Multiple sequence alignment - TraesCS6A01G259800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G259800 chr6A 100.000 4781 0 0 1 4781 483732501 483737281 0.000000e+00 8829.0
1 TraesCS6A01G259800 chr6D 91.894 3960 164 57 92 3978 343293531 343297406 0.000000e+00 5389.0
2 TraesCS6A01G259800 chr6D 85.798 683 65 20 4102 4770 343303216 343303880 0.000000e+00 695.0
3 TraesCS6A01G259800 chr6D 94.805 154 7 1 3972 4124 343303035 343303188 6.180000e-59 239.0
4 TraesCS6A01G259800 chr6B 88.181 2166 136 39 92 2210 518025295 518027387 0.000000e+00 2471.0
5 TraesCS6A01G259800 chr6B 86.200 1616 151 36 2553 4121 518027607 518029197 0.000000e+00 1683.0
6 TraesCS6A01G259800 chr6B 84.698 281 15 11 4481 4759 518030476 518030730 6.140000e-64 255.0
7 TraesCS6A01G259800 chr6B 78.182 330 52 11 1887 2206 660277147 660277466 4.880000e-45 193.0
8 TraesCS6A01G259800 chr6B 87.069 116 12 3 1 116 360518478 360518366 1.400000e-25 128.0
9 TraesCS6A01G259800 chr6B 91.111 90 8 0 13 102 531555515 531555604 6.500000e-24 122.0
10 TraesCS6A01G259800 chr6B 92.647 68 5 0 2291 2358 707294108 707294041 1.100000e-16 99.0
11 TraesCS6A01G259800 chr6B 82.000 100 15 2 2282 2379 59825861 59825763 1.100000e-11 82.4
12 TraesCS6A01G259800 chr4D 90.476 105 10 0 1 105 321366113 321366009 6.450000e-29 139.0
13 TraesCS6A01G259800 chr4D 88.542 96 11 0 10 105 152704408 152704503 3.020000e-22 117.0
14 TraesCS6A01G259800 chr4D 83.696 92 11 3 2287 2376 20114941 20114852 3.070000e-12 84.2
15 TraesCS6A01G259800 chr2D 93.333 90 6 0 13 102 363863137 363863226 3.000000e-27 134.0
16 TraesCS6A01G259800 chr2D 90.625 96 9 0 13 108 222794391 222794296 1.400000e-25 128.0
17 TraesCS6A01G259800 chr2D 85.393 89 8 5 2301 2387 218045335 218045420 2.370000e-13 87.9
18 TraesCS6A01G259800 chr4A 91.111 90 8 0 13 102 189675398 189675309 6.500000e-24 122.0
19 TraesCS6A01G259800 chr4A 84.783 92 10 4 2284 2373 662286413 662286502 6.590000e-14 89.8
20 TraesCS6A01G259800 chr3D 87.619 105 13 0 1 105 90397014 90397118 6.500000e-24 122.0
21 TraesCS6A01G259800 chr2B 85.841 113 16 0 104 216 370551490 370551378 2.340000e-23 121.0
22 TraesCS6A01G259800 chr2B 87.059 85 9 2 2291 2373 247368538 247368622 1.420000e-15 95.3
23 TraesCS6A01G259800 chr1D 88.000 100 11 1 10 109 260825117 260825215 3.020000e-22 117.0
24 TraesCS6A01G259800 chr7D 89.412 85 6 2 2291 2373 422570859 422570942 2.350000e-18 104.0
25 TraesCS6A01G259800 chr5D 84.091 88 12 1 2291 2376 456063698 456063611 3.070000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G259800 chr6A 483732501 483737281 4780 False 8829.000000 8829 100.000000 1 4781 1 chr6A.!!$F1 4780
1 TraesCS6A01G259800 chr6D 343293531 343297406 3875 False 5389.000000 5389 91.894000 92 3978 1 chr6D.!!$F1 3886
2 TraesCS6A01G259800 chr6D 343303035 343303880 845 False 467.000000 695 90.301500 3972 4770 2 chr6D.!!$F2 798
3 TraesCS6A01G259800 chr6B 518025295 518030730 5435 False 1469.666667 2471 86.359667 92 4759 3 chr6B.!!$F3 4667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 794 0.101759 GCGGCTGATGTTAGGACGTA 59.898 55.000 0.0 0.0 0.00 3.57 F
908 945 0.104725 ATTCCCCAAGCCACCCAAAA 60.105 50.000 0.0 0.0 0.00 2.44 F
2200 2250 0.321564 TGCGATGCAGGTAAAGCAGT 60.322 50.000 0.0 0.0 46.36 4.40 F
3044 3182 1.541588 GGACTTTCATTTTCCGCTGCT 59.458 47.619 0.0 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 1667 2.892852 AGCTGTAAACATTGGCATGTGT 59.107 40.909 0.0 2.34 43.34 3.72 R
2240 2312 3.002246 TGCAGTTCAAAAGACATCACGTC 59.998 43.478 0.0 0.00 45.77 4.34 R
3755 3907 0.464554 GCTGCTGAGGGGATGGTAAC 60.465 60.000 0.0 0.00 0.00 2.50 R
4677 5928 0.101759 TCGGTTGGTACGCTCTATGC 59.898 55.000 0.0 0.00 38.57 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.849911 TGTCTTACCGAAGCTGAAGATG 58.150 45.455 0.00 0.00 31.01 2.90
22 23 3.190874 GTCTTACCGAAGCTGAAGATGG 58.809 50.000 0.00 0.00 31.01 3.51
23 24 2.168521 TCTTACCGAAGCTGAAGATGGG 59.831 50.000 0.00 0.00 32.21 4.00
24 25 0.178068 TACCGAAGCTGAAGATGGGC 59.822 55.000 0.00 0.00 0.00 5.36
25 26 1.821332 CCGAAGCTGAAGATGGGCC 60.821 63.158 0.00 0.00 0.00 5.80
26 27 2.176273 CGAAGCTGAAGATGGGCCG 61.176 63.158 0.00 0.00 0.00 6.13
27 28 1.078143 GAAGCTGAAGATGGGCCGT 60.078 57.895 0.00 0.00 0.00 5.68
28 29 0.178068 GAAGCTGAAGATGGGCCGTA 59.822 55.000 0.00 0.00 0.00 4.02
29 30 0.107654 AAGCTGAAGATGGGCCGTAC 60.108 55.000 0.00 0.00 0.00 3.67
30 31 1.523938 GCTGAAGATGGGCCGTACC 60.524 63.158 0.00 0.00 37.93 3.34
31 32 1.904771 CTGAAGATGGGCCGTACCA 59.095 57.895 0.00 0.00 46.24 3.25
32 33 0.179073 CTGAAGATGGGCCGTACCAG 60.179 60.000 0.00 2.61 45.20 4.00
33 34 1.146263 GAAGATGGGCCGTACCAGG 59.854 63.158 0.00 0.00 45.20 4.45
34 35 1.615424 AAGATGGGCCGTACCAGGT 60.615 57.895 0.00 0.00 45.20 4.00
35 36 1.623542 AAGATGGGCCGTACCAGGTC 61.624 60.000 0.00 0.00 45.20 3.85
36 37 3.441011 GATGGGCCGTACCAGGTCG 62.441 68.421 0.00 0.00 45.20 4.79
38 39 4.139234 GGGCCGTACCAGGTCGTC 62.139 72.222 0.00 0.00 42.05 4.20
39 40 3.376078 GGCCGTACCAGGTCGTCA 61.376 66.667 0.00 0.00 38.86 4.35
40 41 2.652530 GCCGTACCAGGTCGTCAA 59.347 61.111 0.00 0.00 0.00 3.18
41 42 1.217244 GCCGTACCAGGTCGTCAAT 59.783 57.895 0.00 0.00 0.00 2.57
42 43 0.457035 GCCGTACCAGGTCGTCAATA 59.543 55.000 0.00 0.00 0.00 1.90
43 44 1.535437 GCCGTACCAGGTCGTCAATAG 60.535 57.143 0.00 0.00 0.00 1.73
44 45 2.019249 CCGTACCAGGTCGTCAATAGA 58.981 52.381 0.00 0.00 0.00 1.98
45 46 2.033049 CCGTACCAGGTCGTCAATAGAG 59.967 54.545 0.00 0.00 0.00 2.43
46 47 2.541178 CGTACCAGGTCGTCAATAGAGC 60.541 54.545 0.00 0.00 36.46 4.09
47 48 0.824759 ACCAGGTCGTCAATAGAGCC 59.175 55.000 0.00 0.00 36.85 4.70
48 49 0.824109 CCAGGTCGTCAATAGAGCCA 59.176 55.000 0.00 0.00 36.85 4.75
49 50 1.471676 CCAGGTCGTCAATAGAGCCAC 60.472 57.143 0.00 0.00 36.85 5.01
50 51 0.456221 AGGTCGTCAATAGAGCCACG 59.544 55.000 0.00 0.00 36.85 4.94
51 52 1.146358 GGTCGTCAATAGAGCCACGC 61.146 60.000 0.00 0.00 32.21 5.34
