Multiple sequence alignment - TraesCS6A01G259000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G259000 chr6A 100.000 8750 0 0 1 8750 481736160 481744909 0.000000e+00 16159.0
1 TraesCS6A01G259000 chr6B 93.595 5761 233 62 1 5676 516074231 516079940 0.000000e+00 8469.0
2 TraesCS6A01G259000 chr6B 90.973 1706 84 29 6748 8435 516081030 516082683 0.000000e+00 2233.0
3 TraesCS6A01G259000 chr6B 87.500 360 39 3 5961 6314 516080252 516080611 2.270000e-110 411.0
4 TraesCS6A01G259000 chr6B 88.545 323 30 6 8435 8750 516082710 516083032 1.380000e-102 385.0
5 TraesCS6A01G259000 chr6B 89.844 256 17 3 5712 5967 516079943 516080189 3.940000e-83 320.0
6 TraesCS6A01G259000 chr6B 85.333 225 25 6 6467 6684 516080690 516080913 8.840000e-55 226.0
7 TraesCS6A01G259000 chr6B 100.000 38 0 0 6681 6718 516080994 516081031 4.380000e-08 71.3
8 TraesCS6A01G259000 chr6D 96.046 2605 72 16 183 2771 341644729 341647318 0.000000e+00 4211.0
9 TraesCS6A01G259000 chr6D 90.183 3168 170 51 2771 5861 341647401 341650504 0.000000e+00 3997.0
10 TraesCS6A01G259000 chr6D 90.522 1667 93 31 6429 8064 341651111 341652743 0.000000e+00 2143.0
11 TraesCS6A01G259000 chr6D 92.932 382 17 7 8060 8437 341653143 341653518 1.660000e-151 547.0
12 TraesCS6A01G259000 chr6D 93.125 320 18 4 8434 8750 341653551 341653869 4.780000e-127 466.0
13 TraesCS6A01G259000 chr6D 87.395 357 41 2 5961 6314 341650637 341650992 2.940000e-109 407.0
14 TraesCS6A01G259000 chr6D 93.617 188 11 1 1 187 341637728 341637915 6.690000e-71 279.0
15 TraesCS6A01G259000 chr6D 91.892 74 2 1 5894 5967 341650505 341650574 5.590000e-17 100.0
16 TraesCS6A01G259000 chr5B 89.754 244 24 1 8475 8718 313143079 313143321 2.370000e-80 311.0
17 TraesCS6A01G259000 chr5B 91.146 192 14 3 1000 1188 471852439 471852630 3.130000e-64 257.0
18 TraesCS6A01G259000 chr5A 87.045 247 31 1 8480 8725 364679999 364680245 2.410000e-70 278.0
19 TraesCS6A01G259000 chr5A 91.146 192 14 3 1000 1188 494863147 494863338 3.130000e-64 257.0
20 TraesCS6A01G259000 chr5D 87.137 241 28 3 8480 8718 457659508 457659269 4.030000e-68 270.0
21 TraesCS6A01G259000 chr5D 91.667 192 13 3 1000 1188 391730413 391730604 6.740000e-66 263.0
22 TraesCS6A01G259000 chr7D 91.282 195 14 2 1000 1191 237610172 237610366 6.740000e-66 263.0
23 TraesCS6A01G259000 chr7A 91.282 195 14 2 1000 1191 253427928 253428122 6.740000e-66 263.0
24 TraesCS6A01G259000 chr7B 90.769 195 15 2 1000 1191 215001223 215001417 3.130000e-64 257.0
25 TraesCS6A01G259000 chr7B 87.719 171 21 0 1001 1171 18506211 18506041 5.360000e-47 200.0
26 TraesCS6A01G259000 chr1D 85.833 240 32 2 8481 8719 78966822 78967060 4.050000e-63 254.0
27 TraesCS6A01G259000 chr1B 85.020 247 34 3 8481 8726 123953329 123953573 1.890000e-61 248.0
28 TraesCS6A01G259000 chr3D 85.294 238 34 1 8475 8711 33382440 33382677 2.440000e-60 244.0
29 TraesCS6A01G259000 chr3D 85.169 236 27 8 8480 8711 67054848 67055079 1.470000e-57 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G259000 chr6A 481736160 481744909 8749 False 16159.000000 16159 100.000000 1 8750 1 chr6A.!!$F1 8749
1 TraesCS6A01G259000 chr6B 516074231 516083032 8801 False 1730.757143 8469 90.827143 1 8750 7 chr6B.!!$F1 8749
2 TraesCS6A01G259000 chr6D 341644729 341653869 9140 False 1695.857143 4211 91.727857 183 8750 7 chr6D.!!$F2 8567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 319 0.599558 TACGCGAGGCACAAGTACTT 59.400 50.0 15.93 1.12 0.00 2.24 F
988 997 0.911525 TGCTTGGAAGGAGGAGGAGG 60.912 60.0 0.00 0.00 0.00 4.30 F
1423 1437 1.557099 CTACTATAGGGGCATGGCGA 58.443 55.0 13.76 1.13 0.00 5.54 F
2322 2343 1.542492 ACTGCTCCTGGAAATTGCTG 58.458 50.0 9.86 9.86 0.00 4.41 F
3473 3631 1.016627 GAAGTGCCATATGCGAGCAA 58.983 50.0 0.57 0.00 45.60 3.91 F
4643 4827 0.413037 TTTCCCCCATGGCATGTCTT 59.587 50.0 24.80 0.00 0.00 3.01 F
5192 5384 0.178873 ACTTGCTTGGGGAGGACCTA 60.179 55.0 0.00 0.00 40.03 3.08 F
5728 5966 0.322322 ACGTTTACATCGCCCCTGAA 59.678 50.0 0.00 0.00 0.00 3.02 F
6936 7371 0.248289 GGCGAGCCCTTACTTGTACA 59.752 55.0 1.97 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1134 1146 0.315251 CGCGGCTGGAGAAGATGATA 59.685 55.000 0.00 0.00 0.00 2.15 R
2092 2107 0.396435 TGAACTTCACACGGCCAGAT 59.604 50.000 2.24 0.00 0.00 2.90 R
2660 2686 2.543653 CCACCGGAACAAAGAAGCAAAG 60.544 50.000 9.46 0.00 0.00 2.77 R
4083 4248 0.040058 AATGTCCAATGCCTCAGCCA 59.960 50.000 0.00 0.00 38.69 4.75 R
4652 4836 0.249398 AGGTTCAAATACGCGAGCCT 59.751 50.000 15.93 2.22 37.96 4.58 R
5625 5832 0.036765 GCCACTGAACCGTACCATCA 60.037 55.000 0.00 0.00 0.00 3.07 R
6539 6884 0.322187 ATTCCCAAGCACCACGGTAC 60.322 55.000 0.00 0.00 0.00 3.34 R
6990 7425 0.322816 ACGGCAATGCAAGTCATCCT 60.323 50.000 7.79 0.00 33.40 3.24 R
8070 8555 1.134788 GTCCCATGCGCAAGTACTACT 60.135 52.381 17.11 0.00 41.68 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.178313 TCAGTCATACGTATTCATAGTTGGAT 57.822 34.615 5.03 0.00 0.00 3.41
36 37 8.142994 ACGTATTCATAGTTGGATCAACATTC 57.857 34.615 12.46 0.00 45.66 2.67
52 53 5.049060 TCAACATTCACCATTTGTAAGACGG 60.049 40.000 0.00 0.00 0.00 4.79
73 74 8.206867 AGACGGAATCAGATAAATCAATTGAGA 58.793 33.333 14.54 4.11 0.00 3.27
118 119 9.202273 GGACAGCAGTAGAAGATATCTAAATTG 57.798 37.037 5.46 3.28 42.24 2.32
145 146 6.870971 AGTACTAGCAGTATCTAAGAGCAC 57.129 41.667 0.00 0.00 32.65 4.40
147 148 7.001674 AGTACTAGCAGTATCTAAGAGCACAT 58.998 38.462 0.00 0.00 32.65 3.21
157 158 4.136796 TCTAAGAGCACATGCACAACTTT 58.863 39.130 6.64 0.00 45.16 2.66
158 159 2.787601 AGAGCACATGCACAACTTTG 57.212 45.000 6.64 0.00 45.16 2.77
311 319 0.599558 TACGCGAGGCACAAGTACTT 59.400 50.000 15.93 1.12 0.00 2.24
321 330 3.131400 GGCACAAGTACTTCTAGCTAGCT 59.869 47.826 23.12 23.12 0.00 3.32
322 331 4.338682 GGCACAAGTACTTCTAGCTAGCTA 59.661 45.833 22.85 22.85 0.00 3.32
323 332 5.506649 GGCACAAGTACTTCTAGCTAGCTAG 60.507 48.000 36.20 36.20 45.38 3.42
491 500 3.245371 TGGTTCGGGTTAAGTCTAGGAGA 60.245 47.826 0.00 0.00 0.00 3.71
505 514 1.602888 GGAGAGGCGGCGTAGGATA 60.603 63.158 9.37 0.00 0.00 2.59
586 595 1.262151 GACGTGTGTATTTGTGGCGTT 59.738 47.619 0.00 0.00 0.00 4.84
955 964 1.472376 GCTGATCGGTAGAGCTTTGCT 60.472 52.381 2.89 0.00 43.88 3.91
956 965 2.898705 CTGATCGGTAGAGCTTTGCTT 58.101 47.619 0.00 0.00 39.88 3.91
957 966 2.606725 CTGATCGGTAGAGCTTTGCTTG 59.393 50.000 0.00 0.00 39.88 4.01
