Multiple sequence alignment - TraesCS6A01G259400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G259400 chr6A 100.000 3071 0 0 1 3071 482088098 482085028 0.000000e+00 5672.0
1 TraesCS6A01G259400 chr6A 85.075 67 9 1 604 669 537600055 537599989 1.980000e-07 67.6
2 TraesCS6A01G259400 chr6B 95.675 2243 71 17 835 3071 516488319 516486097 0.000000e+00 3581.0
3 TraesCS6A01G259400 chr6B 93.407 364 22 2 14 375 718936430 718936793 3.480000e-149 538.0
4 TraesCS6A01G259400 chr6B 93.548 93 3 1 743 832 516490884 516490792 5.340000e-28 135.0
5 TraesCS6A01G259400 chr6B 100.000 33 0 0 714 746 516490940 516490908 9.190000e-06 62.1
6 TraesCS6A01G259400 chr6D 96.266 2169 65 8 909 3071 342028457 342026299 0.000000e+00 3542.0
7 TraesCS6A01G259400 chr6D 94.085 355 19 2 14 367 54558849 54559202 3.480000e-149 538.0
8 TraesCS6A01G259400 chr6D 87.919 149 7 5 743 881 342028602 342028455 6.810000e-37 165.0
9 TraesCS6A01G259400 chr6D 97.619 42 1 0 629 670 189734003 189734044 4.250000e-09 73.1
10 TraesCS6A01G259400 chr1D 95.014 361 17 1 14 373 334468559 334468919 1.600000e-157 566.0
11 TraesCS6A01G259400 chr1D 95.014 361 13 2 16 375 86109450 86109806 2.070000e-156 562.0
12 TraesCS6A01G259400 chr1D 88.333 60 6 1 611 669 420647418 420647359 1.530000e-08 71.3
13 TraesCS6A01G259400 chr2B 94.505 364 19 1 14 376 786906277 786906640 7.440000e-156 560.0
14 TraesCS6A01G259400 chr2B 94.490 363 19 1 14 375 786892953 786893315 2.670000e-155 558.0
15 TraesCS6A01G259400 chr2B 94.215 363 20 1 14 375 786886211 786886573 1.240000e-153 553.0
16 TraesCS6A01G259400 chr2B 94.215 363 20 1 14 375 786936804 786937166 1.240000e-153 553.0
17 TraesCS6A01G259400 chr2B 93.956 364 21 1 14 376 786950431 786950794 1.610000e-152 549.0
18 TraesCS6A01G259400 chr7D 88.136 59 6 1 612 669 505608250 505608192 5.490000e-08 69.4
19 TraesCS6A01G259400 chr3B 84.000 75 8 4 606 677 501130467 501130540 5.490000e-08 69.4
20 TraesCS6A01G259400 chr1B 92.000 50 2 2 629 677 249233132 249233084 5.490000e-08 69.4
21 TraesCS6A01G259400 chr7A 86.207 58 7 1 613 669 287010151 287010094 9.190000e-06 62.1
22 TraesCS6A01G259400 chr7A 85.000 60 7 2 609 666 619034924 619034983 3.310000e-05 60.2
23 TraesCS6A01G259400 chr2D 86.207 58 7 1 613 669 389694148 389694205 9.190000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G259400 chr6A 482085028 482088098 3070 True 5672.000000 5672 100.000000 1 3071 1 chr6A.!!$R1 3070
1 TraesCS6A01G259400 chr6B 516486097 516490940 4843 True 1259.366667 3581 96.407667 714 3071 3 chr6B.!!$R1 2357
2 TraesCS6A01G259400 chr6D 342026299 342028602 2303 True 1853.500000 3542 92.092500 743 3071 2 chr6D.!!$R1 2328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.032416 TCCCCCTAGTTTCCTCCTCG 60.032 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 4780 0.948623 ATTACGAGCTTGTGCGCACA 60.949 50.0 37.86 37.86 45.42 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.343758 ACGCGACATCAAGGCTGT 59.656 55.556 15.93 0.00 0.00 4.40
18 19 2.029288 ACGCGACATCAAGGCTGTG 61.029 57.895 15.93 0.00 0.00 3.66
19 20 2.743752 CGCGACATCAAGGCTGTGG 61.744 63.158 0.00 0.00 0.00 4.17
20 21 3.044059 GCGACATCAAGGCTGTGGC 62.044 63.158 0.00 0.00 40.33 5.01
21 22 1.672030 CGACATCAAGGCTGTGGCA 60.672 57.895 0.00 0.00 40.87 4.92
22 23 1.236616 CGACATCAAGGCTGTGGCAA 61.237 55.000 0.00 0.00 40.87 4.52
23 24 1.180029 GACATCAAGGCTGTGGCAAT 58.820 50.000 0.00 0.00 40.87 3.56
24 25 0.892755 ACATCAAGGCTGTGGCAATG 59.107 50.000 0.00 0.00 40.87 2.82
25 26 1.179152 CATCAAGGCTGTGGCAATGA 58.821 50.000 0.00 0.00 40.87 2.57
26 27 1.134367 CATCAAGGCTGTGGCAATGAG 59.866 52.381 0.00 0.00 37.76 2.90
27 28 0.609957 TCAAGGCTGTGGCAATGAGG 60.610 55.000 0.00 0.00 40.87 3.86
28 29 1.304713 AAGGCTGTGGCAATGAGGG 60.305 57.895 0.00 0.00 40.87 4.30
29 30 1.792757 AAGGCTGTGGCAATGAGGGA 61.793 55.000 0.00 0.00 40.87 4.20
30 31 1.076485 GGCTGTGGCAATGAGGGAT 60.076 57.895 0.00 0.00 40.87 3.85
31 32 1.389609 GGCTGTGGCAATGAGGGATG 61.390 60.000 0.00 0.00 40.87 3.51
32 33 1.389609 GCTGTGGCAATGAGGGATGG 61.390 60.000 0.00 0.00 38.54 3.51
33 34 0.033796 CTGTGGCAATGAGGGATGGT 60.034 55.000 0.00 0.00 0.00 3.55
34 35 0.034186 TGTGGCAATGAGGGATGGTC 60.034 55.000 0.00 0.00 0.00 4.02
35 36 0.257039 GTGGCAATGAGGGATGGTCT 59.743 55.000 0.00 0.00 0.00 3.85
36 37 1.490490 GTGGCAATGAGGGATGGTCTA 59.510 52.381 0.00 0.00 0.00 2.59
37 38 1.770658 TGGCAATGAGGGATGGTCTAG 59.229 52.381 0.00 0.00 0.00 2.43
38 39 1.544314 GGCAATGAGGGATGGTCTAGC 60.544 57.143 0.00 0.00 0.00 3.42
39 40 1.544314 GCAATGAGGGATGGTCTAGCC 60.544 57.143 0.00 0.00 37.90 3.93
40 41 2.053244 CAATGAGGGATGGTCTAGCCT 58.947 52.381 5.06 0.00 38.35 4.58
41 42 2.441001 CAATGAGGGATGGTCTAGCCTT 59.559 50.000 5.06 0.00 38.35 4.35
42 43 2.270434 TGAGGGATGGTCTAGCCTTT 57.730 50.000 5.06 0.00 38.35 3.11
43 44 1.839994 TGAGGGATGGTCTAGCCTTTG 59.160 52.381 5.06 0.00 38.35 2.77
44 45 0.548510 AGGGATGGTCTAGCCTTTGC 59.451 55.000 5.06 0.00 38.35 3.68
56 57 0.532115 GCCTTTGCTAACACCATGGG 59.468 55.000 18.09 7.72 33.53 4.00
57 58 1.185315 CCTTTGCTAACACCATGGGG 58.815 55.000 14.08 14.08 41.29 4.96
68 69 3.494850 CCATGGGGTTTCACGCTAT 57.505 52.632 2.85 0.00 32.70 2.97
69 70 1.762708 CCATGGGGTTTCACGCTATT 58.237 50.000 2.85 0.00 30.17 1.73
70 71 1.405105 CCATGGGGTTTCACGCTATTG 59.595 52.381 2.85 0.00 30.17 1.90
71 72 2.364632 CATGGGGTTTCACGCTATTGA 58.635 47.619 0.00 0.00 30.17 2.57
72 73 2.570415 TGGGGTTTCACGCTATTGAA 57.430 45.000 0.00 0.00 33.55 2.69
73 74 2.432444 TGGGGTTTCACGCTATTGAAG 58.568 47.619 0.00 0.00 36.84 3.02
86 87 5.028428 GCTATTGAAGCGGAATCAGATTC 57.972 43.478 14.09 14.09 42.53 2.52
87 88 4.754114 GCTATTGAAGCGGAATCAGATTCT 59.246 41.667 20.41 3.01 42.53 2.40
88 89 5.238214 GCTATTGAAGCGGAATCAGATTCTT 59.762 40.000 20.41 9.04 42.53 2.52
89 90 6.238593 GCTATTGAAGCGGAATCAGATTCTTT 60.239 38.462 20.41 13.23 42.53 2.52
90 91 4.952262 TGAAGCGGAATCAGATTCTTTG 57.048 40.909 20.41 12.70 39.24 2.77
91 92 3.691118 TGAAGCGGAATCAGATTCTTTGG 59.309 43.478 20.41 10.20 39.24 3.28
92 93 3.634397 AGCGGAATCAGATTCTTTGGA 57.366 42.857 20.41 0.00 39.24 3.53
93 94 3.539604 AGCGGAATCAGATTCTTTGGAG 58.460 45.455 20.41 8.35 39.24 3.86
94 95 2.615912 GCGGAATCAGATTCTTTGGAGG 59.384 50.000 20.41 5.35 39.24 4.30
95 96 3.878778 CGGAATCAGATTCTTTGGAGGT 58.121 45.455 20.41 0.00 39.24 3.85
96 97 4.683400 GCGGAATCAGATTCTTTGGAGGTA 60.683 45.833 20.41 0.00 39.24 3.08
97 98 5.428253 CGGAATCAGATTCTTTGGAGGTAA 58.572 41.667 20.41 0.00 39.24 2.85
98 99 6.058183 CGGAATCAGATTCTTTGGAGGTAAT 58.942 40.000 20.41 0.00 39.24 1.89
99 100 6.203723 CGGAATCAGATTCTTTGGAGGTAATC 59.796 42.308 20.41 1.20 39.24 1.75
100 101 7.056635 GGAATCAGATTCTTTGGAGGTAATCA 58.943 38.462 20.41 0.00 39.24 2.57
101 102 7.557719 GGAATCAGATTCTTTGGAGGTAATCAA 59.442 37.037 20.41 0.00 39.24 2.57
102 103 9.129532 GAATCAGATTCTTTGGAGGTAATCAAT 57.870 33.333 15.03 0.00 36.37 2.57
103 104 9.484806 AATCAGATTCTTTGGAGGTAATCAATT 57.515 29.630 0.00 0.00 32.04 2.32
104 105 8.884124 TCAGATTCTTTGGAGGTAATCAATTT 57.116 30.769 0.00 0.00 32.04 1.82
105 106 9.312904 TCAGATTCTTTGGAGGTAATCAATTTT 57.687 29.630 0.00 0.00 32.04 1.82
106 107 9.933723 CAGATTCTTTGGAGGTAATCAATTTTT 57.066 29.630 0.00 0.00 32.04 1.94
107 108 9.933723 AGATTCTTTGGAGGTAATCAATTTTTG 57.066 29.630 0.00 0.00 32.04 2.44
108 109 7.961325 TTCTTTGGAGGTAATCAATTTTTGC 57.039 32.000 0.00 0.00 0.00 3.68
109 110 7.060383 TCTTTGGAGGTAATCAATTTTTGCA 57.940 32.000 0.00 0.00 0.00 4.08
110 111 7.678837 TCTTTGGAGGTAATCAATTTTTGCAT 58.321 30.769 0.00 0.00 0.00 3.96
111 112 8.156165 TCTTTGGAGGTAATCAATTTTTGCATT 58.844 29.630 0.00 0.00 0.00 3.56
112 113 7.670009 TTGGAGGTAATCAATTTTTGCATTG 57.330 32.000 0.00 0.00 35.73 2.82
113 114 6.171921 TGGAGGTAATCAATTTTTGCATTGG 58.828 36.000 0.00 0.00 35.22 3.16
114 115 6.013898 TGGAGGTAATCAATTTTTGCATTGGA 60.014 34.615 0.00 0.00 35.22 3.53
115 116 6.313658 GGAGGTAATCAATTTTTGCATTGGAC 59.686 38.462 0.00 0.00 35.22 4.02
116 117 6.767456 AGGTAATCAATTTTTGCATTGGACA 58.233 32.000 0.00 0.00 35.22 4.02
117 118 7.396418 AGGTAATCAATTTTTGCATTGGACAT 58.604 30.769 0.00 0.00 35.22 3.06