52 53 1.141019 TCGTCAATAGAGCCACGCC 59.859 57.895 0.00 0.00 32.21 5.68
53 54 2.230940 CGTCAATAGAGCCACGCCG 61.231 63.158 0.00 0.00 0.00 6.46
54 55 1.153628 GTCAATAGAGCCACGCCGT 60.154 57.895 0.00 0.00 0.00 5.68
55 56 1.153647 TCAATAGAGCCACGCCGTG 60.154 57.895 10.95 10.95 0.00 4.94
76 77 4.340246 TGCAGGCAGGCAGGTCTG 62.340 66.667 6.44 6.44 43.32 3.51
78 79 3.324930 CAGGCAGGCAGGTCTGGA 61.325 66.667 2.75 0.00 36.86 3.86
79 80 2.285969 AGGCAGGCAGGTCTGGAT 60.286 61.111 2.75 0.00 35.43 3.41
80 81 1.003442 AGGCAGGCAGGTCTGGATA 59.997 57.895 2.75 0.00 35.43 2.59
81 82 1.147153 GGCAGGCAGGTCTGGATAC 59.853 63.158 2.75 0.00 35.43 2.24
82 83 1.147153 GCAGGCAGGTCTGGATACC 59.853 63.158 2.75 0.00 40.06 2.73
83 84 1.832912 CAGGCAGGTCTGGATACCC 59.167 63.158 0.00 0.00 40.71 3.69
84 85 0.692419 CAGGCAGGTCTGGATACCCT 60.692 60.000 0.00 0.00 40.71 4.34
85 86 0.941963 AGGCAGGTCTGGATACCCTA 59.058 55.000 0.00 0.00 40.71 3.53
86 87 1.133009 AGGCAGGTCTGGATACCCTAG 60.133 57.143 0.00 0.00 40.71 3.02
87 88 1.413227 GGCAGGTCTGGATACCCTAGT 60.413 57.143 0.00 0.00 40.71 2.57
88 89 2.399580 GCAGGTCTGGATACCCTAGTT 58.600 52.381 0.00 0.00 40.71 2.24
89 90 2.365941 GCAGGTCTGGATACCCTAGTTC 59.634 54.545 0.00 0.00 40.71 3.01
90 91 2.966516 CAGGTCTGGATACCCTAGTTCC 59.033 54.545 0.00 0.00 40.71 3.62
91 92 2.090663 AGGTCTGGATACCCTAGTTCCC 60.091 54.545 0.00 0.00 40.71 3.97
92 93 2.359994 GGTCTGGATACCCTAGTTCCCA 60.360 54.545 0.00 0.00 33.02 4.37
93 94 2.966516 GTCTGGATACCCTAGTTCCCAG 59.033 54.545 0.00 0.00 41.78 4.45
94 95 2.863238 TCTGGATACCCTAGTTCCCAGA 59.137 50.000 0.00 0.00 44.37 3.86
95 96 3.273886 TCTGGATACCCTAGTTCCCAGAA 59.726 47.826 0.00 0.00 43.99 3.02
96 97 3.381335 TGGATACCCTAGTTCCCAGAAC 58.619 50.000 0.00 0.00 0.00 3.01
97 98 3.246203 TGGATACCCTAGTTCCCAGAACA 60.246 47.826 9.92 0.00 0.00 3.18
98 99 3.134262 GGATACCCTAGTTCCCAGAACAC 59.866 52.174 9.92 0.00 0.00 3.32
99 100 1.359168 ACCCTAGTTCCCAGAACACC 58.641 55.000 9.92 0.00 0.00 4.16
102 103 1.831736 CCTAGTTCCCAGAACACCGAT 59.168 52.381 9.92 0.00 0.00 4.18
108 109 1.837439 TCCCAGAACACCGATAGCAAT 59.163 47.619 0.00 0.00 0.00 3.56
208 209 1.279271 CCCTTCTCCAAATCGACACCT 59.721 52.381 0.00 0.00 0.00 4.00
216 217 2.355197 CAAATCGACACCTACATGGCA 58.645 47.619 0.00 0.00 40.22 4.92
218 219 2.245159 ATCGACACCTACATGGCATG 57.755 50.000 25.31 25.31 40.22 4.06
252 265 0.537188 GAAGATGAGCGAGTCCCCAA 59.463 55.000 0.00 0.00 0.00 4.12
334 348 1.676384 GGCCTCTTGCAGACACTCT 59.324 57.895 0.00 0.00 43.89 3.24
340 354 4.094146 GCCTCTTGCAGACACTCTTTATTC 59.906 45.833 0.00 0.00 40.77 1.75
342 356 5.227569 TCTTGCAGACACTCTTTATTCCA 57.772 39.130 0.00 0.00 0.00 3.53
360 374 1.202463 CCACTTTCGGATCTCTCGCAT 60.202 52.381 0.00 0.00 0.00 4.73
361 375 1.857217 CACTTTCGGATCTCTCGCATG 59.143 52.381 0.00 0.00 0.00 4.06
364 378 1.318576 TTCGGATCTCTCGCATGCTA 58.681 50.000 17.13 3.43 0.00 3.49
366 380 1.681264 TCGGATCTCTCGCATGCTAAA 59.319 47.619 17.13 0.00 0.00 1.85
371 385 4.554292 GATCTCTCGCATGCTAAATCAGA 58.446 43.478 17.13 8.41 0.00 3.27
451 465 4.210746 CAGCGAACATCTAGATTGGACATG 59.789 45.833 1.33 0.00 0.00 3.21
457 471 7.148423 CGAACATCTAGATTGGACATGTGAAAA 60.148 37.037 1.15 0.00 0.00 2.29
507 529 9.906660 TGCAAAATTTACCATGTTCTAAAGTAG 57.093 29.630 0.00 0.00 0.00 2.57
551 574 7.854934 AACTACTATCAGAAAATATCGTCGC 57.145 36.000 0.00 0.00 0.00 5.19
558 581 3.242016 CAGAAAATATCGTCGCGCTACAA 59.758 43.478 12.90 0.00 0.00 2.41
568 591 5.897133 TCGTCGCGCTACAATAAATAATTC 58.103 37.500 12.90 0.00 0.00 2.17
573 596 8.433126 GTCGCGCTACAATAAATAATTCTATGT 58.567 33.333 7.26 0.00 0.00 2.29
599 622 2.416260 GGGATCCGACGTACCTGC 59.584 66.667 5.45 0.00 0.00 4.85
602 625 3.480225 GATCCGACGTACCTGCGGG 62.480 68.421 11.02 11.02 44.87 6.13
606 629 2.125793 GACGTACCTGCGGGTTCC 60.126 66.667 25.37 13.21 44.73 3.62
615 638 1.328279 CTGCGGGTTCCTTTCCTTTT 58.672 50.000 0.00 0.00 0.00 2.27
638 661 8.996024 TTTCTTTTCTTTTTAGGACAACAAGG 57.004 30.769 0.00 0.00 0.00 3.61
732 755 1.016130 CGGGCGCAGATATAAGCAGG 61.016 60.000 10.83 0.00 0.00 4.85
733 756 0.674895 GGGCGCAGATATAAGCAGGG 60.675 60.000 10.83 0.00 0.00 4.45
734 757 1.301677 GGCGCAGATATAAGCAGGGC 61.302 60.000 10.83 0.00 37.42 5.19
735 758 1.630244 GCGCAGATATAAGCAGGGCG 61.630 60.000 0.30 0.00 45.15 6.13
736 759 1.630244 CGCAGATATAAGCAGGGCGC 61.630 60.000 0.00 0.00 42.91 6.53
737 760 0.603707 GCAGATATAAGCAGGGCGCA 60.604 55.000 10.83 0.00 46.13 6.09
738 761 1.436600 CAGATATAAGCAGGGCGCAG 58.563 55.000 10.83 0.00 46.13 5.18
739 762 1.001293 CAGATATAAGCAGGGCGCAGA 59.999 52.381 10.83 0.00 46.13 4.26
740 763 1.905215 AGATATAAGCAGGGCGCAGAT 59.095 47.619 10.83 0.00 46.13 2.90
741 764 3.099905 AGATATAAGCAGGGCGCAGATA 58.900 45.455 10.83 0.00 46.13 1.98
742 765 3.708631 AGATATAAGCAGGGCGCAGATAT 59.291 43.478 10.83 0.80 46.13 1.63
743 766 4.895889 AGATATAAGCAGGGCGCAGATATA 59.104 41.667 10.83 3.57 46.13 0.86
744 767 3.981071 ATAAGCAGGGCGCAGATATAA 57.019 42.857 10.83 0.00 46.13 0.98
745 768 2.175878 AAGCAGGGCGCAGATATAAG 57.824 50.000 10.83 0.00 46.13 1.73
746 769 0.321122 AGCAGGGCGCAGATATAAGC 60.321 55.000 10.83 0.93 46.13 3.09
747 770 0.603707 GCAGGGCGCAGATATAAGCA 60.604 55.000 10.83 0.00 41.79 3.91
748 771 1.436600 CAGGGCGCAGATATAAGCAG 58.563 55.000 10.83 0.00 0.00 4.24
759 782 1.734388 TATAAGCAGAGCGCGGCTGA 61.734 55.000 29.20 20.57 44.95 4.26
760 783 2.374830 ATAAGCAGAGCGCGGCTGAT 62.375 55.000 29.20 23.23 44.95 2.90
764 787 1.519234 CAGAGCGCGGCTGATGTTA 60.519 57.895 23.31 0.00 39.88 2.41
765 788 1.227089 AGAGCGCGGCTGATGTTAG 60.227 57.895 8.83 0.00 39.88 2.34
766 789 2.202932 AGCGCGGCTGATGTTAGG 60.203 61.111 8.83 0.00 37.57 2.69
767 790 2.202878 GCGCGGCTGATGTTAGGA 60.203 61.111 8.83 0.00 0.00 2.94
768 791 2.526120 GCGCGGCTGATGTTAGGAC 61.526 63.158 8.83 0.00 0.00 3.85
769 792 2.230940 CGCGGCTGATGTTAGGACG 61.231 63.158 0.00 0.00 0.00 4.79