958 967 2.233676 TGATCGGTAGAGCTTTGCTTGA 59.766 45.455 0.00 0.00 39.88 3.02
959 968 3.118629 TGATCGGTAGAGCTTTGCTTGAT 60.119 43.478 0.00 0.00 39.88 2.57
962 971 4.072131 TCGGTAGAGCTTTGCTTGATTTT 58.928 39.130 0.00 0.00 39.88 1.82
986 995 0.987294 CTTGCTTGGAAGGAGGAGGA 59.013 55.000 0.00 0.00 0.00 3.71
987 996 0.987294 TTGCTTGGAAGGAGGAGGAG 59.013 55.000 0.00 0.00 0.00 3.69
988 997 0.911525 TGCTTGGAAGGAGGAGGAGG 60.912 60.000 0.00 0.00 0.00 4.30
1298 1311 5.779529 TTGCTTCTTTTCTGATGCTTTCT 57.220 34.783 0.00 0.00 37.79 2.52
1423 1437 1.557099 CTACTATAGGGGCATGGCGA 58.443 55.000 13.76 1.13 0.00 5.54
1679 1693 2.099405 TCTTTCCATTTTGATCCGGGC 58.901 47.619 0.00 0.00 0.00 6.13
1804 1818 3.356290 AGTTGGTTGCTTGTTCTTCACT 58.644 40.909 0.00 0.00 0.00 3.41
1812 1826 2.874701 GCTTGTTCTTCACTCTTCTGCA 59.125 45.455 0.00 0.00 0.00 4.41
1845 1859 3.551454 CCATCCGATTTCATGCCATGTTC 60.551 47.826 4.31 0.43 0.00 3.18
1851 1865 2.885135 TTCATGCCATGTTCCTCACT 57.115 45.000 4.31 0.00 0.00 3.41
2045 2060 5.245301 TCAATCTCCTTTCGTTGTCTCCTTA 59.755 40.000 0.00 0.00 0.00 2.69
2092 2107 5.762179 AGGTTCTCTTCATGTATCCACAA 57.238 39.130 0.00 0.00 38.42 3.33
2099 2114 3.213206 TCATGTATCCACAATCTGGCC 57.787 47.619 0.00 0.00 40.39 5.36
2100 2115 1.875514 CATGTATCCACAATCTGGCCG 59.124 52.381 0.00 0.00 40.39 6.13
2132 2147 6.072112 TCAAGCAAAAGTAACTTCACCATC 57.928 37.500 0.00 0.00 0.00 3.51
2209 2230 2.104111 AGTGTGGTCAAAAGATGTCGGA 59.896 45.455 0.00 0.00 0.00 4.55
2229 2250 3.737774 GGAAGACAGTGCATTTTGCTTTC 59.262 43.478 0.00 0.00 45.31 2.62
2268 2289 5.761726 CCTCATTTTATGCTGATGAGTGCTA 59.238 40.000 10.58 0.00 43.22 3.49
2322 2343 1.542492 ACTGCTCCTGGAAATTGCTG 58.458 50.000 9.86 9.86 0.00 4.41
2344 2365 5.575157 TGGCTCTCCCATGTTATTTTTGTA 58.425 37.500 0.00 0.00 39.18 2.41
2397 2418 6.169557 TCTAGTTTCTGTTTGCCTGTTCTA 57.830 37.500 0.00 0.00 0.00 2.10
2406 2427 5.113383 TGTTTGCCTGTTCTATATGTACCG 58.887 41.667 0.00 0.00 0.00 4.02
2415 2436 6.270815 TGTTCTATATGTACCGAAGCAGTTC 58.729 40.000 0.00 0.00 0.00 3.01
2425 2446 5.464965 ACCGAAGCAGTTCATTTATTACG 57.535 39.130 0.00 0.00 32.36 3.18
2517 2539 9.678941 TTTCATTTGCGTATTTGTATTGTGTAA 57.321 25.926 0.00 0.00 0.00 2.41
2566 2592 8.752005 AGCATCTTATTTTTATCTAGTGCCAA 57.248 30.769 0.00 0.00 0.00 4.52
2579 2605 9.555727 TTATCTAGTGCCAACTAATTAATCCAC 57.444 33.333 0.00 0.00 38.43 4.02
2687 2713 2.294074 TCTTTGTTCCGGTGGTTCTTG 58.706 47.619 0.00 0.00 0.00 3.02
2711 2737 2.731572 AGGAGCATTCACCTTTGGATG 58.268 47.619 0.00 0.00 41.31 3.51
2777 2895 2.093500 TGGCTGGTATGTCTTAGTGCAG 60.093 50.000 0.00 0.00 0.00 4.41
3010 3132 9.378551 GTGTGTTAACTGATATTTAGGATGTCA 57.621 33.333 7.22 0.00 0.00 3.58
3105 3227 6.198650 TCATGTGCTTAGACCATCAAATTG 57.801 37.500 0.00 0.00 0.00 2.32
3151 3273 5.975988 ATTAGGGTGGCTTCATTTCTAGA 57.024 39.130 0.00 0.00 0.00 2.43
3171 3294 7.935520 TCTAGAGCTCTGTGTTAACTGATATG 58.064 38.462 26.78 0.00 34.21 1.78
3176 3299 5.294552 GCTCTGTGTTAACTGATATGTTCCC 59.705 44.000 7.22 0.00 34.21 3.97
3286 3421 7.513371 TTTACGAAATCCATGTTGGTTAACT 57.487 32.000 5.42 0.00 39.03 2.24
3328 3463 9.814899 AACATTTATTTTTCTCATGTGACACAA 57.185 25.926 13.23 0.00 0.00 3.33
3329 3464 9.814899 ACATTTATTTTTCTCATGTGACACAAA 57.185 25.926 13.23 3.12 0.00 2.83
3473 3631 1.016627 GAAGTGCCATATGCGAGCAA 58.983 50.000 0.57 0.00 45.60 3.91
3552 3716 7.935338 ACTTGCAAAACATATGAAAACTGAG 57.065 32.000 10.38 2.69 0.00 3.35
3594 3758 9.994432 CTTGAGCCATATCTAGTTAACAAAAAG 57.006 33.333 8.61 0.00 0.00 2.27
3664 3829 7.166851 ACCTATTGGAATCAAGATGCTCTATG 58.833 38.462 0.00 0.00 36.19 2.23
3672 3837 3.254411 TCAAGATGCTCTATGCTCTACCG 59.746 47.826 0.00 0.00 43.37 4.02
3739 3904 7.860373 TCAAAGTATCAACGTTTGAAATTCCAG 59.140 33.333 0.00 0.00 43.95 3.86
4082 4247 6.332735 AGAATTTTCTTTTAGACCACCAGC 57.667 37.500 0.00 0.00 32.55 4.85
4083 4248 6.071320 AGAATTTTCTTTTAGACCACCAGCT 58.929 36.000 0.00 0.00 32.55 4.24
4093 4258 4.340246 CACCAGCTGGCTGAGGCA 62.340 66.667 33.06 8.86 46.30 4.75
4118 4283 7.403312 TTGGACATTACTTATTTGGTCATGG 57.597 36.000 0.00 0.00 0.00 3.66
4220 4398 9.052759 ACTTAACGAAGTGAGAAACAATAACAT 57.947 29.630 0.00 0.00 45.00 2.71
4278 4459 3.713826 TGGTGGTCCCTTATCTTGAAC 57.286 47.619 0.00 0.00 0.00 3.18
4595 4779 8.884323 TGAGAATGAATAGCCTTACCATATCTT 58.116 33.333 0.00 0.00 0.00 2.40
4626 4810 9.965902 ACTATGTCCTTCTGTTCTATCATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
4643 4827 0.413037 TTTCCCCCATGGCATGTCTT 59.587 50.000 24.80 0.00 0.00 3.01
4649 4833 2.354003 CCCCATGGCATGTCTTGAAAAC 60.354 50.000 24.80 0.00 0.00 2.43
4652 4836 4.220382 CCCATGGCATGTCTTGAAAACTAA 59.780 41.667 24.80 0.00 0.00 2.24
4657 4841 4.379918 GGCATGTCTTGAAAACTAAGGCTC 60.380 45.833 0.00 0.00 31.27 4.70
4658 4842 4.670221 GCATGTCTTGAAAACTAAGGCTCG 60.670 45.833 0.00 0.00 31.27 5.03
4660 4844 2.066262 TCTTGAAAACTAAGGCTCGCG 58.934 47.619 0.00 0.00 0.00 5.87
4681 4865 6.201425 TCGCGTATTTGAACCTTAATACCATC 59.799 38.462 5.77 0.00 35.01 3.51
4710 4894 5.300792 TGTTATGCTCATCAATCATGCATGT 59.699 36.000 25.43 10.91 43.13 3.21
4812 4999 5.206587 AGCTCTTGGATTCATTATTTGCCT 58.793 37.500 0.00 0.00 0.00 4.75
5000 5192 4.760530 TGGCTGTATATTTCTGCTCTGT 57.239 40.909 8.47 0.00 0.00 3.41
5090 5282 3.445450 CACTTCTAGGCTCTAGCTTCACA 59.555 47.826 0.00 0.00 41.70 3.58
5104 5296 4.505808 AGCTTCACATCTCATTCACAGAG 58.494 43.478 0.00 0.00 34.42 3.35
5105 5297 3.063725 GCTTCACATCTCATTCACAGAGC 59.936 47.826 0.00 0.00 33.15 4.09
5155 5347 9.884465 GATATTTGGATTACATACTCTTTGTGC 57.116 33.333 0.00 0.00 0.00 4.57
5192 5384 0.178873 ACTTGCTTGGGGAGGACCTA 60.179 55.000 0.00 0.00 40.03 3.08
5328 5522 0.819582 ATATGCACCAACTGGCTTGC 59.180 50.000 4.74 4.74 37.61 4.01
5344 5538 4.467082 TGGCTTGCCAATTAATGAAGTCAT 59.533 37.500 12.40 0.00 38.41 3.06
5383 5577 1.747355 CACTGGGATCACAATTGAGGC 59.253 52.381 13.59 0.41 34.35 4.70
5389 5583 2.627945 GATCACAATTGAGGCGTACCA 58.372 47.619 13.59 0.00 39.06 3.25
5393 5587 3.055747 TCACAATTGAGGCGTACCATACA 60.056 43.478 13.59 0.00 39.06 2.29
5428 5633 7.256691 GGAATATGGGTACAGAATGACTACCAT 60.257 40.741 0.00 0.00 38.94 3.55
5429 5634 8.736097 AATATGGGTACAGAATGACTACCATA 57.264 34.615 0.00 0.00 38.94 2.74
5549 5755 9.919416 TTCATCTATTCATTGGGATGTAAAAGA 57.081 29.630 0.00 0.00 37.44 2.52
5615 5822 4.398319 ACCTGACGATTCAAATCCACTTT 58.602 39.130 0.00 0.00 31.68 2.66
5622 5829 5.219633 CGATTCAAATCCACTTTCGGTTTT 58.780 37.500 0.00 0.00 31.68 2.43