118 119 7.334921 AGGTAATCAATTTTTGCATTGGACATG 59.665 33.333 0.00 0.00 35.22 3.21
119 120 7.333921 GGTAATCAATTTTTGCATTGGACATGA 59.666 33.333 0.00 0.00 35.22 3.07
120 121 7.931578 AATCAATTTTTGCATTGGACATGAT 57.068 28.000 0.00 0.00 35.22 2.45
121 122 6.971527 TCAATTTTTGCATTGGACATGATC 57.028 33.333 0.00 0.00 35.22 2.92
122 123 6.465084 TCAATTTTTGCATTGGACATGATCA 58.535 32.000 0.00 0.00 35.22 2.92
123 124 7.106890 TCAATTTTTGCATTGGACATGATCAT 58.893 30.769 1.18 1.18 35.22 2.45
124 125 7.608376 TCAATTTTTGCATTGGACATGATCATT 59.392 29.630 5.16 0.00 35.22 2.57
125 126 6.729391 TTTTTGCATTGGACATGATCATTG 57.271 33.333 5.16 1.78 0.00 2.82
126 127 4.394439 TTGCATTGGACATGATCATTGG 57.606 40.909 5.16 0.00 0.00 3.16
127 128 3.367321 TGCATTGGACATGATCATTGGT 58.633 40.909 5.16 1.41 0.00 3.67
128 129 3.131400 TGCATTGGACATGATCATTGGTG 59.869 43.478 5.16 0.00 0.00 4.17
129 130 3.491964 GCATTGGACATGATCATTGGTGG 60.492 47.826 5.16 0.00 0.00 4.61
130 131 2.440517 TGGACATGATCATTGGTGGG 57.559 50.000 5.16 0.00 0.00 4.61
131 132 1.921748 TGGACATGATCATTGGTGGGA 59.078 47.619 5.16 0.00 0.00 4.37
132 133 2.515005 TGGACATGATCATTGGTGGGAT 59.485 45.455 5.16 0.00 0.00 3.85
133 134 2.889045 GGACATGATCATTGGTGGGATG 59.111 50.000 5.16 0.00 0.00 3.51
134 135 2.295349 GACATGATCATTGGTGGGATGC 59.705 50.000 5.16 0.00 0.00 3.91
135 136 2.091499 ACATGATCATTGGTGGGATGCT 60.091 45.455 5.16 0.00 0.00 3.79
136 137 2.061509 TGATCATTGGTGGGATGCTG 57.938 50.000 0.00 0.00 0.00 4.41
137 138 0.672342 GATCATTGGTGGGATGCTGC 59.328 55.000 0.00 0.00 0.00 5.25
138 139 0.032912 ATCATTGGTGGGATGCTGCA 60.033 50.000 4.13 4.13 0.00 4.41
139 140 0.251698 TCATTGGTGGGATGCTGCAA 60.252 50.000 6.36 0.00 0.00 4.08
140 141 0.108520 CATTGGTGGGATGCTGCAAC 60.109 55.000 6.36 3.28 0.00 4.17
141 142 0.542467 ATTGGTGGGATGCTGCAACA 60.542 50.000 6.36 3.51 0.00 3.33
142 143 0.758310 TTGGTGGGATGCTGCAACAA 60.758 50.000 6.36 3.02 0.00 2.83
143 144 1.290009 GGTGGGATGCTGCAACAAC 59.710 57.895 6.36 6.55 0.00 3.32
144 145 1.462731 GGTGGGATGCTGCAACAACA 61.463 55.000 6.36 4.38 0.00 3.33
145 146 0.388659 GTGGGATGCTGCAACAACAA 59.611 50.000 6.36 0.00 0.00 2.83
146 147 1.001181 GTGGGATGCTGCAACAACAAT 59.999 47.619 6.36 0.00 0.00 2.71
147 148 2.230992 GTGGGATGCTGCAACAACAATA 59.769 45.455 6.36 0.00 0.00 1.90
148 149 3.098377 TGGGATGCTGCAACAACAATAT 58.902 40.909 6.36 0.00 0.00 1.28
149 150 4.097741 GTGGGATGCTGCAACAACAATATA 59.902 41.667 6.36 0.00 0.00 0.86
150 151 4.894705 TGGGATGCTGCAACAACAATATAT 59.105 37.500 6.36 0.00 0.00 0.86
151 152 5.221283 TGGGATGCTGCAACAACAATATATG 60.221 40.000 6.36 0.00 0.00 1.78
152 153 4.682860 GGATGCTGCAACAACAATATATGC 59.317 41.667 6.36 0.00 37.52 3.14
153 154 3.693654 TGCTGCAACAACAATATATGCG 58.306 40.909 0.00 0.00 39.81 4.73
154 155 3.044986 GCTGCAACAACAATATATGCGG 58.955 45.455 0.00 0.00 44.28 5.69
155 156 3.243035 GCTGCAACAACAATATATGCGGA 60.243 43.478 8.92 0.00 44.22 5.54
156 157 4.733230 GCTGCAACAACAATATATGCGGAA 60.733 41.667 8.92 0.00 44.22 4.30
157 158 5.316327 TGCAACAACAATATATGCGGAAA 57.684 34.783 0.00 0.00 39.81 3.13
158 159 5.900425 TGCAACAACAATATATGCGGAAAT 58.100 33.333 0.00 0.00 39.81 2.17
159 160 5.976534 TGCAACAACAATATATGCGGAAATC 59.023 36.000 0.00 0.00 39.81 2.17
160 161 6.183360 TGCAACAACAATATATGCGGAAATCT 60.183 34.615 0.00 0.00 39.81 2.40
161 162 6.697019 GCAACAACAATATATGCGGAAATCTT 59.303 34.615 0.00 0.00 0.00 2.40
162 163 7.306167 GCAACAACAATATATGCGGAAATCTTG 60.306 37.037 0.00 0.00 0.00 3.02
163 164 7.566760 ACAACAATATATGCGGAAATCTTGA 57.433 32.000 0.00 0.00 0.00 3.02
164 165 7.995289 ACAACAATATATGCGGAAATCTTGAA 58.005 30.769 0.00 0.00 0.00 2.69
165 166 7.915397 ACAACAATATATGCGGAAATCTTGAAC 59.085 33.333 0.00 0.00 0.00 3.18
166 167 7.807977 ACAATATATGCGGAAATCTTGAACT 57.192 32.000 0.00 0.00 0.00 3.01
167 168 8.225603 ACAATATATGCGGAAATCTTGAACTT 57.774 30.769 0.00 0.00 0.00 2.66
168 169 8.131100 ACAATATATGCGGAAATCTTGAACTTG 58.869 33.333 0.00 0.00 0.00 3.16
169 170 3.855689 ATGCGGAAATCTTGAACTTGG 57.144 42.857 0.00 0.00 0.00 3.61
170 171 1.269448 TGCGGAAATCTTGAACTTGGC 59.731 47.619 0.00 0.00 0.00 4.52
171 172 1.541588 GCGGAAATCTTGAACTTGGCT 59.458 47.619 0.00 0.00 0.00 4.75
172 173 2.747446 GCGGAAATCTTGAACTTGGCTA 59.253 45.455 0.00 0.00 0.00 3.93
173 174 3.426292 GCGGAAATCTTGAACTTGGCTAC 60.426 47.826 0.00 0.00 0.00 3.58
174 175 3.181520 CGGAAATCTTGAACTTGGCTACG 60.182 47.826 0.00 0.00 0.00 3.51
175 176 3.127030 GGAAATCTTGAACTTGGCTACGG 59.873 47.826 0.00 0.00 0.00 4.02
176 177 3.695830 AATCTTGAACTTGGCTACGGA 57.304 42.857 0.00 0.00 0.00 4.69
177 178 3.914426 ATCTTGAACTTGGCTACGGAT 57.086 42.857 0.00 0.00 0.00 4.18
178 179 2.972625 TCTTGAACTTGGCTACGGATG 58.027 47.619 0.00 0.00 0.00 3.51
179 180 2.301870 TCTTGAACTTGGCTACGGATGT 59.698 45.455 0.00 0.00 0.00 3.06
180 181 3.512329 TCTTGAACTTGGCTACGGATGTA 59.488 43.478 0.00 0.00 0.00 2.29
182 183 2.167693 TGAACTTGGCTACGGATGTAGG 59.832 50.000 4.76 0.00 46.72 3.18
183 184 1.120530 ACTTGGCTACGGATGTAGGG 58.879 55.000 4.76 0.00 46.72 3.53
184 185 1.342674 ACTTGGCTACGGATGTAGGGA 60.343 52.381 4.76 0.00 46.72 4.20
185 186 1.760613 CTTGGCTACGGATGTAGGGAA 59.239 52.381 4.76 0.00 46.72 3.97
186 187 1.410004 TGGCTACGGATGTAGGGAAG 58.590 55.000 4.76 0.00 46.72 3.46
187 188 0.680061 GGCTACGGATGTAGGGAAGG 59.320 60.000 4.76 0.00 46.72 3.46
188 189 1.411041 GCTACGGATGTAGGGAAGGT 58.589 55.000 4.76 0.00 46.72 3.50
189 190 1.340568 GCTACGGATGTAGGGAAGGTC 59.659 57.143 4.76 0.00 46.72 3.85
190 191 2.662866 CTACGGATGTAGGGAAGGTCA 58.337 52.381 0.00 0.00 43.62 4.02
191 192 1.946984 ACGGATGTAGGGAAGGTCAA 58.053 50.000 0.00 0.00 0.00 3.18
192 193 2.478292 ACGGATGTAGGGAAGGTCAAT 58.522 47.619 0.00 0.00 0.00 2.57
193 194 2.844348 ACGGATGTAGGGAAGGTCAATT 59.156 45.455 0.00 0.00 0.00 2.32
194 195 3.265995 ACGGATGTAGGGAAGGTCAATTT 59.734 43.478 0.00 0.00 0.00 1.82
195 196 4.263771 ACGGATGTAGGGAAGGTCAATTTT 60.264 41.667 0.00 0.00 0.00 1.82
196 197 5.045432 ACGGATGTAGGGAAGGTCAATTTTA 60.045 40.000 0.00 0.00 0.00 1.52
197 198 6.062095 CGGATGTAGGGAAGGTCAATTTTAT 58.938 40.000 0.00 0.00 0.00 1.40
198 199 6.017109 CGGATGTAGGGAAGGTCAATTTTATG 60.017 42.308 0.00 0.00 0.00 1.90
199 200 6.239036 GGATGTAGGGAAGGTCAATTTTATGC 60.239 42.308 0.00 0.00 0.00 3.14
200 201 5.575157 TGTAGGGAAGGTCAATTTTATGCA 58.425 37.500 0.00 0.00 0.00 3.96
201 202 5.417580 TGTAGGGAAGGTCAATTTTATGCAC 59.582 40.000 0.00 0.00 0.00 4.57
202 203 4.677182 AGGGAAGGTCAATTTTATGCACT 58.323 39.130 0.00 0.00 0.00 4.40
203 204 4.463891 AGGGAAGGTCAATTTTATGCACTG 59.536 41.667 0.00 0.00 0.00 3.66
204 205 4.220602 GGGAAGGTCAATTTTATGCACTGT 59.779 41.667 0.00 0.00 0.00 3.55
205 206 5.279456 GGGAAGGTCAATTTTATGCACTGTT 60.279 40.000 0.00 0.00 0.00 3.16
206 207 6.223120 GGAAGGTCAATTTTATGCACTGTTT 58.777 36.000 0.00 0.00 0.00 2.83
207 208 6.705825 GGAAGGTCAATTTTATGCACTGTTTT 59.294 34.615 0.00 0.00 0.00 2.43
208 209 7.870445 GGAAGGTCAATTTTATGCACTGTTTTA 59.130 33.333 0.00 0.00 0.00 1.52
209 210 8.816640 AAGGTCAATTTTATGCACTGTTTTAG 57.183 30.769 0.00 0.00 0.00 1.85
210 211 8.177119 AGGTCAATTTTATGCACTGTTTTAGA 57.823 30.769 0.00 0.00 0.00 2.10
211 212 8.299570 AGGTCAATTTTATGCACTGTTTTAGAG 58.700 33.333 0.00 0.00 0.00 2.43
212 213 8.296713 GGTCAATTTTATGCACTGTTTTAGAGA 58.703 33.333 0.00 0.00 0.00 3.10
213 214 9.334693 GTCAATTTTATGCACTGTTTTAGAGAG 57.665 33.333 0.00 0.00 0.00 3.20
214 215 8.514594 TCAATTTTATGCACTGTTTTAGAGAGG 58.485 33.333 0.00 0.00 0.00 3.69
215 216 5.880054 TTTATGCACTGTTTTAGAGAGGC 57.120 39.130 0.00 0.00 0.00 4.70
216 217 3.710209 ATGCACTGTTTTAGAGAGGCT 57.290 42.857 0.00 0.00 0.00 4.58
217 218 4.826274 ATGCACTGTTTTAGAGAGGCTA 57.174 40.909 0.00 0.00 0.00 3.93
218 219 4.617253 TGCACTGTTTTAGAGAGGCTAA 57.383 40.909 0.00 0.00 37.30 3.09
219 220 5.165961 TGCACTGTTTTAGAGAGGCTAAT 57.834 39.130 0.00 0.00 38.79 1.73
220 221 6.294361 TGCACTGTTTTAGAGAGGCTAATA 57.706 37.500 0.00 0.00 38.79 0.98
221 222 6.341316 TGCACTGTTTTAGAGAGGCTAATAG 58.659 40.000 0.00 0.00 38.79 1.73
222 223 6.070767 TGCACTGTTTTAGAGAGGCTAATAGT 60.071 38.462 0.00 0.00 38.79 2.12
223 224 6.256757 GCACTGTTTTAGAGAGGCTAATAGTG 59.743 42.308 14.38 14.38 41.98 2.74