770 793 1.153628 GCGGCTGATGTTAGGACGT 60.154 57.895 0.00 0.00 0.00 4.34
771 794 0.101759 GCGGCTGATGTTAGGACGTA 59.898 55.000 0.00 0.00 0.00 3.57
772 795 1.836383 CGGCTGATGTTAGGACGTAC 58.164 55.000 0.00 0.00 0.00 3.67
773 796 1.404391 CGGCTGATGTTAGGACGTACT 59.596 52.381 5.18 5.18 0.00 2.73
774 797 2.541178 CGGCTGATGTTAGGACGTACTC 60.541 54.545 1.79 0.00 0.00 2.59
775 798 2.223758 GGCTGATGTTAGGACGTACTCC 60.224 54.545 1.79 0.00 39.81 3.85
776 799 2.541178 GCTGATGTTAGGACGTACTCCG 60.541 54.545 1.79 0.00 45.10 4.63
839 876 1.077089 GTGTTCCGAGCTACGAAGGC 61.077 60.000 7.07 0.00 45.77 4.35
861 898 2.818274 CGAGCCGCCCCTACAAAC 60.818 66.667 0.00 0.00 0.00 2.93
907 944 0.544120 GATTCCCCAAGCCACCCAAA 60.544 55.000 0.00 0.00 0.00 3.28
908 945 0.104725 ATTCCCCAAGCCACCCAAAA 60.105 50.000 0.00 0.00 0.00 2.44
909 946 0.326618 TTCCCCAAGCCACCCAAAAA 60.327 50.000 0.00 0.00 0.00 1.94
918 955 5.068855 CCAAGCCACCCAAAAATTTTGATTT 59.931 36.000 18.98 0.95 0.00 2.17
955 992 0.389166 GAAGGCCGTCTGTCTGTCTG 60.389 60.000 11.87 0.00 0.00 3.51
956 993 1.115930 AAGGCCGTCTGTCTGTCTGT 61.116 55.000 0.00 0.00 0.00 3.41
957 994 1.080434 GGCCGTCTGTCTGTCTGTC 60.080 63.158 0.00 0.00 0.00 3.51
958 995 1.528292 GGCCGTCTGTCTGTCTGTCT 61.528 60.000 0.00 0.00 0.00 3.41
959 996 0.387878 GCCGTCTGTCTGTCTGTCTG 60.388 60.000 0.00 0.00 0.00 3.51
960 997 0.955178 CCGTCTGTCTGTCTGTCTGT 59.045 55.000 0.00 0.00 0.00 3.41
961 998 1.068885 CCGTCTGTCTGTCTGTCTGTC 60.069 57.143 0.00 0.00 0.00 3.51
962 999 1.876799 CGTCTGTCTGTCTGTCTGTCT 59.123 52.381 0.00 0.00 0.00 3.41
963 1000 2.350293 CGTCTGTCTGTCTGTCTGTCTG 60.350 54.545 0.00 0.00 0.00 3.51
964 1001 2.621055 GTCTGTCTGTCTGTCTGTCTGT 59.379 50.000 0.00 0.00 0.00 3.41
965 1002 2.881513 TCTGTCTGTCTGTCTGTCTGTC 59.118 50.000 0.00 0.00 0.00 3.51
966 1003 2.884012 CTGTCTGTCTGTCTGTCTGTCT 59.116 50.000 0.00 0.00 0.00 3.41
1342 1379 4.960938 TGTGGCTTGAGCATAATACTAGG 58.039 43.478 5.24 0.00 44.36 3.02
1343 1380 3.748568 GTGGCTTGAGCATAATACTAGGC 59.251 47.826 5.24 0.00 44.36 3.93
1421 1460 4.453480 TCAAGGGGAAAACTGTGATTCT 57.547 40.909 6.56 0.00 0.00 2.40
1426 1465 4.768968 AGGGGAAAACTGTGATTCTGAATG 59.231 41.667 7.78 0.00 0.00 2.67
1469 1508 5.336213 CCTGTGTTTGCTTTCATGCTTATCT 60.336 40.000 0.00 0.00 0.00 1.98
1470 1509 5.702865 TGTGTTTGCTTTCATGCTTATCTC 58.297 37.500 0.00 0.00 0.00 2.75
1508 1547 1.334869 CCTTGGTGGATAAGAATGCGC 59.665 52.381 0.00 0.00 38.35 6.09
1511 1550 0.947244 GGTGGATAAGAATGCGCTGG 59.053 55.000 9.73 0.00 34.62 4.85
1568 1607 6.105397 TCTCAACTGTAAATACCTCGGTTT 57.895 37.500 0.00 0.00 0.00 3.27
1685 1734 6.599638 GGAAGAGAAGGCAATATTAACACTGT 59.400 38.462 0.00 0.00 0.00 3.55
1857 1906 7.362056 GCATGCTCATTTATATCCCGTGTAATT 60.362 37.037 11.37 0.00 0.00 1.40
2200 2250 0.321564 TGCGATGCAGGTAAAGCAGT 60.322 50.000 0.00 0.00 46.36 4.40
2284 2356 9.507280 CTGCAAAAATGTCTTATATTGTGGTAG 57.493 33.333 0.00 0.00 0.00 3.18
2299 2371 3.722627 TGTGGTAGATAGCTACTCCCTCT 59.277 47.826 17.18 0.00 45.10 3.69
2304 2376 6.117488 GGTAGATAGCTACTCCCTCTGTATC 58.883 48.000 17.18 0.00 45.10 2.24
2355 2427 7.623268 AATTGAACTGCAAAAACGTCTTATC 57.377 32.000 0.00 0.00 40.48 1.75
2362 2436 6.073222 ACTGCAAAAACGTCTTATCTTGGTAG 60.073 38.462 0.00 0.00 0.00 3.18
2366 2440 7.095355 GCAAAAACGTCTTATCTTGGTAGAGAA 60.095 37.037 0.00 0.00 32.92 2.87
2453 2533 5.470777 TGTTTTCCCTTTTATCGTACTGGTG 59.529 40.000 0.00 0.00 0.00 4.17
2457 2537 5.667466 TCCCTTTTATCGTACTGGTGAATC 58.333 41.667 0.00 0.00 0.00 2.52
2458 2538 4.814771 CCCTTTTATCGTACTGGTGAATCC 59.185 45.833 0.00 0.00 0.00 3.01
2459 2539 5.396436 CCCTTTTATCGTACTGGTGAATCCT 60.396 44.000 0.00 0.00 37.07 3.24
2460 2540 5.523916 CCTTTTATCGTACTGGTGAATCCTG 59.476 44.000 0.00 0.00 40.38 3.86
2461 2541 5.925506 TTTATCGTACTGGTGAATCCTGA 57.074 39.130 0.00 0.00 38.33 3.86
2462 2542 5.925506 TTATCGTACTGGTGAATCCTGAA 57.074 39.130 0.00 0.00 38.33 3.02
2463 2543 4.819105 ATCGTACTGGTGAATCCTGAAA 57.181 40.909 0.00 0.00 38.33 2.69
2464 2544 4.610605 TCGTACTGGTGAATCCTGAAAA 57.389 40.909 0.00 0.00 38.33 2.29
2465 2545 5.160607 TCGTACTGGTGAATCCTGAAAAT 57.839 39.130 0.00 0.00 38.33 1.82
2466 2546 5.556915 TCGTACTGGTGAATCCTGAAAATT 58.443 37.500 0.00 0.00 38.33 1.82
2467 2547 6.001460 TCGTACTGGTGAATCCTGAAAATTT 58.999 36.000 0.00 0.00 38.33 1.82
2468 2548 7.162761 TCGTACTGGTGAATCCTGAAAATTTA 58.837 34.615 0.00 0.00 38.33 1.40
2469 2549 7.827236 TCGTACTGGTGAATCCTGAAAATTTAT 59.173 33.333 0.00 0.00 38.33 1.40
2470 2550 8.458843 CGTACTGGTGAATCCTGAAAATTTATT 58.541 33.333 0.00 0.00 38.33 1.40
2471 2551 9.788960 GTACTGGTGAATCCTGAAAATTTATTC 57.211 33.333 0.00 0.00 38.33 1.75
2574 2695 5.088739 GTCATGCATTTCGAGGTTTAACTG 58.911 41.667 0.00 0.00 0.00 3.16
2576 2697 5.935206 TCATGCATTTCGAGGTTTAACTGTA 59.065 36.000 0.00 0.00 0.00 2.74
2593 2714 4.766375 ACTGTAACCATCAATTAGACCGG 58.234 43.478 0.00 0.00 0.00 5.28
2640 2761 9.784680 CTTATCTGCAATGGAAATTATAGCATC 57.215 33.333 0.00 0.00 0.00 3.91
2711 2844 3.067833 GTTTTGTCAGAGGGAGTAGTGC 58.932 50.000 0.00 0.00 0.00 4.40
2801 2935 8.739039 TCATTTATTGTAGTCTTTGATGGTTGG 58.261 33.333 0.00 0.00 0.00 3.77
2872 3007 6.026947 TCTTCTCACTTAACTAACTGCTCC 57.973 41.667 0.00 0.00 0.00 4.70
2988 3126 6.934083 GGTATTGTTGTGGTTGAATCCAAATT 59.066 34.615 0.00 0.00 39.34 1.82
3029 3167 4.764823 TCAAAGTTATTCATTGCGGGACTT 59.235 37.500 0.00 0.00 0.00 3.01
3044 3182 1.541588 GGACTTTCATTTTCCGCTGCT 59.458 47.619 0.00 0.00 0.00 4.24
3132 3272 8.763049 TCACTTAGATCATGTTTACAGTCAAG 57.237 34.615 0.00 0.00 0.00 3.02
3202 3342 6.899075 TGGTACTGTAGACTATACCCATTTGT 59.101 38.462 7.88 0.00 36.95 2.83
3469 3610 7.470079 CAAGTCATATGGTTCATTTCTCACTG 58.530 38.462 2.13 0.00 0.00 3.66
3596 3737 2.224079 CGTATGTGTGACTTTTGCAGCT 59.776 45.455 0.00 0.00 0.00 4.24
3842 3994 2.886523 AGTTGCTGCAAACATAGCTGAA 59.113 40.909 17.80 0.00 40.52 3.02
3864 4016 2.882137 TGCGACCCCAAGACTTAAAAAG 59.118 45.455 0.00 0.00 0.00 2.27
