Multiple sequence alignment - TraesCS6A01G259700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G259700 chr6A 100.000 2608 0 0 1 2608 483592595 483595202 0.000000e+00 4817.0
1 TraesCS6A01G259700 chr6A 89.625 347 30 5 1 341 81112002 81111656 1.110000e-118 436.0
2 TraesCS6A01G259700 chr6B 87.130 1251 96 31 1077 2282 517752180 517753410 0.000000e+00 1358.0
3 TraesCS6A01G259700 chr6B 89.922 258 20 4 827 1080 517751834 517752089 6.960000e-86 327.0
4 TraesCS6A01G259700 chr6D 90.267 935 45 17 1082 1992 343134583 343135495 0.000000e+00 1181.0
5 TraesCS6A01G259700 chr6D 92.657 286 17 2 798 1080 343134188 343134472 2.420000e-110 409.0
6 TraesCS6A01G259700 chr3A 90.230 348 26 6 1 341 429318747 429319093 5.120000e-122 448.0
7 TraesCS6A01G259700 chr3A 90.116 344 29 5 1 341 674594278 674593937 2.380000e-120 442.0
8 TraesCS6A01G259700 chr3A 89.884 346 28 6 1 341 739340641 739340298 3.080000e-119 438.0
9 TraesCS6A01G259700 chr3A 78.070 114 25 0 2143 2256 711652353 711652466 3.600000e-09 73.1
10 TraesCS6A01G259700 chr3A 94.872 39 2 0 2045 2083 711201935 711201897 7.790000e-06 62.1
11 TraesCS6A01G259700 chr3A 100.000 30 0 0 2045 2074 111728406 111728377 3.630000e-04 56.5
12 TraesCS6A01G259700 chr5A 89.744 351 26 8 1 341 664802832 664802482 8.570000e-120 440.0
13 TraesCS6A01G259700 chr5A 77.318 604 94 24 2044 2607 320739148 320738548 1.510000e-82 316.0
14 TraesCS6A01G259700 chr5A 76.768 594 96 20 2046 2602 580866654 580866066 7.060000e-76 294.0
15 TraesCS6A01G259700 chr5A 77.491 542 86 19 2096 2602 485864386 485864926 2.540000e-75 292.0
16 TraesCS6A01G259700 chr5A 77.491 542 86 19 2096 2602 485922655 485923195 2.540000e-75 292.0
17 TraesCS6A01G259700 chr7A 89.685 349 28 7 1 341 68889849 68890197 3.080000e-119 438.0
18 TraesCS6A01G259700 chr5D 89.884 346 26 8 1 341 122633152 122632811 1.110000e-118 436.0
19 TraesCS6A01G259700 chr5D 78.987 533 82 15 2100 2606 388065141 388065669 1.160000e-88 337.0
20 TraesCS6A01G259700 chr5D 92.308 52 4 0 2045 2096 483017131 483017182 1.000000e-09 75.0
21 TraesCS6A01G259700 chr5D 88.889 45 4 1 1339 1382 356901570 356901614 1.000000e-03 54.7
22 TraesCS6A01G259700 chr4A 89.685 349 26 6 1 341 457435260 457435606 1.110000e-118 436.0
23 TraesCS6A01G259700 chr4A 89.685 349 26 6 1 341 457436919 457436573 1.110000e-118 436.0
24 TraesCS6A01G259700 chr1D 79.365 567 96 6 2045 2607 280044144 280043595 1.890000e-101 379.0
25 TraesCS6A01G259700 chr7D 79.923 518 81 14 2093 2602 107666562 107666060 2.470000e-95 359.0
26 TraesCS6A01G259700 chr7D 78.428 598 81 24 2050 2607 259299603 259300192 1.920000e-91 346.0
27 TraesCS6A01G259700 chr2D 79.507 527 82 16 2104 2607 201089817 201090340 4.130000e-93 351.0
28 TraesCS6A01G259700 chr2D 79.457 516 78 8 2119 2607 447342558 447343072 8.940000e-90 340.0
29 TraesCS6A01G259700 chr2D 79.325 474 66 15 2160 2606 491946576 491946108 1.170000e-78 303.0
30 TraesCS6A01G259700 chr2D 80.102 392 55 13 2131 2500 76755398 76755788 1.190000e-68 270.0
31 TraesCS6A01G259700 chr3D 78.938 546 87 9 2090 2608 516072895 516073439 1.920000e-91 346.0
32 TraesCS6A01G259700 chr3D 77.174 552 80 17 2100 2607 571003099 571003648 1.980000e-71 279.0
33 TraesCS6A01G259700 chr1A 77.990 577 100 14 2045 2595 568128328 568128903 1.160000e-88 337.0
34 TraesCS6A01G259700 chr4D 77.798 545 83 16 2093 2602 62104571 62105112 4.220000e-78 302.0
35 TraesCS6A01G259700 chr2A 78.357 499 77 13 2138 2607 733450578 733450082 7.060000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G259700 chr6A 483592595 483595202 2607 False 4817.0 4817 100.000 1 2608 1 chr6A.!!$F1 2607
1 TraesCS6A01G259700 chr6B 517751834 517753410 1576 False 842.5 1358 88.526 827 2282 2 chr6B.!!$F1 1455
2 TraesCS6A01G259700 chr6D 343134188 343135495 1307 False 795.0 1181 91.462 798 1992 2 chr6D.!!$F1 1194
3 TraesCS6A01G259700 chr5A 320738548 320739148 600 True 316.0 316 77.318 2044 2607 1 chr5A.!!$R1 563
4 TraesCS6A01G259700 chr5A 580866066 580866654 588 True 294.0 294 76.768 2046 2602 1 chr5A.!!$R2 556
5 TraesCS6A01G259700 chr5A 485864386 485864926 540 False 292.0 292 77.491 2096 2602 1 chr5A.!!$F1 506
6 TraesCS6A01G259700 chr5A 485922655 485923195 540 False 292.0 292 77.491 2096 2602 1 chr5A.!!$F2 506
7 TraesCS6A01G259700 chr5D 388065141 388065669 528 False 337.0 337 78.987 2100 2606 1 chr5D.!!$F2 506
8 TraesCS6A01G259700 chr1D 280043595 280044144 549 True 379.0 379 79.365 2045 2607 1 chr1D.!!$R1 562
9 TraesCS6A01G259700 chr7D 107666060 107666562 502 True 359.0 359 79.923 2093 2602 1 chr7D.!!$R1 509
10 TraesCS6A01G259700 chr7D 259299603 259300192 589 False 346.0 346 78.428 2050 2607 1 chr7D.!!$F1 557
11 TraesCS6A01G259700 chr2D 201089817 201090340 523 False 351.0 351 79.507 2104 2607 1 chr2D.!!$F2 503
12 TraesCS6A01G259700 chr2D 447342558 447343072 514 False 340.0 340 79.457 2119 2607 1 chr2D.!!$F3 488
13 TraesCS6A01G259700 chr3D 516072895 516073439 544 False 346.0 346 78.938 2090 2608 1 chr3D.!!$F1 518
14 TraesCS6A01G259700 chr3D 571003099 571003648 549 False 279.0 279 77.174 2100 2607 1 chr3D.!!$F2 507
15 TraesCS6A01G259700 chr1A 568128328 568128903 575 False 337.0 337 77.990 2045 2595 1 chr1A.!!$F1 550
16 TraesCS6A01G259700 chr4D 62104571 62105112 541 False 302.0 302 77.798 2093 2602 1 chr4D.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 707 0.030235 TATCGTCGAGGTCAATGGCG 59.97 55.0 4.85 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1950 0.109781 TCGCAGCATTTTTCCTTCGC 60.11 50.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 8.812147 AAAATTCAGGAACTTTTTACGGAATC 57.188 30.769 0.00 0.00 38.96 2.52
52 53 7.519032 AATTCAGGAACTTTTTACGGAATCA 57.481 32.000 0.00 0.00 38.96 2.57
53 54 6.945938 TTCAGGAACTTTTTACGGAATCAA 57.054 33.333 0.00 0.00 34.60 2.57
54 55 6.945938 TCAGGAACTTTTTACGGAATCAAA 57.054 33.333 0.00 0.00 34.60 2.69
55 56 6.731164 TCAGGAACTTTTTACGGAATCAAAC 58.269 36.000 0.00 0.00 34.60 2.93
56 57 6.319152 TCAGGAACTTTTTACGGAATCAAACA 59.681 34.615 0.00 0.00 34.60 2.83
57 58 7.013846 TCAGGAACTTTTTACGGAATCAAACAT 59.986 33.333 0.00 0.00 34.60 2.71
58 59 7.114811 CAGGAACTTTTTACGGAATCAAACATG 59.885 37.037 0.00 0.00 34.60 3.21
59 60 7.013846 AGGAACTTTTTACGGAATCAAACATGA 59.986 33.333 0.00 0.00 27.25 3.07
60 61 7.114388 GGAACTTTTTACGGAATCAAACATGAC 59.886 37.037 0.00 0.00 0.00 3.06
61 62 6.443792 ACTTTTTACGGAATCAAACATGACC 58.556 36.000 0.00 0.00 0.00 4.02
62 63 6.039941 ACTTTTTACGGAATCAAACATGACCA 59.960 34.615 0.00 0.00 0.00 4.02
63 64 5.621197 TTTACGGAATCAAACATGACCAG 57.379 39.130 0.00 0.00 0.00 4.00
64 65 2.436417 ACGGAATCAAACATGACCAGG 58.564 47.619 0.00 0.00 0.00 4.45
65 66 2.224769 ACGGAATCAAACATGACCAGGT 60.225 45.455 0.00 0.00 0.00 4.00
66 67 3.008594 ACGGAATCAAACATGACCAGGTA 59.991 43.478 0.00 0.00 0.00 3.08
67 68 4.199310 CGGAATCAAACATGACCAGGTAT 58.801 43.478 0.00 0.00 0.00 2.73
68 69 4.640201 CGGAATCAAACATGACCAGGTATT 59.360 41.667 0.00 0.00 0.00 1.89
69 70 5.449041 CGGAATCAAACATGACCAGGTATTG 60.449 44.000 0.00 0.00 0.00 1.90
70 71 4.989279 ATCAAACATGACCAGGTATTGC 57.011 40.909 0.00 0.00 0.00 3.56
71 72 3.760738 TCAAACATGACCAGGTATTGCA 58.239 40.909 0.00 0.00 0.00 4.08
72 73 3.505680 TCAAACATGACCAGGTATTGCAC 59.494 43.478 0.00 0.00 0.00 4.57
73 74 3.439857 AACATGACCAGGTATTGCACT 57.560 42.857 0.00 0.00 0.00 4.40
74 75 3.439857 ACATGACCAGGTATTGCACTT 57.560 42.857 0.00 0.00 0.00 3.16
75 76 4.568072 ACATGACCAGGTATTGCACTTA 57.432 40.909 0.00 0.00 0.00 2.24
76 77 5.116084 ACATGACCAGGTATTGCACTTAT 57.884 39.130 0.00 0.00 0.00 1.73
77 78 4.883585 ACATGACCAGGTATTGCACTTATG 59.116 41.667 0.00 0.00 0.00 1.90
78 79 4.568072 TGACCAGGTATTGCACTTATGT 57.432 40.909 0.00 0.00 0.00 2.29
79 80 5.685520 TGACCAGGTATTGCACTTATGTA 57.314 39.130 0.00 0.00 0.00 2.29
80 81 6.056090 TGACCAGGTATTGCACTTATGTAA 57.944 37.500 0.00 0.00 34.70 2.41
81 82 6.477253 TGACCAGGTATTGCACTTATGTAAA 58.523 36.000 0.00 0.00 33.83 2.01
82 83 6.943146 TGACCAGGTATTGCACTTATGTAAAA 59.057 34.615 0.00 0.00 33.83 1.52
83 84 7.448777 TGACCAGGTATTGCACTTATGTAAAAA 59.551 33.333 0.00 0.00 33.83 1.94
84 85 8.361169 ACCAGGTATTGCACTTATGTAAAAAT 57.639 30.769 0.00 0.00 33.83 1.82
85 86 9.469097 ACCAGGTATTGCACTTATGTAAAAATA 57.531 29.630 0.00 0.00 33.83 1.40
117 118 7.510549 AGGAAATGACATTTATTGTATCCGG 57.489 36.000 13.34 0.00 39.18 5.14
118 119 6.490040 AGGAAATGACATTTATTGTATCCGGG 59.510 38.462 13.34 0.00 39.18 5.73
119 120 6.294508 GGAAATGACATTTATTGTATCCGGGG 60.295 42.308 13.34 0.00 39.18 5.73
120 121 4.781775 TGACATTTATTGTATCCGGGGT 57.218 40.909 0.00 0.00 39.18 4.95
121 122 4.710324 TGACATTTATTGTATCCGGGGTC 58.290 43.478 0.00 0.00 39.18 4.46
122 123 4.164413 TGACATTTATTGTATCCGGGGTCA 59.836 41.667 0.00 0.00 39.18 4.02
123 124 5.118729 ACATTTATTGTATCCGGGGTCAA 57.881 39.130 0.00 5.06 36.57 3.18
124 125 5.511363 ACATTTATTGTATCCGGGGTCAAA 58.489 37.500 0.00 0.00 36.57 2.69
125 126 5.592688 ACATTTATTGTATCCGGGGTCAAAG 59.407 40.000 0.00 0.00 36.57 2.77
126 127 5.438698 TTTATTGTATCCGGGGTCAAAGA 57.561 39.130 0.00 0.00 0.00 2.52