224 225 7.324178 CACTGTTTTAGAGAGGCTAATAGTGT 58.676 38.462 11.81 0.00 38.86 3.55
225 226 7.819900 CACTGTTTTAGAGAGGCTAATAGTGTT 59.180 37.037 11.81 0.00 38.86 3.32
226 227 7.819900 ACTGTTTTAGAGAGGCTAATAGTGTTG 59.180 37.037 0.00 0.00 38.79 3.33
227 228 6.594159 TGTTTTAGAGAGGCTAATAGTGTTGC 59.406 38.462 0.00 0.00 38.79 4.17
228 229 6.546428 TTTAGAGAGGCTAATAGTGTTGCT 57.454 37.500 0.00 0.00 38.79 3.91
229 230 4.664150 AGAGAGGCTAATAGTGTTGCTC 57.336 45.455 0.00 0.00 0.00 4.26
230 231 4.026744 AGAGAGGCTAATAGTGTTGCTCA 58.973 43.478 0.00 0.00 0.00 4.26
231 232 4.653341 AGAGAGGCTAATAGTGTTGCTCAT 59.347 41.667 0.00 0.00 0.00 2.90
232 233 4.701765 AGAGGCTAATAGTGTTGCTCATG 58.298 43.478 0.00 0.00 0.00 3.07
233 234 4.406972 AGAGGCTAATAGTGTTGCTCATGA 59.593 41.667 0.00 0.00 0.00 3.07
234 235 4.701765 AGGCTAATAGTGTTGCTCATGAG 58.298 43.478 18.84 18.84 0.00 2.90
282 283 9.990868 AATAAAGTTTCTAGTATTTGGGATGGT 57.009 29.630 0.00 0.00 0.00 3.55
283 284 7.703058 AAAGTTTCTAGTATTTGGGATGGTG 57.297 36.000 0.00 0.00 0.00 4.17
284 285 6.636454 AGTTTCTAGTATTTGGGATGGTGA 57.364 37.500 0.00 0.00 0.00 4.02
285 286 7.213178 AGTTTCTAGTATTTGGGATGGTGAT 57.787 36.000 0.00 0.00 0.00 3.06
286 287 7.283329 AGTTTCTAGTATTTGGGATGGTGATC 58.717 38.462 0.00 0.00 0.00 2.92
287 288 5.825593 TCTAGTATTTGGGATGGTGATCC 57.174 43.478 0.00 0.00 46.99 3.36
294 295 3.579496 GGATGGTGATCCCCCTAGT 57.421 57.895 0.00 0.00 42.42 2.57
295 296 1.821088 GGATGGTGATCCCCCTAGTT 58.179 55.000 0.00 0.00 42.42 2.24
296 297 2.136026 GGATGGTGATCCCCCTAGTTT 58.864 52.381 0.00 0.00 42.42 2.66
297 298 2.106684 GGATGGTGATCCCCCTAGTTTC 59.893 54.545 0.00 0.00 42.42 2.78
298 299 1.591768 TGGTGATCCCCCTAGTTTCC 58.408 55.000 0.00 0.00 0.00 3.13
299 300 1.082194 TGGTGATCCCCCTAGTTTCCT 59.918 52.381 0.00 0.00 0.00 3.36
300 301 1.769465 GGTGATCCCCCTAGTTTCCTC 59.231 57.143 0.00 0.00 0.00 3.71
301 302 1.769465 GTGATCCCCCTAGTTTCCTCC 59.231 57.143 0.00 0.00 0.00 4.30
302 303 1.657162 TGATCCCCCTAGTTTCCTCCT 59.343 52.381 0.00 0.00 0.00 3.69
303 304 2.331166 GATCCCCCTAGTTTCCTCCTC 58.669 57.143 0.00 0.00 0.00 3.71
304 305 0.032416 TCCCCCTAGTTTCCTCCTCG 60.032 60.000 0.00 0.00 0.00 4.63
305 306 1.049289 CCCCCTAGTTTCCTCCTCGG 61.049 65.000 0.00 0.00 0.00 4.63
306 307 0.325390 CCCCTAGTTTCCTCCTCGGT 60.325 60.000 0.00 0.00 0.00 4.69
307 308 1.063417 CCCCTAGTTTCCTCCTCGGTA 60.063 57.143 0.00 0.00 0.00 4.02
308 309 2.625087 CCCCTAGTTTCCTCCTCGGTAA 60.625 54.545 0.00 0.00 0.00 2.85
309 310 3.102204 CCCTAGTTTCCTCCTCGGTAAA 58.898 50.000 0.00 0.00 0.00 2.01
310 311 3.118847 CCCTAGTTTCCTCCTCGGTAAAC 60.119 52.174 0.00 0.00 35.15 2.01
311 312 3.768215 CCTAGTTTCCTCCTCGGTAAACT 59.232 47.826 13.84 13.84 41.60 2.66
312 313 4.952335 CCTAGTTTCCTCCTCGGTAAACTA 59.048 45.833 14.32 14.32 40.45 2.24
313 314 5.067544 CCTAGTTTCCTCCTCGGTAAACTAG 59.932 48.000 23.25 23.25 46.63 2.57
314 315 3.195182 AGTTTCCTCCTCGGTAAACTAGC 59.805 47.826 0.00 0.00 39.34 3.42
315 316 2.822707 TCCTCCTCGGTAAACTAGCT 57.177 50.000 0.00 0.00 0.00 3.32
316 317 2.376109 TCCTCCTCGGTAAACTAGCTG 58.624 52.381 0.00 0.00 0.00 4.24
317 318 2.025605 TCCTCCTCGGTAAACTAGCTGA 60.026 50.000 0.00 0.00 0.00 4.26
318 319 2.959707 CCTCCTCGGTAAACTAGCTGAT 59.040 50.000 0.00 0.00 0.00 2.90
319 320 3.243569 CCTCCTCGGTAAACTAGCTGATG 60.244 52.174 0.00 0.00 0.00 3.07
320 321 3.628008 TCCTCGGTAAACTAGCTGATGA 58.372 45.455 0.00 0.00 0.00 2.92
321 322 4.215908 TCCTCGGTAAACTAGCTGATGAT 58.784 43.478 0.00 0.00 0.00 2.45
322 323 4.038042 TCCTCGGTAAACTAGCTGATGATG 59.962 45.833 0.00 0.00 0.00 3.07
323 324 4.202161 CCTCGGTAAACTAGCTGATGATGT 60.202 45.833 0.00 0.00 0.00 3.06
324 325 5.009710 CCTCGGTAAACTAGCTGATGATGTA 59.990 44.000 0.00 0.00 0.00 2.29
325 326 6.459670 TCGGTAAACTAGCTGATGATGTAA 57.540 37.500 0.00 0.00 0.00 2.41
326 327 6.869695 TCGGTAAACTAGCTGATGATGTAAA 58.130 36.000 0.00 0.00 0.00 2.01
327 328 6.755141 TCGGTAAACTAGCTGATGATGTAAAC 59.245 38.462 0.00 0.00 0.00 2.01
328 329 6.533723 CGGTAAACTAGCTGATGATGTAAACA 59.466 38.462 0.00 0.00 0.00 2.83
329 330 7.224753 CGGTAAACTAGCTGATGATGTAAACAT 59.775 37.037 0.00 0.00 39.70 2.71
330 331 8.893727 GGTAAACTAGCTGATGATGTAAACATT 58.106 33.333 0.00 0.00 36.57 2.71
333 334 9.630098 AAACTAGCTGATGATGTAAACATTTTG 57.370 29.630 0.00 0.00 36.57 2.44
334 335 8.340618 ACTAGCTGATGATGTAAACATTTTGT 57.659 30.769 0.00 0.00 36.57 2.83
335 336 8.796475 ACTAGCTGATGATGTAAACATTTTGTT 58.204 29.630 0.00 0.00 43.41 2.83
336 337 7.878477 AGCTGATGATGTAAACATTTTGTTG 57.122 32.000 0.00 0.00 40.14 3.33
337 338 7.660112 AGCTGATGATGTAAACATTTTGTTGA 58.340 30.769 0.00 0.00 40.14 3.18
338 339 7.811236 AGCTGATGATGTAAACATTTTGTTGAG 59.189 33.333 0.00 0.00 40.14 3.02
339 340 7.596248 GCTGATGATGTAAACATTTTGTTGAGT 59.404 33.333 0.00 0.00 40.14 3.41
340 341 9.467258 CTGATGATGTAAACATTTTGTTGAGTT 57.533 29.630 0.00 0.00 40.14 3.01
357 358 9.719355 TTGTTGAGTTAATAAAGCTAGTCATGA 57.281 29.630 0.00 0.00 0.00 3.07
358 359 9.890629 TGTTGAGTTAATAAAGCTAGTCATGAT 57.109 29.630 0.00 0.00 0.00 2.45
360 361 8.893219 TGAGTTAATAAAGCTAGTCATGATGG 57.107 34.615 0.00 0.00 0.00 3.51
361 362 7.442364 TGAGTTAATAAAGCTAGTCATGATGGC 59.558 37.037 0.00 4.04 0.00 4.40
362 363 6.712547 AGTTAATAAAGCTAGTCATGATGGCC 59.287 38.462 0.00 0.00 0.00 5.36
363 364 1.959042 AAAGCTAGTCATGATGGCCG 58.041 50.000 0.00 0.00 0.00 6.13
364 365 0.833287 AAGCTAGTCATGATGGCCGT 59.167 50.000 0.00 0.00 0.00 5.68
365 366 0.833287 AGCTAGTCATGATGGCCGTT 59.167 50.000 0.00 0.00 0.00 4.44
366 367 1.202580 AGCTAGTCATGATGGCCGTTC 60.203 52.381 0.00 0.00 0.00 3.95
367 368 1.202580 GCTAGTCATGATGGCCGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
368 369 2.035961 GCTAGTCATGATGGCCGTTCTA 59.964 50.000 0.00 0.00 0.00 2.10
369 370 3.492656 GCTAGTCATGATGGCCGTTCTAA 60.493 47.826 0.00 0.00 0.00 2.10
370 371 3.627395 AGTCATGATGGCCGTTCTAAA 57.373 42.857 0.00 0.00 0.00 1.85
371 372 3.950397 AGTCATGATGGCCGTTCTAAAA 58.050 40.909 0.00 0.00 0.00 1.52
372 373 4.331968 AGTCATGATGGCCGTTCTAAAAA 58.668 39.130 0.00 0.00 0.00 1.94
416 417 8.594881 ACAGTCTTGTTAAAACACTCTAGATG 57.405 34.615 0.00 0.00 38.92 2.90
417 418 7.171678 ACAGTCTTGTTAAAACACTCTAGATGC 59.828 37.037 0.00 0.00 38.92 3.91
418 419 6.366332 AGTCTTGTTAAAACACTCTAGATGCG 59.634 38.462 0.00 0.00 38.92 4.73
419 420 6.145696 GTCTTGTTAAAACACTCTAGATGCGT 59.854 38.462 0.00 0.00 38.92 5.24
420 421 6.704493 TCTTGTTAAAACACTCTAGATGCGTT 59.296 34.615 0.00 0.00 38.92 4.84
421 422 6.462073 TGTTAAAACACTCTAGATGCGTTC 57.538 37.500 0.00 0.00 33.17 3.95
422 423 6.220930 TGTTAAAACACTCTAGATGCGTTCT 58.779 36.000 0.00 0.00 34.58 3.01
423 424 7.372714 TGTTAAAACACTCTAGATGCGTTCTA 58.627 34.615 0.00 0.00 33.11 2.10
424 425 7.868922 TGTTAAAACACTCTAGATGCGTTCTAA 59.131 33.333 0.00 0.00 33.62 2.10
425 426 6.952935 AAAACACTCTAGATGCGTTCTAAG 57.047 37.500 0.00 2.61 36.50 2.18
426 427 5.646577 AACACTCTAGATGCGTTCTAAGT 57.353 39.130 0.00 3.08 36.50 2.24
427 428 6.754702 AACACTCTAGATGCGTTCTAAGTA 57.245 37.500 0.00 0.00 36.50 2.24
428 429 6.945938 ACACTCTAGATGCGTTCTAAGTAT 57.054 37.500 0.00 0.00 36.50 2.12
429 430 6.730175 ACACTCTAGATGCGTTCTAAGTATG 58.270 40.000 0.00 0.00 36.50 2.39
430 431 5.627367 CACTCTAGATGCGTTCTAAGTATGC 59.373 44.000 0.00 0.00 36.50 3.14
431 432 5.122512 TCTAGATGCGTTCTAAGTATGCC 57.877 43.478 0.00 0.00 36.50 4.40
432 433 3.819564 AGATGCGTTCTAAGTATGCCA 57.180 42.857 0.00 0.00 30.96 4.92
433 434 4.342862 AGATGCGTTCTAAGTATGCCAT 57.657 40.909 0.00 0.00 30.96 4.40
434 435 5.468540 AGATGCGTTCTAAGTATGCCATA 57.531 39.130 0.00 0.00 30.96 2.74
435 436 6.042638 AGATGCGTTCTAAGTATGCCATAT 57.957 37.500 0.00 0.00 30.96 1.78
436 437 6.102663 AGATGCGTTCTAAGTATGCCATATC 58.897 40.000 0.00 0.00 30.96 1.63
437 438 5.468540 TGCGTTCTAAGTATGCCATATCT 57.531 39.130 0.00 0.00 0.00 1.98
438 439 6.584185 TGCGTTCTAAGTATGCCATATCTA 57.416 37.500 0.00 0.00 0.00 1.98
439 440 6.621613 TGCGTTCTAAGTATGCCATATCTAG 58.378 40.000 0.00 0.00 0.00 2.43
440 441 6.433093 TGCGTTCTAAGTATGCCATATCTAGA 59.567 38.462 0.00 0.00 0.00 2.43
441 442 7.122799 TGCGTTCTAAGTATGCCATATCTAGAT 59.877 37.037 10.73 10.73 0.00 1.98