3882 4034 0.692419 AGGGCTGGTCTATGGTCTGG 60.692 60.000 0.00 0.00 0.00 3.86
3926 4088 4.970662 ATCTACGCGTGAACTTACCTTA 57.029 40.909 24.59 0.00 0.00 2.69
3934 4096 4.751060 CGTGAACTTACCTTATGTAGCCA 58.249 43.478 0.00 0.00 0.00 4.75
3943 4105 7.179694 ACTTACCTTATGTAGCCACTAACTTGA 59.820 37.037 0.00 0.00 0.00 3.02
4076 4244 8.245701 TGAAAAACACAAAGCTTTATTCGTTT 57.754 26.923 12.25 14.63 0.00 3.60
4094 4262 7.763172 TTCGTTTGAAATAACAGTTTGCATT 57.237 28.000 0.00 0.00 0.00 3.56
4110 4278 4.323569 TGCATTGTTTATGAGGGGGTAA 57.676 40.909 0.00 0.00 36.26 2.85
4137 4355 7.443259 TTTCGCTTAAAGCAACCTTATTAGT 57.557 32.000 0.00 0.00 42.58 2.24
4169 4389 5.344207 ACAATGTTTGAAAGTAGCGAGAC 57.656 39.130 0.00 0.00 0.00 3.36
4175 4395 4.703899 TTGAAAGTAGCGAGACGAAAAC 57.296 40.909 0.00 0.00 0.00 2.43
4221 4441 1.447317 AAAAGCAGTCACCACCGCTG 61.447 55.000 0.00 0.00 34.26 5.18
4284 4588 9.931210 ATTATCAAAGTTAATAACTAAGCGTGC 57.069 29.630 6.04 0.00 41.91 5.34
4285 4589 6.788684 TCAAAGTTAATAACTAAGCGTGCA 57.211 33.333 6.04 0.00 41.91 4.57
4286 4590 7.192148 TCAAAGTTAATAACTAAGCGTGCAA 57.808 32.000 6.04 0.00 41.91 4.08
4287 4591 7.295201 TCAAAGTTAATAACTAAGCGTGCAAG 58.705 34.615 6.04 0.00 41.91 4.01
4288 4592 6.796705 AAGTTAATAACTAAGCGTGCAAGT 57.203 33.333 6.04 0.00 41.91 3.16
4289 4593 6.796705 AGTTAATAACTAAGCGTGCAAGTT 57.203 33.333 3.48 14.37 40.69 2.66
4290 4594 7.894376 AGTTAATAACTAAGCGTGCAAGTTA 57.106 32.000 16.87 16.87 40.69 2.24
4291 4595 8.488651 AGTTAATAACTAAGCGTGCAAGTTAT 57.511 30.769 18.90 18.90 44.38 1.89
4292 4596 9.590451 AGTTAATAACTAAGCGTGCAAGTTATA 57.410 29.630 22.20 12.15 42.65 0.98
4293 4597 9.845305 GTTAATAACTAAGCGTGCAAGTTATAG 57.155 33.333 22.20 11.83 42.65 1.31
4294 4598 7.478520 AATAACTAAGCGTGCAAGTTATAGG 57.521 36.000 22.20 0.61 42.65 2.57
4295 4599 3.195661 ACTAAGCGTGCAAGTTATAGGC 58.804 45.455 0.59 0.00 0.00 3.93
4296 4600 1.379527 AAGCGTGCAAGTTATAGGCC 58.620 50.000 0.00 0.00 0.00 5.19
4297 4601 0.251916 AGCGTGCAAGTTATAGGCCA 59.748 50.000 5.01 0.00 0.00 5.36
4298 4602 1.091537 GCGTGCAAGTTATAGGCCAA 58.908 50.000 5.01 0.00 0.00 4.52
4299 4603 1.676006 GCGTGCAAGTTATAGGCCAAT 59.324 47.619 5.01 0.00 0.00 3.16
4300 4604 2.875933 GCGTGCAAGTTATAGGCCAATA 59.124 45.455 5.01 0.00 0.00 1.90
4301 4605 3.303791 GCGTGCAAGTTATAGGCCAATAC 60.304 47.826 5.01 0.00 0.00 1.89
4302 4606 4.127171 CGTGCAAGTTATAGGCCAATACT 58.873 43.478 5.01 0.00 0.00 2.12
4303 4607 4.574828 CGTGCAAGTTATAGGCCAATACTT 59.425 41.667 5.01 6.12 0.00 2.24
4304 4608 5.756347 CGTGCAAGTTATAGGCCAATACTTA 59.244 40.000 5.01 0.00 0.00 2.24
4305 4609 6.073765 CGTGCAAGTTATAGGCCAATACTTAG 60.074 42.308 5.01 5.56 0.00 2.18
4306 4610 6.990349 GTGCAAGTTATAGGCCAATACTTAGA 59.010 38.462 5.01 0.00 0.00 2.10
4307 4611 7.171678 GTGCAAGTTATAGGCCAATACTTAGAG 59.828 40.741 5.01 0.00 0.00 2.43
4308 4612 6.147985 GCAAGTTATAGGCCAATACTTAGAGC 59.852 42.308 5.01 5.46 0.00 4.09
4309 4613 6.361768 AGTTATAGGCCAATACTTAGAGCC 57.638 41.667 5.01 0.00 44.20 4.70
4310 4614 5.844516 AGTTATAGGCCAATACTTAGAGCCA 59.155 40.000 5.01 0.00 46.35 4.75
4311 4615 6.329197 AGTTATAGGCCAATACTTAGAGCCAA 59.671 38.462 5.01 0.00 46.35 4.52
4312 4616 3.567478 AGGCCAATACTTAGAGCCAAG 57.433 47.619 5.01 0.00 46.35 3.61
4313 4617 2.173569 AGGCCAATACTTAGAGCCAAGG 59.826 50.000 5.01 0.00 46.35 3.61
4314 4618 1.950216 GCCAATACTTAGAGCCAAGGC 59.050 52.381 2.02 2.02 42.33 4.35
4324 4628 3.435186 GCCAAGGCTTCGGCTGTC 61.435 66.667 24.36 5.01 45.29 3.51
4325 4629 2.032528 CCAAGGCTTCGGCTGTCA 59.967 61.111 0.00 0.00 38.81 3.58
4326 4630 2.037136 CCAAGGCTTCGGCTGTCAG 61.037 63.158 0.00 0.00 38.81 3.51
4327 4631 2.037136 CAAGGCTTCGGCTGTCAGG 61.037 63.158 0.00 0.00 38.81 3.86
4328 4632 2.217038 AAGGCTTCGGCTGTCAGGA 61.217 57.895 1.14 0.00 38.81 3.86
4329 4633 1.557269 AAGGCTTCGGCTGTCAGGAT 61.557 55.000 1.14 0.00 38.81 3.24
4330 4634 1.817099 GGCTTCGGCTGTCAGGATG 60.817 63.158 1.14 0.00 41.44 3.51
4331 4635 1.078848 GCTTCGGCTGTCAGGATGT 60.079 57.895 1.14 0.00 36.07 3.06
4332 4636 1.086634 GCTTCGGCTGTCAGGATGTC 61.087 60.000 1.14 0.00 36.07 3.06
4333 4637 0.460987 CTTCGGCTGTCAGGATGTCC 60.461 60.000 1.14 0.00 37.40 4.02
4334 4638 1.191489 TTCGGCTGTCAGGATGTCCA 61.191 55.000 1.14 0.00 38.89 4.02
4366 4670 6.530019 TCAATTTTCCAATTTCCTCTAGCC 57.470 37.500 0.00 0.00 29.41 3.93
4372 4676 4.526970 TCCAATTTCCTCTAGCCATGAAC 58.473 43.478 0.00 0.00 0.00 3.18
4373 4677 3.633986 CCAATTTCCTCTAGCCATGAACC 59.366 47.826 0.00 0.00 0.00 3.62
4384 4688 1.683385 GCCATGAACCTGCCTTTATCC 59.317 52.381 0.00 0.00 0.00 2.59
4409 4714 6.591935 TCTCTTAGGACAGCTCAAAAGAAAA 58.408 36.000 0.00 0.00 0.00 2.29
4410 4715 6.708054 TCTCTTAGGACAGCTCAAAAGAAAAG 59.292 38.462 0.00 0.00 0.00 2.27
4413 4718 5.921962 AGGACAGCTCAAAAGAAAAGTTT 57.078 34.783 0.00 0.00 0.00 2.66
4475 4784 8.767085 ACAAAATGTTAAATCATGTGCAGAAAG 58.233 29.630 0.00 0.00 0.00 2.62
4492 5742 9.237846 GTGCAGAAAGGTTAAATAATCTTATGC 57.762 33.333 19.44 19.44 42.96 3.14
4493 5743 8.128582 TGCAGAAAGGTTAAATAATCTTATGCG 58.871 33.333 20.16 6.31 44.16 4.73
4500 5750 9.248291 AGGTTAAATAATCTTATGCGCATTTTG 57.752 29.630 30.42 18.12 0.00 2.44
4532 5782 9.907229 TTTTTCAAATTTGTGTACCCCTAATTT 57.093 25.926 17.47 8.12 0.00 1.82
4533 5783 9.907229 TTTTCAAATTTGTGTACCCCTAATTTT 57.093 25.926 17.47 0.48 0.00 1.82
4534 5784 9.907229 TTTCAAATTTGTGTACCCCTAATTTTT 57.093 25.926 17.47 0.00 0.00 1.94
4584 5834 9.398538 CAGTAGAGGAGTACTAGTCAGTTTTAT 57.601 37.037 0.00 0.00 36.14 1.40
4589 5839 5.747675 GGAGTACTAGTCAGTTTTATTCGGC 59.252 44.000 0.00 0.00 36.14 5.54
4598 5848 4.932799 TCAGTTTTATTCGGCTTTCATCGA 59.067 37.500 0.00 0.00 0.00 3.59
4672 5923 3.912907 CCTACCGCCAGGCTACCG 61.913 72.222 10.54 0.00 42.76 4.02
4676 5927 4.077184 CCGCCAGGCTACCGAACA 62.077 66.667 10.54 0.00 0.00 3.18
4677 5928 2.509336 CGCCAGGCTACCGAACAG 60.509 66.667 10.54 0.00 0.00 3.16
4678 5929 2.820037 GCCAGGCTACCGAACAGC 60.820 66.667 3.29 0.00 38.35 4.40