5624 5831 6.129194 CGATTCAAATCCACTTTCGGTTTTTC 60.129 38.462 0.00 0.00 31.68 2.29
5625 5832 5.845391 TCAAATCCACTTTCGGTTTTTCT 57.155 34.783 0.00 0.00 0.00 2.52
5626 5833 5.587289 TCAAATCCACTTTCGGTTTTTCTG 58.413 37.500 0.00 0.00 0.00 3.02
5627 5834 5.358442 TCAAATCCACTTTCGGTTTTTCTGA 59.642 36.000 0.00 0.00 0.00 3.27
5628 5835 6.040391 TCAAATCCACTTTCGGTTTTTCTGAT 59.960 34.615 0.00 0.00 0.00 2.90
5629 5836 4.829064 TCCACTTTCGGTTTTTCTGATG 57.171 40.909 0.00 0.00 0.00 3.07
5630 5837 3.568007 TCCACTTTCGGTTTTTCTGATGG 59.432 43.478 0.00 0.00 32.97 3.51
5632 5839 4.517453 CCACTTTCGGTTTTTCTGATGGTA 59.483 41.667 0.00 0.00 29.27 3.25
5633 5840 5.449304 CACTTTCGGTTTTTCTGATGGTAC 58.551 41.667 0.00 0.00 0.00 3.34
5654 5861 3.074412 CGGTTCAGTGGCTCTAAACAAT 58.926 45.455 5.07 0.00 0.00 2.71
5659 5866 6.151144 GGTTCAGTGGCTCTAAACAATGTAAT 59.849 38.462 5.07 0.00 34.60 1.89
5683 5890 9.785982 AATAAATTAGTAGCAGATCTCCTTTCC 57.214 33.333 0.00 0.00 0.00 3.13
5684 5891 7.444703 AAATTAGTAGCAGATCTCCTTTCCT 57.555 36.000 0.00 0.00 0.00 3.36
5685 5892 5.860941 TTAGTAGCAGATCTCCTTTCCTG 57.139 43.478 0.00 0.00 0.00 3.86
5688 5895 1.666054 GCAGATCTCCTTTCCTGCTG 58.334 55.000 0.00 0.00 46.04 4.41
5689 5896 1.065564 GCAGATCTCCTTTCCTGCTGT 60.066 52.381 0.00 0.00 46.04 4.40
5690 5897 2.617532 GCAGATCTCCTTTCCTGCTGTT 60.618 50.000 0.00 0.00 46.04 3.16
5691 5898 3.683802 CAGATCTCCTTTCCTGCTGTTT 58.316 45.455 0.00 0.00 0.00 2.83
5692 5899 4.077822 CAGATCTCCTTTCCTGCTGTTTT 58.922 43.478 0.00 0.00 0.00 2.43
5693 5900 4.155644 CAGATCTCCTTTCCTGCTGTTTTC 59.844 45.833 0.00 0.00 0.00 2.29
5694 5901 3.864789 TCTCCTTTCCTGCTGTTTTCT 57.135 42.857 0.00 0.00 0.00 2.52
5695 5902 4.170468 TCTCCTTTCCTGCTGTTTTCTT 57.830 40.909 0.00 0.00 0.00 2.52
5696 5903 4.536765 TCTCCTTTCCTGCTGTTTTCTTT 58.463 39.130 0.00 0.00 0.00 2.52
5697 5904 4.956075 TCTCCTTTCCTGCTGTTTTCTTTT 59.044 37.500 0.00 0.00 0.00 2.27
5698 5905 6.126409 TCTCCTTTCCTGCTGTTTTCTTTTA 58.874 36.000 0.00 0.00 0.00 1.52
5699 5906 6.263168 TCTCCTTTCCTGCTGTTTTCTTTTAG 59.737 38.462 0.00 0.00 0.00 1.85
5700 5907 6.126409 TCCTTTCCTGCTGTTTTCTTTTAGA 58.874 36.000 0.00 0.00 0.00 2.10
5701 5908 6.605594 TCCTTTCCTGCTGTTTTCTTTTAGAA 59.394 34.615 0.00 0.00 31.28 2.10
5702 5909 7.123547 TCCTTTCCTGCTGTTTTCTTTTAGAAA 59.876 33.333 0.00 0.00 42.00 2.52
5703 5910 7.928167 CCTTTCCTGCTGTTTTCTTTTAGAAAT 59.072 33.333 2.97 0.00 43.06 2.17
5704 5911 9.965824 CTTTCCTGCTGTTTTCTTTTAGAAATA 57.034 29.630 2.97 0.00 43.06 1.40
5705 5912 9.965824 TTTCCTGCTGTTTTCTTTTAGAAATAG 57.034 29.630 2.97 6.26 43.06 1.73
5706 5913 8.918202 TCCTGCTGTTTTCTTTTAGAAATAGA 57.082 30.769 13.55 0.00 43.06 1.98
5707 5914 9.349713 TCCTGCTGTTTTCTTTTAGAAATAGAA 57.650 29.630 13.55 0.00 43.06 2.10
5708 5915 9.965824 CCTGCTGTTTTCTTTTAGAAATAGAAA 57.034 29.630 13.55 5.18 43.06 2.52
5728 5966 0.322322 ACGTTTACATCGCCCCTGAA 59.678 50.000 0.00 0.00 0.00 3.02
5733 5971 2.871096 TACATCGCCCCTGAAGTTTT 57.129 45.000 0.00 0.00 0.00 2.43
5801 6039 9.890629 ATCTTAGAGCAAATACAACATGTTAGA 57.109 29.630 11.53 6.07 0.00 2.10
5802 6040 9.890629 TCTTAGAGCAAATACAACATGTTAGAT 57.109 29.630 11.53 4.68 0.00 1.98
5831 6069 0.744281 CGAAACCACCCTGCAAAACT 59.256 50.000 0.00 0.00 0.00 2.66
5862 6100 6.402334 CGGTGCTCGGTTTACAAACATTAATA 60.402 38.462 7.12 0.00 40.63 0.98
5892 6130 6.344232 AGGGAGTTACCTAGTCTAGTTCAT 57.656 41.667 6.15 0.00 39.65 2.57
5922 6160 5.449553 AGGGATGATATGGACCTTTTCAAC 58.550 41.667 4.92 3.01 0.00 3.18
5935 6173 6.238676 GGACCTTTTCAACTGAAAGAGGTAAC 60.239 42.308 23.86 19.25 45.01 2.50
5936 6174 6.184789 ACCTTTTCAACTGAAAGAGGTAACA 58.815 36.000 23.21 4.16 44.24 2.41
5937 6175 6.833933 ACCTTTTCAACTGAAAGAGGTAACAT 59.166 34.615 23.21 9.92 44.24 2.71
5938 6176 7.141363 CCTTTTCAACTGAAAGAGGTAACATG 58.859 38.462 16.88 0.00 43.90 3.21
5986 6293 9.119329 GATTACTAATCACTTGTATGAGTAGCG 57.881 37.037 9.48 0.00 46.40 4.26
5997 6304 7.967303 ACTTGTATGAGTAGCGTTTTAGAGTAC 59.033 37.037 0.00 0.00 0.00 2.73
5998 6305 7.621428 TGTATGAGTAGCGTTTTAGAGTACT 57.379 36.000 0.00 0.00 0.00 2.73
6010 6317 7.254795 GCGTTTTAGAGTACTAATTCATGCCAT 60.255 37.037 0.00 0.00 38.23 4.40
6012 6319 7.496529 TTTAGAGTACTAATTCATGCCATGC 57.503 36.000 0.00 0.00 38.23 4.06
6015 6322 6.066690 AGAGTACTAATTCATGCCATGCAAT 58.933 36.000 0.00 0.00 43.62 3.56
6017 6324 6.066690 AGTACTAATTCATGCCATGCAATCT 58.933 36.000 0.00 0.00 43.62 2.40
6071 6378 7.156876 TCAATTTGTAGCCACCTAAGAAATG 57.843 36.000 0.00 0.00 0.00 2.32
6145 6458 3.837213 AGGTTGCAAATCATTGAGTCG 57.163 42.857 0.00 0.00 38.94 4.18
6150 6463 1.062587 GCAAATCATTGAGTCGACGGG 59.937 52.381 10.46 0.00 38.94 5.28
6160 6473 2.100631 GTCGACGGGTCTGCAATGG 61.101 63.158 0.00 0.00 0.00 3.16
6305 6618 7.490962 ACAAACATTCAAGATTGTCGACTTA 57.509 32.000 17.92 5.22 29.91 2.24
6306 6619 7.576236 ACAAACATTCAAGATTGTCGACTTAG 58.424 34.615 17.92 1.17 29.91 2.18
6307 6620 7.441157 ACAAACATTCAAGATTGTCGACTTAGA 59.559 33.333 17.92 3.58 29.91 2.10
6308 6621 7.962964 AACATTCAAGATTGTCGACTTAGAA 57.037 32.000 17.92 11.93 0.00 2.10
6309 6622 7.962964 ACATTCAAGATTGTCGACTTAGAAA 57.037 32.000 17.92 2.08 0.00 2.52
6310 6623 8.553459 ACATTCAAGATTGTCGACTTAGAAAT 57.447 30.769 17.92 7.45 0.00 2.17
6311 6624 8.446273 ACATTCAAGATTGTCGACTTAGAAATG 58.554 33.333 17.92 17.37 32.50 2.32
6312 6625 8.659491 CATTCAAGATTGTCGACTTAGAAATGA 58.341 33.333 17.92 9.56 30.44 2.57
6313 6626 7.582435 TCAAGATTGTCGACTTAGAAATGAC 57.418 36.000 17.92 0.00 0.00 3.06
6314 6627 6.590292 TCAAGATTGTCGACTTAGAAATGACC 59.410 38.462 17.92 0.00 0.00 4.02
6315 6628 6.037786 AGATTGTCGACTTAGAAATGACCA 57.962 37.500 17.92 0.00 0.00 4.02
6316 6629 6.464222 AGATTGTCGACTTAGAAATGACCAA 58.536 36.000 17.92 0.00 0.00 3.67
6317 6630 7.106239 AGATTGTCGACTTAGAAATGACCAAT 58.894 34.615 17.92 2.96 0.00 3.16
6318 6631 6.721571 TTGTCGACTTAGAAATGACCAATC 57.278 37.500 17.92 0.00 0.00 2.67
6319 6632 5.789521 TGTCGACTTAGAAATGACCAATCA 58.210 37.500 17.92 0.00 39.83 2.57
6320 6633 6.227522 TGTCGACTTAGAAATGACCAATCAA 58.772 36.000 17.92 0.00 38.69 2.57
6321 6634 6.368791 TGTCGACTTAGAAATGACCAATCAAG 59.631 38.462 17.92 0.00 38.69 3.02
6322 6635 6.590292 GTCGACTTAGAAATGACCAATCAAGA 59.410 38.462 8.70 0.00 38.69 3.02
6323 6636 7.278868 GTCGACTTAGAAATGACCAATCAAGAT 59.721 37.037 8.70 0.00 38.69 2.40
6324 6637 7.824289 TCGACTTAGAAATGACCAATCAAGATT 59.176 33.333 0.00 0.00 38.69 2.40