127 128 5.640158 TTATTGTATCCGGGGTCAAAGAT 57.360 39.130 0.00 0.00 0.00 2.40
128 129 4.519906 ATTGTATCCGGGGTCAAAGATT 57.480 40.909 0.00 0.00 0.00 2.40
129 130 4.310022 TTGTATCCGGGGTCAAAGATTT 57.690 40.909 0.00 0.00 0.00 2.17
130 131 3.881220 TGTATCCGGGGTCAAAGATTTC 58.119 45.455 0.00 0.00 0.00 2.17
131 132 3.521937 TGTATCCGGGGTCAAAGATTTCT 59.478 43.478 0.00 0.00 0.00 2.52
132 133 2.781681 TCCGGGGTCAAAGATTTCTC 57.218 50.000 0.00 0.00 0.00 2.87
133 134 1.982226 TCCGGGGTCAAAGATTTCTCA 59.018 47.619 0.00 0.00 0.00 3.27
134 135 2.373836 TCCGGGGTCAAAGATTTCTCAA 59.626 45.455 0.00 0.00 0.00 3.02
135 136 3.153919 CCGGGGTCAAAGATTTCTCAAA 58.846 45.455 0.00 0.00 0.00 2.69
136 137 3.572255 CCGGGGTCAAAGATTTCTCAAAA 59.428 43.478 0.00 0.00 0.00 2.44
137 138 4.038642 CCGGGGTCAAAGATTTCTCAAAAA 59.961 41.667 0.00 0.00 0.00 1.94
211 212 7.979444 TTTTTATCCTGAAGTCAACGAGAAT 57.021 32.000 0.00 0.00 0.00 2.40
212 213 7.979444 TTTTATCCTGAAGTCAACGAGAATT 57.021 32.000 0.00 0.00 37.23 2.17
213 214 9.496873 TTTTTATCCTGAAGTCAACGAGAATTA 57.503 29.630 0.00 0.00 34.14 1.40
214 215 9.667107 TTTTATCCTGAAGTCAACGAGAATTAT 57.333 29.630 0.00 0.00 34.14 1.28
215 216 9.667107 TTTATCCTGAAGTCAACGAGAATTATT 57.333 29.630 0.00 0.00 34.14 1.40
216 217 7.778470 ATCCTGAAGTCAACGAGAATTATTC 57.222 36.000 0.00 0.00 34.14 1.75
217 218 6.106673 TCCTGAAGTCAACGAGAATTATTCC 58.893 40.000 0.78 0.00 34.14 3.01
218 219 6.070767 TCCTGAAGTCAACGAGAATTATTCCT 60.071 38.462 0.78 0.00 34.14 3.36
219 220 6.595716 CCTGAAGTCAACGAGAATTATTCCTT 59.404 38.462 0.78 0.00 34.14 3.36
220 221 7.364522 TGAAGTCAACGAGAATTATTCCTTG 57.635 36.000 0.78 2.04 34.14 3.61
221 222 6.371548 TGAAGTCAACGAGAATTATTCCTTGG 59.628 38.462 0.78 0.00 34.14 3.61
222 223 4.636206 AGTCAACGAGAATTATTCCTTGGC 59.364 41.667 0.78 3.28 0.00 4.52
223 224 3.945285 TCAACGAGAATTATTCCTTGGCC 59.055 43.478 0.00 0.00 0.00 5.36
224 225 3.644966 ACGAGAATTATTCCTTGGCCA 57.355 42.857 0.00 0.00 0.00 5.36
225 226 3.963129 ACGAGAATTATTCCTTGGCCAA 58.037 40.909 19.25 19.25 0.00 4.52
226 227 4.340617 ACGAGAATTATTCCTTGGCCAAA 58.659 39.130 20.91 5.01 0.00 3.28
227 228 4.157840 ACGAGAATTATTCCTTGGCCAAAC 59.842 41.667 20.91 2.91 0.00 2.93
228 229 4.672409 GAGAATTATTCCTTGGCCAAACG 58.328 43.478 20.91 12.67 0.00 3.60
229 230 4.086457 AGAATTATTCCTTGGCCAAACGT 58.914 39.130 20.91 8.48 0.00 3.99
230 231 4.526650 AGAATTATTCCTTGGCCAAACGTT 59.473 37.500 20.91 7.71 0.00 3.99
231 232 4.882842 ATTATTCCTTGGCCAAACGTTT 57.117 36.364 20.91 7.96 0.00 3.60
232 233 4.674281 TTATTCCTTGGCCAAACGTTTT 57.326 36.364 20.91 5.17 0.00 2.43
233 234 5.786264 TTATTCCTTGGCCAAACGTTTTA 57.214 34.783 20.91 4.19 0.00 1.52
234 235 4.882842 ATTCCTTGGCCAAACGTTTTAT 57.117 36.364 20.91 3.59 0.00 1.40
235 236 5.986501 ATTCCTTGGCCAAACGTTTTATA 57.013 34.783 20.91 0.00 0.00 0.98
236 237 5.986501 TTCCTTGGCCAAACGTTTTATAT 57.013 34.783 20.91 0.00 0.00 0.86
237 238 5.317733 TCCTTGGCCAAACGTTTTATATG 57.682 39.130 20.91 2.67 0.00 1.78
238 239 5.010933 TCCTTGGCCAAACGTTTTATATGA 58.989 37.500 20.91 0.00 0.00 2.15
239 240 5.124776 TCCTTGGCCAAACGTTTTATATGAG 59.875 40.000 20.91 1.66 0.00 2.90
240 241 5.105917 CCTTGGCCAAACGTTTTATATGAGT 60.106 40.000 20.91 0.00 0.00 3.41
241 242 6.094325 CCTTGGCCAAACGTTTTATATGAGTA 59.906 38.462 20.91 0.00 0.00 2.59
242 243 6.425577 TGGCCAAACGTTTTATATGAGTAC 57.574 37.500 11.66 0.00 0.00 2.73
243 244 5.938710 TGGCCAAACGTTTTATATGAGTACA 59.061 36.000 11.66 0.00 0.00 2.90
244 245 6.430308 TGGCCAAACGTTTTATATGAGTACAA 59.570 34.615 11.66 0.00 0.00 2.41
245 246 7.121463 TGGCCAAACGTTTTATATGAGTACAAT 59.879 33.333 11.66 0.00 0.00 2.71
246 247 8.614346 GGCCAAACGTTTTATATGAGTACAATA 58.386 33.333 11.66 0.00 0.00 1.90
247 248 9.429600 GCCAAACGTTTTATATGAGTACAATAC 57.570 33.333 11.66 0.00 0.00 1.89
248 249 9.925268 CCAAACGTTTTATATGAGTACAATACC 57.075 33.333 11.66 0.00 0.00 2.73
327 328 6.704056 ATTACTCTTGAATATAGGGGGTGG 57.296 41.667 0.00 0.00 0.00 4.61
328 329 4.295905 ACTCTTGAATATAGGGGGTGGA 57.704 45.455 0.00 0.00 0.00 4.02
329 330 4.235372 ACTCTTGAATATAGGGGGTGGAG 58.765 47.826 0.00 0.00 0.00 3.86
330 331 2.979678 TCTTGAATATAGGGGGTGGAGC 59.020 50.000 0.00 0.00 0.00 4.70
331 332 2.505672 TGAATATAGGGGGTGGAGCA 57.494 50.000 0.00 0.00 0.00 4.26
332 333 2.054799 TGAATATAGGGGGTGGAGCAC 58.945 52.381 0.00 0.00 0.00 4.40
351 352 4.749310 CGAGTGCCGCTTCCAGCT 62.749 66.667 0.00 0.00 39.60 4.24
352 353 2.359230 GAGTGCCGCTTCCAGCTT 60.359 61.111 0.00 0.00 39.60 3.74
353 354 1.079127 GAGTGCCGCTTCCAGCTTA 60.079 57.895 0.00 0.00 39.60 3.09
354 355 0.462759 GAGTGCCGCTTCCAGCTTAT 60.463 55.000 0.00 0.00 39.60 1.73
355 356 0.035056 AGTGCCGCTTCCAGCTTATT 60.035 50.000 0.00 0.00 39.60 1.40
356 357 0.811281 GTGCCGCTTCCAGCTTATTT 59.189 50.000 0.00 0.00 39.60 1.40
357 358 1.094785 TGCCGCTTCCAGCTTATTTC 58.905 50.000 0.00 0.00 39.60 2.17
358 359 1.340017 TGCCGCTTCCAGCTTATTTCT 60.340 47.619 0.00 0.00 39.60 2.52
359 360 2.093181 TGCCGCTTCCAGCTTATTTCTA 60.093 45.455 0.00 0.00 39.60 2.10
360 361 3.142174 GCCGCTTCCAGCTTATTTCTAT 58.858 45.455 0.00 0.00 39.60 1.98
361 362 3.565902 GCCGCTTCCAGCTTATTTCTATT 59.434 43.478 0.00 0.00 39.60 1.73
362 363 4.036852 GCCGCTTCCAGCTTATTTCTATTT 59.963 41.667 0.00 0.00 39.60 1.40
363 364 5.450550 GCCGCTTCCAGCTTATTTCTATTTT 60.451 40.000 0.00 0.00 39.60 1.82
364 365 6.564328 CCGCTTCCAGCTTATTTCTATTTTT 58.436 36.000 0.00 0.00 39.60 1.94
389 390 4.137872 GCTGCCCGCAACATGCAT 62.138 61.111 0.00 0.00 45.36 3.96
390 391 2.202690 CTGCCCGCAACATGCATG 60.203 61.111 25.09 25.09 45.36 4.06
391 392 2.990395 TGCCCGCAACATGCATGT 60.990 55.556 26.61 26.61 45.36 3.21
392 393 1.655885 CTGCCCGCAACATGCATGTA 61.656 55.000 31.55 13.88 45.36 2.29
393 394 1.036481 TGCCCGCAACATGCATGTAT 61.036 50.000 31.55 18.64 45.36 2.29
394 395 0.595567 GCCCGCAACATGCATGTATG 60.596 55.000 31.55 27.62 45.36 2.39
412 413 7.939782 CATGTATGCATTAAGTAATCCAACCA 58.060 34.615 3.54 0.00 31.99 3.67
413 414 8.579006 CATGTATGCATTAAGTAATCCAACCAT 58.421 33.333 3.54 0.00 31.99 3.55
414 415 8.165239 TGTATGCATTAAGTAATCCAACCATC 57.835 34.615 3.54 0.00 0.00 3.51
415 416 6.655078 ATGCATTAAGTAATCCAACCATCC 57.345 37.500 0.00 0.00 0.00 3.51
416 417 5.514169 TGCATTAAGTAATCCAACCATCCA 58.486 37.500 0.00 0.00 0.00 3.41
417 418 6.135454 TGCATTAAGTAATCCAACCATCCAT 58.865 36.000 0.00 0.00 0.00 3.41
418 419 7.293828 TGCATTAAGTAATCCAACCATCCATA 58.706 34.615 0.00 0.00 0.00 2.74
419 420 7.448161 TGCATTAAGTAATCCAACCATCCATAG 59.552 37.037 0.00 0.00 0.00 2.23
420 421 7.665559 GCATTAAGTAATCCAACCATCCATAGA 59.334 37.037 0.00 0.00 0.00 1.98
421 422 9.003658 CATTAAGTAATCCAACCATCCATAGAC 57.996 37.037 0.00 0.00 0.00 2.59
422 423 6.831664 AAGTAATCCAACCATCCATAGACT 57.168 37.500 0.00 0.00 0.00 3.24
423 424 6.179906 AGTAATCCAACCATCCATAGACTG 57.820 41.667 0.00 0.00 0.00 3.51
425 426 1.490490 TCCAACCATCCATAGACTGGC 59.510 52.381 0.00 0.00 45.52 4.85
426 427 1.477558 CCAACCATCCATAGACTGGCC 60.478 57.143 0.00 0.00 45.52 5.36
427 428 1.492176 CAACCATCCATAGACTGGCCT 59.508 52.381 3.32 0.00 45.52 5.19
428 429 2.705658 CAACCATCCATAGACTGGCCTA 59.294 50.000 3.32 0.00 45.52 3.93
429 430 2.614259 ACCATCCATAGACTGGCCTAG 58.386 52.381 3.32 2.01 45.52 3.02
430 431 1.277557 CCATCCATAGACTGGCCTAGC 59.722 57.143 3.32 0.00 45.52 3.42
440 441 3.552219 GGCCTAGCCCCTACAGTC 58.448 66.667 0.00 0.00 44.06 3.51
441 442 1.075151 GGCCTAGCCCCTACAGTCT 60.075 63.158 0.00 0.00 44.06 3.24
442 443 0.187851 GGCCTAGCCCCTACAGTCTA 59.812 60.000 0.00 0.00 44.06 2.59
443 444 1.623163 GCCTAGCCCCTACAGTCTAG 58.377 60.000 0.00 0.00 0.00 2.43
444 445 1.623163 CCTAGCCCCTACAGTCTAGC 58.377 60.000 0.00 0.00 0.00 3.42
445 446 1.146152 CCTAGCCCCTACAGTCTAGCT 59.854 57.143 0.00 0.00 0.00 3.32
460 461 3.379445 GCTGCTGCTGCCCAACAT 61.379 61.111 19.30 0.00 38.71 2.71
461 462 2.571757 CTGCTGCTGCCCAACATG 59.428 61.111 13.47 0.00 38.71 3.21
462 463 3.642778 CTGCTGCTGCCCAACATGC 62.643 63.158 13.47 0.00 38.71 4.06
463 464 3.687102 GCTGCTGCCCAACATGCA 61.687 61.111 3.85 0.00 37.17 3.96
464 465 3.052954 CTGCTGCCCAACATGCAA 58.947 55.556 0.00 0.00 38.46 4.08
465 466 1.594833 CTGCTGCCCAACATGCAAT 59.405 52.632 0.00 0.00 38.46 3.56
466 467 0.036765 CTGCTGCCCAACATGCAATT 60.037 50.000 0.00 0.00 38.46 2.32
467 468 0.037139 TGCTGCCCAACATGCAATTC 60.037 50.000 0.00 0.00 38.46 2.17
468 469 0.037139 GCTGCCCAACATGCAATTCA 60.037 50.000 0.00 0.00 38.46 2.57
469 470 1.406341 GCTGCCCAACATGCAATTCAT 60.406 47.619 0.00 0.00 38.46 2.57
470 471 2.546778 CTGCCCAACATGCAATTCATC 58.453 47.619 0.00 0.00 38.46 2.92
471 472 1.207570 TGCCCAACATGCAATTCATCC 59.792 47.619 0.00 0.00 35.40 3.51
472 473 1.207570 GCCCAACATGCAATTCATCCA 59.792 47.619 0.00 0.00 31.79 3.41
473 474 2.158871 GCCCAACATGCAATTCATCCAT 60.159 45.455 0.00 0.00 31.79 3.41
474 475 3.724374 CCCAACATGCAATTCATCCATC 58.276 45.455 0.00 0.00 31.79 3.51
475 476 3.493699 CCCAACATGCAATTCATCCATCC 60.494 47.826 0.00 0.00 31.79 3.51
476 477 3.133183 CCAACATGCAATTCATCCATCCA 59.867 43.478 0.00 0.00 31.79 3.41
477 478 4.202315 CCAACATGCAATTCATCCATCCAT 60.202 41.667 0.00 0.00 31.79 3.41