442 443 7.976734 GCGTTCTAAGTATGCCATATCTAGATT 59.023 37.037 11.25 0.00 0.00 2.40
443 444 9.509855 CGTTCTAAGTATGCCATATCTAGATTC 57.490 37.037 11.25 0.00 0.00 2.52
454 455 8.678199 TGCCATATCTAGATTCTACTATGTTCG 58.322 37.037 11.25 0.00 0.00 3.95
455 456 8.679100 GCCATATCTAGATTCTACTATGTTCGT 58.321 37.037 11.25 0.00 0.00 3.85
471 472 9.826574 ACTATGTTCGTTAATTTTATGCTAGGA 57.173 29.630 0.00 0.00 0.00 2.94
475 476 9.168451 TGTTCGTTAATTTTATGCTAGGATTCA 57.832 29.630 0.65 0.00 0.00 2.57
478 479 8.289618 TCGTTAATTTTATGCTAGGATTCATGC 58.710 33.333 0.65 0.00 0.00 4.06
479 480 8.075574 CGTTAATTTTATGCTAGGATTCATGCA 58.924 33.333 0.65 0.00 39.83 3.96
480 481 9.748708 GTTAATTTTATGCTAGGATTCATGCAA 57.251 29.630 0.65 0.00 38.96 4.08
481 482 9.970395 TTAATTTTATGCTAGGATTCATGCAAG 57.030 29.630 0.65 0.00 38.96 4.01
482 483 7.592885 ATTTTATGCTAGGATTCATGCAAGT 57.407 32.000 0.65 0.00 38.96 3.16
483 484 8.696043 ATTTTATGCTAGGATTCATGCAAGTA 57.304 30.769 0.65 0.00 38.96 2.24
484 485 8.518430 TTTTATGCTAGGATTCATGCAAGTAA 57.482 30.769 0.65 0.00 38.96 2.24
485 486 8.696043 TTTATGCTAGGATTCATGCAAGTAAT 57.304 30.769 0.65 0.00 38.96 1.89
486 487 8.696043 TTATGCTAGGATTCATGCAAGTAATT 57.304 30.769 0.65 0.00 38.96 1.40
487 488 7.592885 ATGCTAGGATTCATGCAAGTAATTT 57.407 32.000 0.00 0.00 38.96 1.82
488 489 7.031226 TGCTAGGATTCATGCAAGTAATTTC 57.969 36.000 0.00 0.00 32.12 2.17
489 490 6.830324 TGCTAGGATTCATGCAAGTAATTTCT 59.170 34.615 0.00 0.00 32.12 2.52
490 491 7.340232 TGCTAGGATTCATGCAAGTAATTTCTT 59.660 33.333 0.00 0.00 32.12 2.52
491 492 8.193438 GCTAGGATTCATGCAAGTAATTTCTTT 58.807 33.333 0.00 0.00 0.00 2.52
517 518 9.816354 TTTTTCCCTTTCTTCAGTTTAATTGAG 57.184 29.630 0.00 0.00 0.00 3.02
518 519 8.533569 TTTCCCTTTCTTCAGTTTAATTGAGT 57.466 30.769 0.00 0.00 0.00 3.41
519 520 8.533569 TTCCCTTTCTTCAGTTTAATTGAGTT 57.466 30.769 0.00 0.00 0.00 3.01
520 521 9.635404 TTCCCTTTCTTCAGTTTAATTGAGTTA 57.365 29.630 0.00 0.00 0.00 2.24
521 522 9.063615 TCCCTTTCTTCAGTTTAATTGAGTTAC 57.936 33.333 0.00 0.00 0.00 2.50
522 523 9.067986 CCCTTTCTTCAGTTTAATTGAGTTACT 57.932 33.333 0.00 0.00 0.00 2.24
597 598 7.745620 ATTTGTTCTGTTTCCTTAGAATCGT 57.254 32.000 0.00 0.00 35.58 3.73
598 599 8.842358 ATTTGTTCTGTTTCCTTAGAATCGTA 57.158 30.769 0.00 0.00 35.58 3.43
599 600 7.647907 TTGTTCTGTTTCCTTAGAATCGTAC 57.352 36.000 0.00 0.00 35.58 3.67
600 601 5.860182 TGTTCTGTTTCCTTAGAATCGTACG 59.140 40.000 9.53 9.53 35.58 3.67
601 602 5.633830 TCTGTTTCCTTAGAATCGTACGT 57.366 39.130 16.05 0.00 0.00 3.57
602 603 6.741992 TCTGTTTCCTTAGAATCGTACGTA 57.258 37.500 16.05 2.34 0.00 3.57
603 604 7.144722 TCTGTTTCCTTAGAATCGTACGTAA 57.855 36.000 16.05 5.56 0.00 3.18
604 605 7.023575 TCTGTTTCCTTAGAATCGTACGTAAC 58.976 38.462 16.05 7.60 0.00 2.50
605 606 6.913170 TGTTTCCTTAGAATCGTACGTAACT 58.087 36.000 16.05 14.13 0.00 2.24
606 607 8.039603 TGTTTCCTTAGAATCGTACGTAACTA 57.960 34.615 16.05 13.20 0.00 2.24
607 608 7.962918 TGTTTCCTTAGAATCGTACGTAACTAC 59.037 37.037 16.05 7.26 0.00 2.73
625 626 9.546909 CGTAACTACGTATATATTTCATCCGTT 57.453 33.333 0.00 0.00 44.13 4.44
640 641 9.981114 ATTTCATCCGTTTTAAATTCTTGTCTT 57.019 25.926 0.00 0.00 0.00 3.01
678 679 9.971922 AATATAAATGTATCAAGCAAGCTTTCC 57.028 29.630 4.24 0.00 33.42 3.13
679 680 4.725790 AATGTATCAAGCAAGCTTTCCC 57.274 40.909 4.24 0.00 33.42 3.97
680 681 2.446435 TGTATCAAGCAAGCTTTCCCC 58.554 47.619 4.24 0.00 33.42 4.81
681 682 2.224992 TGTATCAAGCAAGCTTTCCCCA 60.225 45.455 4.24 0.00 33.42 4.96
682 683 1.260544 ATCAAGCAAGCTTTCCCCAC 58.739 50.000 4.24 0.00 33.42 4.61
683 684 1.172180 TCAAGCAAGCTTTCCCCACG 61.172 55.000 4.24 0.00 33.42 4.94
684 685 1.150536 AAGCAAGCTTTCCCCACGA 59.849 52.632 0.00 0.00 31.29 4.35
685 686 1.172812 AAGCAAGCTTTCCCCACGAC 61.173 55.000 0.00 0.00 31.29 4.34
686 687 1.600916 GCAAGCTTTCCCCACGACT 60.601 57.895 0.00 0.00 0.00 4.18
687 688 0.321298 GCAAGCTTTCCCCACGACTA 60.321 55.000 0.00 0.00 0.00 2.59
688 689 1.726853 CAAGCTTTCCCCACGACTAG 58.273 55.000 0.00 0.00 0.00 2.57
689 690 1.275291 CAAGCTTTCCCCACGACTAGA 59.725 52.381 0.00 0.00 0.00 2.43
690 691 1.187087 AGCTTTCCCCACGACTAGAG 58.813 55.000 0.00 0.00 0.00 2.43
691 692 0.460459 GCTTTCCCCACGACTAGAGC 60.460 60.000 0.00 0.00 0.00 4.09
692 693 0.895530 CTTTCCCCACGACTAGAGCA 59.104 55.000 0.00 0.00 0.00 4.26
693 694 0.895530 TTTCCCCACGACTAGAGCAG 59.104 55.000 0.00 0.00 0.00 4.24
694 695 1.605058 TTCCCCACGACTAGAGCAGC 61.605 60.000 0.00 0.00 0.00 5.25
695 696 2.351244 CCCCACGACTAGAGCAGCA 61.351 63.158 0.00 0.00 0.00 4.41
696 697 1.153745 CCCACGACTAGAGCAGCAC 60.154 63.158 0.00 0.00 0.00 4.40
697 698 1.153745 CCACGACTAGAGCAGCACC 60.154 63.158 0.00 0.00 0.00 5.01
698 699 1.586541 CACGACTAGAGCAGCACCA 59.413 57.895 0.00 0.00 0.00 4.17
699 700 0.174389 CACGACTAGAGCAGCACCAT 59.826 55.000 0.00 0.00 0.00 3.55
700 701 0.457851 ACGACTAGAGCAGCACCATC 59.542 55.000 0.00 0.00 0.00 3.51
701 702 0.249238 CGACTAGAGCAGCACCATCC 60.249 60.000 0.00 0.00 0.00 3.51
702 703 0.105778 GACTAGAGCAGCACCATCCC 59.894 60.000 0.00 0.00 0.00 3.85
703 704 1.068753 CTAGAGCAGCACCATCCCG 59.931 63.158 0.00 0.00 0.00 5.14
704 705 1.381191 TAGAGCAGCACCATCCCGA 60.381 57.895 0.00 0.00 0.00 5.14
705 706 0.760567 TAGAGCAGCACCATCCCGAT 60.761 55.000 0.00 0.00 0.00 4.18
706 707 1.596477 GAGCAGCACCATCCCGATC 60.596 63.158 0.00 0.00 0.00 3.69
707 708 2.969238 GCAGCACCATCCCGATCG 60.969 66.667 8.51 8.51 0.00 3.69
708 709 2.501128 CAGCACCATCCCGATCGT 59.499 61.111 15.09 0.00 0.00 3.73
709 710 1.884464 CAGCACCATCCCGATCGTG 60.884 63.158 15.09 1.95 33.84 4.35
710 711 2.186903 GCACCATCCCGATCGTGT 59.813 61.111 15.09 0.14 33.36 4.49
711 712 1.449601 GCACCATCCCGATCGTGTT 60.450 57.895 15.09 0.00 33.36 3.32
712 713 1.429148 GCACCATCCCGATCGTGTTC 61.429 60.000 15.09 0.00 33.36 3.18
804 835 0.721718 GATTTCAACCCTCGTGCTCG 59.278 55.000 0.81 0.81 38.55 5.03
806 837 4.717629 TCAACCCTCGTGCTCGCG 62.718 66.667 0.00 0.00 36.96 5.87
833 864 4.752879 GCCGTTCACCTGCCGCTA 62.753 66.667 0.00 0.00 0.00 4.26
841 3342 2.265739 CCTGCCGCTAGAGTGCAA 59.734 61.111 9.97 0.00 34.06 4.08
859 3360 0.814457 AAGAGACGAGAGCGCTGAAT 59.186 50.000 18.48 0.00 42.48 2.57
865 3366 0.873743 CGAGAGCGCTGAATCTTCCC 60.874 60.000 18.48 0.00 0.00 3.97
972 3474 0.965363 CAAGTCCACCCCCAAATCCG 60.965 60.000 0.00 0.00 0.00 4.18
1011 3514 3.813724 CTCCCCATGGACCAGCCC 61.814 72.222 15.22 0.00 35.03 5.19
1731 4234 0.179073 CCTGGAACCGCTATGACCTG 60.179 60.000 0.00 0.00 0.00 4.00
2084 4587 1.226746 GTCTGACAAGGTTGGTTCCG 58.773 55.000 2.24 0.00 0.00 4.30
2229 4732 1.197055 CTAGCGCGCGAAATTCAGTA 58.803 50.000 37.18 8.14 0.00 2.74
2277 4780 2.047274 CCGTCCAATCGGCAGTGT 60.047 61.111 0.00 0.00 43.96 3.55
2294 4797 2.028337 TGTGCGCACAAGCTCGTA 59.972 55.556 39.13 15.02 38.56 3.43
2312 4815 2.478370 CGTAATAAACGTCCCGCTGAGA 60.478 50.000 0.00 0.00 46.72 3.27
2323 4826 0.105593 CCGCTGAGATGTATGGCACT 59.894 55.000 0.00 0.00 0.00 4.40
2326 4829 2.208431 GCTGAGATGTATGGCACTGAC 58.792 52.381 0.00 0.00 0.00 3.51
2365 4868 0.029035 GCGCCTCAGCTCATGATTTG 59.971 55.000 0.00 0.00 37.28 2.32
2391 4894 1.478510 CTTGTCTCGGTGGCATCTAGT 59.521 52.381 0.00 0.00 0.00 2.57
2392 4895 0.817654 TGTCTCGGTGGCATCTAGTG 59.182 55.000 0.00 0.00 0.00 2.74
2393 4896 0.103208 GTCTCGGTGGCATCTAGTGG 59.897 60.000 0.00 0.00 0.00 4.00
2394 4897 0.324368 TCTCGGTGGCATCTAGTGGT 60.324 55.000 0.00 0.00 0.00 4.16
2395 4898 0.103208 CTCGGTGGCATCTAGTGGTC 59.897 60.000 0.00 0.00 0.00 4.02
2431 4939 6.415573 GTCAGTTGTAACGTTTATTTTGTGGG 59.584 38.462 5.91 0.00 0.00 4.61
2437 4945 4.722361 ACGTTTATTTTGTGGGTGTTGT 57.278 36.364 0.00 0.00 0.00 3.32
2453 4961 3.128068 GTGTTGTTCGTGGTCTTTCCTTT 59.872 43.478 0.00 0.00 37.07 3.11
2561 5069 6.345015 GCGTTTTCTCAGAAAAATAGCAACAC 60.345 38.462 21.70 6.94 36.03 3.32
2618 5126 5.938125 AGGTTATGAGTTGTTGGACATGTAC 59.062 40.000 0.00 0.00 0.00 2.90
2620 5128 6.128282 GGTTATGAGTTGTTGGACATGTACAG 60.128 42.308 11.40 0.00 0.00 2.74
2633 5141 5.016051 ACATGTACAGCCTGATTAGTGAG 57.984 43.478 0.00 0.00 0.00 3.51
2691 5200 1.060729 TCGGTTTCCTCCATTGGACA 58.939 50.000 0.00 0.00 35.58 4.02
