCCAATCAGAGAAATCAGGACTTA 57.126 37.500 0.00 0.00 0.00 2.24
5217 5574 1.399089 ACCGGTTCAACTGAAAACACG 59.601 47.619 0.00 0.00 35.58 4.49
5341 5698 2.906389 ACAGAGAATGCCTGAACCAGTA 59.094 45.455 0.00 0.00 35.69 2.74
5518 5875 8.575649 TTTGTCCTCCTTTTAAATGATACTCC 57.424 34.615 2.77 0.00 0.00 3.85
5519 5876 6.659824 TGTCCTCCTTTTAAATGATACTCCC 58.340 40.000 2.77 0.00 0.00 4.30
5520 5877 6.447084 TGTCCTCCTTTTAAATGATACTCCCT 59.553 38.462 2.77 0.00 0.00 4.20
5521 5878 6.993308 GTCCTCCTTTTAAATGATACTCCCTC 59.007 42.308 2.77 0.00 0.00 4.30
5522 5879 6.101296 TCCTCCTTTTAAATGATACTCCCTCC 59.899 42.308 2.77 0.00 0.00 4.30
5523 5880 5.925509 TCCTTTTAAATGATACTCCCTCCG 58.074 41.667 2.77 0.00 0.00 4.63
5524 5881 5.427481 TCCTTTTAAATGATACTCCCTCCGT 59.573 40.000 2.77 0.00 0.00 4.69
5525 5882 5.758784 CCTTTTAAATGATACTCCCTCCGTC 59.241 44.000 2.77 0.00 0.00 4.79
5526 5883 4.950205 TTAAATGATACTCCCTCCGTCC 57.050 45.455 0.00 0.00 0.00 4.79
5527 5884 1.718280 AATGATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
5528 5885 0.561184 ATGATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
5529 5886 0.561184 TGATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
5530 5887 1.784593 TGATACTCCCTCCGTCCCATA 59.215 52.381 0.00 0.00 0.00 2.74
5531 5888 2.178325 TGATACTCCCTCCGTCCCATAA 59.822 50.000 0.00 0.00 0.00 1.90
5532 5889 3.181410 TGATACTCCCTCCGTCCCATAAT 60.181 47.826 0.00 0.00 0.00 1.28
5533 5890 4.044952 TGATACTCCCTCCGTCCCATAATA 59.955 45.833 0.00 0.00 0.00 0.98
5534 5891 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5535 5892 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5536 5893 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
5537 5894 3.961408 CTCCCTCCGTCCCATAATATAGG 59.039 52.174 0.00 0.00 0.00 2.57
5538 5895 3.599240 TCCCTCCGTCCCATAATATAGGA 59.401 47.826 0.00 0.00 0.00 2.94
5539 5896 3.705072 CCCTCCGTCCCATAATATAGGAC 59.295 52.174 7.65 7.65 45.49 3.85
5711 6068 1.275291 CGTAGGAGCCTGAAGGTTCAA 59.725 52.381 14.28 0.33 45.85 2.69
5712 6069 2.289444 CGTAGGAGCCTGAAGGTTCAAA 60.289 50.000 14.28 0.00 45.85 2.69
5751 6108 3.481453 GAGGAAACCTGGCTGATTATCC 58.519 50.000 0.00 0.00 31.76 2.59
5768 6125 6.322969 TGATTATCCTGAATGAAGCAGCAAAT 59.677 34.615 0.00 0.00 32.06 2.32
5939 6300 6.309357 AGATTGATTTAGCTGATGGGCAATA 58.691 36.000 0.00 0.00 34.17 1.90
6158 6519 0.610232 AATGGCAGAAGAGCACCCAC 60.610 55.000 0.00 0.00 35.83 4.61
6330 6691 5.468540 AACTCCAAAAAGGCCTTTGATAC 57.531 39.130 31.02 0.00 38.35 2.24
6331 6692 4.479158 ACTCCAAAAAGGCCTTTGATACA 58.521 39.130 31.02 13.22 38.35 2.29
6390 6754 6.655078 ATGCTTTTTCAACAATCCTACAGT 57.345 33.333 0.00 0.00 0.00 3.55
6399 6763 2.501723 ACAATCCTACAGTCGGAAGCAT 59.498 45.455 0.00 0.00 33.55 3.79
6435 6799 1.202627 GCACAAAAATGGTGGGAAGCA 60.203 47.619 0.00 0.00 36.76 3.91
6438 6802 4.136051 CACAAAAATGGTGGGAAGCAAAT 58.864 39.130 0.00 0.00 32.65 2.32
6478 6842 0.319555 GTACAGCAGCACGGAACAGA 60.320 55.000 0.00 0.00 0.00 3.41
6482 6846 0.390866 AGCAGCACGGAACAGATGAG 60.391 55.000 0.00 0.00 0.00 2.90
6498 6862 4.642437 CAGATGAGAGAGTAACCAGCTGTA 59.358 45.833 13.81 0.00 38.00 2.74
6502 6866 4.218635 TGAGAGAGTAACCAGCTGTAACAG 59.781 45.833 13.81 0.00 34.12 3.16
6569 6934 8.025243 TCCGTTCACAAATAAAGATGTTCTAC 57.975 34.615 0.00 0.00 0.00 2.59
6632 6997 4.946772 TGTTTGTTCACTCATTTCAGTCCA 59.053 37.500 0.00 0.00 0.00 4.02
6664 7029 8.863086 AGTCCATAATGAAATATCCAAACCATG 58.137 33.333 0.00 0.00 0.00 3.66
6670 7035 7.614124 ATGAAATATCCAAACCATGTTTTGC 57.386 32.000 10.04 0.00 35.48 3.68
6671 7036 6.528321 TGAAATATCCAAACCATGTTTTGCA 58.472 32.000 10.04 0.00 35.48 4.08
6681 7047 0.678950 ATGTTTTGCAAACCGAGGGG 59.321 50.000 12.39 0.00 40.11 4.79
6726 7092 8.718102 ATGGTACTGTTCAGTAATGACAATAC 57.282 34.615 13.24 0.00 0.00 1.89
6727 7093 7.101054 TGGTACTGTTCAGTAATGACAATACC 58.899 38.462 18.11 18.11 0.00 2.73
6729 7095 8.472413 GGTACTGTTCAGTAATGACAATACCTA 58.528 37.037 17.87 0.00 0.00 3.08
6731 7097 8.135382 ACTGTTCAGTAATGACAATACCTAGT 57.865 34.615 3.47 0.00 0.00 2.57
6732 7098 8.035394 ACTGTTCAGTAATGACAATACCTAGTG 58.965 37.037 3.47 0.00 0.00 2.74
6761 7127 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