478 479 5.011227 CCAACATGCAATTCATCCATCCATA 59.989 40.000 0.00 0.00 31.79 2.74
479 480 5.977489 ACATGCAATTCATCCATCCATAG 57.023 39.130 0.00 0.00 31.79 2.23
480 481 5.637127 ACATGCAATTCATCCATCCATAGA 58.363 37.500 0.00 0.00 31.79 1.98
481 482 5.475909 ACATGCAATTCATCCATCCATAGAC 59.524 40.000 0.00 0.00 31.79 2.59
482 483 5.314718 TGCAATTCATCCATCCATAGACT 57.685 39.130 0.00 0.00 0.00 3.24
483 484 5.067954 TGCAATTCATCCATCCATAGACTG 58.932 41.667 0.00 0.00 0.00 3.51
484 485 9.181512 CATGCAATTCATCCATCCATAGACTGG 62.182 44.444 0.00 0.00 38.82 4.00
497 498 4.720046 CATAGACTGGACTAGCCTCTACA 58.280 47.826 5.06 0.00 37.63 2.74
498 499 3.290948 AGACTGGACTAGCCTCTACAG 57.709 52.381 5.06 0.00 37.63 2.74
499 500 2.578940 AGACTGGACTAGCCTCTACAGT 59.421 50.000 0.00 0.00 41.40 3.55
500 501 3.781407 AGACTGGACTAGCCTCTACAGTA 59.219 47.826 0.00 0.00 39.08 2.74
501 502 4.131596 GACTGGACTAGCCTCTACAGTAG 58.868 52.174 0.47 0.47 39.08 2.57
502 503 2.882137 CTGGACTAGCCTCTACAGTAGC 59.118 54.545 2.26 0.00 37.63 3.58
503 504 2.510382 TGGACTAGCCTCTACAGTAGCT 59.490 50.000 2.26 0.48 39.37 3.32
504 505 2.882137 GGACTAGCCTCTACAGTAGCTG 59.118 54.545 2.26 0.00 36.79 4.24
505 506 2.292292 GACTAGCCTCTACAGTAGCTGC 59.708 54.545 2.26 7.74 36.79 5.25
506 507 2.092103 ACTAGCCTCTACAGTAGCTGCT 60.092 50.000 20.78 20.78 36.79 4.24
507 508 1.110442 AGCCTCTACAGTAGCTGCTG 58.890 55.000 27.78 27.78 41.92 4.41
508 509 0.529555 GCCTCTACAGTAGCTGCTGC 60.530 60.000 29.06 11.60 39.96 5.25
509 510 0.820226 CCTCTACAGTAGCTGCTGCA 59.180 55.000 29.06 17.53 42.74 4.41
510 511 1.411977 CCTCTACAGTAGCTGCTGCAT 59.588 52.381 29.06 14.99 42.74 3.96
511 512 2.471818 CTCTACAGTAGCTGCTGCATG 58.528 52.381 29.06 19.15 42.74 4.06
512 513 0.935898 CTACAGTAGCTGCTGCATGC 59.064 55.000 29.06 11.82 42.74 4.06
536 537 7.618964 CAACACATGCAAATATTATCAGCTC 57.381 36.000 0.00 0.00 0.00 4.09
537 538 6.947644 ACACATGCAAATATTATCAGCTCA 57.052 33.333 0.00 0.00 0.00 4.26
538 539 7.337480 ACACATGCAAATATTATCAGCTCAA 57.663 32.000 0.00 0.00 0.00 3.02
539 540 7.423199 ACACATGCAAATATTATCAGCTCAAG 58.577 34.615 0.00 0.00 0.00 3.02
540 541 7.283807 ACACATGCAAATATTATCAGCTCAAGA 59.716 33.333 0.00 0.00 0.00 3.02
541 542 7.803659 CACATGCAAATATTATCAGCTCAAGAG 59.196 37.037 0.00 0.00 0.00 2.85
542 543 6.872628 TGCAAATATTATCAGCTCAAGAGG 57.127 37.500 0.00 0.00 0.00 3.69
543 544 6.594744 TGCAAATATTATCAGCTCAAGAGGA 58.405 36.000 0.00 0.00 0.00 3.71
544 545 6.709397 TGCAAATATTATCAGCTCAAGAGGAG 59.291 38.462 0.00 0.00 46.93 3.69
553 554 3.981051 TCAAGAGGAGAGCTACCGT 57.019 52.632 0.00 0.00 0.00 4.83
554 555 1.752683 TCAAGAGGAGAGCTACCGTC 58.247 55.000 0.00 0.00 0.00 4.79
555 556 1.004394 TCAAGAGGAGAGCTACCGTCA 59.996 52.381 9.32 0.00 0.00 4.35
556 557 1.819288 CAAGAGGAGAGCTACCGTCAA 59.181 52.381 9.32 0.00 0.00 3.18
557 558 2.217510 AGAGGAGAGCTACCGTCAAA 57.782 50.000 9.32 0.00 0.00 2.69
558 559 2.096248 AGAGGAGAGCTACCGTCAAAG 58.904 52.381 9.32 0.00 0.00 2.77
559 560 1.819903 GAGGAGAGCTACCGTCAAAGT 59.180 52.381 0.00 0.00 0.00 2.66
560 561 1.819903 AGGAGAGCTACCGTCAAAGTC 59.180 52.381 0.00 0.00 0.00 3.01
561 562 1.819903 GGAGAGCTACCGTCAAAGTCT 59.180 52.381 0.00 0.00 0.00 3.24
562 563 2.231721 GGAGAGCTACCGTCAAAGTCTT 59.768 50.000 0.00 0.00 0.00 3.01
563 564 3.306156 GGAGAGCTACCGTCAAAGTCTTT 60.306 47.826 0.00 0.00 0.00 2.52
564 565 4.308265 GAGAGCTACCGTCAAAGTCTTTT 58.692 43.478 0.00 0.00 0.00 2.27
565 566 5.464030 AGAGCTACCGTCAAAGTCTTTTA 57.536 39.130 0.00 0.00 0.00 1.52
566 567 5.228665 AGAGCTACCGTCAAAGTCTTTTAC 58.771 41.667 0.00 0.00 0.00 2.01
567 568 3.985925 AGCTACCGTCAAAGTCTTTTACG 59.014 43.478 20.24 20.24 0.00 3.18
571 572 4.898328 CCGTCAAAGTCTTTTACGGTAG 57.102 45.455 30.29 14.30 46.10 3.18
572 573 3.676646 CCGTCAAAGTCTTTTACGGTAGG 59.323 47.826 30.29 14.03 46.10 3.18
573 574 4.301628 CGTCAAAGTCTTTTACGGTAGGT 58.698 43.478 19.67 0.00 0.00 3.08
574 575 5.460646 CGTCAAAGTCTTTTACGGTAGGTA 58.539 41.667 19.67 0.00 0.00 3.08
575 576 6.095377 CGTCAAAGTCTTTTACGGTAGGTAT 58.905 40.000 19.67 0.00 0.00 2.73
576 577 7.250569 CGTCAAAGTCTTTTACGGTAGGTATA 58.749 38.462 19.67 0.00 0.00 1.47
577 578 7.754924 CGTCAAAGTCTTTTACGGTAGGTATAA 59.245 37.037 19.67 0.00 0.00 0.98
578 579 9.423061 GTCAAAGTCTTTTACGGTAGGTATAAA 57.577 33.333 0.00 0.00 0.00 1.40
579 580 9.423061 TCAAAGTCTTTTACGGTAGGTATAAAC 57.577 33.333 0.00 0.00 0.00 2.01
580 581 9.428097 CAAAGTCTTTTACGGTAGGTATAAACT 57.572 33.333 0.00 0.00 0.00 2.66
581 582 8.992835 AAGTCTTTTACGGTAGGTATAAACTG 57.007 34.615 0.00 0.00 0.00 3.16
582 583 7.550712 AGTCTTTTACGGTAGGTATAAACTGG 58.449 38.462 0.00 0.00 0.00 4.00
583 584 6.256539 GTCTTTTACGGTAGGTATAAACTGGC 59.743 42.308 0.00 0.00 0.00 4.85
584 585 5.937975 TTTACGGTAGGTATAAACTGGCT 57.062 39.130 0.00 0.00 0.00 4.75
585 586 7.341769 TCTTTTACGGTAGGTATAAACTGGCTA 59.658 37.037 0.00 0.00 0.00 3.93
586 587 4.926140 ACGGTAGGTATAAACTGGCTAC 57.074 45.455 0.00 0.00 0.00 3.58
587 588 4.540715 ACGGTAGGTATAAACTGGCTACT 58.459 43.478 0.00 0.00 0.00 2.57
588 589 4.340381 ACGGTAGGTATAAACTGGCTACTG 59.660 45.833 0.00 0.00 33.70 2.74
589 590 4.340381 CGGTAGGTATAAACTGGCTACTGT 59.660 45.833 0.00 0.00 0.00 3.55
590 591 5.506982 CGGTAGGTATAAACTGGCTACTGTC 60.507 48.000 0.00 0.00 0.00 3.51
591 592 5.361857 GGTAGGTATAAACTGGCTACTGTCA 59.638 44.000 0.00 0.00 0.00 3.58
592 593 6.127253 GGTAGGTATAAACTGGCTACTGTCAA 60.127 42.308 0.00 0.00 0.00 3.18
593 594 6.368779 AGGTATAAACTGGCTACTGTCAAA 57.631 37.500 0.00 0.00 0.00 2.69
594 595 6.407202 AGGTATAAACTGGCTACTGTCAAAG 58.593 40.000 0.00 0.00 0.00 2.77
595 596 6.212791 AGGTATAAACTGGCTACTGTCAAAGA 59.787 38.462 0.00 0.00 0.00 2.52
596 597 6.313164 GGTATAAACTGGCTACTGTCAAAGAC 59.687 42.308 0.00 0.00 0.00 3.01
597 598 4.423625 AAACTGGCTACTGTCAAAGACT 57.576 40.909 0.00 0.00 33.15 3.24
598 599 5.546621 AAACTGGCTACTGTCAAAGACTA 57.453 39.130 0.00 0.00 33.15 2.59
599 600 5.746990 AACTGGCTACTGTCAAAGACTAT 57.253 39.130 0.00 0.00 33.15 2.12
600 601 5.078411 ACTGGCTACTGTCAAAGACTATG 57.922 43.478 0.00 0.00 33.15 2.23
601 602 4.772624 ACTGGCTACTGTCAAAGACTATGA 59.227 41.667 0.00 0.00 33.15 2.15
602 603 5.073311 TGGCTACTGTCAAAGACTATGAC 57.927 43.478 0.00 0.00 45.82 3.06
609 610 4.043037 GTCAAAGACTATGACGGTAGGG 57.957 50.000 0.00 0.00 37.98 3.53
610 611 3.446516 GTCAAAGACTATGACGGTAGGGT 59.553 47.826 0.00 0.00 37.98 4.34
611 612 3.698040 TCAAAGACTATGACGGTAGGGTC 59.302 47.826 0.00 0.00 37.45 4.46
612 613 3.666345 AAGACTATGACGGTAGGGTCT 57.334 47.619 0.00 0.00 37.81 3.85
613 614 3.666345 AGACTATGACGGTAGGGTCTT 57.334 47.619 0.00 0.00 37.81 3.01
614 615 3.978610 AGACTATGACGGTAGGGTCTTT 58.021 45.455 0.00 0.00 37.81 2.52
615 616 4.351127 AGACTATGACGGTAGGGTCTTTT 58.649 43.478 0.00 0.00 37.81 2.27
616 617 4.776308 AGACTATGACGGTAGGGTCTTTTT 59.224 41.667 0.00 0.00 37.81 1.94
617 618 5.082251 ACTATGACGGTAGGGTCTTTTTC 57.918 43.478 0.00 0.00 37.81 2.29
618 619 4.529377 ACTATGACGGTAGGGTCTTTTTCA 59.471 41.667 0.00 0.00 37.81 2.69
619 620 4.569719 ATGACGGTAGGGTCTTTTTCAT 57.430 40.909 0.00 0.00 37.81 2.57
620 621 5.687166 ATGACGGTAGGGTCTTTTTCATA 57.313 39.130 0.00 0.00 37.81 2.15
621 622 5.687166 TGACGGTAGGGTCTTTTTCATAT 57.313 39.130 0.00 0.00 37.81 1.78
622 623 6.057321 TGACGGTAGGGTCTTTTTCATATT 57.943 37.500 0.00 0.00 37.81 1.28
623 624 7.185318 TGACGGTAGGGTCTTTTTCATATTA 57.815 36.000 0.00 0.00 37.81 0.98
624 625 7.622713 TGACGGTAGGGTCTTTTTCATATTAA 58.377 34.615 0.00 0.00 37.81 1.40
625 626 8.102047 TGACGGTAGGGTCTTTTTCATATTAAA 58.898 33.333 0.00 0.00 37.81 1.52
626 627 9.117183 GACGGTAGGGTCTTTTTCATATTAAAT 57.883 33.333 0.00 0.00 34.09 1.40
627 628 8.899771 ACGGTAGGGTCTTTTTCATATTAAATG 58.100 33.333 0.00 0.00 0.00 2.32
628 629 8.349983 CGGTAGGGTCTTTTTCATATTAAATGG 58.650 37.037 0.00 0.00 0.00 3.16
629 630 8.638873 GGTAGGGTCTTTTTCATATTAAATGGG 58.361 37.037 0.00 0.00 0.00 4.00
630 631 7.124573 AGGGTCTTTTTCATATTAAATGGGC 57.875 36.000 0.00 0.00 0.00 5.36
631 632 5.983118 GGGTCTTTTTCATATTAAATGGGCG 59.017 40.000 0.00 0.00 0.00 6.13
632 633 6.406512 GGGTCTTTTTCATATTAAATGGGCGT 60.407 38.462 0.00 0.00 0.00 5.68
633 634 6.475402 GGTCTTTTTCATATTAAATGGGCGTG 59.525 38.462 0.00 0.00 0.00 5.34
634 635 7.254852 GTCTTTTTCATATTAAATGGGCGTGA 58.745 34.615 0.00 0.00 0.00 4.35
635 636 7.220108 GTCTTTTTCATATTAAATGGGCGTGAC 59.780 37.037 0.00 0.00 0.00 3.67
636 637 4.804608 TTCATATTAAATGGGCGTGACG 57.195 40.909 0.00 0.00 0.00 4.35
637 638 3.135225 TCATATTAAATGGGCGTGACGG 58.865 45.455 7.25 0.00 0.00 4.79
638 639 2.695127 TATTAAATGGGCGTGACGGT 57.305 45.000 7.25 0.00 0.00 4.83
639 640 1.091537 ATTAAATGGGCGTGACGGTG 58.908 50.000 7.25 0.00 0.00 4.94
640 641 1.579084 TTAAATGGGCGTGACGGTGC 61.579 55.000 7.25 0.00 0.00 5.01
647 648 2.356075 CGTGACGGTGCCGGTAAA 60.356 61.111 15.44 0.00 44.69 2.01
648 649 1.738830 CGTGACGGTGCCGGTAAAT 60.739 57.895 15.44 0.00 44.69 1.40
649 650 1.689352 CGTGACGGTGCCGGTAAATC 61.689 60.000 15.44 3.61 44.69 2.17
650 651 0.671163 GTGACGGTGCCGGTAAATCA 60.671 55.000 15.44 6.21 44.69 2.57