6325 6638 7.907045 CGACTTAGAAATGACCAATCAAGATTG 59.093 37.037 14.34 14.34 45.77 2.67
6326 6639 8.641498 ACTTAGAAATGACCAATCAAGATTGT 57.359 30.769 18.47 9.03 44.97 2.71
6327 6640 8.734386 ACTTAGAAATGACCAATCAAGATTGTC 58.266 33.333 18.47 15.69 44.97 3.18
6328 6641 6.187125 AGAAATGACCAATCAAGATTGTCG 57.813 37.500 18.47 9.03 44.97 4.35
6329 6642 5.939883 AGAAATGACCAATCAAGATTGTCGA 59.060 36.000 18.47 5.13 44.97 4.20
6330 6643 5.551760 AATGACCAATCAAGATTGTCGAC 57.448 39.130 18.47 9.11 44.97 4.20
6331 6644 3.334691 TGACCAATCAAGATTGTCGACC 58.665 45.455 14.12 0.00 44.97 4.79
6332 6645 3.007940 TGACCAATCAAGATTGTCGACCT 59.992 43.478 14.12 0.00 44.97 3.85
6345 6658 5.970317 TTGTCGACCTAGAAATGACTACA 57.030 39.130 14.12 0.00 0.00 2.74
6356 6669 5.109903 AGAAATGACTACATGTTAGTCGCC 58.890 41.667 20.67 13.63 45.05 5.54
6367 6680 5.105310 ACATGTTAGTCGCCTGAGAAATAGT 60.105 40.000 0.00 0.00 0.00 2.12
6374 6687 1.869767 GCCTGAGAAATAGTCATGCCG 59.130 52.381 0.00 0.00 31.48 5.69
6377 6690 4.384056 CCTGAGAAATAGTCATGCCGAAT 58.616 43.478 0.00 0.00 0.00 3.34
6380 6693 6.483307 CCTGAGAAATAGTCATGCCGAATTAA 59.517 38.462 0.00 0.00 0.00 1.40
6439 6783 5.646360 ACATGAACGGTATAAAAGGGAACTG 59.354 40.000 0.00 0.00 42.68 3.16
6445 6789 2.231716 ATAAAAGGGAACTGGTGCCC 57.768 50.000 8.75 8.75 42.68 5.36
6490 6835 8.545420 CATGCAAGATTGGCTACATTATTTTTC 58.455 33.333 0.00 0.00 0.00 2.29
6491 6836 7.609960 TGCAAGATTGGCTACATTATTTTTCA 58.390 30.769 0.00 0.00 0.00 2.69
6531 6876 8.961092 CGAATTTCCAATAGTTTATGCATGAAG 58.039 33.333 10.16 0.00 0.00 3.02
6549 6894 3.562141 TGAAGTTTTCATGTACCGTGGTG 59.438 43.478 0.72 0.00 34.08 4.17
6551 6896 1.877443 GTTTTCATGTACCGTGGTGCT 59.123 47.619 8.60 0.00 0.00 4.40
6577 6928 6.487668 TGGGAATACATCATTCTAAGCACATG 59.512 38.462 0.00 0.00 42.42 3.21
6596 6947 5.285798 CATGATGTTCATGCGCACATATA 57.714 39.130 14.90 4.95 46.37 0.86
6598 6949 5.285798 TGATGTTCATGCGCACATATATG 57.714 39.130 14.90 11.29 33.62 1.78
6783 7218 3.616219 TCCCGTCAAAATGAAGTATGGG 58.384 45.455 0.00 0.00 35.40 4.00
6890 7325 1.376037 GCAGGTGGAGGAACTTCGG 60.376 63.158 0.00 0.00 41.55 4.30
6935 7370 3.061093 GGCGAGCCCTTACTTGTAC 57.939 57.895 1.97 0.00 0.00 2.90
6936 7371 0.248289 GGCGAGCCCTTACTTGTACA 59.752 55.000 1.97 0.00 0.00 2.90
6937 7372 1.134491 GGCGAGCCCTTACTTGTACAT 60.134 52.381 1.97 0.00 0.00 2.29
6938 7373 1.933853 GCGAGCCCTTACTTGTACATG 59.066 52.381 7.18 7.18 0.00 3.21
6939 7374 2.677037 GCGAGCCCTTACTTGTACATGT 60.677 50.000 17.45 17.45 0.00 3.21
6940 7375 3.596214 CGAGCCCTTACTTGTACATGTT 58.404 45.455 18.38 0.87 0.00 2.71
6951 7386 4.457603 ACTTGTACATGTTTGTGTGTGTGT 59.542 37.500 2.30 0.00 36.53 3.72
6953 7388 2.276472 ACATGTTTGTGTGTGTGTGC 57.724 45.000 0.00 0.00 33.85 4.57
6955 7390 0.525242 ATGTTTGTGTGTGTGTGCGC 60.525 50.000 0.00 0.00 0.00 6.09
6956 7391 1.136565 GTTTGTGTGTGTGTGCGCT 59.863 52.632 9.73 0.00 0.00 5.92
6957 7392 0.375454 GTTTGTGTGTGTGTGCGCTA 59.625 50.000 9.73 0.00 0.00 4.26
6958 7393 0.375454 TTTGTGTGTGTGTGCGCTAC 59.625 50.000 9.73 8.79 0.00 3.58
6982 7417 4.223659 GCTAGTTATCTACTGCTTCGCTC 58.776 47.826 0.00 0.00 37.73 5.03
6983 7418 4.023536 GCTAGTTATCTACTGCTTCGCTCT 60.024 45.833 0.00 0.00 37.73 4.09
6985 7420 4.927422 AGTTATCTACTGCTTCGCTCTTC 58.073 43.478 0.00 0.00 35.19 2.87
6986 7421 4.642885 AGTTATCTACTGCTTCGCTCTTCT 59.357 41.667 0.00 0.00 35.19 2.85
6987 7422 5.823570 AGTTATCTACTGCTTCGCTCTTCTA 59.176 40.000 0.00 0.00 35.19 2.10
6988 7423 4.561735 ATCTACTGCTTCGCTCTTCTAC 57.438 45.455 0.00 0.00 0.00 2.59
6989 7424 3.611970 TCTACTGCTTCGCTCTTCTACT 58.388 45.455 0.00 0.00 0.00 2.57
6990 7425 4.767478 TCTACTGCTTCGCTCTTCTACTA 58.233 43.478 0.00 0.00 0.00 1.82
6991 7426 4.812091 TCTACTGCTTCGCTCTTCTACTAG 59.188 45.833 0.00 0.00 0.00 2.57
6992 7427 2.685897 ACTGCTTCGCTCTTCTACTAGG 59.314 50.000 0.00 0.00 0.00 3.02
7003 7438 5.221422 GCTCTTCTACTAGGATGACTTGCAT 60.221 44.000 0.00 0.00 40.77 3.96
7012 7447 0.734889 ATGACTTGCATTGCCGTAGC 59.265 50.000 6.12 0.00 40.48 3.58
7025 7460 3.000041 TGCCGTAGCTTTGTCAATGTAG 59.000 45.455 0.00 0.00 40.80 2.74
7083 7518 0.744414 GCAGAGCCTTTGACCGCATA 60.744 55.000 0.00 0.00 0.00 3.14
7084 7519 1.959042 CAGAGCCTTTGACCGCATAT 58.041 50.000 0.00 0.00 0.00 1.78
7085 7520 1.869767 CAGAGCCTTTGACCGCATATC 59.130 52.381 0.00 0.00 0.00 1.63
7086 7521 1.765314 AGAGCCTTTGACCGCATATCT 59.235 47.619 0.00 0.00 0.00 1.98
7087 7522 2.965831 AGAGCCTTTGACCGCATATCTA 59.034 45.455 0.00 0.00 0.00 1.98
7094 7529 6.398095 CCTTTGACCGCATATCTATGTATGA 58.602 40.000 0.00 0.00 34.67 2.15
7153 7589 1.742761 ATTGCACCCGAGAATCAGTG 58.257 50.000 0.00 0.00 40.78 3.66
7171 7607 9.559958 GAATCAGTGGATTTTTGTAACATACAG 57.440 33.333 0.00 0.00 43.69 2.74
7172 7608 8.862325 ATCAGTGGATTTTTGTAACATACAGA 57.138 30.769 0.00 0.00 40.24 3.41
7173 7609 8.322906 TCAGTGGATTTTTGTAACATACAGAG 57.677 34.615 0.00 0.00 40.24 3.35
7174 7610 7.390440 TCAGTGGATTTTTGTAACATACAGAGG 59.610 37.037 0.00 0.00 40.24 3.69
7175 7611 7.390440 CAGTGGATTTTTGTAACATACAGAGGA 59.610 37.037 0.00 0.00 40.24 3.71
7176 7612 7.942341 AGTGGATTTTTGTAACATACAGAGGAA 59.058 33.333 0.00 0.00 40.24 3.36
7177 7613 8.021396 GTGGATTTTTGTAACATACAGAGGAAC 58.979 37.037 0.00 0.00 40.24 3.62
7178 7614 7.942341 TGGATTTTTGTAACATACAGAGGAACT 59.058 33.333 0.00 0.00 40.24 3.01
7179 7615 8.793592 GGATTTTTGTAACATACAGAGGAACTT 58.206 33.333 0.00 0.00 40.24 2.66
7183 7619 8.611654 TTTGTAACATACAGAGGAACTTTACC 57.388 34.615 0.00 0.00 40.24 2.85
7184 7620 7.305813 TGTAACATACAGAGGAACTTTACCA 57.694 36.000 0.00 0.00 33.27 3.25
7192 7628 6.597562 ACAGAGGAACTTTACCAACATACAA 58.402 36.000 0.00 0.00 41.55 2.41
7200 7636 5.182380 ACTTTACCAACATACAATTCACCGG 59.818 40.000 0.00 0.00 0.00 5.28
7211 7688 3.009723 CAATTCACCGGATGTACTTGCT 58.990 45.455 9.46 0.00 0.00 3.91
7313 7790 3.814842 TCCTATTTGAACTGCACACACAG 59.185 43.478 0.00 0.00 43.59 3.66
7324 7804 2.935849 TGCACACACAGAACACTAACTG 59.064 45.455 0.00 0.00 39.65 3.16
7356 7836 8.495148 GCATTTGTATTCCTTTTTAACTGTTGG 58.505 33.333 2.69 0.00 0.00 3.77
7357 7837 8.495148 CATTTGTATTCCTTTTTAACTGTTGGC 58.505 33.333 2.69 0.00 0.00 4.52
7360 7840 7.787028 TGTATTCCTTTTTAACTGTTGGCTTT 58.213 30.769 2.69 0.00 0.00 3.51
7361 7841 7.708752 TGTATTCCTTTTTAACTGTTGGCTTTG 59.291 33.333 2.69 0.00 0.00 2.77
7362 7842 4.438148 TCCTTTTTAACTGTTGGCTTTGC 58.562 39.130 2.69 0.00 0.00 3.68