2692 5201 1.003118 TCGGTTTCCTCCATTGGACAG 59.997 52.381 0.00 0.00 35.58 3.51
2730 5239 5.108254 GCATAGGATTTGCTAATTTTTCGCG 60.108 40.000 0.00 0.00 37.14 5.87
2837 5346 7.730084 TGAAATTTATGGTGGTGAAAACATCA 58.270 30.769 0.00 0.00 32.81 3.07
2929 5438 4.040755 ACTGCCCTTGGTCTCTGTATTAT 58.959 43.478 0.00 0.00 0.00 1.28
3028 5537 8.729805 AAAAACTGTTAGGCAATTCAATTCAA 57.270 26.923 0.00 0.00 0.00 2.69
3065 5574 7.801716 TTGTAATCGAAGAAAGATTATGGGG 57.198 36.000 0.00 0.00 43.58 4.96
3067 5576 7.343357 TGTAATCGAAGAAAGATTATGGGGTT 58.657 34.615 0.00 0.00 43.58 4.11
3068 5577 6.944234 AATCGAAGAAAGATTATGGGGTTC 57.056 37.500 0.00 0.00 43.58 3.62
3069 5578 5.429681 TCGAAGAAAGATTATGGGGTTCA 57.570 39.130 0.00 0.00 0.00 3.18
3070 5579 5.428253 TCGAAGAAAGATTATGGGGTTCAG 58.572 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.029288 CACAGCCTTGATGTCGCGT 61.029 57.895 5.77 0.00 26.01 6.01
1 2 2.743752 CCACAGCCTTGATGTCGCG 61.744 63.158 0.00 0.00 26.01 5.87
2 3 3.044059 GCCACAGCCTTGATGTCGC 62.044 63.158 0.00 0.00 28.62 5.19
3 4 1.236616 TTGCCACAGCCTTGATGTCG 61.237 55.000 0.00 0.00 38.69 4.35
4 5 1.135199 CATTGCCACAGCCTTGATGTC 60.135 52.381 0.00 0.00 38.69 3.06
5 6 0.892755 CATTGCCACAGCCTTGATGT 59.107 50.000 0.00 0.00 38.69 3.06
6 7 1.134367 CTCATTGCCACAGCCTTGATG 59.866 52.381 0.00 0.00 38.69 3.07
7 8 1.471119 CTCATTGCCACAGCCTTGAT 58.529 50.000 0.00 0.00 38.69 2.57
8 9 0.609957 CCTCATTGCCACAGCCTTGA 60.610 55.000 0.00 0.00 38.69 3.02
9 10 1.601419 CCCTCATTGCCACAGCCTTG 61.601 60.000 0.00 0.00 38.69 3.61
10 11 1.304713 CCCTCATTGCCACAGCCTT 60.305 57.895 0.00 0.00 38.69 4.35
11 12 1.578215 ATCCCTCATTGCCACAGCCT 61.578 55.000 0.00 0.00 38.69 4.58
12 13 1.076485 ATCCCTCATTGCCACAGCC 60.076 57.895 0.00 0.00 38.69 4.85
13 14 1.389609 CCATCCCTCATTGCCACAGC 61.390 60.000 0.00 0.00 40.48 4.40
14 15 0.033796 ACCATCCCTCATTGCCACAG 60.034 55.000 0.00 0.00 0.00 3.66
15 16 0.034186 GACCATCCCTCATTGCCACA 60.034 55.000 0.00 0.00 0.00 4.17
16 17 0.257039 AGACCATCCCTCATTGCCAC 59.743 55.000 0.00 0.00 0.00 5.01
17 18 1.770658 CTAGACCATCCCTCATTGCCA 59.229 52.381 0.00 0.00 0.00 4.92
18 19 1.544314 GCTAGACCATCCCTCATTGCC 60.544 57.143 0.00 0.00 0.00 4.52
19 20 1.544314 GGCTAGACCATCCCTCATTGC 60.544 57.143 0.00 0.00 38.86 3.56
20 21 2.053244 AGGCTAGACCATCCCTCATTG 58.947 52.381 0.00 0.00 43.14 2.82
21 22 2.503869 AGGCTAGACCATCCCTCATT 57.496 50.000 0.00 0.00 43.14 2.57
22 23 2.441001 CAAAGGCTAGACCATCCCTCAT 59.559 50.000 0.00 0.00 43.14 2.90
23 24 1.839994 CAAAGGCTAGACCATCCCTCA 59.160 52.381 0.00 0.00 43.14 3.86
24 25 1.475930 GCAAAGGCTAGACCATCCCTC 60.476 57.143 0.00 0.00 43.14 4.30
25 26 0.548510 GCAAAGGCTAGACCATCCCT 59.451 55.000 0.00 0.00 43.14 4.20
26 27 3.102090 GCAAAGGCTAGACCATCCC 57.898 57.895 0.00 0.00 43.14 3.85
37 38 0.532115 CCCATGGTGTTAGCAAAGGC 59.468 55.000 11.73 0.00 41.61 4.35
38 39 1.185315 CCCCATGGTGTTAGCAAAGG 58.815 55.000 11.73 0.00 0.00 3.11
39 40 1.923356 ACCCCATGGTGTTAGCAAAG 58.077 50.000 11.73 0.00 45.58 2.77
50 51 1.405105 CAATAGCGTGAAACCCCATGG 59.595 52.381 4.14 4.14 37.80 3.66
51 52 2.364632 TCAATAGCGTGAAACCCCATG 58.635 47.619 0.00 0.00 0.00 3.66
52 53 2.799126 TCAATAGCGTGAAACCCCAT 57.201 45.000 0.00 0.00 0.00 4.00
53 54 2.432444 CTTCAATAGCGTGAAACCCCA 58.568 47.619 2.81 0.00 37.08 4.96
54 55 1.132453 GCTTCAATAGCGTGAAACCCC 59.868 52.381 2.81 0.00 40.71 4.95
55 56 2.544480 GCTTCAATAGCGTGAAACCC 57.456 50.000 2.81 0.00 40.71 4.11
64 65 4.754114 AGAATCTGATTCCGCTTCAATAGC 59.246 41.667 23.12 0.00 40.40 2.97
65 66 6.857777 AAGAATCTGATTCCGCTTCAATAG 57.142 37.500 23.12 0.00 40.13 1.73
66 67 6.038603 CCAAAGAATCTGATTCCGCTTCAATA 59.961 38.462 23.12 0.00 40.13 1.90
67 68 5.163581 CCAAAGAATCTGATTCCGCTTCAAT 60.164 40.000 23.12 3.22 40.13 2.57
68 69 4.156556 CCAAAGAATCTGATTCCGCTTCAA 59.843 41.667 23.12 0.00 40.13 2.69
69 70 3.691118 CCAAAGAATCTGATTCCGCTTCA 59.309 43.478 23.12 0.00 40.13 3.02
70 71 3.941483 TCCAAAGAATCTGATTCCGCTTC 59.059 43.478 23.12 2.89 40.13 3.86
71 72 3.944015 CTCCAAAGAATCTGATTCCGCTT 59.056 43.478 23.12 13.33 40.13 4.68
72 73 3.539604 CTCCAAAGAATCTGATTCCGCT 58.460 45.455 23.12 8.64 40.13 5.52
73 74 2.615912 CCTCCAAAGAATCTGATTCCGC 59.384 50.000 23.12 3.46 40.13 5.54
74 75 3.878778 ACCTCCAAAGAATCTGATTCCG 58.121 45.455 23.12 13.72 40.13 4.30
75 76 7.056635 TGATTACCTCCAAAGAATCTGATTCC 58.943 38.462 23.12 8.73 40.13 3.01
76 77 8.511604 TTGATTACCTCCAAAGAATCTGATTC 57.488 34.615 20.14 20.14 39.56 2.52
77 78 9.484806 AATTGATTACCTCCAAAGAATCTGATT 57.515 29.630 1.81 1.81 31.03 2.57
78 79 9.484806 AAATTGATTACCTCCAAAGAATCTGAT 57.515 29.630 0.00 0.00 31.03 2.90
79 80 8.884124 AAATTGATTACCTCCAAAGAATCTGA 57.116 30.769 0.00 0.00 31.03 3.27
80 81 9.933723 AAAAATTGATTACCTCCAAAGAATCTG 57.066 29.630 0.00 0.00 31.03 2.90
81 82 9.933723 CAAAAATTGATTACCTCCAAAGAATCT 57.066 29.630 0.00 0.00 31.03 2.40
82 83 8.659491 GCAAAAATTGATTACCTCCAAAGAATC 58.341 33.333 0.00 0.00 0.00 2.52
83 84 8.156165 TGCAAAAATTGATTACCTCCAAAGAAT 58.844 29.630 0.00 0.00 0.00 2.40
84 85 7.504403 TGCAAAAATTGATTACCTCCAAAGAA 58.496 30.769 0.00 0.00 0.00 2.52
85 86 7.060383 TGCAAAAATTGATTACCTCCAAAGA 57.940 32.000 0.00 0.00 0.00 2.52
86 87 7.910441 ATGCAAAAATTGATTACCTCCAAAG 57.090 32.000 0.00 0.00 0.00 2.77
87 88 7.174599 CCAATGCAAAAATTGATTACCTCCAAA 59.825 33.333 0.00 0.00 39.46 3.28
88 89 6.654161 CCAATGCAAAAATTGATTACCTCCAA 59.346 34.615 0.00 0.00 39.46 3.53
89 90 6.013898 TCCAATGCAAAAATTGATTACCTCCA 60.014 34.615 0.00 0.00 39.46 3.86
90 91 6.313658 GTCCAATGCAAAAATTGATTACCTCC 59.686 38.462 0.00 0.00 39.46 4.30
91 92 6.873076 TGTCCAATGCAAAAATTGATTACCTC 59.127 34.615 0.00 0.00 39.46 3.85
92 93 6.767456 TGTCCAATGCAAAAATTGATTACCT 58.233 32.000 0.00 0.00 39.46 3.08
93 94 7.333921 TCATGTCCAATGCAAAAATTGATTACC 59.666 33.333 0.00 0.00 39.46 2.85
94 95 8.254178 TCATGTCCAATGCAAAAATTGATTAC 57.746 30.769 0.00 0.00 39.46 1.89
95 96 9.100554 GATCATGTCCAATGCAAAAATTGATTA 57.899 29.630 0.00 0.00 39.46 1.75
96 97 7.608376 TGATCATGTCCAATGCAAAAATTGATT 59.392 29.630 0.00 0.00 39.46 2.57
97 98 7.106890 TGATCATGTCCAATGCAAAAATTGAT 58.893 30.769 0.00 0.00 39.46 2.57
98 99 6.465084 TGATCATGTCCAATGCAAAAATTGA 58.535 32.000 0.00 0.00 39.46 2.57
99 100 6.729391 TGATCATGTCCAATGCAAAAATTG 57.271 33.333 0.00 0.00 37.30 2.32
100 101 7.148154 CCAATGATCATGTCCAATGCAAAAATT 60.148 33.333 9.46 0.00 0.00 1.82
101 102 6.317642 CCAATGATCATGTCCAATGCAAAAAT 59.682 34.615 9.46 0.00 0.00 1.82
102 103 5.644206 CCAATGATCATGTCCAATGCAAAAA 59.356 36.000 9.46 0.00 0.00 1.94
103 104 5.179533 CCAATGATCATGTCCAATGCAAAA 58.820 37.500 9.46 0.00 0.00 2.44
104 105 4.223255 ACCAATGATCATGTCCAATGCAAA 59.777 37.500 9.46 0.00 0.00 3.68
105 106 3.770388 ACCAATGATCATGTCCAATGCAA 59.230 39.130 9.46 0.00 0.00 4.08
106 107 3.131400 CACCAATGATCATGTCCAATGCA 59.869 43.478 9.46 0.00 0.00 3.96
107 108 3.491964 CCACCAATGATCATGTCCAATGC 60.492 47.826 9.46 0.00 0.00 3.56
108 109 3.069016 CCCACCAATGATCATGTCCAATG 59.931 47.826 9.46 2.30 0.00 2.82
109 110 3.052717 TCCCACCAATGATCATGTCCAAT 60.053 43.478 9.46 0.00 0.00 3.16
110 111 2.311243 TCCCACCAATGATCATGTCCAA 59.689 45.455 9.46 0.00 0.00 3.53
111 112 1.921748 TCCCACCAATGATCATGTCCA 59.078 47.619 9.46 0.00 0.00 4.02
112 113 2.734755 TCCCACCAATGATCATGTCC 57.265 50.000 9.46 0.00 0.00 4.02
113 114 2.295349 GCATCCCACCAATGATCATGTC 59.705 50.000 9.46 0.00 0.00 3.06
114 115 2.091499 AGCATCCCACCAATGATCATGT 60.091 45.455 9.46 0.37 0.00 3.21
115 116 2.296190 CAGCATCCCACCAATGATCATG 59.704 50.000 9.46 0.00 0.00 3.07
116 117 2.594131 CAGCATCCCACCAATGATCAT 58.406 47.619 1.18 1.18 0.00 2.45
117 118 2.025344 GCAGCATCCCACCAATGATCA 61.025 52.381 0.00 0.00 0.00 2.92
118 119 0.672342 GCAGCATCCCACCAATGATC 59.328 55.000 0.00 0.00 0.00 2.92
119 120 0.032912 TGCAGCATCCCACCAATGAT 60.033 50.000 0.00 0.00 0.00 2.45
120 121 0.251698 TTGCAGCATCCCACCAATGA 60.252 50.000 0.00 0.00 0.00 2.57
121 122 0.108520 GTTGCAGCATCCCACCAATG 60.109 55.000 0.00 0.00 0.00 2.82
122 123 0.542467 TGTTGCAGCATCCCACCAAT 60.542 50.000 0.00 0.00 0.00 3.16
123 124 0.758310 TTGTTGCAGCATCCCACCAA 60.758 50.000 3.36 0.00 0.00 3.67