651 652 0.250793 TGACGGTGCCGGTAAATCAT 59.749 50.000 15.44 0.00 44.69 2.45
652 653 1.481363 TGACGGTGCCGGTAAATCATA 59.519 47.619 15.44 0.00 44.69 2.15
653 654 2.103432 TGACGGTGCCGGTAAATCATAT 59.897 45.455 15.44 0.00 44.69 1.78
654 655 3.135994 GACGGTGCCGGTAAATCATATT 58.864 45.455 15.44 0.00 44.69 1.28
655 656 2.875933 ACGGTGCCGGTAAATCATATTG 59.124 45.455 15.44 0.00 44.69 1.90
656 657 2.875933 CGGTGCCGGTAAATCATATTGT 59.124 45.455 1.90 0.00 35.56 2.71
657 658 3.314080 CGGTGCCGGTAAATCATATTGTT 59.686 43.478 1.90 0.00 35.56 2.83
658 659 4.512198 CGGTGCCGGTAAATCATATTGTTA 59.488 41.667 1.90 0.00 35.56 2.41
659 660 5.333798 CGGTGCCGGTAAATCATATTGTTAG 60.334 44.000 1.90 0.00 35.56 2.34
660 661 5.761234 GGTGCCGGTAAATCATATTGTTAGA 59.239 40.000 1.90 0.00 0.00 2.10
661 662 6.430000 GGTGCCGGTAAATCATATTGTTAGAT 59.570 38.462 1.90 0.00 0.00 1.98
662 663 7.360946 GGTGCCGGTAAATCATATTGTTAGATC 60.361 40.741 1.90 0.00 0.00 2.75
663 664 7.387948 GTGCCGGTAAATCATATTGTTAGATCT 59.612 37.037 1.90 0.00 0.00 2.75
664 665 7.936847 TGCCGGTAAATCATATTGTTAGATCTT 59.063 33.333 1.90 0.00 0.00 2.40
665 666 8.784043 GCCGGTAAATCATATTGTTAGATCTTT 58.216 33.333 1.90 0.00 0.00 2.52
672 673 8.964476 ATCATATTGTTAGATCTTTTGACGGT 57.036 30.769 0.00 0.00 0.00 4.83
674 675 9.529325 TCATATTGTTAGATCTTTTGACGGTAG 57.471 33.333 0.00 0.00 0.00 3.18
675 676 8.765219 CATATTGTTAGATCTTTTGACGGTAGG 58.235 37.037 0.00 0.00 0.00 3.18
676 677 5.733620 TGTTAGATCTTTTGACGGTAGGT 57.266 39.130 0.00 0.00 0.00 3.08
677 678 6.105397 TGTTAGATCTTTTGACGGTAGGTT 57.895 37.500 0.00 0.00 0.00 3.50
678 679 5.929992 TGTTAGATCTTTTGACGGTAGGTTG 59.070 40.000 0.00 0.00 0.00 3.77
679 680 4.618920 AGATCTTTTGACGGTAGGTTGT 57.381 40.909 0.00 0.00 0.00 3.32
680 681 4.315803 AGATCTTTTGACGGTAGGTTGTG 58.684 43.478 0.00 0.00 0.00 3.33
681 682 2.215196 TCTTTTGACGGTAGGTTGTGC 58.785 47.619 0.00 0.00 0.00 4.57
682 683 2.158871 TCTTTTGACGGTAGGTTGTGCT 60.159 45.455 0.00 0.00 0.00 4.40
683 684 3.069872 TCTTTTGACGGTAGGTTGTGCTA 59.930 43.478 0.00 0.00 0.00 3.49
684 685 2.443887 TTGACGGTAGGTTGTGCTAC 57.556 50.000 0.00 0.00 0.00 3.58
685 686 0.604578 TGACGGTAGGTTGTGCTACC 59.395 55.000 0.00 0.00 41.48 3.18
686 687 0.108472 GACGGTAGGTTGTGCTACCC 60.108 60.000 0.00 0.00 41.78 3.69
687 688 0.543646 ACGGTAGGTTGTGCTACCCT 60.544 55.000 0.00 0.00 41.78 4.34
688 689 1.272648 ACGGTAGGTTGTGCTACCCTA 60.273 52.381 0.00 0.00 41.78 3.53
689 690 2.037144 CGGTAGGTTGTGCTACCCTAT 58.963 52.381 0.00 0.00 41.78 2.57
690 691 2.035576 CGGTAGGTTGTGCTACCCTATC 59.964 54.545 0.00 0.00 41.78 2.08
691 692 2.035576 GGTAGGTTGTGCTACCCTATCG 59.964 54.545 0.00 0.00 39.60 2.92
692 693 1.861982 AGGTTGTGCTACCCTATCGT 58.138 50.000 0.00 0.00 39.08 3.73
693 694 1.755380 AGGTTGTGCTACCCTATCGTC 59.245 52.381 0.00 0.00 39.08 4.20
694 695 1.535437 GGTTGTGCTACCCTATCGTCG 60.535 57.143 0.00 0.00 31.71 5.12
695 696 1.402968 GTTGTGCTACCCTATCGTCGA 59.597 52.381 0.00 0.00 0.00 4.20
696 697 1.306148 TGTGCTACCCTATCGTCGAG 58.694 55.000 0.00 0.00 0.00 4.04
697 698 0.592148 GTGCTACCCTATCGTCGAGG 59.408 60.000 0.00 0.00 0.00 4.63
698 699 0.182061 TGCTACCCTATCGTCGAGGT 59.818 55.000 9.36 9.36 36.36 3.85
699 700 0.873721 GCTACCCTATCGTCGAGGTC 59.126 60.000 7.84 0.00 33.70 3.85
700 701 1.813092 GCTACCCTATCGTCGAGGTCA 60.813 57.143 7.84 0.00 33.70 4.02
701 702 2.569059 CTACCCTATCGTCGAGGTCAA 58.431 52.381 7.84 0.00 33.70 3.18
702 703 2.068834 ACCCTATCGTCGAGGTCAAT 57.931 50.000 4.85 0.00 31.52 2.57
703 704 1.681793 ACCCTATCGTCGAGGTCAATG 59.318 52.381 4.85 0.00 31.52 2.82
704 705 1.000163 CCCTATCGTCGAGGTCAATGG 60.000 57.143 4.85 2.48 31.52 3.16
705 706 1.603172 CCTATCGTCGAGGTCAATGGC 60.603 57.143 4.85 0.00 0.00 4.40
706 707 0.030235 TATCGTCGAGGTCAATGGCG 59.970 55.000 4.85 0.00 0.00 5.69
707 708 2.629050 ATCGTCGAGGTCAATGGCGG 62.629 60.000 4.85 0.00 0.00 6.13
708 709 2.264794 GTCGAGGTCAATGGCGGT 59.735 61.111 0.00 0.00 0.00 5.68
709 710 1.514087 GTCGAGGTCAATGGCGGTA 59.486 57.895 0.00 0.00 0.00 4.02
710 711 0.108520 GTCGAGGTCAATGGCGGTAA 60.109 55.000 0.00 0.00 0.00 2.85
711 712 0.609151 TCGAGGTCAATGGCGGTAAA 59.391 50.000 0.00 0.00 0.00 2.01
712 713 1.002201 TCGAGGTCAATGGCGGTAAAA 59.998 47.619 0.00 0.00 0.00 1.52
713 714 1.807742 CGAGGTCAATGGCGGTAAAAA 59.192 47.619 0.00 0.00 0.00 1.94
756 757 8.719560 AAAAATTCCGAACTAGAGTTAGATCC 57.280 34.615 0.00 0.00 38.56 3.36
757 758 5.692613 ATTCCGAACTAGAGTTAGATCCG 57.307 43.478 0.00 0.00 38.56 4.18
758 759 3.474600 TCCGAACTAGAGTTAGATCCGG 58.525 50.000 11.34 11.34 38.56 5.14
759 760 3.118112 TCCGAACTAGAGTTAGATCCGGT 60.118 47.826 15.16 0.00 38.56 5.28
760 761 3.631227 CCGAACTAGAGTTAGATCCGGTT 59.369 47.826 0.00 0.00 38.56 4.44
761 762 4.818546 CCGAACTAGAGTTAGATCCGGTTA 59.181 45.833 0.00 0.00 38.56 2.85
762 763 5.297776 CCGAACTAGAGTTAGATCCGGTTAA 59.702 44.000 0.00 0.00 38.56 2.01
763 764 6.183360 CCGAACTAGAGTTAGATCCGGTTAAA 60.183 42.308 0.00 0.00 38.56 1.52
764 765 6.690528 CGAACTAGAGTTAGATCCGGTTAAAC 59.309 42.308 0.00 1.68 38.56 2.01
765 766 7.414984 CGAACTAGAGTTAGATCCGGTTAAACT 60.415 40.741 0.00 6.89 38.56 2.66
766 767 7.715266 ACTAGAGTTAGATCCGGTTAAACTT 57.285 36.000 0.00 1.91 30.83 2.66
767 768 8.131847 ACTAGAGTTAGATCCGGTTAAACTTT 57.868 34.615 0.00 5.10 30.83 2.66
768 769 8.591940 ACTAGAGTTAGATCCGGTTAAACTTTT 58.408 33.333 0.00 3.16 30.83 2.27
769 770 7.902387 AGAGTTAGATCCGGTTAAACTTTTC 57.098 36.000 0.00 0.00 30.83 2.29
770 771 6.589139 AGAGTTAGATCCGGTTAAACTTTTCG 59.411 38.462 0.00 0.00 30.83 3.46
771 772 6.458210 AGTTAGATCCGGTTAAACTTTTCGA 58.542 36.000 0.00 0.00 0.00 3.71
772 773 6.930722 AGTTAGATCCGGTTAAACTTTTCGAA 59.069 34.615 0.00 0.00 0.00 3.71
773 774 7.442062 AGTTAGATCCGGTTAAACTTTTCGAAA 59.558 33.333 6.47 6.47 0.00 3.46
774 775 6.622833 AGATCCGGTTAAACTTTTCGAAAA 57.377 33.333 21.35 21.35 0.00 2.29
787 788 1.585297 TCGAAAAGGGTCGAAACACC 58.415 50.000 0.00 0.00 46.52 4.16
788 789 1.134461 TCGAAAAGGGTCGAAACACCA 60.134 47.619 0.00 0.00 46.52 4.17
789 790 1.671845 CGAAAAGGGTCGAAACACCAA 59.328 47.619 0.00 0.00 43.86 3.67
790 791 2.540157 CGAAAAGGGTCGAAACACCAAC 60.540 50.000 0.00 0.00 43.86 3.77
791 792 2.131776 AAAGGGTCGAAACACCAACA 57.868 45.000 0.00 0.00 38.32 3.33
792 793 2.358322 AAGGGTCGAAACACCAACAT 57.642 45.000 0.00 0.00 38.32 2.71
793 794 2.358322 AGGGTCGAAACACCAACATT 57.642 45.000 0.00 0.00 38.32 2.71
794 795 1.953686 AGGGTCGAAACACCAACATTG 59.046 47.619 0.00 0.00 38.32 2.82
815 816 1.269998 GCCTCGCGTATACATCTCCTT 59.730 52.381 5.77 0.00 0.00 3.36
817 818 2.293677 CCTCGCGTATACATCTCCTTGT 59.706 50.000 5.77 0.00 0.00 3.16
821 822 2.797156 GCGTATACATCTCCTTGTGCTG 59.203 50.000 3.32 0.00 0.00 4.41
930 935 4.686091 GCGTCTGCTCATGCACTATTTATA 59.314 41.667 0.00 0.00 45.31 0.98
932 937 5.347093 CGTCTGCTCATGCACTATTTATAGG 59.653 44.000 0.00 0.00 45.31 2.57
951 956 2.282674 TTCCAGCCTGCAGCCTTG 60.283 61.111 8.66 0.00 45.47 3.61
952 957 3.873679 TTCCAGCCTGCAGCCTTGG 62.874 63.158 18.21 18.21 45.47 3.61
1053 1058 1.006102 CTTGTCGAACGCCCTGTCT 60.006 57.895 0.00 0.00 0.00 3.41
1121 1234 7.804843 TTGGCAACTTCATTTTGATTTGATT 57.195 28.000 0.00 0.00 37.61 2.57
1124 1237 9.153721 TGGCAACTTCATTTTGATTTGATTATC 57.846 29.630 0.00 0.00 37.61 1.75
1125 1238 9.153721 GGCAACTTCATTTTGATTTGATTATCA 57.846 29.630 0.00 0.00 32.87 2.15
1126 1239 9.962759 GCAACTTCATTTTGATTTGATTATCAC 57.037 29.630 0.00 0.00 34.41 3.06
1137 1250 7.475015 TGATTTGATTATCACTACTTGCTTGC 58.525 34.615 0.00 0.00 29.82 4.01
1143 1256 0.588252 CACTACTTGCTTGCGCTTGT 59.412 50.000 9.73 0.91 36.97 3.16
1151 1264 1.269465 TGCTTGCGCTTGTAATGCAAA 60.269 42.857 9.73 0.00 46.77 3.68
1170 1283 4.495349 GCAAAGATCGTGGAGATGAATGTG 60.495 45.833 2.20 0.00 40.26 3.21
1235 1348 4.124351 CCGGCTCGAAGGCACGTA 62.124 66.667 0.00 0.00 41.44 3.57
1236 1349 2.126228 CGGCTCGAAGGCACGTAA 60.126 61.111 8.64 0.00 41.44 3.18
1237 1350 2.158959 CGGCTCGAAGGCACGTAAG 61.159 63.158 8.64 0.00 41.44 2.34
1240 1353 1.201343 GCTCGAAGGCACGTAAGATC 58.799 55.000 0.00 0.00 43.62 2.75
1241 1354 1.841450 CTCGAAGGCACGTAAGATCC 58.159 55.000 0.00 0.00 43.62 3.36
1243 1356 1.404391 TCGAAGGCACGTAAGATCCTC 59.596 52.381 0.00 0.00 40.52 3.71
1244 1357 1.841450 GAAGGCACGTAAGATCCTCG 58.159 55.000 0.00 0.00 40.52 4.63
1248 1361 1.337071 GGCACGTAAGATCCTCGATCA 59.663 52.381 4.56 0.00 41.12 2.92
1251 1364 3.483734 CACGTAAGATCCTCGATCATCG 58.516 50.000 0.00 0.00 41.12 3.84
1266 1379 1.792367 TCATCGTTCAGCAGAAACACG 59.208 47.619 0.00 0.00 35.08 4.49
1267 1380 1.526887 CATCGTTCAGCAGAAACACGT 59.473 47.619 0.00 0.00 35.08 4.49
1271 1384 0.856641 TTCAGCAGAAACACGTACGC 59.143 50.000 16.72 0.00 0.00 4.42
1274 1387 2.934324 GCAGAAACACGTACGCGCA 61.934 57.895 16.72 0.00 42.83 6.09
1275 1388 1.779061 CAGAAACACGTACGCGCAT 59.221 52.632 16.72 0.00 42.83 4.73
1276 1389 0.516322 CAGAAACACGTACGCGCATG 60.516 55.000 16.72 8.69 42.83 4.06
1288 1401 2.511373 CGCATGCGGTCCAGCTAA 60.511 61.111 31.99 0.00 38.13 3.09
1289 1402 2.813179 CGCATGCGGTCCAGCTAAC 61.813 63.158 31.99 0.00 38.13 2.34
1290 1403 1.450312 GCATGCGGTCCAGCTAACT 60.450 57.895 0.00 0.00 38.13 2.24