6762 7128 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
6763 7129 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
6764 7130 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
6765 7131 4.100498 GTCTTACATTATGGGACGGAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
6766 7132 4.717778 TCTTACATTATGGGACGGAGGAAA 59.282 41.667 0.00 0.00 0.00 3.13
6768 7134 2.844348 ACATTATGGGACGGAGGAAAGT 59.156 45.455 0.00 0.00 0.00 2.66
6769 7135 4.035112 ACATTATGGGACGGAGGAAAGTA 58.965 43.478 0.00 0.00 0.00 2.24
6771 7137 2.249309 ATGGGACGGAGGAAAGTACT 57.751 50.000 0.00 0.00 0.00 2.73
6779 7145 1.849977 GAGGAAAGTACTCCCTCCGT 58.150 55.000 23.74 9.94 40.35 4.69
6780 7146 2.177734 GAGGAAAGTACTCCCTCCGTT 58.822 52.381 23.74 3.70 40.35 4.44
6781 7147 2.166050 GAGGAAAGTACTCCCTCCGTTC 59.834 54.545 23.74 11.29 40.35 3.95
6782 7148 1.206610 GGAAAGTACTCCCTCCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
6783 7149 1.897802 GAAAGTACTCCCTCCGTTCCA 59.102 52.381 0.00 0.00 0.00 3.53
6784 7150 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
6785 7151 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
6786 7152 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
6787 7153 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
6789 7155 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
6790 7156 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
6791 7157 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
6792 7158 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
6794 7160 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
6795 7161 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
6796 7162 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
6797 7163 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
6798 7164 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
6799 7165 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
6800 7166 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
6802 7168 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
6803 7169 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
6804 7170 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
6807 7173 1.148310 ACTCGTCGCAGAAATGGTTG 58.852 50.000 0.00 0.00 39.69 3.77
6808 7174 1.148310 CTCGTCGCAGAAATGGTTGT 58.852 50.000 0.00 0.00 39.69 3.32
6809 7175 2.288579 ACTCGTCGCAGAAATGGTTGTA 60.289 45.455 0.00 0.00 39.69 2.41
6810 7176 2.930040 CTCGTCGCAGAAATGGTTGTAT 59.070 45.455 0.00 0.00 39.69 2.29
6813 7179 4.109766 CGTCGCAGAAATGGTTGTATCTA 58.890 43.478 0.00 0.00 39.69 1.98
6815 7181 5.348986 GTCGCAGAAATGGTTGTATCTAGA 58.651 41.667 0.00 0.00 39.69 2.43
6817 7183 5.810587 TCGCAGAAATGGTTGTATCTAGAAC 59.189 40.000 0.00 0.00 0.00 3.01
6819 7185 6.978659 CGCAGAAATGGTTGTATCTAGAACTA 59.021 38.462 0.00 0.00 30.96 2.24
6820 7186 7.491372 CGCAGAAATGGTTGTATCTAGAACTAA 59.509 37.037 0.00 0.00 30.96 2.24
6847 7213 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
6848 7214 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
6849 7215 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
6850 7216 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
6851 7217 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
6852 7218 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
6853 7219 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
6854 7220 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
6855 7221 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
6856 7222 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
6857 7223 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
6858 7224 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
6859 7225 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
6860 7226 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
6861 7227 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
6862 7228 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
6863 7229 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
6864 7230 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
6877 7243 4.781264 GGAACGGAGGGAGTAGGT 57.219 61.111 0.00 0.00 0.00 3.08