7363 7843 4.161377 TCCTTTTTAACTGTTGGCTTTGCT 59.839 37.500 2.69 0.00 0.00 3.91
7364 7844 5.361285 TCCTTTTTAACTGTTGGCTTTGCTA 59.639 36.000 2.69 0.00 0.00 3.49
7368 7848 3.715628 AACTGTTGGCTTTGCTACTTG 57.284 42.857 0.00 0.00 0.00 3.16
7594 8077 1.065199 TGCATCCACCTGTTCCATCTC 60.065 52.381 0.00 0.00 0.00 2.75
7620 8105 5.239359 TGCATGCAACTGAACTGATTATC 57.761 39.130 20.30 0.00 0.00 1.75
7738 8223 0.537653 GGGTGGGTTCTCTGAGCTAC 59.462 60.000 0.00 0.73 0.00 3.58
7812 8297 2.146073 AAAATGCGTGTGCTGCTCCC 62.146 55.000 0.00 0.00 43.34 4.30
7834 8319 3.109619 GCATGCTCTACACGAGAAGTAC 58.890 50.000 11.37 0.00 42.62 2.73
8064 8549 9.301153 GTGTTTCATCATTTGTTTGAACTAAGT 57.699 29.630 0.00 0.00 0.00 2.24
8066 8551 8.755018 GTTTCATCATTTGTTTGAACTAAGTGG 58.245 33.333 0.00 0.00 0.00 4.00
8068 8553 7.648142 TCATCATTTGTTTGAACTAAGTGGAC 58.352 34.615 0.00 0.00 0.00 4.02
8069 8554 7.502226 TCATCATTTGTTTGAACTAAGTGGACT 59.498 33.333 0.00 0.00 0.00 3.85
8070 8555 8.783093 CATCATTTGTTTGAACTAAGTGGACTA 58.217 33.333 0.00 0.00 0.00 2.59
8071 8556 8.378172 TCATTTGTTTGAACTAAGTGGACTAG 57.622 34.615 0.00 0.00 0.00 2.57
8077 8963 8.571336 TGTTTGAACTAAGTGGACTAGTAGTAC 58.429 37.037 5.49 5.49 0.00 2.73
8116 9003 3.543626 TAGTGACCCCCACCCCCA 61.544 66.667 0.00 0.00 46.87 4.96
8124 9011 2.287251 CCCACCCCCACCCAAAAA 59.713 61.111 0.00 0.00 0.00 1.94
8125 9012 1.841103 CCCACCCCCACCCAAAAAG 60.841 63.158 0.00 0.00 0.00 2.27
8188 9075 1.880027 AGGAACAACACGCCAATCTTC 59.120 47.619 0.00 0.00 0.00 2.87
8255 9142 2.375174 TGACAAGGACATACCAAAGGCT 59.625 45.455 0.00 0.00 42.04 4.58
8314 9202 4.877378 ACTGTTGCACAATTGGAATCAT 57.123 36.364 10.83 0.00 35.26 2.45
8409 9308 1.339929 GCGGGTGTCCAATGACTTTTT 59.660 47.619 0.00 0.00 42.28 1.94
8439 9375 7.692460 ATTATTCAGAGTCATCAACTTGCAA 57.308 32.000 0.00 0.00 38.74 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.064222 GTGAATGTTGATCCAACTATGAATACG 58.936 37.037 10.63 0.00 43.85 3.06
28 29 5.049060 CCGTCTTACAAATGGTGAATGTTGA 60.049 40.000 0.00 0.00 0.00 3.18
36 37 4.935205 TCTGATTCCGTCTTACAAATGGTG 59.065 41.667 0.00 0.00 0.00 4.17
52 53 9.947669 CAAGGTCTCAATTGATTTATCTGATTC 57.052 33.333 8.96 0.00 0.00 2.52
73 74 2.912956 TCCTTTGGCTGTCTATCAAGGT 59.087 45.455 0.00 0.00 0.00 3.50
118 119 7.013464 TGCTCTTAGATACTGCTAGTACTTTCC 59.987 40.741 0.00 0.00 32.84 3.13
127 128 4.342092 TGCATGTGCTCTTAGATACTGCTA 59.658 41.667 6.55 0.00 42.66 3.49
129 130 3.247173 GTGCATGTGCTCTTAGATACTGC 59.753 47.826 6.55 10.79 42.66 4.40
130 131 4.436332 TGTGCATGTGCTCTTAGATACTG 58.564 43.478 6.55 0.00 42.66 2.74
157 158 6.365789 GGTATACGTACTTTTAGCACAACACA 59.634 38.462 0.00 0.00 0.00 3.72
158 159 6.587608 AGGTATACGTACTTTTAGCACAACAC 59.412 38.462 0.00 0.00 0.00 3.32
321 330 1.338973 CCTATAAGCGGTTCGGTGCTA 59.661 52.381 1.59 0.00 41.46 3.49
322 331 0.104304 CCTATAAGCGGTTCGGTGCT 59.896 55.000 1.59 0.00 44.97 4.40
323 332 0.878961 CCCTATAAGCGGTTCGGTGC 60.879 60.000 1.59 0.00 37.73 5.01
324 333 0.462789 ACCCTATAAGCGGTTCGGTG 59.537 55.000 1.59 0.92 37.73 4.94
326 335 2.320745 AAACCCTATAAGCGGTTCGG 57.679 50.000 1.59 3.11 41.58 4.30
391 400 3.448660 CCCCAAAAATAAAGAGGCAGGAG 59.551 47.826 0.00 0.00 0.00 3.69
491 500 3.671411 CGCTATCCTACGCCGCCT 61.671 66.667 0.00 0.00 0.00 5.52
586 595 2.891941 GATCCAATGCTGCGTCCCCA 62.892 60.000 0.00 0.00 0.00 4.96
830 839 2.625737 CCCCAGCGAGCATATAATGAG 58.374 52.381 0.00 0.00 0.00 2.90
831 840 1.339055 GCCCCAGCGAGCATATAATGA 60.339 52.381 0.00 0.00 0.00 2.57
896 905 4.373116 TCCTGCGGCGGTTCTGAC 62.373 66.667 9.78 0.00 0.00 3.51
930 939 0.878086 GCTCTACCGATCAGCAAGCC 60.878 60.000 0.00 0.00 33.06 4.35
955 964 4.669206 TCCAAGCAAGCAAGAAAATCAA 57.331 36.364 0.00 0.00 0.00 2.57
956 965 4.501915 CCTTCCAAGCAAGCAAGAAAATCA 60.502 41.667 0.00 0.00 0.00 2.57
957 966 3.992427 CCTTCCAAGCAAGCAAGAAAATC 59.008 43.478 0.00 0.00 0.00 2.17
958 967 3.642848 TCCTTCCAAGCAAGCAAGAAAAT 59.357 39.130 0.00 0.00 0.00 1.82
959 968 3.030291 TCCTTCCAAGCAAGCAAGAAAA 58.970 40.909 0.00 0.00 0.00 2.29
962 971 1.546323 CCTCCTTCCAAGCAAGCAAGA 60.546 52.381 0.00 0.00 0.00 3.02
986 995 0.193069 CCCCATGATCTCCTCCTCCT 59.807 60.000 0.00 0.00 0.00 3.69
987 996 0.192064 TCCCCATGATCTCCTCCTCC 59.808 60.000 0.00 0.00 0.00 4.30
988 997 1.643310 CTCCCCATGATCTCCTCCTC 58.357 60.000 0.00 0.00 0.00 3.71
1134 1146 0.315251 CGCGGCTGGAGAAGATGATA 59.685 55.000 0.00 0.00 0.00 2.15
1298 1311 1.064946 CCACGAAACAGCGGCAAAA 59.935 52.632 1.45 0.00 35.12 2.44
1423 1437 2.709397 CCCCTCCGGGTTATAAGAACAT 59.291 50.000 0.00 0.00 45.50 2.71
1804 1818 4.290711 TGGAAAGATGATGTGCAGAAGA 57.709 40.909 0.00 0.00 0.00 2.87
1812 1826 5.439721 TGAAATCGGATGGAAAGATGATGT 58.560 37.500 0.00 0.00 0.00 3.06
1949 1964 8.986477 AAAATGTTGATTTAAAGATTCTCCCG 57.014 30.769 0.00 0.00 31.18 5.14
2002 2017 7.275183 AGATTGAACAAGAAAAAGGGGAAAAG 58.725 34.615 0.00 0.00 0.00 2.27
2005 2020 5.304357 GGAGATTGAACAAGAAAAAGGGGAA 59.696 40.000 0.00 0.00 0.00 3.97
2006 2021 4.832823 GGAGATTGAACAAGAAAAAGGGGA 59.167 41.667 0.00 0.00 0.00 4.81
2045 2060 8.924511 TTAGAGAAAATGAACCAAGACAAGAT 57.075 30.769 0.00 0.00 0.00 2.40
2092 2107 0.396435 TGAACTTCACACGGCCAGAT 59.604 50.000 2.24 0.00 0.00 2.90
2099 2114 3.758300 ACTTTTGCTTGAACTTCACACG 58.242 40.909 0.00 0.00 0.00 4.49
2100 2115 6.322491 AGTTACTTTTGCTTGAACTTCACAC 58.678 36.000 0.00 0.00 0.00 3.82
2229 2250 6.410942 AAAATGAGGAAAGGAACAAGAAGG 57.589 37.500 0.00 0.00 0.00 3.46
2322 2343 6.715347 ATACAAAAATAACATGGGAGAGCC 57.285 37.500 0.00 0.00 0.00 4.70
2344 2365 7.761249 GCCACATTAGTAGAAGAAAATTGCAAT 59.239 33.333 5.99 5.99 0.00 3.56
2358 2379 7.651304 CAGAAACTAGATCTGCCACATTAGTAG 59.349 40.741 5.18 0.00 38.03 2.57
2397 2418 8.677148 AATAAATGAACTGCTTCGGTACATAT 57.323 30.769 0.00 0.00 0.00 1.78
2406 2427 8.365938 GCTTTTTCGTAATAAATGAACTGCTTC 58.634 33.333 0.00 0.00 32.72 3.86
2425 2446 7.728847 ACATGGGAAAATAAACTGCTTTTTC 57.271 32.000 0.00 0.00 38.19 2.29
2517 2539 2.596904 ATACGATTTGCTACCACGCT 57.403 45.000 0.00 0.00 0.00 5.07
2579 2605 8.842358 TTACCACCATCTAAGAAAACTTAGTG 57.158 34.615 14.03 11.73 37.94 2.74
2592 2618 4.468510 AGTTTGGACGATTACCACCATCTA 59.531 41.667 0.00 0.00 37.13 1.98
2660 2686 2.543653 CCACCGGAACAAAGAAGCAAAG 60.544 50.000 9.46 0.00 0.00 2.77
2687 2713 2.755103 CCAAAGGTGAATGCTCCTAACC 59.245 50.000 0.00 0.00 37.03 2.85