1293 1406 0.176680 ATGCGGTCCAGCTAACTCTG 59.823 55.000 7.14 0.00 38.13 3.35
1298 1411 1.402984 GGTCCAGCTAACTCTGTCGTG 60.403 57.143 0.00 0.00 32.32 4.35
1460 1615 0.896940 GGTACCTGGAGGACGACACA 60.897 60.000 4.06 0.00 38.94 3.72
1477 1632 2.108514 CATACCTGCCCACGCACAG 61.109 63.158 0.00 0.00 41.12 3.66
1623 1778 0.394565 GTGATCCTCCATTCCTCCGG 59.605 60.000 0.00 0.00 0.00 5.14
1637 1792 6.071616 CCATTCCTCCGGAAGAAATTTACAAA 60.072 38.462 19.11 0.00 45.48 2.83
1734 1901 1.518367 TCCTTTGGACTTGACCACCT 58.482 50.000 0.00 0.00 39.85 4.00
1779 1950 2.862536 CGATGCTGTTCTACATCACAGG 59.137 50.000 0.00 0.00 42.28 4.00
1782 1953 1.404181 GCTGTTCTACATCACAGGCGA 60.404 52.381 1.72 0.00 40.77 5.54
1784 1955 2.926200 CTGTTCTACATCACAGGCGAAG 59.074 50.000 0.00 0.00 37.37 3.79
1785 1956 2.271800 GTTCTACATCACAGGCGAAGG 58.728 52.381 0.00 0.00 0.00 3.46
1832 2003 2.366533 TCGAAGCTAGTGGACGATCTT 58.633 47.619 0.00 0.00 0.00 2.40
1853 2024 9.418045 GATCTTGCTAAGGTATCTTCTGTAATC 57.582 37.037 0.00 0.00 34.59 1.75
1872 2043 9.829507 CTGTAATCTAATCTTGTCTCTGGATTT 57.170 33.333 0.00 0.00 32.78 2.17
1890 2061 0.321564 TTGACAACATGCGGAGGGAG 60.322 55.000 0.00 0.00 0.00 4.30
1967 2138 5.130477 ACGATCCACAGATTTATAAGGGTGT 59.870 40.000 0.00 0.71 30.90 4.16
2025 2199 2.803133 GCGTAGAGGCAGATGCATACAA 60.803 50.000 0.00 0.00 44.36 2.41
2077 2253 0.549469 AACACCGACCCTCAAACCTT 59.451 50.000 0.00 0.00 0.00 3.50
2086 2263 1.144913 CCCTCAAACCTTCCTCAACCA 59.855 52.381 0.00 0.00 0.00 3.67
2088 2265 3.500343 CCTCAAACCTTCCTCAACCATT 58.500 45.455 0.00 0.00 0.00 3.16
2117 2308 3.017442 TGAAAACCATTCAACACGGTCA 58.983 40.909 0.00 0.00 30.91 4.02
2127 2318 2.028839 TCAACACGGTCATGTATCGGTT 60.029 45.455 0.00 0.63 35.41 4.44
2130 2321 2.028839 ACACGGTCATGTATCGGTTCAA 60.029 45.455 0.00 0.00 35.41 2.69
2155 2346 0.179067 AGTCCGGACGTGCTTTTTCA 60.179 50.000 28.26 0.00 36.20 2.69
2201 2398 1.070786 GTTTGCAGGAGTCCGGACA 59.929 57.895 35.00 11.91 0.00 4.02
2249 2447 1.234529 CCCACCAAAAACCCCTCCA 59.765 57.895 0.00 0.00 0.00 3.86
2273 2486 4.007940 GCGTTTTCGGTCAGCGCA 62.008 61.111 11.47 0.00 46.23 6.09
2475 2710 4.069232 CGTCTCCTCTGGCGCCAA 62.069 66.667 32.09 19.71 0.00 4.52
2486 2721 4.980805 GCGCCAACCGTCAGTCCA 62.981 66.667 0.00 0.00 39.71 4.02
2492 2727 0.320683 CAACCGTCAGTCCATCTGCA 60.321 55.000 0.00 0.00 43.32 4.41
2514 2749 2.747446 GCCCACCGGTGCTATATAAATG 59.253 50.000 29.75 10.98 0.00 2.32
2521 2777 2.671396 GGTGCTATATAAATGCCCGACG 59.329 50.000 0.00 0.00 0.00 5.12
2538 2794 2.061773 GACGATAGCCACAATCATCCG 58.938 52.381 0.00 0.00 42.67 4.18
2570 2836 3.170672 CCCGCCATGGATCCCTCA 61.171 66.667 18.40 0.00 42.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.256477 GATTCCGTAAAAAGTTCCTGAATTTTT 57.744 29.630 7.14 7.14 40.41 1.94
26 27 8.417884 TGATTCCGTAAAAAGTTCCTGAATTTT 58.582 29.630 0.00 0.00 32.66 1.82
27 28 7.947282 TGATTCCGTAAAAAGTTCCTGAATTT 58.053 30.769 0.00 0.00 0.00 1.82
28 29 7.519032 TGATTCCGTAAAAAGTTCCTGAATT 57.481 32.000 0.00 0.00 0.00 2.17
29 30 7.519032 TTGATTCCGTAAAAAGTTCCTGAAT 57.481 32.000 0.00 0.00 0.00 2.57
30 31 6.945938 TTGATTCCGTAAAAAGTTCCTGAA 57.054 33.333 0.00 0.00 0.00 3.02
31 32 6.319152 TGTTTGATTCCGTAAAAAGTTCCTGA 59.681 34.615 0.00 0.00 0.00 3.86
32 33 6.500041 TGTTTGATTCCGTAAAAAGTTCCTG 58.500 36.000 0.00 0.00 0.00 3.86
33 34 6.702716 TGTTTGATTCCGTAAAAAGTTCCT 57.297 33.333 0.00 0.00 0.00 3.36
34 35 7.114388 GTCATGTTTGATTCCGTAAAAAGTTCC 59.886 37.037 0.00 0.00 33.56 3.62
35 36 7.114388 GGTCATGTTTGATTCCGTAAAAAGTTC 59.886 37.037 0.00 0.00 33.56 3.01
36 37 6.921307 GGTCATGTTTGATTCCGTAAAAAGTT 59.079 34.615 0.00 0.00 33.56 2.66
37 38 6.039941 TGGTCATGTTTGATTCCGTAAAAAGT 59.960 34.615 0.00 0.00 33.56 2.66
38 39 6.442952 TGGTCATGTTTGATTCCGTAAAAAG 58.557 36.000 0.00 0.00 33.56 2.27
39 40 6.392625 TGGTCATGTTTGATTCCGTAAAAA 57.607 33.333 0.00 0.00 33.56 1.94
40 41 5.048364 CCTGGTCATGTTTGATTCCGTAAAA 60.048 40.000 0.00 0.00 33.56 1.52
41 42 4.457603 CCTGGTCATGTTTGATTCCGTAAA 59.542 41.667 0.00 0.00 33.56 2.01
42 43 4.006989 CCTGGTCATGTTTGATTCCGTAA 58.993 43.478 0.00 0.00 33.56 3.18
43 44 3.008594 ACCTGGTCATGTTTGATTCCGTA 59.991 43.478 0.00 0.00 33.56 4.02
44 45 2.224769 ACCTGGTCATGTTTGATTCCGT 60.225 45.455 0.00 0.00 33.56 4.69
45 46 2.436417 ACCTGGTCATGTTTGATTCCG 58.564 47.619 0.00 0.00 33.56 4.30
46 47 5.679638 GCAATACCTGGTCATGTTTGATTCC 60.680 44.000 0.63 0.00 33.56 3.01
47 48 5.105797 TGCAATACCTGGTCATGTTTGATTC 60.106 40.000 0.63 0.00 33.56 2.52
48 49 4.771577 TGCAATACCTGGTCATGTTTGATT 59.228 37.500 0.63 0.00 33.56 2.57
49 50 4.158394 GTGCAATACCTGGTCATGTTTGAT 59.842 41.667 0.63 0.00 33.56 2.57
50 51 3.505680 GTGCAATACCTGGTCATGTTTGA 59.494 43.478 0.63 0.00 0.00 2.69
51 52 3.507233 AGTGCAATACCTGGTCATGTTTG 59.493 43.478 0.63 2.58 0.00 2.93
52 53 3.766545 AGTGCAATACCTGGTCATGTTT 58.233 40.909 0.63 0.00 0.00 2.83
53 54 3.439857 AGTGCAATACCTGGTCATGTT 57.560 42.857 0.63 0.00 0.00 2.71
54 55 3.439857 AAGTGCAATACCTGGTCATGT 57.560 42.857 0.63 0.00 0.00 3.21
55 56 4.883585 ACATAAGTGCAATACCTGGTCATG 59.116 41.667 0.63 4.92 0.00 3.07
56 57 5.116084 ACATAAGTGCAATACCTGGTCAT 57.884 39.130 0.63 0.00 0.00 3.06
57 58 4.568072 ACATAAGTGCAATACCTGGTCA 57.432 40.909 0.63 0.00 0.00 4.02
58 59 6.995511 TTTACATAAGTGCAATACCTGGTC 57.004 37.500 0.63 0.00 0.00 4.02
59 60 7.768807 TTTTTACATAAGTGCAATACCTGGT 57.231 32.000 4.05 4.05 0.00 4.00
91 92 9.231297 CCGGATACAATAAATGTCATTTCCTAT 57.769 33.333 14.07 0.48 42.70 2.57
92 93 7.663905 CCCGGATACAATAAATGTCATTTCCTA 59.336 37.037 14.07 0.00 42.70 2.94
93 94 6.490040 CCCGGATACAATAAATGTCATTTCCT 59.510 38.462 14.07 1.22 42.70 3.36
94 95 6.294508 CCCCGGATACAATAAATGTCATTTCC 60.295 42.308 14.07 7.04 42.70 3.13
95 96 6.264518 ACCCCGGATACAATAAATGTCATTTC 59.735 38.462 14.07 0.00 42.70 2.17
96 97 6.133356 ACCCCGGATACAATAAATGTCATTT 58.867 36.000 14.98 14.98 42.70 2.32
97 98 5.701224 ACCCCGGATACAATAAATGTCATT 58.299 37.500 0.73 0.00 42.70 2.57
98 99 5.163141 TGACCCCGGATACAATAAATGTCAT 60.163 40.000 0.73 0.00 42.70 3.06
99 100 4.164413 TGACCCCGGATACAATAAATGTCA 59.836 41.667 0.73 0.00 42.70 3.58
100 101 4.710324 TGACCCCGGATACAATAAATGTC 58.290 43.478 0.73 0.00 42.70 3.06
101 102 4.781775 TGACCCCGGATACAATAAATGT 57.218 40.909 0.73 0.00 46.36 2.71
102 103 5.825679 TCTTTGACCCCGGATACAATAAATG 59.174 40.000 0.73 0.00 0.00 2.32
103 104 6.008696 TCTTTGACCCCGGATACAATAAAT 57.991 37.500 0.73 0.00 0.00 1.40
104 105 5.438698 TCTTTGACCCCGGATACAATAAA 57.561 39.130 0.73 0.00 0.00 1.40
105 106 5.640158 ATCTTTGACCCCGGATACAATAA 57.360 39.130 0.73 0.00 0.00 1.40
106 107 5.640158 AATCTTTGACCCCGGATACAATA 57.360 39.130 0.73 0.00 0.00 1.90
107 108 4.519906 AATCTTTGACCCCGGATACAAT 57.480 40.909 0.73 0.00 0.00 2.71
108 109 4.018779 AGAAATCTTTGACCCCGGATACAA 60.019 41.667 0.73 2.75 0.00 2.41
109 110 3.521937 AGAAATCTTTGACCCCGGATACA 59.478 43.478 0.73 0.00 0.00 2.29
110 111 4.127907 GAGAAATCTTTGACCCCGGATAC 58.872 47.826 0.73 0.00 0.00 2.24
111 112 3.778075 TGAGAAATCTTTGACCCCGGATA 59.222 43.478 0.73 0.00 0.00 2.59
112 113 2.576191 TGAGAAATCTTTGACCCCGGAT 59.424 45.455 0.73 0.00 0.00 4.18
113 114 1.982226 TGAGAAATCTTTGACCCCGGA 59.018 47.619 0.73 0.00 0.00 5.14
114 115 2.489938 TGAGAAATCTTTGACCCCGG 57.510 50.000 0.00 0.00 0.00 5.73
115 116 4.846779 TTTTGAGAAATCTTTGACCCCG 57.153 40.909 0.00 0.00 0.00 5.73
187 188 7.979444 ATTCTCGTTGACTTCAGGATAAAAA 57.021 32.000 0.00 0.00 0.00 1.94
188 189 7.979444 AATTCTCGTTGACTTCAGGATAAAA 57.021 32.000 0.00 0.00 0.00 1.52
189 190 9.667107 AATAATTCTCGTTGACTTCAGGATAAA 57.333 29.630 0.00 0.00 0.00 1.40
190 191 9.314321 GAATAATTCTCGTTGACTTCAGGATAA 57.686 33.333 0.00 0.00 0.00 1.75
191 192 7.926555 GGAATAATTCTCGTTGACTTCAGGATA 59.073 37.037 0.00 0.00 0.00 2.59
192 193 6.763610 GGAATAATTCTCGTTGACTTCAGGAT 59.236 38.462 0.00 0.00 0.00 3.24
193 194 6.070767 AGGAATAATTCTCGTTGACTTCAGGA 60.071 38.462 0.00 0.00 0.00 3.86
194 195 6.109359 AGGAATAATTCTCGTTGACTTCAGG 58.891 40.000 0.00 0.00 0.00 3.86
195 196 7.413438 CCAAGGAATAATTCTCGTTGACTTCAG 60.413 40.741 17.84 3.88 39.77 3.02
196 197 6.371548 CCAAGGAATAATTCTCGTTGACTTCA 59.628 38.462 17.84 0.00 39.77 3.02
197 198 6.675728 GCCAAGGAATAATTCTCGTTGACTTC 60.676 42.308 17.84 6.58 39.77 3.01
198 199 5.123979 GCCAAGGAATAATTCTCGTTGACTT 59.876 40.000 17.84 0.00 39.77 3.01
199 200 4.636206 GCCAAGGAATAATTCTCGTTGACT 59.364 41.667 17.84 0.00 39.77 3.41
200 201 4.201920 GGCCAAGGAATAATTCTCGTTGAC 60.202 45.833 17.84 10.51 39.77 3.18
201 202 3.945285 GGCCAAGGAATAATTCTCGTTGA 59.055 43.478 17.84 0.00 39.77 3.18
202 203 3.694072 TGGCCAAGGAATAATTCTCGTTG 59.306 43.478 0.61 12.59 38.05 4.10
203 204 3.963129 TGGCCAAGGAATAATTCTCGTT 58.037 40.909 0.61 0.00 0.00 3.85
204 205 3.644966 TGGCCAAGGAATAATTCTCGT 57.355 42.857 0.61 0.00 0.00 4.18
205 206 4.672409 GTTTGGCCAAGGAATAATTCTCG 58.328 43.478 19.48 0.00 0.00 4.04
206 207 4.157840 ACGTTTGGCCAAGGAATAATTCTC 59.842 41.667 19.48 0.00 0.00 2.87
207 208 4.086457 ACGTTTGGCCAAGGAATAATTCT 58.914 39.130 19.48 0.00 0.00 2.40