124 125 1.152589 TTGTTGCAGCATCCCACCA 60.153 52.632 3.36 0.00 0.00 4.17
125 126 1.290009 GTTGTTGCAGCATCCCACC 59.710 57.895 3.36 0.00 0.00 4.61
126 127 0.388659 TTGTTGTTGCAGCATCCCAC 59.611 50.000 3.36 0.00 0.00 4.61
127 128 1.340088 ATTGTTGTTGCAGCATCCCA 58.660 45.000 3.36 0.00 0.00 4.37
128 129 3.806625 ATATTGTTGTTGCAGCATCCC 57.193 42.857 3.36 0.00 0.00 3.85
129 130 4.682860 GCATATATTGTTGTTGCAGCATCC 59.317 41.667 3.36 0.00 33.58 3.51
130 131 4.380678 CGCATATATTGTTGTTGCAGCATC 59.619 41.667 3.36 4.18 32.94 3.91
131 132 4.292599 CGCATATATTGTTGTTGCAGCAT 58.707 39.130 3.36 0.00 32.94 3.79
132 133 3.488890 CCGCATATATTGTTGTTGCAGCA 60.489 43.478 0.00 0.00 32.94 4.41
133 134 3.044986 CCGCATATATTGTTGTTGCAGC 58.955 45.455 0.00 0.00 32.94 5.25
134 135 4.550577 TCCGCATATATTGTTGTTGCAG 57.449 40.909 0.00 0.00 32.94 4.41
135 136 4.972514 TTCCGCATATATTGTTGTTGCA 57.027 36.364 0.00 0.00 32.94 4.08
136 137 6.208644 AGATTTCCGCATATATTGTTGTTGC 58.791 36.000 0.00 0.00 0.00 4.17
137 138 7.914871 TCAAGATTTCCGCATATATTGTTGTTG 59.085 33.333 0.00 0.00 0.00 3.33
138 139 7.995289 TCAAGATTTCCGCATATATTGTTGTT 58.005 30.769 0.00 0.00 0.00 2.83
139 140 7.566760 TCAAGATTTCCGCATATATTGTTGT 57.433 32.000 0.00 0.00 0.00 3.32
140 141 8.131100 AGTTCAAGATTTCCGCATATATTGTTG 58.869 33.333 0.00 0.00 0.00 3.33
141 142 8.225603 AGTTCAAGATTTCCGCATATATTGTT 57.774 30.769 0.00 0.00 0.00 2.83
142 143 7.807977 AGTTCAAGATTTCCGCATATATTGT 57.192 32.000 0.00 0.00 0.00 2.71
143 144 7.592533 CCAAGTTCAAGATTTCCGCATATATTG 59.407 37.037 0.00 0.00 0.00 1.90
144 145 7.651808 CCAAGTTCAAGATTTCCGCATATATT 58.348 34.615 0.00 0.00 0.00 1.28
145 146 6.294176 GCCAAGTTCAAGATTTCCGCATATAT 60.294 38.462 0.00 0.00 0.00 0.86
146 147 5.008613 GCCAAGTTCAAGATTTCCGCATATA 59.991 40.000 0.00 0.00 0.00 0.86
147 148 4.202050 GCCAAGTTCAAGATTTCCGCATAT 60.202 41.667 0.00 0.00 0.00 1.78
148 149 3.128589 GCCAAGTTCAAGATTTCCGCATA 59.871 43.478 0.00 0.00 0.00 3.14
149 150 2.094545 GCCAAGTTCAAGATTTCCGCAT 60.095 45.455 0.00 0.00 0.00 4.73
150 151 1.269448 GCCAAGTTCAAGATTTCCGCA 59.731 47.619 0.00 0.00 0.00 5.69
151 152 1.541588 AGCCAAGTTCAAGATTTCCGC 59.458 47.619 0.00 0.00 0.00 5.54
152 153 3.181520 CGTAGCCAAGTTCAAGATTTCCG 60.182 47.826 0.00 0.00 0.00 4.30
153 154 3.127030 CCGTAGCCAAGTTCAAGATTTCC 59.873 47.826 0.00 0.00 0.00 3.13
154 155 4.000988 TCCGTAGCCAAGTTCAAGATTTC 58.999 43.478 0.00 0.00 0.00 2.17
155 156 4.015872 TCCGTAGCCAAGTTCAAGATTT 57.984 40.909 0.00 0.00 0.00 2.17
156 157 3.695830 TCCGTAGCCAAGTTCAAGATT 57.304 42.857 0.00 0.00 0.00 2.40
157 158 3.055094 ACATCCGTAGCCAAGTTCAAGAT 60.055 43.478 0.00 0.00 0.00 2.40
158 159 2.301870 ACATCCGTAGCCAAGTTCAAGA 59.698 45.455 0.00 0.00 0.00 3.02
159 160 2.699954 ACATCCGTAGCCAAGTTCAAG 58.300 47.619 0.00 0.00 0.00 3.02
160 161 2.851263 ACATCCGTAGCCAAGTTCAA 57.149 45.000 0.00 0.00 0.00 2.69
161 162 2.167693 CCTACATCCGTAGCCAAGTTCA 59.832 50.000 0.00 0.00 43.33 3.18
162 163 2.483188 CCCTACATCCGTAGCCAAGTTC 60.483 54.545 0.00 0.00 43.33 3.01
163 164 1.485066 CCCTACATCCGTAGCCAAGTT 59.515 52.381 0.00 0.00 43.33 2.66
164 165 1.120530 CCCTACATCCGTAGCCAAGT 58.879 55.000 0.00 0.00 43.33 3.16
165 166 1.410004 TCCCTACATCCGTAGCCAAG 58.590 55.000 0.00 0.00 43.33 3.61
166 167 1.760613 CTTCCCTACATCCGTAGCCAA 59.239 52.381 0.00 0.00 43.33 4.52
167 168 1.410004 CTTCCCTACATCCGTAGCCA 58.590 55.000 0.00 0.00 43.33 4.75
168 169 0.680061 CCTTCCCTACATCCGTAGCC 59.320 60.000 0.00 0.00 43.33 3.93
169 170 1.340568 GACCTTCCCTACATCCGTAGC 59.659 57.143 0.00 0.00 43.33 3.58
170 171 2.662866 TGACCTTCCCTACATCCGTAG 58.337 52.381 0.00 0.00 44.14 3.51
171 172 2.832643 TGACCTTCCCTACATCCGTA 57.167 50.000 0.00 0.00 0.00 4.02
172 173 1.946984 TTGACCTTCCCTACATCCGT 58.053 50.000 0.00 0.00 0.00 4.69
173 174 3.560636 AATTGACCTTCCCTACATCCG 57.439 47.619 0.00 0.00 0.00 4.18
174 175 6.239036 GCATAAAATTGACCTTCCCTACATCC 60.239 42.308 0.00 0.00 0.00 3.51
175 176 6.321181 TGCATAAAATTGACCTTCCCTACATC 59.679 38.462 0.00 0.00 0.00 3.06
176 177 6.096846 GTGCATAAAATTGACCTTCCCTACAT 59.903 38.462 0.00 0.00 0.00 2.29
177 178 5.417580 GTGCATAAAATTGACCTTCCCTACA 59.582 40.000 0.00 0.00 0.00 2.74
178 179 5.652452 AGTGCATAAAATTGACCTTCCCTAC 59.348 40.000 0.00 0.00 0.00 3.18
179 180 5.652014 CAGTGCATAAAATTGACCTTCCCTA 59.348 40.000 0.00 0.00 0.00 3.53
180 181 4.463891 CAGTGCATAAAATTGACCTTCCCT 59.536 41.667 0.00 0.00 0.00 4.20
181 182 4.220602 ACAGTGCATAAAATTGACCTTCCC 59.779 41.667 0.00 0.00 0.00 3.97
182 183 5.391312 ACAGTGCATAAAATTGACCTTCC 57.609 39.130 0.00 0.00 0.00 3.46
183 184 7.713764 AAAACAGTGCATAAAATTGACCTTC 57.286 32.000 0.00 0.00 0.00 3.46
184 185 8.637986 TCTAAAACAGTGCATAAAATTGACCTT 58.362 29.630 0.00 0.00 0.00 3.50
185 186 8.177119 TCTAAAACAGTGCATAAAATTGACCT 57.823 30.769 0.00 0.00 0.00 3.85
186 187 8.296713 TCTCTAAAACAGTGCATAAAATTGACC 58.703 33.333 0.00 0.00 0.00 4.02
187 188 9.334693 CTCTCTAAAACAGTGCATAAAATTGAC 57.665 33.333 0.00 0.00 0.00 3.18
188 189 8.514594 CCTCTCTAAAACAGTGCATAAAATTGA 58.485 33.333 0.00 0.00 0.00 2.57
189 190 7.274250 GCCTCTCTAAAACAGTGCATAAAATTG 59.726 37.037 0.00 0.00 0.00 2.32
190 191 7.177392 AGCCTCTCTAAAACAGTGCATAAAATT 59.823 33.333 0.00 0.00 0.00 1.82
191 192 6.660949 AGCCTCTCTAAAACAGTGCATAAAAT 59.339 34.615 0.00 0.00 0.00 1.82
192 193 6.003950 AGCCTCTCTAAAACAGTGCATAAAA 58.996 36.000 0.00 0.00 0.00 1.52
193 194 5.560724 AGCCTCTCTAAAACAGTGCATAAA 58.439 37.500 0.00 0.00 0.00 1.40
194 195 5.165961 AGCCTCTCTAAAACAGTGCATAA 57.834 39.130 0.00 0.00 0.00 1.90
195 196 4.826274 AGCCTCTCTAAAACAGTGCATA 57.174 40.909 0.00 0.00 0.00 3.14
196 197 3.710209 AGCCTCTCTAAAACAGTGCAT 57.290 42.857 0.00 0.00 0.00 3.96
197 198 4.617253 TTAGCCTCTCTAAAACAGTGCA 57.383 40.909 0.00 0.00 34.50 4.57
198 199 6.256757 CACTATTAGCCTCTCTAAAACAGTGC 59.743 42.308 0.00 0.00 40.38 4.40
199 200 7.324178 ACACTATTAGCCTCTCTAAAACAGTG 58.676 38.462 15.26 15.26 43.00 3.66
200 201 7.483580 ACACTATTAGCCTCTCTAAAACAGT 57.516 36.000 0.00 0.00 40.38 3.55
201 202 7.201565 GCAACACTATTAGCCTCTCTAAAACAG 60.202 40.741 0.00 0.00 40.38 3.16
202 203 6.594159 GCAACACTATTAGCCTCTCTAAAACA 59.406 38.462 0.00 0.00 40.38 2.83
203 204 6.819146 AGCAACACTATTAGCCTCTCTAAAAC 59.181 38.462 0.00 0.00 40.38 2.43
204 205 6.947464 AGCAACACTATTAGCCTCTCTAAAA 58.053 36.000 0.00 0.00 40.38 1.52
205 206 6.154534 TGAGCAACACTATTAGCCTCTCTAAA 59.845 38.462 0.00 0.00 40.38 1.85
206 207 5.656859 TGAGCAACACTATTAGCCTCTCTAA 59.343 40.000 0.00 0.00 41.17 2.10
207 208 5.201243 TGAGCAACACTATTAGCCTCTCTA 58.799 41.667 0.00 0.00 0.00 2.43
208 209 4.026744 TGAGCAACACTATTAGCCTCTCT 58.973 43.478 0.00 0.00 0.00 3.10
209 210 4.392921 TGAGCAACACTATTAGCCTCTC 57.607 45.455 0.00 0.00 0.00 3.20
210 211 4.406972 TCATGAGCAACACTATTAGCCTCT 59.593 41.667 0.00 0.00 0.00 3.69
211 212 4.697514 TCATGAGCAACACTATTAGCCTC 58.302 43.478 0.00 0.00 0.00 4.70
212 213 4.701765 CTCATGAGCAACACTATTAGCCT 58.298 43.478 10.38 0.00 0.00 4.58
256 257 9.990868 ACCATCCCAAATACTAGAAACTTTATT 57.009 29.630 0.00 0.00 0.00 1.40
257 258 9.408648 CACCATCCCAAATACTAGAAACTTTAT 57.591 33.333 0.00 0.00 0.00 1.40
258 259 8.607713 TCACCATCCCAAATACTAGAAACTTTA 58.392 33.333 0.00 0.00 0.00 1.85
259 260 7.466804 TCACCATCCCAAATACTAGAAACTTT 58.533 34.615 0.00 0.00 0.00 2.66
260 261 7.027874 TCACCATCCCAAATACTAGAAACTT 57.972 36.000 0.00 0.00 0.00 2.66
261 262 6.636454 TCACCATCCCAAATACTAGAAACT 57.364 37.500 0.00 0.00 0.00 2.66
262 263 6.486993 GGATCACCATCCCAAATACTAGAAAC 59.513 42.308 0.00 0.00 42.91 2.78
263 264 6.601332 GGATCACCATCCCAAATACTAGAAA 58.399 40.000 0.00 0.00 42.91 2.52
264 265 6.187727 GGATCACCATCCCAAATACTAGAA 57.812 41.667 0.00 0.00 42.91 2.10
265 266 5.825593 GGATCACCATCCCAAATACTAGA 57.174 43.478 0.00 0.00 42.91 2.43
277 278 2.106684 GGAAACTAGGGGGATCACCATC 59.893 54.545 17.85 0.00 42.91 3.51
278 279 2.136026 GGAAACTAGGGGGATCACCAT 58.864 52.381 17.85 12.36 42.91 3.55
279 280 1.082194 AGGAAACTAGGGGGATCACCA 59.918 52.381 17.85 0.00 39.63 4.17
280 281 1.769465 GAGGAAACTAGGGGGATCACC 59.231 57.143 5.01 5.01 44.43 4.02
281 282 1.769465 GGAGGAAACTAGGGGGATCAC 59.231 57.143 0.00 0.00 44.43 3.06