4679 5930 2.662596 CCAGGCTACCGAACAGCA 59.337 61.111 0.00 0.00 40.95 4.41
4680 5931 1.221840 CCAGGCTACCGAACAGCAT 59.778 57.895 0.00 0.00 40.95 3.79
4681 5932 0.464036 CCAGGCTACCGAACAGCATA 59.536 55.000 0.00 0.00 40.95 3.14
4682 5933 1.539065 CCAGGCTACCGAACAGCATAG 60.539 57.143 0.00 0.00 40.95 2.23
4740 5991 0.526739 ACAAAACAAAACTCCGCCGC 60.527 50.000 0.00 0.00 0.00 6.53
4749 6000 4.140599 CTCCGCCGCTGCTCTCTT 62.141 66.667 0.00 0.00 34.43 2.85
4759 6010 1.404047 GCTGCTCTCTTCACCTCTGTC 60.404 57.143 0.00 0.00 0.00 3.51
4761 6012 1.203112 TGCTCTCTTCACCTCTGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
4762 6013 1.204467 GCTCTCTTCACCTCTGTCCTG 59.796 57.143 0.00 0.00 0.00 3.86
4765 6016 1.548269 CTCTTCACCTCTGTCCTGTCC 59.452 57.143 0.00 0.00 0.00 4.02
4766 6017 0.244994 CTTCACCTCTGTCCTGTCCG 59.755 60.000 0.00 0.00 0.00 4.79
4767 6018 0.469331 TTCACCTCTGTCCTGTCCGT 60.469 55.000 0.00 0.00 0.00 4.69
4768 6019 1.179174 TCACCTCTGTCCTGTCCGTG 61.179 60.000 0.00 0.00 0.00 4.94
4769 6020 1.153061 ACCTCTGTCCTGTCCGTGA 59.847 57.895 0.00 0.00 0.00 4.35
4770 6021 0.251832 ACCTCTGTCCTGTCCGTGAT 60.252 55.000 0.00 0.00 0.00 3.06
4771 6022 0.898320 CCTCTGTCCTGTCCGTGATT 59.102 55.000 0.00 0.00 0.00 2.57
4772 6023 1.276421 CCTCTGTCCTGTCCGTGATTT 59.724 52.381 0.00 0.00 0.00 2.17
4773 6024 2.496070 CCTCTGTCCTGTCCGTGATTTA 59.504 50.000 0.00 0.00 0.00 1.40
4774 6025 3.133003 CCTCTGTCCTGTCCGTGATTTAT 59.867 47.826 0.00 0.00 0.00 1.40
4775 6026 4.341235 CCTCTGTCCTGTCCGTGATTTATA 59.659 45.833 0.00 0.00 0.00 0.98
4776 6027 5.258456 TCTGTCCTGTCCGTGATTTATAC 57.742 43.478 0.00 0.00 0.00 1.47
4777 6028 4.707934 TCTGTCCTGTCCGTGATTTATACA 59.292 41.667 0.00 0.00 0.00 2.29
4778 6029 5.186215 TCTGTCCTGTCCGTGATTTATACAA 59.814 40.000 0.00 0.00 0.00 2.41
4779 6030 5.795972 TGTCCTGTCCGTGATTTATACAAA 58.204 37.500 0.00 0.00 0.00 2.83
4780 6031 5.640357 TGTCCTGTCCGTGATTTATACAAAC 59.360 40.000 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.368427 CCATCTTCAGCTTCGGTAAGACA 60.368 47.826 0.00 0.00 34.37 3.41
1 2 3.190874 CCATCTTCAGCTTCGGTAAGAC 58.809 50.000 0.00 0.00 34.37 3.01
2 3 2.168521 CCCATCTTCAGCTTCGGTAAGA 59.831 50.000 0.00 0.00 34.37 2.10
3 4 2.555199 CCCATCTTCAGCTTCGGTAAG 58.445 52.381 0.00 0.00 35.68 2.34
5 6 0.178068 GCCCATCTTCAGCTTCGGTA 59.822 55.000 0.00 0.00 0.00 4.02
7 8 1.821332 GGCCCATCTTCAGCTTCGG 60.821 63.158 0.00 0.00 0.00 4.30
10 11 0.107654 GTACGGCCCATCTTCAGCTT 60.108 55.000 0.00 0.00 0.00 3.74
11 12 1.522569 GTACGGCCCATCTTCAGCT 59.477 57.895 0.00 0.00 0.00 4.24
12 13 1.523938 GGTACGGCCCATCTTCAGC 60.524 63.158 0.00 0.00 0.00 4.26
13 14 0.179073 CTGGTACGGCCCATCTTCAG 60.179 60.000 0.00 0.00 36.04 3.02
14 15 1.622607 CCTGGTACGGCCCATCTTCA 61.623 60.000 0.00 0.00 36.04 3.02
15 16 1.146263 CCTGGTACGGCCCATCTTC 59.854 63.158 0.00 0.00 36.04 2.87
16 17 1.615424 ACCTGGTACGGCCCATCTT 60.615 57.895 0.00 0.00 36.04 2.40
17 18 2.040606 ACCTGGTACGGCCCATCT 59.959 61.111 0.00 0.00 36.04 2.90
18 19 2.504519 GACCTGGTACGGCCCATC 59.495 66.667 0.00 0.00 36.04 3.51
19 20 3.467226 CGACCTGGTACGGCCCAT 61.467 66.667 0.00 0.00 36.04 4.00
21 22 4.139234 GACGACCTGGTACGGCCC 62.139 72.222 18.25 7.49 36.04 5.80
22 23 2.234913 ATTGACGACCTGGTACGGCC 62.235 60.000 17.74 0.00 36.65 6.13
23 24 0.457035 TATTGACGACCTGGTACGGC 59.543 55.000 18.25 16.64 38.09 5.68
24 25 2.019249 TCTATTGACGACCTGGTACGG 58.981 52.381 18.25 6.96 0.00 4.02
25 26 2.541178 GCTCTATTGACGACCTGGTACG 60.541 54.545 0.00 8.20 0.00 3.67
26 27 2.223758 GGCTCTATTGACGACCTGGTAC 60.224 54.545 0.00 0.00 0.00 3.34
27 28 2.029623 GGCTCTATTGACGACCTGGTA 58.970 52.381 0.00 0.00 0.00 3.25
28 29 0.824759 GGCTCTATTGACGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
29 30 0.824109 TGGCTCTATTGACGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
30 31 1.799181 CGTGGCTCTATTGACGACCTG 60.799 57.143 0.00 0.00 33.64 4.00
31 32 0.456221 CGTGGCTCTATTGACGACCT 59.544 55.000 0.00 0.00 33.64 3.85
32 33 1.146358 GCGTGGCTCTATTGACGACC 61.146 60.000 0.00 0.00 33.64 4.79
33 34 1.146358 GGCGTGGCTCTATTGACGAC 61.146 60.000 0.00 0.00 33.64 4.34
34 35 1.141019 GGCGTGGCTCTATTGACGA 59.859 57.895 0.00 0.00 33.64 4.20
35 36 2.230940 CGGCGTGGCTCTATTGACG 61.231 63.158 0.00 0.00 34.93 4.35
36 37 1.153628 ACGGCGTGGCTCTATTGAC 60.154 57.895 13.76 0.00 0.00 3.18
37 38 1.153647 CACGGCGTGGCTCTATTGA 60.154 57.895 31.19 0.00 0.00 2.57
38 39 3.398920 CACGGCGTGGCTCTATTG 58.601 61.111 31.19 2.75 0.00 1.90
59 60 4.340246 CAGACCTGCCTGCCTGCA 62.340 66.667 0.00 0.00 39.37 4.41
61 62 1.340399 TATCCAGACCTGCCTGCCTG 61.340 60.000 0.00 0.00 32.97 4.85
62 63 1.003442 TATCCAGACCTGCCTGCCT 59.997 57.895 0.00 0.00 32.97 4.75
63 64 1.147153 GTATCCAGACCTGCCTGCC 59.853 63.158 0.00 0.00 32.97 4.85
64 65 1.147153 GGTATCCAGACCTGCCTGC 59.853 63.158 0.00 0.00 36.47 4.85
65 66 0.692419 AGGGTATCCAGACCTGCCTG 60.692 60.000 0.00 0.00 39.66 4.85
66 67 0.941963 TAGGGTATCCAGACCTGCCT 59.058 55.000 0.00 0.00 39.66 4.75
67 68 1.343069 CTAGGGTATCCAGACCTGCC 58.657 60.000 0.00 0.00 39.66 4.85
68 69 2.089600 ACTAGGGTATCCAGACCTGC 57.910 55.000 0.00 0.00 39.66 4.85
69 70 2.966516 GGAACTAGGGTATCCAGACCTG 59.033 54.545 0.00 0.00 39.66 4.00
70 71 2.090663 GGGAACTAGGGTATCCAGACCT 60.091 54.545 0.00 0.00 39.66 3.85
71 72 2.327373 GGGAACTAGGGTATCCAGACC 58.673 57.143 0.00 0.38 38.93 3.85
72 73 2.966516 CTGGGAACTAGGGTATCCAGAC 59.033 54.545 11.81 0.00 42.76 3.51
73 74 2.863238 TCTGGGAACTAGGGTATCCAGA 59.137 50.000 14.36 14.36 44.53 3.86
74 75 3.330126 TCTGGGAACTAGGGTATCCAG 57.670 52.381 0.00 11.27 42.14 3.86
75 76 3.246203 TGTTCTGGGAACTAGGGTATCCA 60.246 47.826 10.98 0.00 34.82 3.41
76 77 3.134262 GTGTTCTGGGAACTAGGGTATCC 59.866 52.174 10.98 0.00 0.00 2.59
77 78 3.134262 GGTGTTCTGGGAACTAGGGTATC 59.866 52.174 10.98 0.00 0.00 2.24
78 79 3.113043 GGTGTTCTGGGAACTAGGGTAT 58.887 50.000 10.98 0.00 0.00 2.73