2711 2737 7.973944 AGAAAGTGTGATGTAACAAAAGGAAAC 59.026 33.333 0.00 0.00 0.00 2.78
2751 2786 4.100963 CACTAAGACATACCAGCCATACCA 59.899 45.833 0.00 0.00 0.00 3.25
2752 2787 4.632153 CACTAAGACATACCAGCCATACC 58.368 47.826 0.00 0.00 0.00 2.73
2777 2895 4.517832 ACATACTTTCCCAAAGAACCGTTC 59.482 41.667 2.81 2.81 41.02 3.95
3010 3132 6.975949 AGATCTACCGGGATAGATACTCAAT 58.024 40.000 13.14 0.00 41.14 2.57
3129 3251 5.688766 GCTCTAGAAATGAAGCCACCCTAAT 60.689 44.000 0.00 0.00 0.00 1.73
3151 3273 6.109359 GGAACATATCAGTTAACACAGAGCT 58.891 40.000 8.61 0.00 0.00 4.09
3171 3294 4.763279 TCGATTTTGTAAGAAAGGGGGAAC 59.237 41.667 0.00 0.00 0.00 3.62
3176 3299 5.897377 ACCATCGATTTTGTAAGAAAGGG 57.103 39.130 0.00 0.00 0.00 3.95
3528 3692 7.491682 ACTCAGTTTTCATATGTTTTGCAAGT 58.508 30.769 0.00 0.00 0.00 3.16
3537 3701 6.654582 TGCATGTGTACTCAGTTTTCATATGT 59.345 34.615 1.90 0.00 32.83 2.29
3552 3716 4.161333 GCTCAAGAACAATGCATGTGTAC 58.839 43.478 0.00 0.00 42.99 2.90
3594 3758 5.638234 AGTAGTGTTTCGGCATAAGAAGTTC 59.362 40.000 0.00 0.00 0.00 3.01
3664 3829 6.708949 TGGGAAATAAAACATATCGGTAGAGC 59.291 38.462 0.00 0.00 0.00 4.09
3725 3890 5.171476 TCTAGCTCTCTGGAATTTCAAACG 58.829 41.667 0.00 0.00 0.00 3.60
4082 4247 0.395311 ATGTCCAATGCCTCAGCCAG 60.395 55.000 0.00 0.00 38.69 4.85
4083 4248 0.040058 AATGTCCAATGCCTCAGCCA 59.960 50.000 0.00 0.00 38.69 4.75
4093 4258 7.417797 GCCATGACCAAATAAGTAATGTCCAAT 60.418 37.037 0.00 0.00 0.00 3.16
4307 4488 8.702163 AAACTCAACAATTAAACAACTTCAGG 57.298 30.769 0.00 0.00 0.00 3.86
4595 4779 9.031537 TGATAGAACAGAAGGACATAGTAACAA 57.968 33.333 0.00 0.00 0.00 2.83
4603 4787 7.340487 GGGAAAAATGATAGAACAGAAGGACAT 59.660 37.037 0.00 0.00 0.00 3.06
4626 4810 1.213619 TCAAGACATGCCATGGGGGA 61.214 55.000 15.13 0.00 40.01 4.81
4643 4827 2.728690 TACGCGAGCCTTAGTTTTCA 57.271 45.000 15.93 0.00 0.00 2.69
4649 4833 2.284417 GGTTCAAATACGCGAGCCTTAG 59.716 50.000 15.93 0.00 30.43 2.18
4652 4836 0.249398 AGGTTCAAATACGCGAGCCT 59.751 50.000 15.93 2.22 37.96 4.58
4657 4841 5.721876 TGGTATTAAGGTTCAAATACGCG 57.278 39.130 3.53 3.53 38.76 6.01
4658 4842 6.360329 CGATGGTATTAAGGTTCAAATACGC 58.640 40.000 0.00 0.00 38.76 4.42
4660 4844 8.617290 ATCCGATGGTATTAAGGTTCAAATAC 57.383 34.615 0.00 0.00 37.68 1.89
4681 4865 5.678132 TGATTGATGAGCATAACAATCCG 57.322 39.130 16.08 0.00 44.21 4.18
4786 4973 6.820152 GGCAAATAATGAATCCAAGAGCTTTT 59.180 34.615 0.00 0.00 0.00 2.27
4830 5022 2.027192 ACTGGACTAACGTGGCATTGAT 60.027 45.455 0.00 0.00 0.00 2.57
4972 5164 8.213679 AGAGCAGAAATATACAGCCAAATTAGA 58.786 33.333 0.00 0.00 0.00 2.10
5000 5192 3.450904 ACATTTCCTGGTACCAGCTCTA 58.549 45.455 32.98 18.74 42.35 2.43
5090 5282 5.068329 TGAATCTACGCTCTGTGAATGAGAT 59.932 40.000 0.00 0.00 33.68 2.75
5104 5296 9.084164 TCTTAGTCACTTAATTTGAATCTACGC 57.916 33.333 0.00 0.00 0.00 4.42
5155 5347 4.153986 CAAGTGTCTGCTCAAAATAAGCG 58.846 43.478 0.00 0.00 42.83 4.68
5344 5538 6.064060 CCAGTGCCATTAATAGATCCAAGAA 58.936 40.000 0.00 0.00 0.00 2.52
5353 5547 4.717877 TGTGATCCCAGTGCCATTAATAG 58.282 43.478 0.00 0.00 0.00 1.73
5354 5548 4.787135 TGTGATCCCAGTGCCATTAATA 57.213 40.909 0.00 0.00 0.00 0.98
5383 5577 9.098355 CATATTCCATATTTCCTGTATGGTACG 57.902 37.037 10.89 0.00 45.68 3.67
5389 5583 9.122954 TGTACCCATATTCCATATTTCCTGTAT 57.877 33.333 0.00 0.00 0.00 2.29
5393 5587 7.888514 TCTGTACCCATATTCCATATTTCCT 57.111 36.000 0.00 0.00 0.00 3.36
5480 5685 9.322769 AGAGGGTAATGTAGTTCTCTAGAAAAA 57.677 33.333 0.00 0.00 35.58 1.94
5485 5690 9.059260 GTCTAAGAGGGTAATGTAGTTCTCTAG 57.941 40.741 0.00 0.00 32.12 2.43
5486 5691 8.780003 AGTCTAAGAGGGTAATGTAGTTCTCTA 58.220 37.037 0.00 0.00 32.12 2.43
5590 5797 4.020573 AGTGGATTTGAATCGTCAGGTACA 60.021 41.667 0.00 0.00 36.27 2.90
5615 5822 2.037511 ACCGTACCATCAGAAAAACCGA 59.962 45.455 0.00 0.00 0.00 4.69
5622 5829 2.028476 CCACTGAACCGTACCATCAGAA 60.028 50.000 18.74 0.00 42.48 3.02
5624 5831 2.007049 GCCACTGAACCGTACCATCAG 61.007 57.143 12.99 12.99 44.77 2.90
5625 5832 0.036765 GCCACTGAACCGTACCATCA 60.037 55.000 0.00 0.00 0.00 3.07
5626 5833 0.249398 AGCCACTGAACCGTACCATC 59.751 55.000 0.00 0.00 0.00 3.51
5627 5834 0.249398 GAGCCACTGAACCGTACCAT 59.751 55.000 0.00 0.00 0.00 3.55
5628 5835 0.830444 AGAGCCACTGAACCGTACCA 60.830 55.000 0.00 0.00 0.00 3.25
5629 5836 1.180029 TAGAGCCACTGAACCGTACC 58.820 55.000 0.00 0.00 0.00 3.34
5630 5837 2.991866 GTTTAGAGCCACTGAACCGTAC 59.008 50.000 5.32 0.00 38.59 3.67
5632 5839 1.414919 TGTTTAGAGCCACTGAACCGT 59.585 47.619 11.53 0.00 42.13 4.83
5633 5840 2.163818 TGTTTAGAGCCACTGAACCG 57.836 50.000 11.53 0.00 42.13 4.44
5659 5866 8.424918 CAGGAAAGGAGATCTGCTACTAATTTA 58.575 37.037 17.95 0.00 36.52 1.40
5676 5883 6.126409 TCTAAAAGAAAACAGCAGGAAAGGA 58.874 36.000 0.00 0.00 0.00 3.36
5677 5884 6.391227 TCTAAAAGAAAACAGCAGGAAAGG 57.609 37.500 0.00 0.00 0.00 3.11
5678 5885 8.877808 ATTTCTAAAAGAAAACAGCAGGAAAG 57.122 30.769 6.21 0.00 46.08 2.62
5679 5886 9.965824 CTATTTCTAAAAGAAAACAGCAGGAAA 57.034 29.630 6.21 0.00 46.08 3.13
5680 5887 9.349713 TCTATTTCTAAAAGAAAACAGCAGGAA 57.650 29.630 6.21 0.00 46.08 3.36
5681 5888 8.918202 TCTATTTCTAAAAGAAAACAGCAGGA 57.082 30.769 6.21 0.00 46.08 3.86
5682 5889 9.965824 TTTCTATTTCTAAAAGAAAACAGCAGG 57.034 29.630 6.21 0.00 46.08 4.85
5695 5902 9.532697 GCGATGTAAACGTTTTCTATTTCTAAA 57.467 29.630 20.19 0.00 33.27 1.85
5696 5903 8.170553 GGCGATGTAAACGTTTTCTATTTCTAA 58.829 33.333 20.19 0.00 33.27 2.10
5697 5904 7.201548 GGGCGATGTAAACGTTTTCTATTTCTA 60.202 37.037 20.19 0.00 33.27 2.10
5698 5905 6.402875 GGGCGATGTAAACGTTTTCTATTTCT 60.403 38.462 20.19 0.00 33.27 2.52
5699 5906 5.735892 GGGCGATGTAAACGTTTTCTATTTC 59.264 40.000 20.19 9.02 33.27 2.17
5700 5907 5.392272 GGGGCGATGTAAACGTTTTCTATTT 60.392 40.000 20.19 1.20 33.27 1.40
5701 5908 4.095334 GGGGCGATGTAAACGTTTTCTATT 59.905 41.667 20.19 3.65 33.27 1.73
5702 5909 3.624410 GGGGCGATGTAAACGTTTTCTAT 59.376 43.478 20.19 11.01 33.27 1.98
5703 5910 3.002102 GGGGCGATGTAAACGTTTTCTA 58.998 45.455 20.19 6.44 33.27 2.10
5704 5911 1.808343 GGGGCGATGTAAACGTTTTCT 59.192 47.619 20.19 4.10 33.27 2.52
5705 5912 1.808343 AGGGGCGATGTAAACGTTTTC 59.192 47.619 20.19 14.83 33.27 2.29
5706 5913 1.538075 CAGGGGCGATGTAAACGTTTT 59.462 47.619 20.19 0.19 33.27 2.43
5707 5914 1.161843 CAGGGGCGATGTAAACGTTT 58.838 50.000 18.90 18.90 33.27 3.60
5708 5915 0.322322 TCAGGGGCGATGTAAACGTT 59.678 50.000 0.00 0.00 33.27 3.99