6878 7244 3.911719 GGAACGGAGGGAGTAGGTA 57.088 57.895 0.00 0.00 0.00 3.08
6879 7245 2.149973 GGAACGGAGGGAGTAGGTAA 57.850 55.000 0.00 0.00 0.00 2.85
6880 7246 2.030371 GGAACGGAGGGAGTAGGTAAG 58.970 57.143 0.00 0.00 0.00 2.34
6881 7247 2.622714 GGAACGGAGGGAGTAGGTAAGT 60.623 54.545 0.00 0.00 0.00 2.24
6882 7248 3.372025 GGAACGGAGGGAGTAGGTAAGTA 60.372 52.174 0.00 0.00 0.00 2.24
6883 7249 3.574354 ACGGAGGGAGTAGGTAAGTAG 57.426 52.381 0.00 0.00 0.00 2.57
6884 7250 2.174424 ACGGAGGGAGTAGGTAAGTAGG 59.826 54.545 0.00 0.00 0.00 3.18
6885 7251 2.441001 CGGAGGGAGTAGGTAAGTAGGA 59.559 54.545 0.00 0.00 0.00 2.94
6886 7252 3.496515 CGGAGGGAGTAGGTAAGTAGGAG 60.497 56.522 0.00 0.00 0.00 3.69
6887 7253 3.462954 GGAGGGAGTAGGTAAGTAGGAGT 59.537 52.174 0.00 0.00 0.00 3.85
6888 7254 4.662650 GGAGGGAGTAGGTAAGTAGGAGTA 59.337 50.000 0.00 0.00 0.00 2.59
6889 7255 5.221904 GGAGGGAGTAGGTAAGTAGGAGTAG 60.222 52.000 0.00 0.00 0.00 2.57
6890 7256 5.546625 AGGGAGTAGGTAAGTAGGAGTAGA 58.453 45.833 0.00 0.00 0.00 2.59
6891 7257 6.159712 AGGGAGTAGGTAAGTAGGAGTAGAT 58.840 44.000 0.00 0.00 0.00 1.98
6892 7258 6.273026 AGGGAGTAGGTAAGTAGGAGTAGATC 59.727 46.154 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.558533 GGAACCACTCTCCGGTAAAATGT 60.559 47.826 0.00 0.00 34.99 2.71
19 20 2.304092 ACAAAGGTCCGAAAAGGGAAC 58.696 47.619 0.00 0.00 44.52 3.62
20 21 2.691011 CAACAAAGGTCCGAAAAGGGAA 59.309 45.455 0.00 0.00 41.52 3.97
21 22 2.303175 CAACAAAGGTCCGAAAAGGGA 58.697 47.619 0.00 0.00 41.52 4.20
22 23 2.028876 ACAACAAAGGTCCGAAAAGGG 58.971 47.619 0.00 0.00 41.52 3.95
23 24 2.034179 GGACAACAAAGGTCCGAAAAGG 59.966 50.000 0.00 0.00 44.80 3.11
24 25 3.349488 GGACAACAAAGGTCCGAAAAG 57.651 47.619 0.00 0.00 44.80 2.27
31 32 9.406828 GTAAAATATTTCAGGACAACAAAGGTC 57.593 33.333 0.10 0.00 34.52 3.85
32 33 8.919145 TGTAAAATATTTCAGGACAACAAAGGT 58.081 29.630 0.10 0.00 0.00 3.50
33 34 9.757227 TTGTAAAATATTTCAGGACAACAAAGG 57.243 29.630 0.10 0.00 0.00 3.11
67 68 9.958180 TCATCTCATTAAATAAGGACAAGAACA 57.042 29.630 0.00 0.00 0.00 3.18
69 70 9.618890 CCTCATCTCATTAAATAAGGACAAGAA 57.381 33.333 0.00 0.00 0.00 2.52
70 71 7.716998 GCCTCATCTCATTAAATAAGGACAAGA 59.283 37.037 0.00 0.00 0.00 3.02
71 72 7.500227 TGCCTCATCTCATTAAATAAGGACAAG 59.500 37.037 0.00 0.00 0.00 3.16
72 73 7.345691 TGCCTCATCTCATTAAATAAGGACAA 58.654 34.615 0.00 0.00 0.00 3.18
73 74 6.899089 TGCCTCATCTCATTAAATAAGGACA 58.101 36.000 0.00 0.00 0.00 4.02
74 75 7.220030 TCTGCCTCATCTCATTAAATAAGGAC 58.780 38.462 0.00 0.00 0.00 3.85
75 76 7.379059 TCTGCCTCATCTCATTAAATAAGGA 57.621 36.000 0.00 0.00 0.00 3.36
76 77 7.718753 AGTTCTGCCTCATCTCATTAAATAAGG 59.281 37.037 0.00 0.00 0.00 2.69
77 78 8.674263 AGTTCTGCCTCATCTCATTAAATAAG 57.326 34.615 0.00 0.00 0.00 1.73
78 79 9.466497 AAAGTTCTGCCTCATCTCATTAAATAA 57.534 29.630 0.00 0.00 0.00 1.40
79 80 9.466497 AAAAGTTCTGCCTCATCTCATTAAATA 57.534 29.630 0.00 0.00 0.00 1.40
80 81 7.951347 AAAGTTCTGCCTCATCTCATTAAAT 57.049 32.000 0.00 0.00 0.00 1.40
81 82 7.596494 CAAAAGTTCTGCCTCATCTCATTAAA 58.404 34.615 0.00 0.00 0.00 1.52
82 83 6.349611 GCAAAAGTTCTGCCTCATCTCATTAA 60.350 38.462 0.00 0.00 33.51 1.40
83 84 5.124457 GCAAAAGTTCTGCCTCATCTCATTA 59.876 40.000 0.00 0.00 33.51 1.90
84 85 4.082354 GCAAAAGTTCTGCCTCATCTCATT 60.082 41.667 0.00 0.00 33.51 2.57
85 86 3.442977 GCAAAAGTTCTGCCTCATCTCAT 59.557 43.478 0.00 0.00 33.51 2.90
86 87 2.816087 GCAAAAGTTCTGCCTCATCTCA 59.184 45.455 0.00 0.00 33.51 3.27
87 88 3.484334 GCAAAAGTTCTGCCTCATCTC 57.516 47.619 0.00 0.00 33.51 2.75
95 96 2.492019 AACGAAGGCAAAAGTTCTGC 57.508 45.000 0.00 0.00 39.16 4.26
96 97 6.879188 TTTAAAACGAAGGCAAAAGTTCTG 57.121 33.333 0.00 0.00 0.00 3.02
97 98 7.892778 TTTTTAAAACGAAGGCAAAAGTTCT 57.107 28.000 0.00 0.00 0.00 3.01
119 120 4.837860 TCAGCCCTGTGTTGGATTATTTTT 59.162 37.500 0.00 0.00 0.00 1.94
120 121 4.220602 GTCAGCCCTGTGTTGGATTATTTT 59.779 41.667 0.00 0.00 0.00 1.82
121 122 3.763897 GTCAGCCCTGTGTTGGATTATTT 59.236 43.478 0.00 0.00 0.00 1.40
122 123 3.356290 GTCAGCCCTGTGTTGGATTATT 58.644 45.455 0.00 0.00 0.00 1.40
123 124 2.680805 CGTCAGCCCTGTGTTGGATTAT 60.681 50.000 0.00 0.00 0.00 1.28
124 125 1.338674 CGTCAGCCCTGTGTTGGATTA 60.339 52.381 0.00 0.00 0.00 1.75