282 283 1.657162 AGGAGGAAACTAGGGGGATCA 59.343 52.381 0.00 0.00 44.43 2.92
283 284 2.331166 GAGGAGGAAACTAGGGGGATC 58.669 57.143 0.00 0.00 44.43 3.36
284 285 1.413227 CGAGGAGGAAACTAGGGGGAT 60.413 57.143 0.00 0.00 44.43 3.85
285 286 0.032416 CGAGGAGGAAACTAGGGGGA 60.032 60.000 0.00 0.00 44.43 4.81
286 287 1.049289 CCGAGGAGGAAACTAGGGGG 61.049 65.000 0.00 0.00 44.43 5.40
287 288 0.325390 ACCGAGGAGGAAACTAGGGG 60.325 60.000 0.00 0.00 44.43 4.79
288 289 2.449137 TACCGAGGAGGAAACTAGGG 57.551 55.000 0.00 0.00 44.43 3.53
289 290 3.768215 AGTTTACCGAGGAGGAAACTAGG 59.232 47.826 14.84 0.00 42.75 3.02
291 292 4.400567 GCTAGTTTACCGAGGAGGAAACTA 59.599 45.833 18.25 18.25 42.75 2.24
292 293 3.195182 GCTAGTTTACCGAGGAGGAAACT 59.805 47.826 18.07 18.07 44.61 2.66
293 294 3.195182 AGCTAGTTTACCGAGGAGGAAAC 59.805 47.826 0.00 3.90 45.00 2.78
294 295 3.194968 CAGCTAGTTTACCGAGGAGGAAA 59.805 47.826 0.00 0.00 45.00 3.13
295 296 2.758979 CAGCTAGTTTACCGAGGAGGAA 59.241 50.000 0.00 0.00 45.00 3.36
296 297 2.025605 TCAGCTAGTTTACCGAGGAGGA 60.026 50.000 0.00 0.00 45.00 3.71
298 299 3.632604 TCATCAGCTAGTTTACCGAGGAG 59.367 47.826 0.00 0.00 0.00 3.69
299 300 3.628008 TCATCAGCTAGTTTACCGAGGA 58.372 45.455 0.00 0.00 0.00 3.71
300 301 4.202161 ACATCATCAGCTAGTTTACCGAGG 60.202 45.833 0.00 0.00 0.00 4.63
301 302 4.938080 ACATCATCAGCTAGTTTACCGAG 58.062 43.478 0.00 0.00 0.00 4.63
302 303 6.459670 TTACATCATCAGCTAGTTTACCGA 57.540 37.500 0.00 0.00 0.00 4.69
303 304 6.533723 TGTTTACATCATCAGCTAGTTTACCG 59.466 38.462 0.00 0.00 0.00 4.02
304 305 7.843490 TGTTTACATCATCAGCTAGTTTACC 57.157 36.000 0.00 0.00 0.00 2.85
307 308 9.630098 CAAAATGTTTACATCATCAGCTAGTTT 57.370 29.630 0.00 0.00 35.10 2.66
308 309 8.796475 ACAAAATGTTTACATCATCAGCTAGTT 58.204 29.630 0.00 0.00 35.10 2.24
309 310 8.340618 ACAAAATGTTTACATCATCAGCTAGT 57.659 30.769 0.00 0.00 35.10 2.57
310 311 9.069078 CAACAAAATGTTTACATCATCAGCTAG 57.931 33.333 0.00 0.00 38.77 3.42
311 312 8.791675 TCAACAAAATGTTTACATCATCAGCTA 58.208 29.630 0.00 0.00 38.77 3.32
312 313 7.660112 TCAACAAAATGTTTACATCATCAGCT 58.340 30.769 0.00 0.00 38.77 4.24
313 314 7.596248 ACTCAACAAAATGTTTACATCATCAGC 59.404 33.333 0.00 0.00 38.77 4.26
314 315 9.467258 AACTCAACAAAATGTTTACATCATCAG 57.533 29.630 0.00 0.00 38.77 2.90
331 332 9.719355 TCATGACTAGCTTTATTAACTCAACAA 57.281 29.630 0.00 0.00 0.00 2.83
332 333 9.890629 ATCATGACTAGCTTTATTAACTCAACA 57.109 29.630 0.00 0.00 0.00 3.33
334 335 9.330063 CCATCATGACTAGCTTTATTAACTCAA 57.670 33.333 0.00 0.00 0.00 3.02
335 336 7.442364 GCCATCATGACTAGCTTTATTAACTCA 59.558 37.037 0.00 0.00 0.00 3.41
336 337 7.095017 GGCCATCATGACTAGCTTTATTAACTC 60.095 40.741 0.00 0.00 0.00 3.01
337 338 6.712547 GGCCATCATGACTAGCTTTATTAACT 59.287 38.462 0.00 0.00 0.00 2.24
338 339 6.347725 CGGCCATCATGACTAGCTTTATTAAC 60.348 42.308 2.24 0.00 0.00 2.01
339 340 5.700832 CGGCCATCATGACTAGCTTTATTAA 59.299 40.000 2.24 0.00 0.00 1.40
340 341 5.221641 ACGGCCATCATGACTAGCTTTATTA 60.222 40.000 2.24 0.00 0.00 0.98
341 342 4.067896 CGGCCATCATGACTAGCTTTATT 58.932 43.478 2.24 0.00 0.00 1.40
342 343 3.071602 ACGGCCATCATGACTAGCTTTAT 59.928 43.478 2.24 0.00 0.00 1.40
343 344 2.434336 ACGGCCATCATGACTAGCTTTA 59.566 45.455 2.24 0.00 0.00 1.85
344 345 1.210478 ACGGCCATCATGACTAGCTTT 59.790 47.619 2.24 0.00 0.00 3.51
345 346 0.833287 ACGGCCATCATGACTAGCTT 59.167 50.000 2.24 0.00 0.00 3.74
346 347 0.833287 AACGGCCATCATGACTAGCT 59.167 50.000 2.24 0.00 0.00 3.32
347 348 1.202580 AGAACGGCCATCATGACTAGC 60.203 52.381 2.24 0.63 0.00 3.42
348 349 2.898729 AGAACGGCCATCATGACTAG 57.101 50.000 2.24 0.00 0.00 2.57
349 350 4.746535 TTTAGAACGGCCATCATGACTA 57.253 40.909 2.24 0.00 0.00 2.59
350 351 3.627395 TTTAGAACGGCCATCATGACT 57.373 42.857 2.24 0.00 0.00 3.41
351 352 4.695217 TTTTTAGAACGGCCATCATGAC 57.305 40.909 2.24 0.00 0.00 3.06
390 391 9.692749 CATCTAGAGTGTTTTAACAAGACTGTA 57.307 33.333 0.00 5.33 41.21 2.74
391 392 7.171678 GCATCTAGAGTGTTTTAACAAGACTGT 59.828 37.037 0.00 4.66 41.21 3.55
392 393 7.513968 GCATCTAGAGTGTTTTAACAAGACTG 58.486 38.462 0.00 0.64 41.21 3.51
393 394 6.366332 CGCATCTAGAGTGTTTTAACAAGACT 59.634 38.462 0.00 0.94 41.21 3.24
394 395 6.145696 ACGCATCTAGAGTGTTTTAACAAGAC 59.854 38.462 0.00 0.00 41.21 3.01
395 396 6.220930 ACGCATCTAGAGTGTTTTAACAAGA 58.779 36.000 0.00 0.00 41.21 3.02
396 397 6.467723 ACGCATCTAGAGTGTTTTAACAAG 57.532 37.500 0.00 0.00 41.21 3.16
397 398 6.704493 AGAACGCATCTAGAGTGTTTTAACAA 59.296 34.615 16.83 0.00 39.57 2.83
398 399 6.220930 AGAACGCATCTAGAGTGTTTTAACA 58.779 36.000 16.83 0.00 39.57 2.41
399 400 6.707599 AGAACGCATCTAGAGTGTTTTAAC 57.292 37.500 16.83 8.57 39.57 2.01
400 401 8.086522 ACTTAGAACGCATCTAGAGTGTTTTAA 58.913 33.333 18.94 18.94 41.59 1.52
401 402 7.600065 ACTTAGAACGCATCTAGAGTGTTTTA 58.400 34.615 16.83 13.99 41.59 1.52
402 403 6.456501 ACTTAGAACGCATCTAGAGTGTTTT 58.543 36.000 16.83 14.67 41.59 2.43
403 404 6.026947 ACTTAGAACGCATCTAGAGTGTTT 57.973 37.500 16.83 11.70 41.59 2.83
404 405 5.646577 ACTTAGAACGCATCTAGAGTGTT 57.353 39.130 16.13 16.13 41.59 3.32
405 406 6.730175 CATACTTAGAACGCATCTAGAGTGT 58.270 40.000 0.00 0.73 41.59 3.55
406 407 5.627367 GCATACTTAGAACGCATCTAGAGTG 59.373 44.000 0.00 0.09 41.59 3.51
407 408 5.278561 GGCATACTTAGAACGCATCTAGAGT 60.279 44.000 0.00 13.16 41.59 3.24
408 409 5.157781 GGCATACTTAGAACGCATCTAGAG 58.842 45.833 0.00 0.00 41.59 2.43
409 410 4.583073 TGGCATACTTAGAACGCATCTAGA 59.417 41.667 0.00 0.00 41.59 2.43
410 411 4.871513 TGGCATACTTAGAACGCATCTAG 58.128 43.478 0.00 0.00 41.59 2.43
411 412 4.929819 TGGCATACTTAGAACGCATCTA 57.070 40.909 0.00 0.00 39.71 1.98
412 413 3.819564 TGGCATACTTAGAACGCATCT 57.180 42.857 0.00 0.00 42.48 2.90
413 414 6.102663 AGATATGGCATACTTAGAACGCATC 58.897 40.000 9.83 0.00 0.00 3.91
414 415 6.042638 AGATATGGCATACTTAGAACGCAT 57.957 37.500 9.83 0.00 0.00 4.73
415 416 5.468540 AGATATGGCATACTTAGAACGCA 57.531 39.130 9.83 0.00 0.00 5.24
416 417 6.853720 TCTAGATATGGCATACTTAGAACGC 58.146 40.000 19.56 0.00 0.00 4.84
417 418 9.509855 GAATCTAGATATGGCATACTTAGAACG 57.490 37.037 23.00 6.09 0.00 3.95
428 429 8.678199 CGAACATAGTAGAATCTAGATATGGCA 58.322 37.037 18.83 0.00 0.00 4.92
429 430 8.679100 ACGAACATAGTAGAATCTAGATATGGC 58.321 37.037 18.83 12.70 0.00 4.40
445 446 9.826574 TCCTAGCATAAAATTAACGAACATAGT 57.173 29.630 0.00 0.00 0.00 2.12
449 450 9.168451 TGAATCCTAGCATAAAATTAACGAACA 57.832 29.630 0.00 0.00 0.00 3.18
452 453 8.289618 GCATGAATCCTAGCATAAAATTAACGA 58.710 33.333 0.00 0.00 0.00 3.85
453 454 8.075574 TGCATGAATCCTAGCATAAAATTAACG 58.924 33.333 0.00 0.00 31.05 3.18
454 455 9.748708 TTGCATGAATCCTAGCATAAAATTAAC 57.251 29.630 0.00 0.00 36.80 2.01
455 456 9.970395 CTTGCATGAATCCTAGCATAAAATTAA 57.030 29.630 0.00 0.00 36.80 1.40
456 457 9.135189 ACTTGCATGAATCCTAGCATAAAATTA 57.865 29.630 6.60 0.00 36.80 1.40
457 458 8.015185 ACTTGCATGAATCCTAGCATAAAATT 57.985 30.769 6.60 0.00 36.80 1.82
458 459 7.592885 ACTTGCATGAATCCTAGCATAAAAT 57.407 32.000 6.60 0.00 36.80 1.82
459 460 8.518430 TTACTTGCATGAATCCTAGCATAAAA 57.482 30.769 6.60 0.00 36.80 1.52
460 461 8.696043 ATTACTTGCATGAATCCTAGCATAAA 57.304 30.769 6.60 0.00 36.80 1.40
461 462 8.696043 AATTACTTGCATGAATCCTAGCATAA 57.304 30.769 6.60 0.00 36.80 1.90
462 463 8.696043 AAATTACTTGCATGAATCCTAGCATA 57.304 30.769 6.60 0.00 36.80 3.14
463 464 7.504911 AGAAATTACTTGCATGAATCCTAGCAT 59.495 33.333 6.60 0.00 36.80 3.79
464 465 6.830324 AGAAATTACTTGCATGAATCCTAGCA 59.170 34.615 6.60 0.00 34.79 3.49
465 466 7.269477 AGAAATTACTTGCATGAATCCTAGC 57.731 36.000 6.60 0.00 0.00 3.42
491 492 9.816354 CTCAATTAAACTGAAGAAAGGGAAAAA 57.184 29.630 0.00 0.00 0.00 1.94
492 493 8.977412 ACTCAATTAAACTGAAGAAAGGGAAAA 58.023 29.630 0.00 0.00 0.00 2.29
493 494 8.533569 ACTCAATTAAACTGAAGAAAGGGAAA 57.466 30.769 0.00 0.00 0.00 3.13
494 495 8.533569 AACTCAATTAAACTGAAGAAAGGGAA 57.466 30.769 0.00 0.00 0.00 3.97
495 496 9.063615 GTAACTCAATTAAACTGAAGAAAGGGA 57.936 33.333 0.00 0.00 0.00 4.20
496 497 9.067986 AGTAACTCAATTAAACTGAAGAAAGGG 57.932 33.333 0.00 0.00 0.00 3.95
571 572 9.449719 ACGATTCTAAGGAAACAGAACAAATAT 57.550 29.630 0.00 0.00 33.78 1.28