79 80 2.543635 GGTGTTCTGGGAACTAGGGTA 58.456 52.381 10.98 0.00 0.00 3.69
80 81 1.359168 GGTGTTCTGGGAACTAGGGT 58.641 55.000 10.98 0.00 0.00 4.34
81 82 0.249398 CGGTGTTCTGGGAACTAGGG 59.751 60.000 10.98 0.00 0.00 3.53
82 83 1.263356 TCGGTGTTCTGGGAACTAGG 58.737 55.000 10.98 1.92 0.00 3.02
83 84 3.491104 GCTATCGGTGTTCTGGGAACTAG 60.491 52.174 10.98 5.89 0.00 2.57
84 85 2.429610 GCTATCGGTGTTCTGGGAACTA 59.570 50.000 10.98 0.00 0.00 2.24
85 86 1.207329 GCTATCGGTGTTCTGGGAACT 59.793 52.381 10.98 0.00 0.00 3.01
86 87 1.066430 TGCTATCGGTGTTCTGGGAAC 60.066 52.381 3.75 3.75 0.00 3.62
87 88 1.271856 TGCTATCGGTGTTCTGGGAA 58.728 50.000 0.00 0.00 0.00 3.97
88 89 1.271856 TTGCTATCGGTGTTCTGGGA 58.728 50.000 0.00 0.00 0.00 4.37
89 90 1.942657 CATTGCTATCGGTGTTCTGGG 59.057 52.381 0.00 0.00 0.00 4.45
90 91 1.331756 GCATTGCTATCGGTGTTCTGG 59.668 52.381 0.16 0.00 0.00 3.86
91 92 1.331756 GGCATTGCTATCGGTGTTCTG 59.668 52.381 8.82 0.00 0.00 3.02
92 93 1.668419 GGCATTGCTATCGGTGTTCT 58.332 50.000 8.82 0.00 0.00 3.01
93 94 0.304705 CGGCATTGCTATCGGTGTTC 59.695 55.000 8.82 0.00 0.00 3.18
94 95 1.714899 GCGGCATTGCTATCGGTGTT 61.715 55.000 8.82 0.00 0.00 3.32
95 96 2.180204 GCGGCATTGCTATCGGTGT 61.180 57.895 8.82 0.00 0.00 4.16
96 97 2.633657 GCGGCATTGCTATCGGTG 59.366 61.111 8.82 0.00 0.00 4.94
97 98 2.591715 GGCGGCATTGCTATCGGT 60.592 61.111 8.82 0.00 34.52 4.69
98 99 3.357079 GGGCGGCATTGCTATCGG 61.357 66.667 12.47 0.00 34.52 4.18
99 100 2.281070 AGGGCGGCATTGCTATCG 60.281 61.111 12.47 5.03 34.52 2.92
102 103 1.526686 CATGAGGGCGGCATTGCTA 60.527 57.895 12.47 0.00 34.52 3.49
216 217 5.127194 TCATCTTCTTTAGGCGTGTAGACAT 59.873 40.000 0.00 0.00 0.00 3.06
218 219 4.995124 TCATCTTCTTTAGGCGTGTAGAC 58.005 43.478 0.00 0.00 0.00 2.59
266 279 2.044551 CCTCCCCTGCTTGCTTCC 60.045 66.667 0.00 0.00 0.00 3.46
276 289 4.888325 CGGATCCCTGCCTCCCCT 62.888 72.222 6.06 0.00 0.00 4.79
334 348 5.348986 CGAGAGATCCGAAAGTGGAATAAA 58.651 41.667 0.00 0.00 42.46 1.40
340 354 0.173481 TGCGAGAGATCCGAAAGTGG 59.827 55.000 0.00 0.00 0.00 4.00
342 356 1.804372 GCATGCGAGAGATCCGAAAGT 60.804 52.381 0.00 0.00 0.00 2.66
360 374 9.507329 AGAAGAAATAAACAGTCTGATTTAGCA 57.493 29.630 6.91 0.00 0.00 3.49
417 431 1.372128 GTTCGCTGGCAAAAGCTGG 60.372 57.895 0.00 0.00 41.24 4.85
418 432 0.038892 ATGTTCGCTGGCAAAAGCTG 60.039 50.000 0.00 0.00 41.24 4.24
451 465 8.745837 CGGCATGATAAATTTATCTGTTTTCAC 58.254 33.333 29.37 15.31 40.11 3.18
457 471 4.083324 CGGCGGCATGATAAATTTATCTGT 60.083 41.667 29.37 19.35 40.11 3.41
529 552 5.002654 GCGCGACGATATTTTCTGATAGTAG 59.997 44.000 12.10 0.00 0.00 2.57
532 555 3.914966 AGCGCGACGATATTTTCTGATAG 59.085 43.478 12.10 0.00 0.00 2.08
533 556 3.897325 AGCGCGACGATATTTTCTGATA 58.103 40.909 12.10 0.00 0.00 2.15
534 557 2.743938 AGCGCGACGATATTTTCTGAT 58.256 42.857 12.10 0.00 0.00 2.90
543 566 7.539710 AGAATTATTTATTGTAGCGCGACGATA 59.460 33.333 22.27 22.27 0.00 2.92
546 569 5.901509 AGAATTATTTATTGTAGCGCGACG 58.098 37.500 12.10 0.00 0.00 5.12
582 605 2.416260 GCAGGTACGTCGGATCCC 59.584 66.667 6.06 0.00 0.00 3.85
599 622 4.341235 AGAAAAGAAAAGGAAAGGAACCCG 59.659 41.667 0.00 0.00 0.00 5.28
606 629 9.869757 TGTCCTAAAAAGAAAAGAAAAGGAAAG 57.130 29.630 0.00 0.00 33.87 2.62
615 638 7.394923 TGTCCTTGTTGTCCTAAAAAGAAAAGA 59.605 33.333 0.00 0.00 0.00 2.52
638 661 3.552890 GGGGAAACATCAGCTTTTGTGTC 60.553 47.826 7.25 7.25 30.65 3.67
687 710 5.511234 TCTTGGCTAGAATTAGGACGTAC 57.489 43.478 0.00 0.00 0.00 3.67
688 711 5.449588 CGTTCTTGGCTAGAATTAGGACGTA 60.450 44.000 14.22 0.00 44.39 3.57
689 712 4.677250 CGTTCTTGGCTAGAATTAGGACGT 60.677 45.833 14.22 0.00 44.39 4.34
690 713 3.797256 CGTTCTTGGCTAGAATTAGGACG 59.203 47.826 14.22 9.05 44.39 4.79
732 755 1.074752 GCTCTGCTTATATCTGCGCC 58.925 55.000 4.18 0.00 0.00 6.53
733 756 0.712775 CGCTCTGCTTATATCTGCGC 59.287 55.000 0.00 0.00 35.77 6.09
734 757 0.712775 GCGCTCTGCTTATATCTGCG 59.287 55.000 0.00 0.00 43.91 5.18
735 758 0.712775 CGCGCTCTGCTTATATCTGC 59.287 55.000 5.56 0.00 43.27 4.26
736 759 1.344458 CCGCGCTCTGCTTATATCTG 58.656 55.000 5.56 0.00 43.27 2.90
737 760 0.389166 GCCGCGCTCTGCTTATATCT 60.389 55.000 5.56 0.00 43.27 1.98
738 761 0.389166 AGCCGCGCTCTGCTTATATC 60.389 55.000 5.56 0.00 43.27 1.63
739 762 0.668706 CAGCCGCGCTCTGCTTATAT 60.669 55.000 12.43 0.00 43.27 0.86
740 763 1.300156 CAGCCGCGCTCTGCTTATA 60.300 57.895 12.43 0.00 43.27 0.98
741 764 2.374830 ATCAGCCGCGCTCTGCTTAT 62.375 55.000 18.10 11.50 43.27 1.73
742 765 3.081311 ATCAGCCGCGCTCTGCTTA 62.081 57.895 18.10 9.91 43.27 3.09
743 766 4.463879 ATCAGCCGCGCTCTGCTT 62.464 61.111 18.10 8.24 43.27 3.91
746 769 1.485838 CTAACATCAGCCGCGCTCTG 61.486 60.000 17.17 17.17 36.40 3.35
747 770 1.227089 CTAACATCAGCCGCGCTCT 60.227 57.895 5.56 0.00 36.40 4.09
748 771 2.240500 CCTAACATCAGCCGCGCTC 61.241 63.158 5.56 0.00 36.40 5.03
772 795 3.861689 GGTAGTTTTGTAATCCGACGGAG 59.138 47.826 22.99 0.00 34.05 4.63
773 796 3.257873 TGGTAGTTTTGTAATCCGACGGA 59.742 43.478 20.85 20.85 35.55 4.69
774 797 3.587923 TGGTAGTTTTGTAATCCGACGG 58.412 45.455 7.84 7.84 0.00 4.79
775 798 5.050227 TGTTTGGTAGTTTTGTAATCCGACG 60.050 40.000 0.00 0.00 0.00 5.12
776 799 6.138088 GTGTTTGGTAGTTTTGTAATCCGAC 58.862 40.000 0.00 0.00 0.00 4.79
777 800 5.050227 CGTGTTTGGTAGTTTTGTAATCCGA 60.050 40.000 0.00 0.00 0.00 4.55
778 801 5.141568 CGTGTTTGGTAGTTTTGTAATCCG 58.858 41.667 0.00 0.00 0.00 4.18
779 802 6.063640 ACGTGTTTGGTAGTTTTGTAATCC 57.936 37.500 0.00 0.00 0.00 3.01
780 803 5.842327 CGACGTGTTTGGTAGTTTTGTAATC 59.158 40.000 0.00 0.00 0.00 1.75
781 804 5.277442 CCGACGTGTTTGGTAGTTTTGTAAT 60.277 40.000 0.00 0.00 0.00 1.89
782 805 4.033817 CCGACGTGTTTGGTAGTTTTGTAA 59.966 41.667 0.00 0.00 0.00 2.41
907 944 9.423061 CTCGGGTAGAATCAAAAATCAAAATTT 57.577 29.630 0.00 0.00 36.64 1.82
908 945 8.802267 TCTCGGGTAGAATCAAAAATCAAAATT 58.198 29.630 0.00 0.00 0.00 1.82
909 946 8.348285 TCTCGGGTAGAATCAAAAATCAAAAT 57.652 30.769 0.00 0.00 0.00 1.82