125 126 0.606401 CGTCAGCCCTGTGTTGGATT 60.606 55.000 0.00 0.00 0.00 3.01
126 127 1.003355 CGTCAGCCCTGTGTTGGAT 60.003 57.895 0.00 0.00 0.00 3.41
127 128 1.480212 ATCGTCAGCCCTGTGTTGGA 61.480 55.000 0.00 0.00 0.00 3.53
128 129 1.003355 ATCGTCAGCCCTGTGTTGG 60.003 57.895 0.00 0.00 0.00 3.77
129 130 1.915614 GCATCGTCAGCCCTGTGTTG 61.916 60.000 0.00 0.00 0.00 3.33
130 131 1.672356 GCATCGTCAGCCCTGTGTT 60.672 57.895 0.00 0.00 0.00 3.32
131 132 2.046892 GCATCGTCAGCCCTGTGT 60.047 61.111 0.00 0.00 0.00 3.72
132 133 2.821366 GGCATCGTCAGCCCTGTG 60.821 66.667 4.55 0.00 46.50 3.66
158 159 2.586245 CTCTTCAGCATCCCCGCA 59.414 61.111 0.00 0.00 0.00 5.69
161 162 2.003548 ACCCCTCTTCAGCATCCCC 61.004 63.158 0.00 0.00 0.00 4.81
178 179 5.343325 GCCTGATTTTCGTTTTTCTGATCAC 59.657 40.000 0.00 0.00 0.00 3.06
179 180 5.460646 GCCTGATTTTCGTTTTTCTGATCA 58.539 37.500 0.00 0.00 0.00 2.92
180 181 4.554973 CGCCTGATTTTCGTTTTTCTGATC 59.445 41.667 0.00 0.00 0.00 2.92
181 182 4.475944 CGCCTGATTTTCGTTTTTCTGAT 58.524 39.130 0.00 0.00 0.00 2.90
182 183 3.851838 GCGCCTGATTTTCGTTTTTCTGA 60.852 43.478 0.00 0.00 0.00 3.27
183 184 2.405025 GCGCCTGATTTTCGTTTTTCTG 59.595 45.455 0.00 0.00 0.00 3.02
184 185 2.607038 GGCGCCTGATTTTCGTTTTTCT 60.607 45.455 22.15 0.00 0.00 2.52
185 186 1.719246 GGCGCCTGATTTTCGTTTTTC 59.281 47.619 22.15 0.00 0.00 2.29
186 187 1.067821 TGGCGCCTGATTTTCGTTTTT 59.932 42.857 29.70 0.00 0.00 1.94
193 194 1.747355 CAGAATCTGGCGCCTGATTTT 59.253 47.619 43.09 38.08 42.11 1.82
211 212 1.947013 CTGCCATGGATTAGCGCAG 59.053 57.895 18.40 9.77 40.81 5.18
214 215 0.464373 ACCACTGCCATGGATTAGCG 60.464 55.000 18.40 4.07 43.02 4.26
316 318 2.797156 CTGCTTCGTAATCTTGGATCCG 59.203 50.000 7.39 0.00 0.00 4.18
318 320 2.545946 GCCTGCTTCGTAATCTTGGATC 59.454 50.000 0.00 0.00 0.00 3.36
375 378 4.276926 ACATCTGTTGCTGTTTTCTCCTTC 59.723 41.667 0.00 0.00 0.00 3.46
400 403 6.425721 TGTTTGTTTCTGTAGTACTACATGCC 59.574 38.462 30.78 20.10 44.15 4.40
401 404 7.416154 TGTTTGTTTCTGTAGTACTACATGC 57.584 36.000 30.78 21.19 44.15 4.06
402 405 7.360101 GGCTGTTTGTTTCTGTAGTACTACATG 60.360 40.741 30.78 23.92 44.15 3.21
403 406 6.649557 GGCTGTTTGTTTCTGTAGTACTACAT 59.350 38.462 30.78 0.00 44.15 2.29
404 407 5.987347 GGCTGTTTGTTTCTGTAGTACTACA 59.013 40.000 29.21 29.21 43.14 2.74
405 408 6.221659 AGGCTGTTTGTTTCTGTAGTACTAC 58.778 40.000 23.58 23.58 36.63 2.73
406 409 6.267014 AGAGGCTGTTTGTTTCTGTAGTACTA 59.733 38.462 0.00 0.00 0.00 1.82
407 410 5.070580 AGAGGCTGTTTGTTTCTGTAGTACT 59.929 40.000 0.00 0.00 0.00 2.73
408 411 5.298347 AGAGGCTGTTTGTTTCTGTAGTAC 58.702 41.667 0.00 0.00 0.00 2.73
429 432 2.241176 GAGGGAGACTCTGAGAGGAAGA 59.759 54.545 14.83 0.00 43.14 2.87
440 443 0.818040 GCGAGGAGAGAGGGAGACTC 60.818 65.000 0.00 0.00 46.98 3.36
531 534 6.780706 TCTGTTTGCTTGTAGTTTAGTAGC 57.219 37.500 0.00 0.00 0.00 3.58
533 536 7.868922 TCGAATCTGTTTGCTTGTAGTTTAGTA 59.131 33.333 0.00 0.00 0.00 1.82
534 537 6.704493 TCGAATCTGTTTGCTTGTAGTTTAGT 59.296 34.615 0.00 0.00 0.00 2.24
535 538 7.010023 GTCGAATCTGTTTGCTTGTAGTTTAG 58.990 38.462 0.00 0.00 0.00 1.85
611 776 8.397906 TGCAGAGGTAAAAATCTTATTCATTCG 58.602 33.333 0.00 0.00 0.00 3.34
624 789 2.614983 GACACGGTTGCAGAGGTAAAAA 59.385 45.455 0.00 0.00 0.00 1.94
625 790 2.158871 AGACACGGTTGCAGAGGTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
665 830 1.006922 GCCTGGTGTGCTTTGCTTC 60.007 57.895 0.00 0.00 0.00 3.86
695 860 4.154347 GAGACCCGAGCCTGCCTG 62.154 72.222 0.00 0.00 0.00 4.85
696 861 3.914551 AAGAGACCCGAGCCTGCCT 62.915 63.158 0.00 0.00 0.00 4.75
697 862 3.378399 GAAGAGACCCGAGCCTGCC 62.378 68.421 0.00 0.00 0.00 4.85
698 863 2.185608 GAAGAGACCCGAGCCTGC 59.814 66.667 0.00 0.00 0.00 4.85
699 864 2.726351 GGGAAGAGACCCGAGCCTG 61.726 68.421 0.00 0.00 40.49 4.85
700 865 2.364448 GGGAAGAGACCCGAGCCT 60.364 66.667 0.00 0.00 40.49 4.58
744 909 3.482436 AGGAAACAGTGGCGATTGTTAA 58.518 40.909 9.90 0.00 36.56 2.01
745 910 3.134574 AGGAAACAGTGGCGATTGTTA 57.865 42.857 9.90 0.00 36.56 2.41
844 1009 4.432741 GGGGCAGAGCTTGGGGAC 62.433 72.222 0.00 0.00 0.00 4.46
941 1109 4.496336 GCAGCACCCTGGGGCTAG 62.496 72.222 22.94 18.36 38.56 3.42
978 1146 1.374252 CGCGGGATAAAGATCGGGG 60.374 63.158 0.00 0.00 32.28 5.73