572 573 8.842358 ACGATTCTAAGGAAACAGAACAAATA 57.158 30.769 0.00 0.00 33.78 1.40
573 574 7.745620 ACGATTCTAAGGAAACAGAACAAAT 57.254 32.000 0.00 0.00 33.78 2.32
574 575 7.095940 CGTACGATTCTAAGGAAACAGAACAAA 60.096 37.037 10.44 0.00 33.78 2.83
575 576 6.364165 CGTACGATTCTAAGGAAACAGAACAA 59.636 38.462 10.44 0.00 33.78 2.83
576 577 5.860182 CGTACGATTCTAAGGAAACAGAACA 59.140 40.000 10.44 0.00 33.78 3.18
577 578 5.860716 ACGTACGATTCTAAGGAAACAGAAC 59.139 40.000 24.41 0.00 33.78 3.01
578 579 6.017400 ACGTACGATTCTAAGGAAACAGAA 57.983 37.500 24.41 0.00 34.90 3.02
579 580 5.633830 ACGTACGATTCTAAGGAAACAGA 57.366 39.130 24.41 0.00 34.90 3.41
580 581 7.025963 AGTTACGTACGATTCTAAGGAAACAG 58.974 38.462 24.41 0.00 34.90 3.16
581 582 6.913170 AGTTACGTACGATTCTAAGGAAACA 58.087 36.000 24.41 0.00 34.90 2.83
582 583 8.316777 GTAGTTACGTACGATTCTAAGGAAAC 57.683 38.462 24.41 9.29 34.90 2.78
614 615 9.981114 AAGACAAGAATTTAAAACGGATGAAAT 57.019 25.926 0.00 0.00 0.00 2.17
652 653 9.971922 GGAAAGCTTGCTTGATACATTTATATT 57.028 29.630 8.73 0.00 0.00 1.28
653 654 8.579863 GGGAAAGCTTGCTTGATACATTTATAT 58.420 33.333 8.73 0.00 0.00 0.86
654 655 7.014230 GGGGAAAGCTTGCTTGATACATTTATA 59.986 37.037 8.73 0.00 0.00 0.98
655 656 6.183360 GGGGAAAGCTTGCTTGATACATTTAT 60.183 38.462 8.73 0.00 0.00 1.40
656 657 5.127031 GGGGAAAGCTTGCTTGATACATTTA 59.873 40.000 8.73 0.00 0.00 1.40
657 658 4.081476 GGGGAAAGCTTGCTTGATACATTT 60.081 41.667 8.73 0.00 0.00 2.32
658 659 3.448660 GGGGAAAGCTTGCTTGATACATT 59.551 43.478 8.73 0.00 0.00 2.71
659 660 3.026694 GGGGAAAGCTTGCTTGATACAT 58.973 45.455 8.73 0.00 0.00 2.29
660 661 2.224992 TGGGGAAAGCTTGCTTGATACA 60.225 45.455 8.73 4.20 0.00 2.29
661 662 2.164422 GTGGGGAAAGCTTGCTTGATAC 59.836 50.000 8.73 0.00 0.00 2.24
662 663 2.446435 GTGGGGAAAGCTTGCTTGATA 58.554 47.619 8.73 0.00 0.00 2.15
663 664 1.260544 GTGGGGAAAGCTTGCTTGAT 58.739 50.000 8.73 0.00 0.00 2.57
664 665 1.172180 CGTGGGGAAAGCTTGCTTGA 61.172 55.000 8.73 0.00 0.00 3.02
665 666 1.172180 TCGTGGGGAAAGCTTGCTTG 61.172 55.000 8.73 0.00 0.00 4.01
666 667 1.150536 TCGTGGGGAAAGCTTGCTT 59.849 52.632 3.95 1.55 0.00 3.91
667 668 1.600916 GTCGTGGGGAAAGCTTGCT 60.601 57.895 3.95 0.00 0.00 3.91
668 669 0.321298 TAGTCGTGGGGAAAGCTTGC 60.321 55.000 0.00 0.00 0.00 4.01
669 670 1.275291 TCTAGTCGTGGGGAAAGCTTG 59.725 52.381 0.00 0.00 0.00 4.01
670 671 1.550976 CTCTAGTCGTGGGGAAAGCTT 59.449 52.381 0.00 0.00 0.00 3.74
671 672 1.187087 CTCTAGTCGTGGGGAAAGCT 58.813 55.000 0.00 0.00 0.00 3.74
672 673 0.460459 GCTCTAGTCGTGGGGAAAGC 60.460 60.000 0.00 0.00 0.00 3.51
673 674 0.895530 TGCTCTAGTCGTGGGGAAAG 59.104 55.000 0.00 0.00 0.00 2.62
674 675 0.895530 CTGCTCTAGTCGTGGGGAAA 59.104 55.000 0.00 0.00 0.00 3.13
675 676 1.605058 GCTGCTCTAGTCGTGGGGAA 61.605 60.000 0.00 0.00 0.00 3.97
676 677 2.052690 GCTGCTCTAGTCGTGGGGA 61.053 63.158 0.00 0.00 0.00 4.81
677 678 2.351244 TGCTGCTCTAGTCGTGGGG 61.351 63.158 0.00 0.00 0.00 4.96
678 679 1.153745 GTGCTGCTCTAGTCGTGGG 60.154 63.158 0.00 0.00 0.00 4.61
679 680 1.153745 GGTGCTGCTCTAGTCGTGG 60.154 63.158 0.00 0.00 0.00 4.94
680 681 0.174389 ATGGTGCTGCTCTAGTCGTG 59.826 55.000 0.00 0.00 0.00 4.35
681 682 0.457851 GATGGTGCTGCTCTAGTCGT 59.542 55.000 0.00 0.00 0.00 4.34
682 683 0.249238 GGATGGTGCTGCTCTAGTCG 60.249 60.000 0.00 0.00 0.00 4.18
683 684 0.105778 GGGATGGTGCTGCTCTAGTC 59.894 60.000 0.00 0.00 0.00 2.59
684 685 1.680522 CGGGATGGTGCTGCTCTAGT 61.681 60.000 0.00 0.00 0.00 2.57
685 686 1.068753 CGGGATGGTGCTGCTCTAG 59.931 63.158 0.00 0.00 0.00 2.43
686 687 0.760567 ATCGGGATGGTGCTGCTCTA 60.761 55.000 0.00 0.00 0.00 2.43
687 688 2.037620 GATCGGGATGGTGCTGCTCT 62.038 60.000 0.00 0.00 0.00 4.09
688 689 1.596477 GATCGGGATGGTGCTGCTC 60.596 63.158 0.00 0.00 0.00 4.26
689 690 2.507944 GATCGGGATGGTGCTGCT 59.492 61.111 0.00 0.00 0.00 4.24
690 691 2.969238 CGATCGGGATGGTGCTGC 60.969 66.667 7.38 0.00 0.00 5.25
691 692 1.884464 CACGATCGGGATGGTGCTG 60.884 63.158 20.98 0.80 39.87 4.41
692 693 1.899437 AACACGATCGGGATGGTGCT 61.899 55.000 26.96 8.41 46.94 4.40
693 694 1.429148 GAACACGATCGGGATGGTGC 61.429 60.000 26.96 6.37 46.94 5.01
695 696 0.460311 GAGAACACGATCGGGATGGT 59.540 55.000 26.96 9.81 0.00 3.55
696 697 0.249489 GGAGAACACGATCGGGATGG 60.249 60.000 26.96 7.88 0.00 3.51
697 698 0.595053 CGGAGAACACGATCGGGATG 60.595 60.000 26.96 13.71 0.00 3.51
698 699 1.734137 CGGAGAACACGATCGGGAT 59.266 57.895 26.96 13.49 0.00 3.85
699 700 2.412323 CCGGAGAACACGATCGGGA 61.412 63.158 26.96 0.00 37.96 5.14
700 701 2.104331 CCGGAGAACACGATCGGG 59.896 66.667 17.58 17.58 37.35 5.14
701 702 1.226603 GACCGGAGAACACGATCGG 60.227 63.158 20.98 10.92 45.42 4.18
702 703 0.109458 TTGACCGGAGAACACGATCG 60.109 55.000 14.88 14.88 0.00 3.69
703 704 1.336517 TGTTGACCGGAGAACACGATC 60.337 52.381 9.46 0.00 0.00 3.69
704 705 0.677288 TGTTGACCGGAGAACACGAT 59.323 50.000 9.46 0.00 0.00 3.73
705 706 0.677288 ATGTTGACCGGAGAACACGA 59.323 50.000 20.39 3.99 34.98 4.35
706 707 1.068474 GATGTTGACCGGAGAACACG 58.932 55.000 20.39 0.00 34.98 4.49
707 708 2.288825 TGAGATGTTGACCGGAGAACAC 60.289 50.000 20.39 15.22 34.98 3.32
708 709 1.967779 TGAGATGTTGACCGGAGAACA 59.032 47.619 20.30 20.30 36.54 3.18
709 710 2.028930 AGTGAGATGTTGACCGGAGAAC 60.029 50.000 9.46 11.06 0.00 3.01
710 711 2.231478 GAGTGAGATGTTGACCGGAGAA 59.769 50.000 9.46 0.00 0.00 2.87
711 712 1.819288 GAGTGAGATGTTGACCGGAGA 59.181 52.381 9.46 0.00 0.00 3.71
712 713 1.468224 CGAGTGAGATGTTGACCGGAG 60.468 57.143 9.46 0.00 0.00 4.63
806 837 4.980805 TGAACGGCGACCTGGCAC 62.981 66.667 16.62 0.00 45.16 5.01
832 863 1.740585 GCTCTCGTCTCTTGCACTCTA 59.259 52.381 0.00 0.00 0.00 2.43
833 864 0.525761 GCTCTCGTCTCTTGCACTCT 59.474 55.000 0.00 0.00 0.00 3.24
841 3342 0.380378 GATTCAGCGCTCTCGTCTCT 59.620 55.000 7.13 0.00 38.14 3.10
985 3488 2.190578 CATGGGGAGAGGGTTCGC 59.809 66.667 0.00 0.00 0.00 4.70
986 3489 1.689233 TCCATGGGGAGAGGGTTCG 60.689 63.158 13.02 0.00 38.64 3.95
987 3490 1.636769 GGTCCATGGGGAGAGGGTTC 61.637 65.000 13.02 0.00 46.12 3.62
1095 3598 3.025176 GCCAGCGCGTAGATCGAC 61.025 66.667 8.43 0.00 42.86 4.20
1230 3733 2.042843 TCGAAGGAGAGGGAGGGC 60.043 66.667 0.00 0.00 0.00 5.19
1482 3985 2.509336 GTGTCGATGGAGGCGGTG 60.509 66.667 0.00 0.00 0.00 4.94
1734 4237 3.482232 GAGCAGGGCGGCCATGTAT 62.482 63.158 31.36 21.74 37.65 2.29
2229 4732 2.870411 GGTTCGTGCTGTAAGTTCAAGT 59.130 45.455 0.00 0.00 35.30 3.16
2244 4747 2.280592 GGTGCTGAACCGGTTCGT 60.281 61.111 35.42 10.17 42.28 3.85
2277 4780 0.948623 ATTACGAGCTTGTGCGCACA 60.949 50.000 37.86 37.86 45.42 4.57
2305 4808 1.202452 TCAGTGCCATACATCTCAGCG 60.202 52.381 0.00 0.00 0.00 5.18
2351 4854 5.416639 ACAAGCATTACAAATCATGAGCTGA 59.583 36.000 12.51 0.00 38.53 4.26
2365 4868 0.727398 GCCACCGAGACAAGCATTAC 59.273 55.000 0.00 0.00 0.00 1.89
2391 4894 0.948623 CTGACGCAATCAACCGACCA 60.949 55.000 0.00 0.00 36.69 4.02
2392 4895 0.949105 ACTGACGCAATCAACCGACC 60.949 55.000 0.00 0.00 36.69 4.79
2393 4896 0.865769 AACTGACGCAATCAACCGAC 59.134 50.000 0.00 0.00 36.69 4.79
2394 4897 0.865111 CAACTGACGCAATCAACCGA 59.135 50.000 0.00 0.00 36.69 4.69
2395 4898 0.586319 ACAACTGACGCAATCAACCG 59.414 50.000 0.00 0.00 36.69 4.44
2431 4939 2.285977 AGGAAAGACCACGAACAACAC 58.714 47.619 0.00 0.00 42.04 3.32
2437 4945 3.135167 ACCACTAAAGGAAAGACCACGAA 59.865 43.478 0.00 0.00 42.04 3.85
2453 4961 0.601558 GACTGAGCAACCGACCACTA 59.398 55.000 0.00 0.00 0.00 2.74
2528 5036 3.338818 TCTGAGAAAACGCAAAGCTTG 57.661 42.857 0.00 0.00 0.00 4.01
2618 5126 6.988580 TGATATGTTTCTCACTAATCAGGCTG 59.011 38.462 8.58 8.58 0.00 4.85
2620 5128 7.976135 ATGATATGTTTCTCACTAATCAGGC 57.024 36.000 0.00 0.00 31.37 4.85
2691 5200 2.437281 CCTATGCTTCATGGGACTGACT 59.563 50.000 3.44 0.00 43.83 3.41
2692 5201 2.435805 TCCTATGCTTCATGGGACTGAC 59.564 50.000 7.67 0.00 44.56 3.51
2758 5267 3.451141 TGAAAACCAGAAACACCATGC 57.549 42.857 0.00 0.00 0.00 4.06
2837 5346 6.894339 ACAGATAAAATCGTTCCCACTTTT 57.106 33.333 0.00 0.00 0.00 2.27
2929 5438 5.130350 ACTAACAAAGAAGGCTTGCAACTA 58.870 37.500 3.46 0.00 33.79 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.