208 209 4.450082 ACGTTTGGCCAAGGAATAATTC 57.550 40.909 19.48 1.72 0.00 2.17
209 210 4.882842 AACGTTTGGCCAAGGAATAATT 57.117 36.364 19.48 4.96 0.00 1.40
210 211 4.882842 AAACGTTTGGCCAAGGAATAAT 57.117 36.364 19.48 0.37 0.00 1.28
211 212 4.674281 AAAACGTTTGGCCAAGGAATAA 57.326 36.364 19.48 0.00 0.00 1.40
212 213 5.986501 ATAAAACGTTTGGCCAAGGAATA 57.013 34.783 19.48 8.97 0.00 1.75
213 214 4.882842 ATAAAACGTTTGGCCAAGGAAT 57.117 36.364 19.48 4.15 0.00 3.01
214 215 5.477291 TCATATAAAACGTTTGGCCAAGGAA 59.523 36.000 19.48 0.21 0.00 3.36
215 216 5.010933 TCATATAAAACGTTTGGCCAAGGA 58.989 37.500 19.48 1.10 0.00 3.36
216 217 5.105917 ACTCATATAAAACGTTTGGCCAAGG 60.106 40.000 19.48 16.87 0.00 3.61
217 218 5.949735 ACTCATATAAAACGTTTGGCCAAG 58.050 37.500 19.48 10.88 0.00 3.61
218 219 5.968528 ACTCATATAAAACGTTTGGCCAA 57.031 34.783 16.05 16.05 0.00 4.52
219 220 5.938710 TGTACTCATATAAAACGTTTGGCCA 59.061 36.000 15.46 0.00 0.00 5.36
220 221 6.425577 TGTACTCATATAAAACGTTTGGCC 57.574 37.500 15.46 0.00 0.00 5.36
221 222 9.429600 GTATTGTACTCATATAAAACGTTTGGC 57.570 33.333 15.46 0.00 0.00 4.52
222 223 9.925268 GGTATTGTACTCATATAAAACGTTTGG 57.075 33.333 15.46 2.69 0.00 3.28
301 302 8.665906 CCACCCCCTATATTCAAGAGTAATTTA 58.334 37.037 0.00 0.00 0.00 1.40
302 303 7.352522 TCCACCCCCTATATTCAAGAGTAATTT 59.647 37.037 0.00 0.00 0.00 1.82
303 304 6.855061 TCCACCCCCTATATTCAAGAGTAATT 59.145 38.462 0.00 0.00 0.00 1.40
304 305 6.399013 TCCACCCCCTATATTCAAGAGTAAT 58.601 40.000 0.00 0.00 0.00 1.89
305 306 5.795079 TCCACCCCCTATATTCAAGAGTAA 58.205 41.667 0.00 0.00 0.00 2.24
306 307 5.403512 CTCCACCCCCTATATTCAAGAGTA 58.596 45.833 0.00 0.00 0.00 2.59
307 308 4.235372 CTCCACCCCCTATATTCAAGAGT 58.765 47.826 0.00 0.00 0.00 3.24
308 309 3.008485 GCTCCACCCCCTATATTCAAGAG 59.992 52.174 0.00 0.00 0.00 2.85
309 310 2.979678 GCTCCACCCCCTATATTCAAGA 59.020 50.000 0.00 0.00 0.00 3.02
310 311 2.711009 TGCTCCACCCCCTATATTCAAG 59.289 50.000 0.00 0.00 0.00 3.02
311 312 2.441750 GTGCTCCACCCCCTATATTCAA 59.558 50.000 0.00 0.00 0.00 2.69
312 313 2.054799 GTGCTCCACCCCCTATATTCA 58.945 52.381 0.00 0.00 0.00 2.57
313 314 2.861147 GTGCTCCACCCCCTATATTC 57.139 55.000 0.00 0.00 0.00 1.75
387 388 7.939782 TGGTTGGATTACTTAATGCATACATG 58.060 34.615 0.00 0.00 42.31 3.21
388 389 8.710749 ATGGTTGGATTACTTAATGCATACAT 57.289 30.769 0.00 8.54 42.31 2.29
389 390 7.230510 GGATGGTTGGATTACTTAATGCATACA 59.769 37.037 0.00 6.94 42.31 2.29
390 391 7.230510 TGGATGGTTGGATTACTTAATGCATAC 59.769 37.037 0.00 5.91 42.31 2.39
391 392 7.293828 TGGATGGTTGGATTACTTAATGCATA 58.706 34.615 0.00 0.00 42.31 3.14
392 393 6.135454 TGGATGGTTGGATTACTTAATGCAT 58.865 36.000 4.26 0.00 42.31 3.96
393 394 5.514169 TGGATGGTTGGATTACTTAATGCA 58.486 37.500 0.00 0.00 41.33 3.96
394 395 6.655078 ATGGATGGTTGGATTACTTAATGC 57.345 37.500 0.00 0.00 34.99 3.56
395 396 9.003658 GTCTATGGATGGTTGGATTACTTAATG 57.996 37.037 0.00 0.00 0.00 1.90
396 397 8.949421 AGTCTATGGATGGTTGGATTACTTAAT 58.051 33.333 0.00 0.00 0.00 1.40
397 398 8.210946 CAGTCTATGGATGGTTGGATTACTTAA 58.789 37.037 0.00 0.00 0.00 1.85
398 399 7.735917 CAGTCTATGGATGGTTGGATTACTTA 58.264 38.462 0.00 0.00 0.00 2.24
399 400 6.595682 CAGTCTATGGATGGTTGGATTACTT 58.404 40.000 0.00 0.00 0.00 2.24
400 401 6.179906 CAGTCTATGGATGGTTGGATTACT 57.820 41.667 0.00 0.00 0.00 2.24
424 425 1.623163 CTAGACTGTAGGGGCTAGGC 58.377 60.000 8.00 8.00 0.00 3.93
425 426 1.146152 AGCTAGACTGTAGGGGCTAGG 59.854 57.143 6.52 0.00 32.86 3.02
426 427 2.235016 CAGCTAGACTGTAGGGGCTAG 58.765 57.143 0.00 0.43 41.86 3.42
427 428 2.366640 CAGCTAGACTGTAGGGGCTA 57.633 55.000 0.00 0.00 41.86 3.93
428 429 3.215671 CAGCTAGACTGTAGGGGCT 57.784 57.895 0.00 0.00 41.86 5.19
443 444 3.379445 ATGTTGGGCAGCAGCAGC 61.379 61.111 2.65 0.00 44.61 5.25
444 445 2.571757 CATGTTGGGCAGCAGCAG 59.428 61.111 2.65 0.00 44.61 4.24
445 446 3.687102 GCATGTTGGGCAGCAGCA 61.687 61.111 2.65 0.00 44.61 4.41
446 447 2.515996 ATTGCATGTTGGGCAGCAGC 62.516 55.000 0.00 0.00 43.05 5.25
447 448 0.036765 AATTGCATGTTGGGCAGCAG 60.037 50.000 0.00 0.00 43.05 4.24
448 449 0.037139 GAATTGCATGTTGGGCAGCA 60.037 50.000 0.00 0.00 43.05 4.41
449 450 0.037139 TGAATTGCATGTTGGGCAGC 60.037 50.000 0.00 0.00 43.05 5.25
450 451 2.546778 GATGAATTGCATGTTGGGCAG 58.453 47.619 0.00 0.00 43.05 4.85
451 452 1.207570 GGATGAATTGCATGTTGGGCA 59.792 47.619 0.00 0.00 37.34 5.36
452 453 1.207570 TGGATGAATTGCATGTTGGGC 59.792 47.619 0.00 0.00 37.34 5.36
453 454 3.493699 GGATGGATGAATTGCATGTTGGG 60.494 47.826 0.00 0.00 36.38 4.12
454 455 3.133183 TGGATGGATGAATTGCATGTTGG 59.867 43.478 0.00 0.00 36.38 3.77
455 456 4.394439 TGGATGGATGAATTGCATGTTG 57.606 40.909 0.00 0.00 36.38 3.33
456 457 6.015688 GTCTATGGATGGATGAATTGCATGTT 60.016 38.462 0.00 0.00 36.38 2.71
457 458 5.475909 GTCTATGGATGGATGAATTGCATGT 59.524 40.000 0.00 0.00 36.38 3.21
458 459 5.710567 AGTCTATGGATGGATGAATTGCATG 59.289 40.000 0.00 0.00 36.38 4.06
459 460 5.710567 CAGTCTATGGATGGATGAATTGCAT 59.289 40.000 0.00 0.00 39.39 3.96
460 461 5.067954 CAGTCTATGGATGGATGAATTGCA 58.932 41.667 0.00 0.00 0.00 4.08
461 462 5.624344 CAGTCTATGGATGGATGAATTGC 57.376 43.478 0.00 0.00 0.00 3.56
475 476 4.720046 TGTAGAGGCTAGTCCAGTCTATG 58.280 47.826 6.07 0.00 40.13 2.23
476 477 4.414182 ACTGTAGAGGCTAGTCCAGTCTAT 59.586 45.833 0.00 0.00 40.13 1.98
477 478 3.781407 ACTGTAGAGGCTAGTCCAGTCTA 59.219 47.826 0.00 0.00 40.13 2.59
478 479 2.578940 ACTGTAGAGGCTAGTCCAGTCT 59.421 50.000 0.00 0.00 43.83 3.24
479 480 3.007473 ACTGTAGAGGCTAGTCCAGTC 57.993 52.381 0.00 0.00 37.29 3.51
480 481 3.686120 GCTACTGTAGAGGCTAGTCCAGT 60.686 52.174 18.64 8.68 37.29 4.00
481 482 2.882137 GCTACTGTAGAGGCTAGTCCAG 59.118 54.545 18.64 2.00 37.29 3.86
482 483 2.510382 AGCTACTGTAGAGGCTAGTCCA 59.490 50.000 18.64 0.00 37.29 4.02
483 484 2.882137 CAGCTACTGTAGAGGCTAGTCC 59.118 54.545 18.64 0.00 33.43 3.85
484 485 2.292292 GCAGCTACTGTAGAGGCTAGTC 59.708 54.545 18.64 0.00 33.43 2.59
485 486 2.092103 AGCAGCTACTGTAGAGGCTAGT 60.092 50.000 23.43 8.10 35.75 2.57
486 487 2.293122 CAGCAGCTACTGTAGAGGCTAG 59.707 54.545 23.90 17.27 35.75 3.42
487 488 2.302260 CAGCAGCTACTGTAGAGGCTA 58.698 52.381 23.90 0.00 35.75 3.93
488 489 1.110442 CAGCAGCTACTGTAGAGGCT 58.890 55.000 18.64 19.92 37.24 4.58
489 490 0.529555 GCAGCAGCTACTGTAGAGGC 60.530 60.000 18.64 18.21 39.96 4.70
490 491 0.820226 TGCAGCAGCTACTGTAGAGG 59.180 55.000 18.64 9.90 42.74 3.69
491 492 2.471818 CATGCAGCAGCTACTGTAGAG 58.528 52.381 18.64 10.56 42.74 2.43
492 493 1.472201 GCATGCAGCAGCTACTGTAGA 60.472 52.381 18.64 0.81 44.79 2.59
493 494 0.935898 GCATGCAGCAGCTACTGTAG 59.064 55.000 14.21 10.48 44.79 2.74
494 495 3.070076 GCATGCAGCAGCTACTGTA 57.930 52.632 14.21 11.51 44.79 2.74
495 496 3.900855 GCATGCAGCAGCTACTGT 58.099 55.556 14.21 0.00 44.79 3.55
512 513 7.197703 TGAGCTGATAATATTTGCATGTGTTG 58.802 34.615 0.00 0.00 0.00 3.33
513 514 7.337480 TGAGCTGATAATATTTGCATGTGTT 57.663 32.000 0.00 0.00 0.00 3.32
514 515 6.947644 TGAGCTGATAATATTTGCATGTGT 57.052 33.333 0.00 0.00 0.00 3.72
515 516 7.645402 TCTTGAGCTGATAATATTTGCATGTG 58.355 34.615 0.00 0.00 0.00 3.21
516 517 7.040617 CCTCTTGAGCTGATAATATTTGCATGT 60.041 37.037 0.00 0.00 0.00 3.21
517 518 7.174426 TCCTCTTGAGCTGATAATATTTGCATG 59.826 37.037 0.00 0.00 0.00 4.06
518 519 7.229308 TCCTCTTGAGCTGATAATATTTGCAT 58.771 34.615 0.00 0.00 0.00 3.96
519 520 6.594744 TCCTCTTGAGCTGATAATATTTGCA 58.405 36.000 0.00 0.00 0.00 4.08
520 521 6.933521 TCTCCTCTTGAGCTGATAATATTTGC 59.066 38.462 0.00 0.00 41.18 3.68
521 522 8.537049 CTCTCCTCTTGAGCTGATAATATTTG 57.463 38.462 0.00 0.00 41.18 2.32
534 535 1.673920 GACGGTAGCTCTCCTCTTGAG 59.326 57.143 0.00 0.00 42.90 3.02
535 536 1.004394 TGACGGTAGCTCTCCTCTTGA 59.996 52.381 0.00 0.00 0.00 3.02
536 537 1.464734 TGACGGTAGCTCTCCTCTTG 58.535 55.000 0.00 0.00 0.00 3.02
537 538 2.217510 TTGACGGTAGCTCTCCTCTT 57.782 50.000 0.00 0.00 0.00 2.85
538 539 2.096248 CTTTGACGGTAGCTCTCCTCT 58.904 52.381 0.00 0.00 0.00 3.69
539 540 1.819903 ACTTTGACGGTAGCTCTCCTC 59.180 52.381 0.00 0.00 0.00 3.71
540 541 1.819903 GACTTTGACGGTAGCTCTCCT 59.180 52.381 0.00 0.00 0.00 3.69
541 542 1.819903 AGACTTTGACGGTAGCTCTCC 59.180 52.381 0.00 0.00 0.00 3.71
542 543 3.579335 AAGACTTTGACGGTAGCTCTC 57.421 47.619 0.00 0.00 0.00 3.20
543 544 4.338379 AAAAGACTTTGACGGTAGCTCT 57.662 40.909 0.06 0.00 0.00 4.09
544 545 4.089636 CGTAAAAGACTTTGACGGTAGCTC 59.910 45.833 24.58 0.00 0.00 4.09
545 546 3.985925 CGTAAAAGACTTTGACGGTAGCT 59.014 43.478 24.58 0.00 0.00 3.32
546 547 3.122445 CCGTAAAAGACTTTGACGGTAGC 59.878 47.826 34.90 4.01 46.20 3.58
547 548 4.898328 CCGTAAAAGACTTTGACGGTAG 57.102 45.455 34.90 18.71 46.20 3.18
551 552 4.301628 ACCTACCGTAAAAGACTTTGACG 58.698 43.478 25.12 25.12 0.00 4.35
552 553 8.986477 TTATACCTACCGTAAAAGACTTTGAC 57.014 34.615 5.44 5.44 0.00 3.18
553 554 9.423061 GTTTATACCTACCGTAAAAGACTTTGA 57.577 33.333 0.06 0.00 0.00 2.69
554 555 9.428097 AGTTTATACCTACCGTAAAAGACTTTG 57.572 33.333 0.06 0.00 0.00 2.77
555 556 9.428097 CAGTTTATACCTACCGTAAAAGACTTT 57.572 33.333 0.00 0.00 0.00 2.66