1053 1221 2.499732 GCTTGCTGCAACGTACGC 60.500 61.111 16.72 9.35 42.31 4.42
1081 1249 4.511527 TCAGAAGAGGATGCAAGATGAAC 58.488 43.478 0.00 0.00 0.00 3.18
1082 1250 4.831674 TCAGAAGAGGATGCAAGATGAA 57.168 40.909 0.00 0.00 0.00 2.57
1164 1333 0.462047 CCGTCTATGCCAACAGGGAC 60.462 60.000 0.00 0.00 40.01 4.46
1173 1342 3.068873 AGAAGAACAGATCCGTCTATGCC 59.931 47.826 0.00 0.00 32.09 4.40
1200 1369 2.278854 GCCAAAAACAGCAGCAAGAAA 58.721 42.857 0.00 0.00 0.00 2.52
1206 1375 2.018324 GCTCGCCAAAAACAGCAGC 61.018 57.895 0.00 0.00 0.00 5.25
1223 1392 1.547372 AGATGGCTGTGGTGAAAATGC 59.453 47.619 0.00 0.00 0.00 3.56
1268 1437 3.511540 TGATGAGACTGAAACGGATCACT 59.488 43.478 0.00 0.00 0.00 3.41
1289 1458 4.346129 GCTGTTCCGAGCTTTGAAATATG 58.654 43.478 0.00 0.00 35.95 1.78
1339 1508 3.319122 AGTGAACACAAAAAGATCCAGGC 59.681 43.478 7.68 0.00 0.00 4.85
1348 1517 7.450124 TTGTAGGTACAAGTGAACACAAAAA 57.550 32.000 7.68 0.00 40.93 1.94
1363 1532 5.292101 CAGCATTGCTACTTCTTGTAGGTAC 59.708 44.000 11.55 0.00 46.52 3.34
1392 1644 1.474077 GGAAACTCATGGCATGTGTCC 59.526 52.381 29.02 23.48 36.10 4.02
1461 1713 0.678048 AGATGGGCGCCTTTCTTGAC 60.678 55.000 28.56 7.32 0.00 3.18
1544 1796 5.091261 AGTATTCTGTAGTGCCAAAGAGG 57.909 43.478 0.00 0.00 41.84 3.69
1567 1819 9.871238 ACGTGTAATTTTCTGATCTTGTAGTAT 57.129 29.630 0.00 0.00 0.00 2.12
1568 1820 9.701098 AACGTGTAATTTTCTGATCTTGTAGTA 57.299 29.630 0.00 0.00 0.00 1.82
1666 1919 6.878389 ACCTCAGTGTTACTACTCACTACTAC 59.122 42.308 0.00 0.00 42.05 2.73
1667 1920 6.877855 CACCTCAGTGTTACTACTCACTACTA 59.122 42.308 0.00 0.00 42.05 1.82
1668 1921 5.706369 CACCTCAGTGTTACTACTCACTACT 59.294 44.000 0.00 0.00 42.05 2.57
1735 1988 5.851177 CACCGTTGAGTTTTACATGATTGAC 59.149 40.000 0.00 0.00 0.00 3.18
1746 1999 3.305398 TGTTTTGCACCGTTGAGTTTT 57.695 38.095 0.00 0.00 0.00 2.43
1756 2009 5.680667 GCATTGTGTAAAAATGTTTTGCACC 59.319 36.000 23.07 10.55 43.61 5.01
1905 2158 9.146586 ACTGTCGGTAATTTACCTTGGTATATA 57.853 33.333 20.56 0.42 46.81 0.86
2052 2305 3.806521 CGTGAAGGAGCATGATAAGAAGG 59.193 47.826 0.00 0.00 0.00 3.46
2175 2428 5.733620 AAACAGAGAATGCATGACCAATT 57.266 34.783 0.00 0.00 0.00 2.32
2277 2531 3.545703 AGTTATGCTGGGCTATTGTGAC 58.454 45.455 0.00 0.00 0.00 3.67
2291 2545 4.268884 TGCAAACCGAAAACAAAGTTATGC 59.731 37.500 0.00 0.00 32.18 3.14
2318 2573 6.537301 TGGAGTACCATATTAGCAGTTTTTCG 59.463 38.462 0.00 0.00 41.77 3.46
2381 2636 1.410004 TCTGTCCGAGAACCACACTT 58.590 50.000 0.00 0.00 0.00 3.16
2410 2665 6.465439 AAAGTGTTTAGGGAAGAAAACCAG 57.535 37.500 0.00 0.00 35.23 4.00
2503 2762 2.045524 TCCTTTTCTGGCCAATGCAAA 58.954 42.857 7.01 0.46 40.13 3.68
2621 2880 0.460311 AAAGGCGGTGATACGAGGAG 59.540 55.000 0.00 0.00 35.47 3.69
2631 2890 6.436843 AAATAGATGTTAGAAAAGGCGGTG 57.563 37.500 0.00 0.00 0.00 4.94
2868 3129 6.422333 TGACATGCATAGGTTCCAAATCTAA 58.578 36.000 0.00 0.00 0.00 2.10
2869 3130 6.000246 TGACATGCATAGGTTCCAAATCTA 58.000 37.500 0.00 0.00 0.00 1.98
2870 3131 4.858850 TGACATGCATAGGTTCCAAATCT 58.141 39.130 0.00 0.00 0.00 2.40
2871 3132 5.300034 TCATGACATGCATAGGTTCCAAATC 59.700 40.000 10.76 0.00 34.82 2.17
2872 3133 5.202765 TCATGACATGCATAGGTTCCAAAT 58.797 37.500 10.76 0.00 34.82 2.32
2873 3134 4.598022 TCATGACATGCATAGGTTCCAAA 58.402 39.130 10.76 0.00 34.82 3.28
2882 3149 8.726988 CATCACATAGAAATCATGACATGCATA 58.273 33.333 10.76 0.00 34.82 3.14
2942 3209 2.154462 GAAAGGTCACAGGTCATGGTG 58.846 52.381 0.00 0.00 36.36 4.17
2951 3218 4.113354 GCGTAATCTAGGAAAGGTCACAG 58.887 47.826 0.00 0.00 0.00 3.66
3007 3274 2.358737 CCGAGCAGTGGGTTGTCC 60.359 66.667 0.00 0.00 0.00 4.02
3009 3276 3.537206 GAGCCGAGCAGTGGGTTGT 62.537 63.158 0.00 0.00 37.33 3.32
3011 3278 3.241530 TGAGCCGAGCAGTGGGTT 61.242 61.111 0.00 0.00 37.33 4.11
3059 3326 2.162408 GGCCAGAATTGTAACACTGCTC 59.838 50.000 0.00 0.00 0.00 4.26
3266 3623 9.601217 ACCTTATTTAGTACTGCATCTGTAAAG 57.399 33.333 5.39 0.00 0.00 1.85
3306 3663 7.759489 TGGCAATTTACAGTCTTTCATAAGT 57.241 32.000 0.00 0.00 32.98 2.24
3333 3690 9.515226 ACAATTTGAAATTACTAGTGGCTAAGA 57.485 29.630 5.39 0.00 0.00 2.10
3396 3753 9.959721 ACAGTGAGTGTACCTTCATAAATAAAT 57.040 29.630 0.00 0.00 37.75 1.40