918 955 3.451178 CCTTCCTCTCGGGTAGAATCAAA 59.549 47.826 0.00 0.00 34.86 2.69
921 958 1.341852 GCCTTCCTCTCGGGTAGAATC 59.658 57.143 0.00 0.00 34.86 2.52
922 959 1.415200 GCCTTCCTCTCGGGTAGAAT 58.585 55.000 0.00 0.00 34.86 2.40
923 960 0.686769 GGCCTTCCTCTCGGGTAGAA 60.687 60.000 0.00 0.00 34.86 2.10
924 961 1.076192 GGCCTTCCTCTCGGGTAGA 60.076 63.158 0.00 0.00 34.86 2.59
930 967 2.272918 GACAGACGGCCTTCCTCTCG 62.273 65.000 5.45 0.00 0.00 4.04
955 992 2.491693 CCTGGAAGAGAGACAGACAGAC 59.508 54.545 0.00 0.00 34.07 3.51
956 993 2.556336 CCCTGGAAGAGAGACAGACAGA 60.556 54.545 0.00 0.00 34.07 3.41
957 994 1.824230 CCCTGGAAGAGAGACAGACAG 59.176 57.143 0.00 0.00 34.07 3.51
958 995 1.429299 TCCCTGGAAGAGAGACAGACA 59.571 52.381 0.00 0.00 34.07 3.41
959 996 2.223803 TCCCTGGAAGAGAGACAGAC 57.776 55.000 0.00 0.00 34.07 3.51
960 997 2.584965 AGATCCCTGGAAGAGAGACAGA 59.415 50.000 0.00 0.00 34.07 3.41
961 998 2.958355 GAGATCCCTGGAAGAGAGACAG 59.042 54.545 0.00 0.00 34.07 3.51
962 999 2.358721 GGAGATCCCTGGAAGAGAGACA 60.359 54.545 0.00 0.00 34.07 3.41
963 1000 2.316108 GGAGATCCCTGGAAGAGAGAC 58.684 57.143 0.00 0.00 34.07 3.36
964 1001 1.133637 CGGAGATCCCTGGAAGAGAGA 60.134 57.143 0.00 0.00 34.07 3.10
965 1002 1.327303 CGGAGATCCCTGGAAGAGAG 58.673 60.000 0.00 0.00 34.07 3.20
966 1003 0.631753 ACGGAGATCCCTGGAAGAGA 59.368 55.000 0.00 0.00 34.07 3.10
1224 1261 3.317430 CCTGCCAAATATTCTCTTGCCTC 59.683 47.826 0.00 0.00 0.00 4.70
1343 1380 5.396362 CGCATTATCGGCTTTCATACAAAAG 59.604 40.000 0.00 0.00 38.91 2.27
1421 1460 1.199615 TGTCCACCTATCCGCATTCA 58.800 50.000 0.00 0.00 0.00 2.57
1426 1465 0.179081 GTCCTTGTCCACCTATCCGC 60.179 60.000 0.00 0.00 0.00 5.54
1469 1508 6.012508 ACCAAGGTTTTCATGGATTAGAGAGA 60.013 38.462 0.00 0.00 37.66 3.10
1470 1509 6.094603 CACCAAGGTTTTCATGGATTAGAGAG 59.905 42.308 0.00 0.00 37.66 3.20
1511 1550 9.869844 GAATTATATGCATAATTCGGATGCTAC 57.130 33.333 11.13 0.00 46.45 3.58
1546 1585 6.164176 AGAAACCGAGGTATTTACAGTTGAG 58.836 40.000 0.00 0.00 0.00 3.02
1618 1667 2.892852 AGCTGTAAACATTGGCATGTGT 59.107 40.909 0.00 2.34 43.34 3.72
1685 1734 7.093377 TGGATCTGCATATACACATACATAGCA 60.093 37.037 0.00 0.00 0.00 3.49
1857 1906 8.883731 GCAGATTAGCAACAGAGTAAAATTAGA 58.116 33.333 0.00 0.00 0.00 2.10
1948 1997 6.408858 TCGAGTGACAGAAAATAATGAAGC 57.591 37.500 0.00 0.00 0.00 3.86
2238 2310 9.485925 TTTGCAGTTCAAAAGACATCACGTCAT 62.486 37.037 0.00 0.00 42.13 3.06
2239 2311 8.272190 TTTGCAGTTCAAAAGACATCACGTCA 62.272 38.462 0.00 0.00 42.13 4.35
2240 2312 3.002246 TGCAGTTCAAAAGACATCACGTC 59.998 43.478 0.00 0.00 45.77 4.34
2242 2314 3.607422 TGCAGTTCAAAAGACATCACG 57.393 42.857 0.00 0.00 0.00 4.35
2278 2350 4.076394 CAGAGGGAGTAGCTATCTACCAC 58.924 52.174 20.33 15.93 44.87 4.16
2284 2356 6.902771 TTTGATACAGAGGGAGTAGCTATC 57.097 41.667 0.00 0.00 0.00 2.08
2388 2462 6.459435 GGTTTAGGGTCAGATAGTTCTCGTAC 60.459 46.154 0.00 0.00 0.00 3.67
2399 2473 6.151049 ACATGTATAGGGTTTAGGGTCAGAT 58.849 40.000 0.00 0.00 0.00 2.90
2640 2761 6.655003 ACCACCAATATAATTTATCTGCCTCG 59.345 38.462 0.00 0.00 0.00 4.63
2711 2844 9.599866 TGTTTCTGTTATACTGTTCCAGATATG 57.400 33.333 0.00 0.00 35.18 1.78
2739 2872 7.759607 ACTATTTCCCTATTACCTTCATGCAT 58.240 34.615 0.00 0.00 0.00 3.96
2811 2945 4.947388 GGCATGTGAGGGTCAGTATTTAAA 59.053 41.667 0.00 0.00 0.00 1.52
2872 3007 7.750458 AGCACACATAATAAAAACAGATGAACG 59.250 33.333 0.00 0.00 0.00 3.95
2988 3126 5.474532 ACTTTGAAAGCACAAGCATAGATGA 59.525 36.000 4.57 0.00 45.49 2.92
3029 3167 1.167851 CCAGAGCAGCGGAAAATGAA 58.832 50.000 0.00 0.00 0.00 2.57
3044 3182 1.270625 CCGTACAGCAGAAAACCCAGA 60.271 52.381 0.00 0.00 0.00 3.86
3132 3272 2.474816 CGGCTAGCCTCACTGATTAAC 58.525 52.381 30.55 0.34 0.00 2.01
3596 3737 5.670792 ATAAAACGAGGTGGTGACTATGA 57.329 39.130 0.00 0.00 0.00 2.15
3755 3907 0.464554 GCTGCTGAGGGGATGGTAAC 60.465 60.000 0.00 0.00 0.00 2.50
3842 3994 2.871096 TTTAAGTCTTGGGGTCGCAT 57.129 45.000 0.00 0.00 0.00 4.73
3864 4016 0.983378 ACCAGACCATAGACCAGCCC 60.983 60.000 0.00 0.00 0.00 5.19
3882 4034 8.230486 AGATTTCAGATACACATTTTGAACGAC 58.770 33.333 0.00 0.00 0.00 4.34
3926 4088 9.601217 CTTAAACTATCAAGTTAGTGGCTACAT 57.399 33.333 2.02 0.00 45.37 2.29
3934 4096 7.017319 AGCACCCTTAAACTATCAAGTTAGT 57.983 36.000 0.00 0.00 45.37 2.24
3943 4105 8.823220 ACATGAAATTAGCACCCTTAAACTAT 57.177 30.769 0.00 0.00 0.00 2.12
4076 4244 9.755804 TCATAAACAATGCAAACTGTTATTTCA 57.244 25.926 11.29 0.00 34.71 2.69
4094 4262 5.105675 GCGAAATTTTACCCCCTCATAAACA 60.106 40.000 0.00 0.00 0.00 2.83
4110 4278 9.353999 CTAATAAGGTTGCTTTAAGCGAAATTT 57.646 29.630 8.64 6.42 46.26 1.82
4169 4389 9.922305 TTTTTATTTTATTGCTTGTGGTTTTCG 57.078 25.926 0.00 0.00 0.00 3.46
4221 4441 0.749454 AATGGAGGGCGTTCTGATGC 60.749 55.000 0.00 0.00 37.06 3.91
4258 4562 9.931210 GCACGCTTAGTTATTAACTTTGATAAT 57.069 29.630 14.00 0.00 42.81 1.28
4259 4563 8.937884 TGCACGCTTAGTTATTAACTTTGATAA 58.062 29.630 14.00 2.16 42.81 1.75
4260 4564 8.481974 TGCACGCTTAGTTATTAACTTTGATA 57.518 30.769 14.00 0.00 42.81 2.15
4261 4565 7.372451 TGCACGCTTAGTTATTAACTTTGAT 57.628 32.000 14.00 0.00 42.81 2.57
4262 4566 6.788684 TGCACGCTTAGTTATTAACTTTGA 57.211 33.333 14.00 1.63 42.81 2.69
4263 4567 7.075741 ACTTGCACGCTTAGTTATTAACTTTG 58.924 34.615 14.00 8.71 42.81 2.77
4264 4568 7.198306 ACTTGCACGCTTAGTTATTAACTTT 57.802 32.000 14.00 0.00 42.81 2.66
4265 4569 6.796705 ACTTGCACGCTTAGTTATTAACTT 57.203 33.333 14.00 0.07 42.81 2.66
4266 4570 6.796705 AACTTGCACGCTTAGTTATTAACT 57.203 33.333 13.36 13.36 45.40 2.24
4267 4571 9.845305 CTATAACTTGCACGCTTAGTTATTAAC 57.155 33.333 20.29 0.00 40.40 2.01
4268 4572 9.037737 CCTATAACTTGCACGCTTAGTTATTAA 57.962 33.333 20.29 7.79 40.40 1.40
4269 4573 7.170320 GCCTATAACTTGCACGCTTAGTTATTA 59.830 37.037 20.29 9.79 40.40 0.98
4270 4574 6.018180 GCCTATAACTTGCACGCTTAGTTATT 60.018 38.462 20.29 9.32 40.40 1.40