556 557 8.037166 CCAGTTTATACCTACCGTAAAAGACTT 58.963 37.037 0.00 0.00 0.00 3.01
557 558 7.550712 CCAGTTTATACCTACCGTAAAAGACT 58.449 38.462 0.00 0.00 0.00 3.24
558 559 6.256539 GCCAGTTTATACCTACCGTAAAAGAC 59.743 42.308 0.00 0.00 0.00 3.01
559 560 6.155049 AGCCAGTTTATACCTACCGTAAAAGA 59.845 38.462 0.00 0.00 0.00 2.52
560 561 6.343703 AGCCAGTTTATACCTACCGTAAAAG 58.656 40.000 0.00 0.00 0.00 2.27
561 562 6.298441 AGCCAGTTTATACCTACCGTAAAA 57.702 37.500 0.00 0.00 0.00 1.52
562 563 5.937975 AGCCAGTTTATACCTACCGTAAA 57.062 39.130 0.00 0.00 0.00 2.01
563 564 6.039717 CAGTAGCCAGTTTATACCTACCGTAA 59.960 42.308 0.00 0.00 31.15 3.18
564 565 5.532406 CAGTAGCCAGTTTATACCTACCGTA 59.468 44.000 0.00 0.00 31.15 4.02
565 566 4.340381 CAGTAGCCAGTTTATACCTACCGT 59.660 45.833 0.00 0.00 31.15 4.83
566 567 4.340381 ACAGTAGCCAGTTTATACCTACCG 59.660 45.833 0.00 0.00 31.15 4.02
567 568 5.361857 TGACAGTAGCCAGTTTATACCTACC 59.638 44.000 0.00 0.00 31.15 3.18
568 569 6.461110 TGACAGTAGCCAGTTTATACCTAC 57.539 41.667 0.00 0.00 0.00 3.18
569 570 7.398047 TCTTTGACAGTAGCCAGTTTATACCTA 59.602 37.037 0.00 0.00 0.00 3.08
570 571 6.212791 TCTTTGACAGTAGCCAGTTTATACCT 59.787 38.462 0.00 0.00 0.00 3.08
571 572 6.313164 GTCTTTGACAGTAGCCAGTTTATACC 59.687 42.308 0.00 0.00 32.09 2.73
572 573 7.097834 AGTCTTTGACAGTAGCCAGTTTATAC 58.902 38.462 0.46 0.00 34.60 1.47
573 574 7.241042 AGTCTTTGACAGTAGCCAGTTTATA 57.759 36.000 0.46 0.00 34.60 0.98
574 575 6.115448 AGTCTTTGACAGTAGCCAGTTTAT 57.885 37.500 0.46 0.00 34.60 1.40
575 576 5.546621 AGTCTTTGACAGTAGCCAGTTTA 57.453 39.130 0.46 0.00 34.60 2.01
576 577 4.423625 AGTCTTTGACAGTAGCCAGTTT 57.576 40.909 0.46 0.00 34.60 2.66
577 578 5.246203 TCATAGTCTTTGACAGTAGCCAGTT 59.754 40.000 0.46 0.00 34.60 3.16
578 579 4.772624 TCATAGTCTTTGACAGTAGCCAGT 59.227 41.667 0.46 0.00 34.60 4.00
579 580 5.105752 GTCATAGTCTTTGACAGTAGCCAG 58.894 45.833 16.01 0.00 42.43 4.85
580 581 4.380550 CGTCATAGTCTTTGACAGTAGCCA 60.381 45.833 19.46 0.00 42.90 4.75
581 582 4.106197 CGTCATAGTCTTTGACAGTAGCC 58.894 47.826 19.46 0.00 42.90 3.93
582 583 4.106197 CCGTCATAGTCTTTGACAGTAGC 58.894 47.826 19.46 0.00 42.90 3.58
583 584 5.312120 ACCGTCATAGTCTTTGACAGTAG 57.688 43.478 19.46 9.81 42.90 2.57
584 585 5.356190 CCTACCGTCATAGTCTTTGACAGTA 59.644 44.000 19.46 17.02 42.90 2.74
585 586 4.158025 CCTACCGTCATAGTCTTTGACAGT 59.842 45.833 19.46 16.85 42.90 3.55
586 587 4.440250 CCCTACCGTCATAGTCTTTGACAG 60.440 50.000 19.46 12.75 42.90 3.51
587 588 3.446161 CCCTACCGTCATAGTCTTTGACA 59.554 47.826 19.46 3.83 42.90 3.58
588 589 3.446516 ACCCTACCGTCATAGTCTTTGAC 59.553 47.826 12.09 12.09 40.06 3.18
589 590 3.698040 GACCCTACCGTCATAGTCTTTGA 59.302 47.826 0.00 0.00 32.74 2.69
590 591 3.700038 AGACCCTACCGTCATAGTCTTTG 59.300 47.826 0.00 0.00 35.07 2.77
591 592 3.978610 AGACCCTACCGTCATAGTCTTT 58.021 45.455 0.00 0.00 35.07 2.52
592 593 3.666345 AGACCCTACCGTCATAGTCTT 57.334 47.619 0.00 0.00 35.07 3.01
593 594 3.666345 AAGACCCTACCGTCATAGTCT 57.334 47.619 0.00 0.00 36.17 3.24
594 595 4.732672 AAAAGACCCTACCGTCATAGTC 57.267 45.455 0.00 0.00 35.07 2.59
595 596 4.529377 TGAAAAAGACCCTACCGTCATAGT 59.471 41.667 0.00 0.00 35.07 2.12
596 597 5.080969 TGAAAAAGACCCTACCGTCATAG 57.919 43.478 0.00 0.00 35.07 2.23
597 598 5.687166 ATGAAAAAGACCCTACCGTCATA 57.313 39.130 0.00 0.00 35.07 2.15
598 599 4.569719 ATGAAAAAGACCCTACCGTCAT 57.430 40.909 0.00 0.00 35.07 3.06
599 600 5.687166 ATATGAAAAAGACCCTACCGTCA 57.313 39.130 0.00 0.00 35.07 4.35
600 601 8.496707 TTTAATATGAAAAAGACCCTACCGTC 57.503 34.615 0.00 0.00 0.00 4.79
601 602 8.899771 CATTTAATATGAAAAAGACCCTACCGT 58.100 33.333 0.00 0.00 0.00 4.83
602 603 8.349983 CCATTTAATATGAAAAAGACCCTACCG 58.650 37.037 0.00 0.00 0.00 4.02
603 604 8.638873 CCCATTTAATATGAAAAAGACCCTACC 58.361 37.037 0.00 0.00 0.00 3.18
604 605 8.141909 GCCCATTTAATATGAAAAAGACCCTAC 58.858 37.037 0.00 0.00 0.00 3.18
605 606 7.013846 CGCCCATTTAATATGAAAAAGACCCTA 59.986 37.037 0.00 0.00 0.00 3.53
606 607 6.183360 CGCCCATTTAATATGAAAAAGACCCT 60.183 38.462 0.00 0.00 0.00 4.34
607 608 5.983118 CGCCCATTTAATATGAAAAAGACCC 59.017 40.000 0.00 0.00 0.00 4.46
608 609 6.475402 CACGCCCATTTAATATGAAAAAGACC 59.525 38.462 0.00 0.00 0.00 3.85
609 610 7.220108 GTCACGCCCATTTAATATGAAAAAGAC 59.780 37.037 0.00 0.00 0.00 3.01
610 611 7.254852 GTCACGCCCATTTAATATGAAAAAGA 58.745 34.615 0.00 0.00 0.00 2.52
611 612 6.196353 CGTCACGCCCATTTAATATGAAAAAG 59.804 38.462 0.00 0.00 0.00 2.27
612 613 6.030849 CGTCACGCCCATTTAATATGAAAAA 58.969 36.000 0.00 0.00 0.00 1.94
613 614 5.449314 CCGTCACGCCCATTTAATATGAAAA 60.449 40.000 0.00 0.00 0.00 2.29
614 615 4.035792 CCGTCACGCCCATTTAATATGAAA 59.964 41.667 0.00 0.00 0.00 2.69
615 616 3.562141 CCGTCACGCCCATTTAATATGAA 59.438 43.478 0.00 0.00 0.00 2.57
616 617 3.135225 CCGTCACGCCCATTTAATATGA 58.865 45.455 0.00 0.00 0.00 2.15
617 618 2.875933 ACCGTCACGCCCATTTAATATG 59.124 45.455 0.00 0.00 0.00 1.78
618 619 2.875933 CACCGTCACGCCCATTTAATAT 59.124 45.455 0.00 0.00 0.00 1.28
619 620 2.281517 CACCGTCACGCCCATTTAATA 58.718 47.619 0.00 0.00 0.00 0.98
620 621 1.091537 CACCGTCACGCCCATTTAAT 58.908 50.000 0.00 0.00 0.00 1.40
621 622 1.579084 GCACCGTCACGCCCATTTAA 61.579 55.000 0.00 0.00 0.00 1.52
622 623 2.036006 GCACCGTCACGCCCATTTA 61.036 57.895 0.00 0.00 0.00 1.40
623 624 3.361977 GCACCGTCACGCCCATTT 61.362 61.111 0.00 0.00 0.00 2.32
630 631 1.689352 GATTTACCGGCACCGTCACG 61.689 60.000 0.00 0.00 37.81 4.35
631 632 0.671163 TGATTTACCGGCACCGTCAC 60.671 55.000 0.00 0.00 37.81 3.67
632 633 0.250793 ATGATTTACCGGCACCGTCA 59.749 50.000 0.00 5.10 37.81 4.35
633 634 2.228138 TATGATTTACCGGCACCGTC 57.772 50.000 0.00 0.00 37.81 4.79
634 635 2.875933 CAATATGATTTACCGGCACCGT 59.124 45.455 0.00 0.00 37.81 4.83
635 636 2.875933 ACAATATGATTTACCGGCACCG 59.124 45.455 0.00 1.02 39.44 4.94
636 637 4.911514 AACAATATGATTTACCGGCACC 57.088 40.909 0.00 0.00 0.00 5.01
637 638 6.854496 TCTAACAATATGATTTACCGGCAC 57.146 37.500 0.00 0.00 0.00 5.01
638 639 7.450074 AGATCTAACAATATGATTTACCGGCA 58.550 34.615 0.00 0.00 0.00 5.69
639 640 7.907214 AGATCTAACAATATGATTTACCGGC 57.093 36.000 0.00 0.00 0.00 6.13
646 647 9.396022 ACCGTCAAAAGATCTAACAATATGATT 57.604 29.630 0.00 0.00 0.00 2.57
647 648 8.964476 ACCGTCAAAAGATCTAACAATATGAT 57.036 30.769 0.00 0.00 0.00 2.45
648 649 9.529325 CTACCGTCAAAAGATCTAACAATATGA 57.471 33.333 0.00 0.00 0.00 2.15
649 650 8.765219 CCTACCGTCAAAAGATCTAACAATATG 58.235 37.037 0.00 0.00 0.00 1.78
650 651 8.483758 ACCTACCGTCAAAAGATCTAACAATAT 58.516 33.333 0.00 0.00 0.00 1.28
651 652 7.844009 ACCTACCGTCAAAAGATCTAACAATA 58.156 34.615 0.00 0.00 0.00 1.90
652 653 6.708285 ACCTACCGTCAAAAGATCTAACAAT 58.292 36.000 0.00 0.00 0.00 2.71
653 654 6.105397 ACCTACCGTCAAAAGATCTAACAA 57.895 37.500 0.00 0.00 0.00 2.83
654 655 5.733620 ACCTACCGTCAAAAGATCTAACA 57.266 39.130 0.00 0.00 0.00 2.41
655 656 5.930569 ACAACCTACCGTCAAAAGATCTAAC 59.069 40.000 0.00 0.00 0.00 2.34
656 657 5.929992 CACAACCTACCGTCAAAAGATCTAA 59.070 40.000 0.00 0.00 0.00 2.10
657 658 5.475719 CACAACCTACCGTCAAAAGATCTA 58.524 41.667 0.00 0.00 0.00 1.98
658 659 4.315803 CACAACCTACCGTCAAAAGATCT 58.684 43.478 0.00 0.00 0.00 2.75
659 660 3.120304 GCACAACCTACCGTCAAAAGATC 60.120 47.826 0.00 0.00 0.00 2.75
660 661 2.812011 GCACAACCTACCGTCAAAAGAT 59.188 45.455 0.00 0.00 0.00 2.40
661 662 2.158871 AGCACAACCTACCGTCAAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
662 663 2.218603 AGCACAACCTACCGTCAAAAG 58.781 47.619 0.00 0.00 0.00 2.27
663 664 2.335316 AGCACAACCTACCGTCAAAA 57.665 45.000 0.00 0.00 0.00 2.44
664 665 2.548493 GGTAGCACAACCTACCGTCAAA 60.548 50.000 2.91 0.00 45.58 2.69
665 666 1.001181 GGTAGCACAACCTACCGTCAA 59.999 52.381 2.91 0.00 45.58 3.18
666 667 0.604578 GGTAGCACAACCTACCGTCA 59.395 55.000 2.91 0.00 45.58 4.35
667 668 3.430779 GGTAGCACAACCTACCGTC 57.569 57.895 2.91 0.00 45.58 4.79
671 672 2.692041 ACGATAGGGTAGCACAACCTAC 59.308 50.000 4.38 0.00 39.50 3.18
672 673 2.954318 GACGATAGGGTAGCACAACCTA 59.046 50.000 4.74 4.74 40.84 3.08
673 674 1.755380 GACGATAGGGTAGCACAACCT 59.245 52.381 0.11 0.11 39.65 3.50
674 675 1.535437 CGACGATAGGGTAGCACAACC 60.535 57.143 0.00 0.00 43.77 3.77
675 676 1.402968 TCGACGATAGGGTAGCACAAC 59.597 52.381 0.00 0.00 43.77 3.32
676 677 1.674441 CTCGACGATAGGGTAGCACAA 59.326 52.381 0.00 0.00 43.77 3.33
677 678 1.306148 CTCGACGATAGGGTAGCACA 58.694 55.000 0.00 0.00 43.77 4.57
678 679 0.592148 CCTCGACGATAGGGTAGCAC 59.408 60.000 0.00 0.00 43.77 4.40
679 680 0.182061 ACCTCGACGATAGGGTAGCA 59.818 55.000 5.53 0.00 38.54 3.49
680 681 0.873721 GACCTCGACGATAGGGTAGC 59.126 60.000 7.20 0.00 38.54 3.58
681 682 2.251409 TGACCTCGACGATAGGGTAG 57.749 55.000 7.20 0.00 38.54 3.18
682 683 2.715749 TTGACCTCGACGATAGGGTA 57.284 50.000 7.20 0.00 38.54 3.69
683 684 1.681793 CATTGACCTCGACGATAGGGT 59.318 52.381 6.95 6.95 38.54 4.34
684 685 1.000163 CCATTGACCTCGACGATAGGG 60.000 57.143 7.92 4.29 38.54 3.53
685 686 1.603172 GCCATTGACCTCGACGATAGG 60.603 57.143 0.00 0.00 43.77 2.57
686 687 1.772182 GCCATTGACCTCGACGATAG 58.228 55.000 0.00 0.00 46.19 2.08