5709 5916 0.322322 TTCAGGGGCGATGTAAACGT 59.678 50.000 0.00 0.00 33.27 3.99
5710 5917 1.006832 CTTCAGGGGCGATGTAAACG 58.993 55.000 0.00 0.00 34.14 3.60
5714 5952 2.039216 TCAAAACTTCAGGGGCGATGTA 59.961 45.455 0.00 0.00 0.00 2.29
5719 5957 1.866853 GCCTCAAAACTTCAGGGGCG 61.867 60.000 0.00 0.00 0.00 6.13
5728 5966 4.150897 TGTTCTGTACAGCCTCAAAACT 57.849 40.909 18.45 0.00 31.68 2.66
5831 6069 0.889994 TAAACCGAGCACCGCTAGAA 59.110 50.000 0.00 0.00 39.88 2.10
5892 6130 4.140447 AGGTCCATATCATCCCTTGAGGTA 60.140 45.833 0.00 0.00 37.89 3.08
5912 6150 6.184789 TGTTACCTCTTTCAGTTGAAAAGGT 58.815 36.000 26.17 26.17 45.76 3.50
5967 6205 8.033038 TCTAAAACGCTACTCATACAAGTGATT 58.967 33.333 0.00 0.00 0.00 2.57
5968 6206 7.544622 TCTAAAACGCTACTCATACAAGTGAT 58.455 34.615 0.00 0.00 0.00 3.06
5981 6288 8.267367 GCATGAATTAGTACTCTAAAACGCTAC 58.733 37.037 0.00 0.00 39.23 3.58
5983 6290 6.258068 GGCATGAATTAGTACTCTAAAACGCT 59.742 38.462 0.00 0.00 39.23 5.07
5984 6291 6.036735 TGGCATGAATTAGTACTCTAAAACGC 59.963 38.462 0.00 0.00 39.23 4.84
5986 6293 7.857885 GCATGGCATGAATTAGTACTCTAAAAC 59.142 37.037 30.69 2.62 39.23 2.43
5997 6304 4.556233 CCAGATTGCATGGCATGAATTAG 58.444 43.478 30.69 18.90 38.76 1.73
5998 6305 4.594123 CCAGATTGCATGGCATGAATTA 57.406 40.909 30.69 7.01 38.76 1.40
6010 6317 6.528537 AAATGTATGTAAAGCCAGATTGCA 57.471 33.333 0.00 0.00 0.00 4.08
6071 6378 7.065803 TGCAACATAGCTGACTTAGAAATAACC 59.934 37.037 0.00 0.00 34.99 2.85
6133 6446 1.825474 AGACCCGTCGACTCAATGATT 59.175 47.619 14.70 0.00 34.09 2.57
6145 6458 0.605319 TTGTCCATTGCAGACCCGTC 60.605 55.000 2.46 0.00 33.09 4.79
6278 6591 5.625311 GTCGACAATCTTGAATGTTTGTTCC 59.375 40.000 11.55 0.00 32.17 3.62
6282 6595 7.796838 TCTAAGTCGACAATCTTGAATGTTTG 58.203 34.615 19.50 0.00 0.00 2.93
6283 6596 7.962964 TCTAAGTCGACAATCTTGAATGTTT 57.037 32.000 19.50 0.61 0.00 2.83
6305 6618 5.939883 TCGACAATCTTGATTGGTCATTTCT 59.060 36.000 22.37 4.08 35.93 2.52
6306 6619 6.024049 GTCGACAATCTTGATTGGTCATTTC 58.976 40.000 22.37 11.66 35.93 2.17
6307 6620 5.106157 GGTCGACAATCTTGATTGGTCATTT 60.106 40.000 18.91 5.29 35.93 2.32
6308 6621 4.396166 GGTCGACAATCTTGATTGGTCATT 59.604 41.667 18.91 5.89 35.93 2.57
6309 6622 3.941483 GGTCGACAATCTTGATTGGTCAT 59.059 43.478 18.91 6.20 35.93 3.06
6310 6623 3.007940 AGGTCGACAATCTTGATTGGTCA 59.992 43.478 18.91 7.12 35.93 4.02
6311 6624 3.600388 AGGTCGACAATCTTGATTGGTC 58.400 45.455 18.91 16.55 35.93 4.02
6312 6625 3.703001 AGGTCGACAATCTTGATTGGT 57.297 42.857 18.91 11.38 35.93 3.67
6313 6626 5.011090 TCTAGGTCGACAATCTTGATTGG 57.989 43.478 18.91 9.71 35.93 3.16
6314 6627 6.968131 TTTCTAGGTCGACAATCTTGATTG 57.032 37.500 18.91 18.47 37.54 2.67
6315 6628 7.278868 GTCATTTCTAGGTCGACAATCTTGATT 59.721 37.037 18.91 0.95 0.00 2.57
6316 6629 6.758886 GTCATTTCTAGGTCGACAATCTTGAT 59.241 38.462 18.91 0.00 0.00 2.57
6317 6630 6.071334 AGTCATTTCTAGGTCGACAATCTTGA 60.071 38.462 18.91 8.93 0.00 3.02
6318 6631 6.102663 AGTCATTTCTAGGTCGACAATCTTG 58.897 40.000 18.91 6.65 0.00 3.02
6319 6632 6.287589 AGTCATTTCTAGGTCGACAATCTT 57.712 37.500 18.91 0.00 0.00 2.40
6320 6633 5.923733 AGTCATTTCTAGGTCGACAATCT 57.076 39.130 18.91 7.98 0.00 2.40
6321 6634 6.561614 TGTAGTCATTTCTAGGTCGACAATC 58.438 40.000 18.91 0.00 0.00 2.67
6322 6635 6.525578 TGTAGTCATTTCTAGGTCGACAAT 57.474 37.500 18.91 7.85 0.00 2.71
6323 6636 5.970317 TGTAGTCATTTCTAGGTCGACAA 57.030 39.130 18.91 2.47 0.00 3.18
6324 6637 5.417894 ACATGTAGTCATTTCTAGGTCGACA 59.582 40.000 18.91 0.00 31.15 4.35
6325 6638 5.892568 ACATGTAGTCATTTCTAGGTCGAC 58.107 41.667 7.13 7.13 31.15 4.20
6326 6639 6.525578 AACATGTAGTCATTTCTAGGTCGA 57.474 37.500 0.00 0.00 31.15 4.20
6327 6640 7.481642 ACTAACATGTAGTCATTTCTAGGTCG 58.518 38.462 0.00 0.00 31.15 4.79
6328 6641 7.644551 CGACTAACATGTAGTCATTTCTAGGTC 59.355 40.741 23.38 9.84 42.94 3.85
6329 6642 7.481642 CGACTAACATGTAGTCATTTCTAGGT 58.518 38.462 23.38 0.81 42.94 3.08
6330 6643 6.418226 GCGACTAACATGTAGTCATTTCTAGG 59.582 42.308 23.38 12.68 42.94 3.02
6331 6644 6.418226 GGCGACTAACATGTAGTCATTTCTAG 59.582 42.308 23.38 12.36 42.94 2.43
6332 6645 6.096423 AGGCGACTAACATGTAGTCATTTCTA 59.904 38.462 23.38 3.23 42.94 2.10
6345 6658 5.127194 TGACTATTTCTCAGGCGACTAACAT 59.873 40.000 0.00 0.00 40.21 2.71
6356 6669 5.998454 AATTCGGCATGACTATTTCTCAG 57.002 39.130 0.00 0.00 0.00 3.35
6409 6725 9.496873 TCCCTTTTATACCGTTCATGTATAATG 57.503 33.333 0.00 0.00 39.57 1.90
6421 6737 3.871074 GCACCAGTTCCCTTTTATACCGT 60.871 47.826 0.00 0.00 0.00 4.83
6422 6738 2.681344 GCACCAGTTCCCTTTTATACCG 59.319 50.000 0.00 0.00 0.00 4.02
6460 6804 2.094675 GTAGCCAATCTTGCATGGTGT 58.905 47.619 5.97 0.00 39.00 4.16
6490 6835 7.341445 TGGAAATTCGGTTAGGGAAATATTG 57.659 36.000 0.00 0.00 0.00 1.90
6491 6836 7.964666 TTGGAAATTCGGTTAGGGAAATATT 57.035 32.000 0.00 0.00 0.00 1.28
6498 6843 6.769134 AAACTATTGGAAATTCGGTTAGGG 57.231 37.500 0.00 0.00 0.00 3.53
6510 6855 9.638239 GAAAACTTCATGCATAAACTATTGGAA 57.362 29.630 0.00 0.00 0.00 3.53
6531 6876 1.877443 AGCACCACGGTACATGAAAAC 59.123 47.619 0.00 0.00 0.00 2.43
6539 6884 0.322187 ATTCCCAAGCACCACGGTAC 60.322 55.000 0.00 0.00 0.00 3.34
6543 6888 1.670811 GATGTATTCCCAAGCACCACG 59.329 52.381 0.00 0.00 0.00 4.94
6544 6889 2.722094 TGATGTATTCCCAAGCACCAC 58.278 47.619 0.00 0.00 0.00 4.16
6549 6894 6.006759 GCTTAGAATGATGTATTCCCAAGC 57.993 41.667 15.00 15.00 46.14 4.01
6551 6896 6.422333 TGTGCTTAGAATGATGTATTCCCAA 58.578 36.000 0.00 0.00 45.15 4.12
6577 6928 5.287170 ACATATATGTGCGCATGAACATC 57.713 39.130 22.84 0.00 40.58 3.06
6626 6977 6.283694 TGGACAGATCATAGAACAATACAGC 58.716 40.000 0.00 0.00 0.00 4.40
6834 7269 2.492881 TCTGCGAACCGATAACTTGGTA 59.507 45.455 0.00 0.00 38.29 3.25
6890 7325 3.808728 TGCTATGTTGCATACCTTCCTC 58.191 45.455 0.00 0.00 38.12 3.71
6902 7337 1.096967 TCGCCCATGCTGCTATGTTG 61.097 55.000 0.00 0.00 34.43 3.33
6925 7360 6.686679 CACACACACAAACATGTACAAGTAAG 59.313 38.462 3.84 3.02 0.00 2.34
6927 7362 5.644206 ACACACACACAAACATGTACAAGTA 59.356 36.000 3.84 0.00 0.00 2.24
6928 7363 4.457603 ACACACACACAAACATGTACAAGT 59.542 37.500 0.00 0.00 0.00 3.16
6931 7366 3.426829 GCACACACACACAAACATGTACA 60.427 43.478 0.00 0.00 0.00 2.90
6932 7367 3.105203 GCACACACACACAAACATGTAC 58.895 45.455 0.00 0.00 0.00 2.90
6933 7368 2.223135 CGCACACACACACAAACATGTA 60.223 45.455 0.00 0.00 0.00 2.29