4271 4575 5.465724 GCCTATAACTTGCACGCTTAGTTAT 59.534 40.000 19.44 19.44 43.65 1.89
4272 4576 4.807304 GCCTATAACTTGCACGCTTAGTTA 59.193 41.667 9.70 9.70 38.36 2.24
4273 4577 3.621715 GCCTATAACTTGCACGCTTAGTT 59.378 43.478 6.04 6.04 36.23 2.24
4274 4578 3.195661 GCCTATAACTTGCACGCTTAGT 58.804 45.455 0.00 0.00 0.00 2.24
4275 4579 2.544267 GGCCTATAACTTGCACGCTTAG 59.456 50.000 0.00 0.00 0.00 2.18
4276 4580 2.093394 TGGCCTATAACTTGCACGCTTA 60.093 45.455 3.32 0.00 0.00 3.09
4277 4581 1.339631 TGGCCTATAACTTGCACGCTT 60.340 47.619 3.32 0.00 0.00 4.68
4278 4582 0.251916 TGGCCTATAACTTGCACGCT 59.748 50.000 3.32 0.00 0.00 5.07
4279 4583 1.091537 TTGGCCTATAACTTGCACGC 58.908 50.000 3.32 0.00 0.00 5.34
4280 4584 4.127171 AGTATTGGCCTATAACTTGCACG 58.873 43.478 8.56 0.00 0.00 5.34
4281 4585 6.990349 TCTAAGTATTGGCCTATAACTTGCAC 59.010 38.462 20.89 8.35 0.00 4.57
4282 4586 7.131907 TCTAAGTATTGGCCTATAACTTGCA 57.868 36.000 20.89 11.39 0.00 4.08
4283 4587 6.147985 GCTCTAAGTATTGGCCTATAACTTGC 59.852 42.308 20.89 15.71 0.00 4.01
4284 4588 6.651225 GGCTCTAAGTATTGGCCTATAACTTG 59.349 42.308 20.89 14.84 36.88 3.16
4285 4589 6.329197 TGGCTCTAAGTATTGGCCTATAACTT 59.671 38.462 8.56 14.89 39.22 2.66
4286 4590 5.844516 TGGCTCTAAGTATTGGCCTATAACT 59.155 40.000 8.56 6.07 39.22 2.24
4287 4591 6.110411 TGGCTCTAAGTATTGGCCTATAAC 57.890 41.667 8.56 3.99 39.22 1.89
4288 4592 6.239887 CCTTGGCTCTAAGTATTGGCCTATAA 60.240 42.308 8.56 0.00 39.22 0.98
4289 4593 5.248477 CCTTGGCTCTAAGTATTGGCCTATA 59.752 44.000 3.32 2.83 39.22 1.31
4290 4594 4.042187 CCTTGGCTCTAAGTATTGGCCTAT 59.958 45.833 3.32 4.11 39.22 2.57
4291 4595 3.391296 CCTTGGCTCTAAGTATTGGCCTA 59.609 47.826 3.32 0.00 39.22 3.93
4292 4596 2.173569 CCTTGGCTCTAAGTATTGGCCT 59.826 50.000 3.32 0.00 39.22 5.19
4293 4597 2.576615 CCTTGGCTCTAAGTATTGGCC 58.423 52.381 0.00 0.00 39.03 5.36
4294 4598 1.950216 GCCTTGGCTCTAAGTATTGGC 59.050 52.381 4.11 0.00 0.00 4.52
4295 4599 3.567478 AGCCTTGGCTCTAAGTATTGG 57.433 47.619 8.56 0.00 0.00 3.16
4296 4600 3.557595 CGAAGCCTTGGCTCTAAGTATTG 59.442 47.826 15.10 0.00 0.00 1.90
4297 4601 3.432326 CCGAAGCCTTGGCTCTAAGTATT 60.432 47.826 15.10 0.00 0.00 1.89
4298 4602 2.103263 CCGAAGCCTTGGCTCTAAGTAT 59.897 50.000 15.10 0.00 0.00 2.12
4299 4603 1.480954 CCGAAGCCTTGGCTCTAAGTA 59.519 52.381 15.10 0.00 0.00 2.24
4300 4604 0.250513 CCGAAGCCTTGGCTCTAAGT 59.749 55.000 15.10 0.00 0.00 2.24
4301 4605 3.071580 CCGAAGCCTTGGCTCTAAG 57.928 57.895 15.10 6.63 0.00 2.18
4308 4612 2.032528 TGACAGCCGAAGCCTTGG 59.967 61.111 0.00 0.00 41.25 3.61
4309 4613 2.037136 CCTGACAGCCGAAGCCTTG 61.037 63.158 0.00 0.00 41.25 3.61
4310 4614 1.557269 ATCCTGACAGCCGAAGCCTT 61.557 55.000 0.00 0.00 41.25 4.35
4311 4615 1.992277 ATCCTGACAGCCGAAGCCT 60.992 57.895 0.00 0.00 41.25 4.58
4312 4616 1.817099 CATCCTGACAGCCGAAGCC 60.817 63.158 0.00 0.00 41.25 4.35
4313 4617 1.078848 ACATCCTGACAGCCGAAGC 60.079 57.895 0.00 0.00 40.32 3.86
4314 4618 0.460987 GGACATCCTGACAGCCGAAG 60.461 60.000 0.00 0.00 0.00 3.79
4315 4619 1.191489 TGGACATCCTGACAGCCGAA 61.191 55.000 0.00 0.00 36.82 4.30
4316 4620 1.609210 TGGACATCCTGACAGCCGA 60.609 57.895 0.00 0.00 36.82 5.54
4317 4621 1.448540 GTGGACATCCTGACAGCCG 60.449 63.158 0.00 0.00 36.82 5.52
4318 4622 1.448540 CGTGGACATCCTGACAGCC 60.449 63.158 0.00 0.00 36.82 4.85
4319 4623 2.103042 GCGTGGACATCCTGACAGC 61.103 63.158 0.00 0.00 36.82 4.40
4320 4624 1.016130 GTGCGTGGACATCCTGACAG 61.016 60.000 0.00 0.00 36.82 3.51
4321 4625 1.005037 GTGCGTGGACATCCTGACA 60.005 57.895 0.00 0.00 36.82 3.58
4322 4626 1.741770 GGTGCGTGGACATCCTGAC 60.742 63.158 0.00 0.00 36.82 3.51
4323 4627 1.763546 TTGGTGCGTGGACATCCTGA 61.764 55.000 0.00 0.00 36.82 3.86
4324 4628 0.677731 ATTGGTGCGTGGACATCCTG 60.678 55.000 0.00 0.00 36.82 3.86
4325 4629 0.392998 GATTGGTGCGTGGACATCCT 60.393 55.000 0.00 0.00 36.82 3.24
4326 4630 0.676466 TGATTGGTGCGTGGACATCC 60.676 55.000 0.00 0.00 0.00 3.51
4327 4631 1.164411 TTGATTGGTGCGTGGACATC 58.836 50.000 0.00 0.00 0.00 3.06
4328 4632 1.838112 ATTGATTGGTGCGTGGACAT 58.162 45.000 0.00 0.00 0.00 3.06
4329 4633 1.614996 AATTGATTGGTGCGTGGACA 58.385 45.000 0.00 0.00 0.00 4.02
4330 4634 2.723124 AAATTGATTGGTGCGTGGAC 57.277 45.000 0.00 0.00 0.00 4.02
4331 4635 2.029470 GGAAAATTGATTGGTGCGTGGA 60.029 45.455 0.00 0.00 0.00 4.02
4332 4636 2.288702 TGGAAAATTGATTGGTGCGTGG 60.289 45.455 0.00 0.00 0.00 4.94
4333 4637 3.023946 TGGAAAATTGATTGGTGCGTG 57.976 42.857 0.00 0.00 0.00 5.34
4334 4638 3.742433 TTGGAAAATTGATTGGTGCGT 57.258 38.095 0.00 0.00 0.00 5.24
4366 4670 4.133078 GAGAGGATAAAGGCAGGTTCATG 58.867 47.826 0.00 0.00 0.00 3.07
4384 4688 5.398603 TCTTTTGAGCTGTCCTAAGAGAG 57.601 43.478 0.00 0.00 36.48 3.20
4409 4714 8.836959 GTTGAACTTTTCGACTGAATTAAACT 57.163 30.769 0.00 0.00 40.27 2.66
4475 4784 8.487176 CCAAAATGCGCATAAGATTATTTAACC 58.513 33.333 25.61 0.00 0.00 2.85
4534 5784 6.732531 TGTCATGCACACAAATTTGAAAAA 57.267 29.167 24.64 6.51 0.00 1.94
4584 5834 3.659786 TCTCTTTTCGATGAAAGCCGAA 58.340 40.909 4.95 0.00 42.17 4.30
4589 5839 8.856490 TTTCCTTTTTCTCTTTTCGATGAAAG 57.144 30.769 3.61 3.61 37.85 2.62
4672 5923 2.579207 TGGTACGCTCTATGCTGTTC 57.421 50.000 0.00 0.00 40.11 3.18
4676 5927 0.102481 CGGTTGGTACGCTCTATGCT 59.898 55.000 0.00 0.00 40.11 3.79
4677 5928 0.101759 TCGGTTGGTACGCTCTATGC 59.898 55.000 0.00 0.00 38.57 3.14
4678 5929 2.572191 TTCGGTTGGTACGCTCTATG 57.428 50.000 0.00 0.00 0.00 2.23
4679 5930 3.814005 ATTTCGGTTGGTACGCTCTAT 57.186 42.857 0.00 0.00 0.00 1.98
4680 5931 3.598019 AATTTCGGTTGGTACGCTCTA 57.402 42.857 0.00 0.00 0.00 2.43
4681 5932 2.467566 AATTTCGGTTGGTACGCTCT 57.532 45.000 0.00 0.00 0.00 4.09
4682 5933 2.481185 TGAAATTTCGGTTGGTACGCTC 59.519 45.455 13.34 0.00 0.00 5.03
4740 5991 1.204467 GGACAGAGGTGAAGAGAGCAG 59.796 57.143 0.00 0.00 0.00 4.24
4749 6000 1.153061 ACGGACAGGACAGAGGTGA 59.847 57.895 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.