687 688 0.030235 CGCCATTGACCTCGACGATA 59.970 55.000 0.00 0.00 0.00 2.92
688 689 1.226974 CGCCATTGACCTCGACGAT 60.227 57.895 0.00 0.00 0.00 3.73
689 690 2.180769 CGCCATTGACCTCGACGA 59.819 61.111 0.00 0.00 0.00 4.20
690 691 2.274232 TACCGCCATTGACCTCGACG 62.274 60.000 0.00 0.00 0.00 5.12
691 692 0.108520 TTACCGCCATTGACCTCGAC 60.109 55.000 0.00 0.00 0.00 4.20
692 693 0.609151 TTTACCGCCATTGACCTCGA 59.391 50.000 0.00 0.00 0.00 4.04
693 694 1.444836 TTTTACCGCCATTGACCTCG 58.555 50.000 0.00 0.00 0.00 4.63
731 732 7.491696 CGGATCTAACTCTAGTTCGGAATTTTT 59.508 37.037 0.00 0.00 39.31 1.94
732 733 6.979238 CGGATCTAACTCTAGTTCGGAATTTT 59.021 38.462 0.00 0.00 39.31 1.82
733 734 6.461231 CCGGATCTAACTCTAGTTCGGAATTT 60.461 42.308 12.21 0.00 39.31 1.82
734 735 5.009811 CCGGATCTAACTCTAGTTCGGAATT 59.990 44.000 12.21 0.00 39.31 2.17
735 736 4.519730 CCGGATCTAACTCTAGTTCGGAAT 59.480 45.833 12.21 0.00 39.31 3.01
736 737 3.881688 CCGGATCTAACTCTAGTTCGGAA 59.118 47.826 12.21 0.00 39.31 4.30
737 738 3.118112 ACCGGATCTAACTCTAGTTCGGA 60.118 47.826 20.33 11.74 39.31 4.55
738 739 3.212685 ACCGGATCTAACTCTAGTTCGG 58.787 50.000 9.46 14.74 39.31 4.30
739 740 4.897025 AACCGGATCTAACTCTAGTTCG 57.103 45.455 9.46 0.00 39.31 3.95
740 741 7.770201 AGTTTAACCGGATCTAACTCTAGTTC 58.230 38.462 9.46 0.00 39.31 3.01
741 742 7.715266 AGTTTAACCGGATCTAACTCTAGTT 57.285 36.000 9.46 0.39 41.73 2.24
742 743 7.715266 AAGTTTAACCGGATCTAACTCTAGT 57.285 36.000 9.46 0.00 0.00 2.57
743 744 8.999220 AAAAGTTTAACCGGATCTAACTCTAG 57.001 34.615 9.46 0.00 0.00 2.43
744 745 7.756722 CGAAAAGTTTAACCGGATCTAACTCTA 59.243 37.037 9.46 0.00 0.00 2.43
745 746 6.589139 CGAAAAGTTTAACCGGATCTAACTCT 59.411 38.462 9.46 1.55 0.00 3.24
746 747 6.587608 TCGAAAAGTTTAACCGGATCTAACTC 59.412 38.462 9.46 0.00 0.00 3.01
747 748 6.458210 TCGAAAAGTTTAACCGGATCTAACT 58.542 36.000 9.46 7.42 0.00 2.24
748 749 6.710692 TCGAAAAGTTTAACCGGATCTAAC 57.289 37.500 9.46 4.90 0.00 2.34
749 750 7.727331 TTTCGAAAAGTTTAACCGGATCTAA 57.273 32.000 9.46 0.00 0.00 2.10
750 751 7.095102 CCTTTTCGAAAAGTTTAACCGGATCTA 60.095 37.037 36.02 8.04 42.92 1.98
751 752 6.293790 CCTTTTCGAAAAGTTTAACCGGATCT 60.294 38.462 36.02 0.00 42.92 2.75
752 753 5.854866 CCTTTTCGAAAAGTTTAACCGGATC 59.145 40.000 36.02 0.00 42.92 3.36
753 754 5.278610 CCCTTTTCGAAAAGTTTAACCGGAT 60.279 40.000 36.02 0.00 42.92 4.18
754 755 4.036616 CCCTTTTCGAAAAGTTTAACCGGA 59.963 41.667 36.02 9.51 42.92 5.14
755 756 4.202040 ACCCTTTTCGAAAAGTTTAACCGG 60.202 41.667 36.02 30.40 42.92 5.28
756 757 4.923893 ACCCTTTTCGAAAAGTTTAACCG 58.076 39.130 36.02 23.79 42.92 4.44
757 758 4.971830 CGACCCTTTTCGAAAAGTTTAACC 59.028 41.667 36.02 22.14 42.92 2.85
758 759 5.809464 TCGACCCTTTTCGAAAAGTTTAAC 58.191 37.500 36.02 24.27 44.86 2.01
768 769 1.134461 TGGTGTTTCGACCCTTTTCGA 60.134 47.619 0.00 0.00 46.12 3.71
769 770 1.301423 TGGTGTTTCGACCCTTTTCG 58.699 50.000 0.00 0.00 40.53 3.46
770 771 2.424246 TGTTGGTGTTTCGACCCTTTTC 59.576 45.455 0.00 0.00 34.79 2.29
771 772 2.448453 TGTTGGTGTTTCGACCCTTTT 58.552 42.857 0.00 0.00 34.79 2.27
772 773 2.131776 TGTTGGTGTTTCGACCCTTT 57.868 45.000 0.00 0.00 34.79 3.11
773 774 2.358322 ATGTTGGTGTTTCGACCCTT 57.642 45.000 0.00 0.00 34.79 3.95
774 775 1.953686 CAATGTTGGTGTTTCGACCCT 59.046 47.619 0.00 0.00 34.79 4.34
775 776 1.000717 CCAATGTTGGTGTTTCGACCC 60.001 52.381 3.58 0.00 43.43 4.46
776 777 2.415697 CCAATGTTGGTGTTTCGACC 57.584 50.000 3.58 0.00 43.43 4.79
787 788 1.260561 GTATACGCGAGGCCAATGTTG 59.739 52.381 15.93 0.00 0.00 3.33
788 789 1.134640 TGTATACGCGAGGCCAATGTT 60.135 47.619 15.93 0.00 0.00 2.71
789 790 0.462375 TGTATACGCGAGGCCAATGT 59.538 50.000 15.93 0.00 0.00 2.71
790 791 1.726791 GATGTATACGCGAGGCCAATG 59.273 52.381 15.93 0.00 0.00 2.82
791 792 1.618837 AGATGTATACGCGAGGCCAAT 59.381 47.619 15.93 0.00 0.00 3.16
792 793 1.000607 GAGATGTATACGCGAGGCCAA 60.001 52.381 15.93 0.00 0.00 4.52
793 794 0.596577 GAGATGTATACGCGAGGCCA 59.403 55.000 15.93 4.21 0.00 5.36
794 795 0.109226 GGAGATGTATACGCGAGGCC 60.109 60.000 15.93 0.00 0.00 5.19
795 796 0.882474 AGGAGATGTATACGCGAGGC 59.118 55.000 15.93 0.00 0.00 4.70
796 797 2.293677 ACAAGGAGATGTATACGCGAGG 59.706 50.000 15.93 0.00 0.00 4.63
952 957 3.064324 GGCCTGGTGTGGATGCAC 61.064 66.667 10.90 10.90 38.56 4.57
1037 1042 1.174078 TACAGACAGGGCGTTCGACA 61.174 55.000 0.00 0.00 0.00 4.35
1068 1073 6.947644 TGATATGCATGCAGTATCTGTTTT 57.052 33.333 29.55 15.68 33.43 2.43
1100 1213 9.962759 GTGATAATCAAATCAAAATGAAGTTGC 57.037 29.630 0.00 0.00 37.61 4.17
1112 1225 7.475015 GCAAGCAAGTAGTGATAATCAAATCA 58.525 34.615 0.00 0.00 33.48 2.57
1113 1226 6.630443 CGCAAGCAAGTAGTGATAATCAAATC 59.370 38.462 0.00 0.00 0.00 2.17
1114 1227 6.489675 CGCAAGCAAGTAGTGATAATCAAAT 58.510 36.000 0.00 0.00 0.00 2.32
1133 1246 2.932498 TCTTTGCATTACAAGCGCAAG 58.068 42.857 11.47 3.32 45.58 4.01
1137 1250 3.093574 CACGATCTTTGCATTACAAGCG 58.906 45.455 0.00 0.00 40.06 4.68
1143 1256 5.022282 TCATCTCCACGATCTTTGCATTA 57.978 39.130 0.00 0.00 0.00 1.90
1151 1264 2.169144 TGCACATTCATCTCCACGATCT 59.831 45.455 0.00 0.00 0.00 2.75
1170 1283 2.821366 CCCTCGCAGTCCATGTGC 60.821 66.667 0.00 0.00 39.38 4.57
1235 1348 3.551863 GCTGAACGATGATCGAGGATCTT 60.552 47.826 22.88 3.66 43.74 2.40
1236 1349 2.030363 GCTGAACGATGATCGAGGATCT 60.030 50.000 22.88 0.00 43.74 2.75
1237 1350 2.287849 TGCTGAACGATGATCGAGGATC 60.288 50.000 22.88 13.43 43.74 3.36
1240 1353 1.066152 TCTGCTGAACGATGATCGAGG 59.934 52.381 22.88 8.94 43.74 4.63
1241 1354 2.481903 TCTGCTGAACGATGATCGAG 57.518 50.000 22.88 9.71 43.74 4.04
1243 1356 2.667969 TGTTTCTGCTGAACGATGATCG 59.332 45.455 14.01 14.01 46.93 3.69
1244 1357 3.482598 CGTGTTTCTGCTGAACGATGATC 60.483 47.826 5.41 0.00 31.02 2.92
1248 1361 1.865865 ACGTGTTTCTGCTGAACGAT 58.134 45.000 19.13 5.02 31.02 3.73
1251 1364 1.396815 GCGTACGTGTTTCTGCTGAAC 60.397 52.381 17.90 2.76 31.02 3.18
1271 1384 2.511373 TTAGCTGGACCGCATGCG 60.511 61.111 32.60 32.60 39.44 4.73
1274 1387 0.176680 CAGAGTTAGCTGGACCGCAT 59.823 55.000 0.00 0.26 32.26 4.73
1275 1388 1.185618 ACAGAGTTAGCTGGACCGCA 61.186 55.000 0.00 0.00 40.20 5.69
1276 1389 0.458716 GACAGAGTTAGCTGGACCGC 60.459 60.000 0.00 0.68 40.20 5.68
1278 1391 0.889306 ACGACAGAGTTAGCTGGACC 59.111 55.000 0.00 0.00 40.20 4.46
1279 1392 1.983972 CACGACAGAGTTAGCTGGAC 58.016 55.000 0.00 0.00 40.20 4.02
1280 1393 0.243907 GCACGACAGAGTTAGCTGGA 59.756 55.000 0.00 0.00 40.20 3.86
1281 1394 1.073216 CGCACGACAGAGTTAGCTGG 61.073 60.000 0.00 0.00 40.20 4.85
1282 1395 0.387367 ACGCACGACAGAGTTAGCTG 60.387 55.000 0.00 0.00 41.63 4.24
1283 1396 0.387367 CACGCACGACAGAGTTAGCT 60.387 55.000 0.00 0.00 0.00 3.32
1284 1397 1.945776 GCACGCACGACAGAGTTAGC 61.946 60.000 0.00 0.00 0.00 3.09
1285 1398 0.663269 TGCACGCACGACAGAGTTAG 60.663 55.000 0.00 0.00 0.00 2.34
1286 1399 0.663269 CTGCACGCACGACAGAGTTA 60.663 55.000 10.78 0.00 33.10 2.24
1287 1400 1.951130 CTGCACGCACGACAGAGTT 60.951 57.895 10.78 0.00 33.10 3.01
1288 1401 2.355126 CTGCACGCACGACAGAGT 60.355 61.111 10.78 0.00 33.10 3.24
1289 1402 3.108289 CCTGCACGCACGACAGAG 61.108 66.667 15.76 5.97 33.10 3.35
1307 1420 0.859374 CGATCTCGACAGTGCTCACG 60.859 60.000 0.00 0.00 43.02 4.35
1477 1632 1.683365 TAGCCGTGGAGGTGGTACC 60.683 63.158 4.43 4.43 43.70 3.34
1768 1939 2.672961 TTCCTTCGCCTGTGATGTAG 57.327 50.000 0.00 0.00 0.00 2.74
1779 1950 0.109781 TCGCAGCATTTTTCCTTCGC 60.110 50.000 0.00 0.00 0.00 4.70
1853 2024 7.912056 TTGTCAAATCCAGAGACAAGATTAG 57.088 36.000 0.00 0.00 44.60 1.73
1872 2043 1.296392 CTCCCTCCGCATGTTGTCA 59.704 57.895 0.00 0.00 0.00 3.58
2025 2199 7.556635 GCCCTTAGAAACTGTATTTCCTTGTAT 59.443 37.037 0.00 0.00 0.00 2.29
2077 2253 2.158740 TCACGGTTTGAATGGTTGAGGA 60.159 45.455 0.00 0.00 0.00 3.71
2086 2263 5.269505 TGAATGGTTTTCACGGTTTGAAT 57.730 34.783 0.00 0.00 43.99 2.57
2088 2265 4.082190 TGTTGAATGGTTTTCACGGTTTGA 60.082 37.500 0.00 0.00 0.00 2.69
2117 2308 2.094182 ACTGCGTCTTGAACCGATACAT 60.094 45.455 0.00 0.00 0.00 2.29
2127 2318 2.649034 GTCCGGACTGCGTCTTGA 59.351 61.111 27.64 0.00 32.47 3.02
2130 2321 4.039357 CACGTCCGGACTGCGTCT 62.039 66.667 30.92 7.17 36.67 4.18
2148 2339 4.358851 TGTCTTCGGTTTGCATGAAAAAG 58.641 39.130 0.00 0.00 0.00 2.27
2155 2346 1.673920 ACGTTTGTCTTCGGTTTGCAT 59.326 42.857 0.00 0.00 0.00 3.96
2201 2398 1.203001 TCAAAAGCGGGTTTGGGATCT 60.203 47.619 5.87 0.00 38.72 2.75
2295 2509 0.179009 GCTCTGGCTGGGCATGAATA 60.179 55.000 11.75 0.00 35.22 1.75
2388 2623 1.394227 GACCGTTGTGTCGTTTGAACA 59.606 47.619 0.00 0.00 0.00 3.18
2486 2721 4.415150 CACCGGTGGGCTGCAGAT 62.415 66.667 27.57 0.00 36.48 2.90
2492 2727 1.724545 TTATATAGCACCGGTGGGCT 58.275 50.000 34.58 27.78 43.94 5.19
2514 2749 1.222115 GATTGTGGCTATCGTCGGGC 61.222 60.000 0.00 0.00 0.00 6.13
2521 2777 3.321497 GAGACGGATGATTGTGGCTATC 58.679 50.000 0.00 0.00 0.00 2.08
2538 2794 4.083862 GGGGAGTGGTGCGGAGAC 62.084 72.222 0.00 0.00 0.00 3.36
2570 2836 2.046507 CAGAGAGCTTTGGCGGCT 60.047 61.111 11.43 0.00 44.37 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.