6934 7369 1.467204 CGCACACACACACAAACATGT 60.467 47.619 0.00 0.00 0.00 3.21
6935 7370 1.190249 CGCACACACACACAAACATG 58.810 50.000 0.00 0.00 0.00 3.21
6936 7371 0.525242 GCGCACACACACACAAACAT 60.525 50.000 0.30 0.00 0.00 2.71
6937 7372 1.154131 GCGCACACACACACAAACA 60.154 52.632 0.30 0.00 0.00 2.83
6938 7373 0.375454 TAGCGCACACACACACAAAC 59.625 50.000 11.47 0.00 0.00 2.93
6939 7374 0.375454 GTAGCGCACACACACACAAA 59.625 50.000 11.47 0.00 0.00 2.83
6940 7375 0.461163 AGTAGCGCACACACACACAA 60.461 50.000 11.47 0.00 0.00 3.33
6951 7386 4.023963 CAGTAGATAACTAGCAGTAGCGCA 60.024 45.833 11.47 0.00 40.76 6.09
6953 7388 4.214545 AGCAGTAGATAACTAGCAGTAGCG 59.785 45.833 0.00 0.00 40.76 4.26
6955 7390 6.367421 CGAAGCAGTAGATAACTAGCAGTAG 58.633 44.000 0.00 0.00 35.76 2.57
6956 7391 6.301687 CGAAGCAGTAGATAACTAGCAGTA 57.698 41.667 0.00 0.00 35.76 2.74
6957 7392 5.176407 CGAAGCAGTAGATAACTAGCAGT 57.824 43.478 0.00 0.00 35.76 4.40
6982 7417 5.236047 GCAATGCAAGTCATCCTAGTAGAAG 59.764 44.000 0.00 0.00 33.40 2.85
6983 7418 5.118990 GCAATGCAAGTCATCCTAGTAGAA 58.881 41.667 0.00 0.00 33.40 2.10
6985 7420 3.812053 GGCAATGCAAGTCATCCTAGTAG 59.188 47.826 7.79 0.00 33.40 2.57
6986 7421 3.741075 CGGCAATGCAAGTCATCCTAGTA 60.741 47.826 7.79 0.00 33.40 1.82
6987 7422 2.648059 GGCAATGCAAGTCATCCTAGT 58.352 47.619 7.79 0.00 33.40 2.57
6988 7423 1.600957 CGGCAATGCAAGTCATCCTAG 59.399 52.381 7.79 0.00 33.40 3.02
6989 7424 1.065491 ACGGCAATGCAAGTCATCCTA 60.065 47.619 7.79 0.00 33.40 2.94
6990 7425 0.322816 ACGGCAATGCAAGTCATCCT 60.323 50.000 7.79 0.00 33.40 3.24
6991 7426 1.331756 CTACGGCAATGCAAGTCATCC 59.668 52.381 7.79 0.00 33.40 3.51
6992 7427 1.268234 GCTACGGCAATGCAAGTCATC 60.268 52.381 7.79 0.00 38.54 2.92
7003 7438 2.226330 ACATTGACAAAGCTACGGCAA 58.774 42.857 6.07 6.07 41.70 4.52
7012 7447 7.812191 CCTAGATAGCTAGCTACATTGACAAAG 59.188 40.741 26.41 12.57 42.29 2.77
7025 7460 4.439016 GCAATACGTCCCTAGATAGCTAGC 60.439 50.000 6.62 6.62 42.29 3.42
7069 7504 3.403038 ACATAGATATGCGGTCAAAGGC 58.597 45.455 0.00 0.00 37.19 4.35
7075 7510 4.142160 TGGCTCATACATAGATATGCGGTC 60.142 45.833 0.00 0.00 37.19 4.79
7083 7518 3.331478 GCTGCTGGCTCATACATAGAT 57.669 47.619 0.00 0.00 38.06 1.98
7084 7519 2.827800 GCTGCTGGCTCATACATAGA 57.172 50.000 0.00 0.00 38.06 1.98
7108 7543 5.446860 AGATATCTACAAGAGGGTGAACGA 58.553 41.667 2.53 0.00 0.00 3.85
7115 7550 7.389053 GGTGCAATAAAGATATCTACAAGAGGG 59.611 40.741 5.46 0.00 0.00 4.30
7153 7589 8.336801 AGTTCCTCTGTATGTTACAAAAATCC 57.663 34.615 0.00 0.00 38.38 3.01
7171 7607 8.021396 GTGAATTGTATGTTGGTAAAGTTCCTC 58.979 37.037 0.00 0.00 0.00 3.71
7172 7608 7.039993 GGTGAATTGTATGTTGGTAAAGTTCCT 60.040 37.037 0.00 0.00 0.00 3.36
7173 7609 7.088272 GGTGAATTGTATGTTGGTAAAGTTCC 58.912 38.462 0.00 0.00 0.00 3.62
7174 7610 6.799925 CGGTGAATTGTATGTTGGTAAAGTTC 59.200 38.462 0.00 0.00 0.00 3.01
7175 7611 6.294286 CCGGTGAATTGTATGTTGGTAAAGTT 60.294 38.462 0.00 0.00 0.00 2.66
7176 7612 5.182380 CCGGTGAATTGTATGTTGGTAAAGT 59.818 40.000 0.00 0.00 0.00 2.66
7177 7613 5.413213 TCCGGTGAATTGTATGTTGGTAAAG 59.587 40.000 0.00 0.00 0.00 1.85
7178 7614 5.314529 TCCGGTGAATTGTATGTTGGTAAA 58.685 37.500 0.00 0.00 0.00 2.01
7179 7615 4.907809 TCCGGTGAATTGTATGTTGGTAA 58.092 39.130 0.00 0.00 0.00 2.85
7180 7616 4.554960 TCCGGTGAATTGTATGTTGGTA 57.445 40.909 0.00 0.00 0.00 3.25
7181 7617 3.426787 TCCGGTGAATTGTATGTTGGT 57.573 42.857 0.00 0.00 0.00 3.67
7182 7618 3.694072 ACATCCGGTGAATTGTATGTTGG 59.306 43.478 0.00 0.00 0.00 3.77
7183 7619 4.963276 ACATCCGGTGAATTGTATGTTG 57.037 40.909 0.00 0.00 0.00 3.33
7184 7620 5.741011 AGTACATCCGGTGAATTGTATGTT 58.259 37.500 0.00 0.00 0.00 2.71
7192 7628 3.196901 TGTAGCAAGTACATCCGGTGAAT 59.803 43.478 0.00 0.00 36.67 2.57
7211 7688 1.153568 GCTGACGCTCCTGCATGTA 60.154 57.895 0.00 0.00 39.64 2.29
7283 7760 9.503427 GTGTGCAGTTCAAATAGGAATAATAAC 57.497 33.333 0.00 0.00 0.00 1.89
7324 7804 6.407475 AAAAAGGAATACAAATGCGAATGC 57.593 33.333 0.00 0.00 43.20 3.56
7336 7816 7.307160 GCAAAGCCAACAGTTAAAAAGGAATAC 60.307 37.037 0.00 0.00 0.00 1.89
7356 7836 0.591170 TCGGCAACAAGTAGCAAAGC 59.409 50.000 0.00 0.00 0.00 3.51
7357 7837 1.873591 ACTCGGCAACAAGTAGCAAAG 59.126 47.619 0.00 0.00 0.00 2.77
7360 7840 0.679505 AGACTCGGCAACAAGTAGCA 59.320 50.000 0.00 0.00 0.00 3.49
7361 7841 1.071605 CAGACTCGGCAACAAGTAGC 58.928 55.000 0.00 0.00 0.00 3.58
7362 7842 1.071605 GCAGACTCGGCAACAAGTAG 58.928 55.000 0.00 0.00 0.00 2.57
7363 7843 0.391228 TGCAGACTCGGCAACAAGTA 59.609 50.000 0.87 0.00 38.54 2.24
7364 7844 0.882042 CTGCAGACTCGGCAACAAGT 60.882 55.000 8.42 0.00 41.39 3.16
7368 7848 2.358003 AGCTGCAGACTCGGCAAC 60.358 61.111 20.43 1.06 41.39 4.17
7495 7975 0.393402 TGATTAGGGTGCTGCTGCTG 60.393 55.000 17.00 0.77 40.48 4.41
7496 7976 0.549950 ATGATTAGGGTGCTGCTGCT 59.450 50.000 17.00 0.00 40.48 4.24
7497 7977 1.336125 GAATGATTAGGGTGCTGCTGC 59.664 52.381 8.89 8.89 40.20 5.25
7594 8077 0.892755 AGTTCAGTTGCATGCATGGG 59.107 50.000 27.34 13.58 0.00 4.00
7707 8192 1.379044 CCCACCCCAGCATGAAGTC 60.379 63.158 0.00 0.00 39.69 3.01
7812 8297 1.195347 CTTCTCGTGTAGAGCATGCG 58.805 55.000 13.01 0.00 46.44 4.73
7998 8483 8.927675 TGTCCACAAATTATAGTTTTACTGGT 57.072 30.769 7.92 0.00 0.00 4.00
8064 8549 2.439409 TGCGCAAGTACTACTAGTCCA 58.561 47.619 8.16 0.00 41.68 4.02
8066 8551 3.372954 CCATGCGCAAGTACTACTAGTC 58.627 50.000 17.11 0.00 41.68 2.59
8068 8553 2.361119 TCCCATGCGCAAGTACTACTAG 59.639 50.000 17.11 0.00 41.68 2.57
8069 8554 2.100252 GTCCCATGCGCAAGTACTACTA 59.900 50.000 17.11 0.00 41.68 1.82
8070 8555 1.134788 GTCCCATGCGCAAGTACTACT 60.135 52.381 17.11 0.00 41.68 2.57
8071 8556 1.134788 AGTCCCATGCGCAAGTACTAC 60.135 52.381 17.11 8.54 41.68 2.73
8077 8963 1.667236 TATTGAGTCCCATGCGCAAG 58.333 50.000 17.11 10.85 43.44 4.01
8116 9003 9.108284 CAATTGTTTATCAACTTCTTTTTGGGT 57.892 29.630 0.00 0.00 38.97 4.51
8124 9011 9.162764 ACGTATAGCAATTGTTTATCAACTTCT 57.837 29.630 7.40 0.00 38.97 2.85
8125 9012 9.210426 CACGTATAGCAATTGTTTATCAACTTC 57.790 33.333 7.40 0.00 38.97 3.01
8314 9202 6.773685 ACCTTACACTTAATTGTGGCAAGTTA 59.226 34.615 8.60 0.00 41.84 2.24
8413 9312 8.791327 TGCAAGTTGATGACTCTGAATAATTA 57.209 30.769 7.16 0.00 37.72 1.40
8439 9375 4.795469 TGATCAAGATGGCCATACATGTT 58.205 39.130 20.84 12.59 35.03 2.71
8504 9445 8.843885 TGAAAAATGTTTGATTTGCCATGATA 57.156 26.923 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.