3404 3761 4.383118 GCCATACAGTGAGTGTACCTTCAT 60.383 45.833 1.63 0.00 44.65 2.57
3436 3793 9.307121 CTCTTCGATACTTTGTTCTGTATCAAT 57.693 33.333 11.87 0.00 42.88 2.57
3476 3833 1.205655 TGGAGAGACGAATGCTTCTGG 59.794 52.381 0.00 0.00 0.00 3.86
3500 3857 3.690139 TCTACATCTGACCACGTTCTCTC 59.310 47.826 0.00 0.00 0.00 3.20
3586 3943 2.036217 CTGAATTTTTGCAGCCACTGGA 59.964 45.455 0.00 0.00 31.21 3.86
3704 4061 0.478072 TCCAACACACTGCCTGGAAT 59.522 50.000 0.00 0.00 31.90 3.01
3811 4168 4.708726 AACTATTGCTGCATGTTTCTCC 57.291 40.909 1.84 0.00 0.00 3.71
3893 4250 1.911057 TCGGAGACACTGACACTCAT 58.089 50.000 0.00 0.00 33.00 2.90
4198 4555 1.680735 GTGTTGCCATGTCCAAGAACA 59.319 47.619 0.00 0.00 0.00 3.18
4264 4621 0.178953 ATGCCACAGCCTTGGTTCTT 60.179 50.000 3.24 0.00 39.09 2.52
4268 4625 1.904865 CACATGCCACAGCCTTGGT 60.905 57.895 3.24 0.00 39.09 3.67
4403 4760 4.023193 AGTCGGTACAAGCTTGGATTTTTG 60.023 41.667 29.18 12.51 0.00 2.44
4433 4790 3.540314 ATCAGAATCAGTGAGTGGCTC 57.460 47.619 0.00 0.00 0.00 4.70
4474 4831 1.080772 CGCGACTGTCAGTGCCTTA 60.081 57.895 11.04 0.00 0.00 2.69
4491 4848 4.742438 ACAACACCTGTTATTGTAAGCG 57.258 40.909 0.00 0.00 32.99 4.68
4530 4887 1.072489 TGCCTAATTGTCCGTGTTCCA 59.928 47.619 0.00 0.00 0.00 3.53
4582 4939 2.306219 AGTCTTAAGAGGCCCTTCAACC 59.694 50.000 5.12 0.00 36.34 3.77
4799 5156 5.007682 AGACCTATGTAAACAAACCGCAAT 58.992 37.500 0.00 0.00 0.00 3.56
4876 5233 3.344904 CAGTTGTGCTTCTTCCTTGTG 57.655 47.619 0.00 0.00 0.00 3.33
4981 5338 1.463056 CACACATCGCAAACACGGTAT 59.537 47.619 0.00 0.00 0.00 2.73
5104 5461 6.844696 TCCTTGAATATGCGTGATAACTTC 57.155 37.500 0.00 0.00 0.00 3.01
5110 5467 3.544684 TGCTTCCTTGAATATGCGTGAT 58.455 40.909 0.00 0.00 0.00 3.06
5191 5548 1.893808 CAGTTGAACCGGTGCAGCT 60.894 57.895 25.33 25.33 0.00 4.24
5217 5574 0.761802 CTCTACTTGCCCCCATCTCC 59.238 60.000 0.00 0.00 0.00 3.71
5314 5671 2.977914 TCAGGCATTCTCTGTGTAAGC 58.022 47.619 0.00 0.00 34.15 3.09
5341 5698 3.173323 CCGGTACCTTTTGGGGGT 58.827 61.111 10.90 0.00 46.08 4.95
5514 5871 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5515 5872 3.961408 CCTATATTATGGGACGGAGGGAG 59.039 52.174 0.00 0.00 31.57 4.30
5516 5873 3.599240 TCCTATATTATGGGACGGAGGGA 59.401 47.826 4.74 0.00 34.71 4.20
5517 5874 3.990369 TCCTATATTATGGGACGGAGGG 58.010 50.000 4.74 0.00 34.71 4.30
5692 6049 3.418684 TTTGAACCTTCAGGCTCCTAC 57.581 47.619 0.00 0.00 38.61 3.18
5711 6068 5.051816 TCCTCGACTTTTCGTTTGTACATT 58.948 37.500 0.00 0.00 46.01 2.71
5712 6069 4.624015 TCCTCGACTTTTCGTTTGTACAT 58.376 39.130 0.00 0.00 46.01 2.29
5751 6108 3.322369 TGCAATTTGCTGCTTCATTCAG 58.678 40.909 21.19 0.00 45.31 3.02
5864 6225 5.637006 TTGCGCCAGACAACTTATTTTAT 57.363 34.783 4.18 0.00 0.00 1.40
5930 6291 7.297614 AGTTATGGAGTTGTATTATTGCCCAT 58.702 34.615 0.00 0.00 37.05 4.00
5939 6300 8.813951 GGCTAGGTATAGTTATGGAGTTGTATT 58.186 37.037 0.00 0.00 0.00 1.89
6158 6519 3.067106 CCGGCATAGGTATTGCTGTTAG 58.933 50.000 0.00 0.00 43.50 2.34
6330 6691 8.964476 AGTAAATTATCTAGGGAATGTGTGTG 57.036 34.615 0.00 0.00 0.00 3.82
6331 6692 9.396022 CAAGTAAATTATCTAGGGAATGTGTGT 57.604 33.333 0.00 0.00 0.00 3.72
6375 6739 3.616560 GCTTCCGACTGTAGGATTGTTGA 60.617 47.826 10.53 0.00 37.65 3.18
6376 6740 2.673368 GCTTCCGACTGTAGGATTGTTG 59.327 50.000 10.53 1.43 37.65 3.33
6390 6754 0.321210 TCTCGCCAAAATGCTTCCGA 60.321 50.000 0.00 0.00 0.00 4.55
6399 6763 0.951558 GTGCTTCCTTCTCGCCAAAA 59.048 50.000 0.00 0.00 0.00 2.44
6478 6842 4.772624 TGTTACAGCTGGTTACTCTCTCAT 59.227 41.667 19.93 0.00 30.52 2.90
6498 6862 2.831685 TACAATGTCAGTCGGCTGTT 57.168 45.000 18.04 0.52 43.05 3.16
6502 6866 2.477863 GCCATTTACAATGTCAGTCGGC 60.478 50.000 0.00 0.00 0.00 5.54
6569 6934 5.835113 ATACATCCGATTCACAAAAAGGG 57.165 39.130 0.00 0.00 0.00 3.95
6660 7025 1.605202 CCCTCGGTTTGCAAAACATGG 60.605 52.381 25.95 23.58 0.00 3.66
6664 7029 1.365999 CCCCCTCGGTTTGCAAAAC 59.634 57.895 17.50 17.50 0.00 2.43
6669 7034 0.614812 TTACTACCCCCTCGGTTTGC 59.385 55.000 0.00 0.00 45.36 3.68
6670 7035 3.639672 ATTTACTACCCCCTCGGTTTG 57.360 47.619 0.00 0.00 45.36 2.93
6671 7036 4.080919 GTGTATTTACTACCCCCTCGGTTT 60.081 45.833 0.00 0.00 45.36 3.27
6681 7047 9.310716 GTACCATCTTTCAGTGTATTTACTACC 57.689 37.037 0.00 0.00 0.00 3.18
6736 7102 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
6737 7103 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
6738 7104 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
6742 7108 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
6743 7109 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
6744 7110 4.682778 TTCCTCCGTCCCATAATGTAAG 57.317 45.455 0.00 0.00 0.00 2.34
6745 7111 4.472108 ACTTTCCTCCGTCCCATAATGTAA 59.528 41.667 0.00 0.00 0.00 2.41
6746 7112 4.035112 ACTTTCCTCCGTCCCATAATGTA 58.965 43.478 0.00 0.00 0.00 2.29
6747 7113 2.844348 ACTTTCCTCCGTCCCATAATGT 59.156 45.455 0.00 0.00 0.00 2.71
6748 7114 3.560636 ACTTTCCTCCGTCCCATAATG 57.439 47.619 0.00 0.00 0.00 1.90
6751 7117 3.294214 GAGTACTTTCCTCCGTCCCATA 58.706 50.000 0.00 0.00 0.00 2.74
6752 7118 2.108970 GAGTACTTTCCTCCGTCCCAT 58.891 52.381 0.00 0.00 0.00 4.00
6753 7119 1.553706 GAGTACTTTCCTCCGTCCCA 58.446 55.000 0.00 0.00 0.00 4.37
6760 7126 1.849977 ACGGAGGGAGTACTTTCCTC 58.150 55.000 25.87 25.87 44.64 3.71
6761 7127 2.177734 GAACGGAGGGAGTACTTTCCT 58.822 52.381 15.83 15.83 37.40 3.36
6762 7128 1.206610 GGAACGGAGGGAGTACTTTCC 59.793 57.143 0.00 0.27 36.46 3.13
6763 7129 1.897802 TGGAACGGAGGGAGTACTTTC 59.102 52.381 0.00 0.00 0.00 2.62
6764 7130 2.019807 TGGAACGGAGGGAGTACTTT 57.980 50.000 0.00 0.00 0.00 2.66
6765 7131 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
6766 7132 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
6768 7134 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
6769 7135 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
6771 7137 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
6773 7139 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6774 7140 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
6775 7141 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
6776 7142 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
6777 7143 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
6779 7145 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
6780 7146 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
6781 7147 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
6782 7148 4.142902 ACCATTTCTGCGACGAGTAATTTG 60.143 41.667 0.00 0.00 0.00 2.32
6783 7149 4.000988 ACCATTTCTGCGACGAGTAATTT 58.999 39.130 0.00 0.00 0.00 1.82
6784 7150 3.596214 ACCATTTCTGCGACGAGTAATT 58.404 40.909 0.00 0.00 0.00 1.40
6785 7151 3.247006 ACCATTTCTGCGACGAGTAAT 57.753 42.857 0.00 0.00 0.00 1.89
6786 7152 2.734606 CAACCATTTCTGCGACGAGTAA 59.265 45.455 0.00 0.00 0.00 2.24
6787 7153 2.288579 ACAACCATTTCTGCGACGAGTA 60.289 45.455 0.00 0.00 0.00 2.59
6789 7155 1.148310 ACAACCATTTCTGCGACGAG 58.852 50.000 0.00 0.00 0.00 4.18
6790 7156 2.442212 TACAACCATTTCTGCGACGA 57.558 45.000 0.00 0.00 0.00 4.20
6791 7157 2.930040 AGATACAACCATTTCTGCGACG 59.070 45.455 0.00 0.00 0.00 5.12
6792 7158 5.348986 TCTAGATACAACCATTTCTGCGAC 58.651 41.667 0.00 0.00 0.00 5.19
6794 7160 5.812642 AGTTCTAGATACAACCATTTCTGCG 59.187 40.000 0.00 0.00 0.00 5.18
6795 7161 8.718102 TTAGTTCTAGATACAACCATTTCTGC 57.282 34.615 0.00 0.00 0.00 4.26
6822 7188 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
6824 7190 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
6825 7191 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
6826 7192 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
6827 7193 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
6828 7194 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
6829 7195 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
6830 7196 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
6831 7197 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
6832 7198 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
6833 7199 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
6834 7200 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
6835 7201 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
6836 7202 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
6837 7203 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
6838 7204 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
6839 7205 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
6840 7206 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
6841 7207 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
6842 7208 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
6843 7209 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
6844 7210 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
6845 7211 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
6846 7212 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
6847 7213 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
6848 7214 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6849 7215 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6850 7216 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6851 7217 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
6852 7218 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
6853 7219 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
6854 7220 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
6855 7221 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
6856 7222 1.400737 CTACTCCCTCCGTTCCGAAT 58.599 55.000 0.00 0.00 0.00 3.34
6857 7223 0.682209 CCTACTCCCTCCGTTCCGAA 60.682 60.000 0.00 0.00 0.00 4.30
6858 7224 1.077212 CCTACTCCCTCCGTTCCGA 60.077 63.158 0.00 0.00 0.00 4.55
6859 7225 0.107017 TACCTACTCCCTCCGTTCCG 60.107 60.000 0.00 0.00 0.00 4.30
6860 7226 2.030371 CTTACCTACTCCCTCCGTTCC 58.970 57.143 0.00 0.00 0.00 3.62
6861 7227 2.732763 ACTTACCTACTCCCTCCGTTC 58.267 52.381 0.00 0.00 0.00 3.95
6862 7228 2.915657 ACTTACCTACTCCCTCCGTT 57.084 50.000 0.00 0.00 0.00 4.44
6863 7229 2.174424 CCTACTTACCTACTCCCTCCGT 59.826 54.545 0.00 0.00 0.00 4.69
6864 7230 2.441001 TCCTACTTACCTACTCCCTCCG 59.559 54.545 0.00 0.00 0.00 4.63
6865 7231 3.462954 ACTCCTACTTACCTACTCCCTCC 59.537 52.174 0.00 0.00 0.00 4.30
6866 7232 4.794311 ACTCCTACTTACCTACTCCCTC 57.206 50.000 0.00 0.00 0.00 4.30
6867 7233 5.546625 TCTACTCCTACTTACCTACTCCCT 58.453 45.833 0.00 0.00 0.00 4.20
6868 7234 5.903198 TCTACTCCTACTTACCTACTCCC 57.097 47.826 0.00 0.00 0.00 4.30
6869 7235 6.475504 GGATCTACTCCTACTTACCTACTCC 58.524 48.000 0.00 0.00 41.29 3.85
6870 7236 6.475504 GGGATCTACTCCTACTTACCTACTC 58.524 48.000 0.00 0.00 44.28 2.59
6871 7237 5.312974 GGGGATCTACTCCTACTTACCTACT 59.687 48.000 0.00 0.00 44.28 2.57
6872 7238 5.074239 TGGGGATCTACTCCTACTTACCTAC 59.926 48.000 0.00 0.00 44.28 3.18
6873 7239 5.237935 TGGGGATCTACTCCTACTTACCTA 58.762 45.833 0.00 0.00 44.28 3.08
6874 7240 4.060192 TGGGGATCTACTCCTACTTACCT 58.940 47.826 0.00 0.00 44.28 3.08
6875 7241 4.466255 TGGGGATCTACTCCTACTTACC 57.534 50.000 0.00 0.00 44.28 2.85
6876 7242 4.773149 CCATGGGGATCTACTCCTACTTAC 59.227 50.000 2.85 0.00 44.28 2.34
6877 7243 4.422592 ACCATGGGGATCTACTCCTACTTA 59.577 45.833 18.09 0.00 44.28 2.24
6878 7244 3.210074 ACCATGGGGATCTACTCCTACTT 59.790 47.826 18.09 0.00 44.28 2.24
6879 7245 2.798368 ACCATGGGGATCTACTCCTACT 59.202 50.000 18.09 0.00 44.28 2.57
6880 7246 3.261818 ACCATGGGGATCTACTCCTAC 57.738 52.381 18.09 0.00 44.28 3.18
6881 7247 5.152934 GTTAACCATGGGGATCTACTCCTA 58.847 45.833 18.09 0.00 44.28 2.94
6882 7248 2.897823 AACCATGGGGATCTACTCCT 57.102 50.000 18.09 0.00 44.28 3.69
6883 7249 3.072622 GGTTAACCATGGGGATCTACTCC 59.927 52.174 20.12 2.24 38.53 3.85
6884 7250 3.072622 GGGTTAACCATGGGGATCTACTC 59.927 52.174 25.71 1.34 39.85 2.59
6885 7251 3.053826 GGGTTAACCATGGGGATCTACT 58.946 50.000 25.71 0.00 39.85 2.57
6886 7252 2.107726 GGGGTTAACCATGGGGATCTAC 59.892 54.545 25.71 3.93 42.91 2.59
6887 7253 2.020441 AGGGGTTAACCATGGGGATCTA 60.020 50.000 25.71 0.00 42.91 1.98
6888 7254 1.231963 GGGGTTAACCATGGGGATCT 58.768 55.000 25.71 0.00 42.91 2.75
6889 7255 1.231963 AGGGGTTAACCATGGGGATC 58.768 55.000 25.71 5.88 42.91 3.36
6890 7256 2.617207 TAGGGGTTAACCATGGGGAT 57.383 50.000 25.71 4.34 42.91 3.85
6891 7257 2.617207 ATAGGGGTTAACCATGGGGA 57.383 50.000 25.71 0.00 42.91 4.81
6892 7258 3.920197 TCATATAGGGGTTAACCATGGGG 59.080 47.826 25.71 8.93 42.91 4.96
6893 7259 5.015178 ACATCATATAGGGGTTAACCATGGG 59.985 44.000 25.71 16.23 42.91 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.