Multiple sequence alignment - TraesCS6A01G258500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G258500 chr6A 100.000 4137 0 0 1 4137 480650604 480646468 0.000000e+00 7640.0
1 TraesCS6A01G258500 chr6A 100.000 56 0 0 2661 2716 209391396 209391341 2.030000e-18 104.0
2 TraesCS6A01G258500 chr6B 90.733 982 58 15 642 1611 480374144 480375104 0.000000e+00 1279.0
3 TraesCS6A01G258500 chr6B 93.780 820 32 7 1763 2572 480375134 480375944 0.000000e+00 1214.0
4 TraesCS6A01G258500 chr6B 93.110 537 23 2 2666 3199 480375945 480376470 0.000000e+00 774.0
5 TraesCS6A01G258500 chr6B 90.693 462 32 6 3687 4137 480377518 480377979 4.570000e-169 604.0
6 TraesCS6A01G258500 chr6B 90.452 199 16 2 3192 3390 480376535 480376730 4.100000e-65 259.0
7 TraesCS6A01G258500 chr6B 84.112 214 25 5 3464 3673 480377053 480377261 9.070000e-47 198.0
8 TraesCS6A01G258500 chr6B 100.000 56 0 0 2661 2716 278674668 278674613 2.030000e-18 104.0
9 TraesCS6A01G258500 chr6D 93.099 826 27 10 794 1611 340469553 340468750 0.000000e+00 1182.0
10 TraesCS6A01G258500 chr6D 95.993 549 22 0 2050 2598 340468500 340467952 0.000000e+00 893.0
11 TraesCS6A01G258500 chr6D 91.913 643 37 8 1 643 340470555 340469928 0.000000e+00 885.0
12 TraesCS6A01G258500 chr6D 89.884 692 55 9 3451 4137 340466284 340465603 0.000000e+00 876.0
13 TraesCS6A01G258500 chr6D 96.791 374 12 0 2826 3199 340467617 340467244 3.510000e-175 625.0
14 TraesCS6A01G258500 chr6D 91.000 200 15 2 3192 3390 340467178 340466981 2.450000e-67 267.0
15 TraesCS6A01G258500 chr6D 100.000 56 0 0 2661 2716 155602016 155601961 2.030000e-18 104.0
16 TraesCS6A01G258500 chr6D 89.706 68 7 0 3384 3451 340466909 340466842 2.050000e-13 87.9
17 TraesCS6A01G258500 chr6D 86.486 74 2 2 2624 2697 340467730 340467665 1.600000e-09 75.0
18 TraesCS6A01G258500 chr1B 97.345 113 2 1 1618 1729 687254050 687253938 1.520000e-44 191.0
19 TraesCS6A01G258500 chr1B 96.610 59 2 0 2661 2719 556993826 556993768 9.460000e-17 99.0
20 TraesCS6A01G258500 chr2A 96.552 116 1 3 1615 1728 115096211 115096097 5.460000e-44 189.0
21 TraesCS6A01G258500 chr2A 92.913 127 4 5 1613 1737 631961844 631961721 3.290000e-41 180.0
22 TraesCS6A01G258500 chr2A 88.298 94 3 2 2623 2716 775526505 775526420 5.660000e-19 106.0
23 TraesCS6A01G258500 chr3A 96.491 114 2 2 1615 1727 256934686 256934798 1.960000e-43 187.0
24 TraesCS6A01G258500 chr3A 97.297 111 2 1 1619 1728 648548911 648549021 1.960000e-43 187.0
25 TraesCS6A01G258500 chr3A 93.651 126 4 4 1612 1736 588840309 588840431 7.060000e-43 185.0
26 TraesCS6A01G258500 chr1D 96.491 114 2 2 1615 1727 227655420 227655308 1.960000e-43 187.0
27 TraesCS6A01G258500 chr5D 96.460 113 3 1 1616 1727 134808383 134808271 7.060000e-43 185.0
28 TraesCS6A01G258500 chr5D 87.671 73 6 3 2585 2655 294640358 294640287 9.530000e-12 82.4
29 TraesCS6A01G258500 chr4A 96.460 113 2 2 1615 1726 381226938 381227049 7.060000e-43 185.0
30 TraesCS6A01G258500 chr5B 85.987 157 19 2 432 586 378611391 378611546 9.200000e-37 165.0
31 TraesCS6A01G258500 chr2D 88.298 94 3 2 2623 2716 649145860 649145945 5.660000e-19 106.0
32 TraesCS6A01G258500 chr2B 88.298 94 3 2 2623 2716 785136227 785136312 5.660000e-19 106.0
33 TraesCS6A01G258500 chr4D 95.238 63 3 0 2661 2723 463465569 463465507 2.630000e-17 100.0
34 TraesCS6A01G258500 chr4D 89.062 64 6 1 2565 2627 492239333 492239270 1.230000e-10 78.7
35 TraesCS6A01G258500 chr3B 98.039 51 1 0 2577 2627 820446017 820445967 5.700000e-14 89.8
36 TraesCS6A01G258500 chr3B 98.000 50 1 0 2576 2625 740043010 740043059 2.050000e-13 87.9
37 TraesCS6A01G258500 chr4B 94.643 56 3 0 2570 2625 23660769 23660824 2.050000e-13 87.9
38 TraesCS6A01G258500 chr3D 100.000 47 0 0 2581 2627 329496954 329496908 2.050000e-13 87.9
39 TraesCS6A01G258500 chr3D 90.164 61 6 0 2575 2635 346309112 346309052 3.430000e-11 80.5
40 TraesCS6A01G258500 chr3D 81.553 103 9 6 2624 2721 547429580 547429677 4.430000e-10 76.8
41 TraesCS6A01G258500 chr7D 89.855 69 3 3 2583 2649 467043796 467043862 7.370000e-13 86.1
42 TraesCS6A01G258500 chr7A 92.982 57 4 0 2572 2628 60725507 60725563 2.650000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G258500 chr6A 480646468 480650604 4136 True 7640.000000 7640 100.000 1 4137 1 chr6A.!!$R2 4136
1 TraesCS6A01G258500 chr6B 480374144 480377979 3835 False 721.333333 1279 90.480 642 4137 6 chr6B.!!$F1 3495
2 TraesCS6A01G258500 chr6D 340465603 340470555 4952 True 611.362500 1182 91.859 1 4137 8 chr6D.!!$R2 4136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 302 0.257039 ATGCTGAAGGGGTGATCCAC 59.743 55.0 0.00 0.0 37.22 4.02 F
1397 1679 0.250814 TACCGGGCGTGTGGAATTTT 60.251 50.0 6.32 0.0 0.00 1.82 F
1609 1893 0.038166 CCCTCTAGCTTTTGTGGGCA 59.962 55.0 0.00 0.0 31.42 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1874 0.038166 TGCCCACAAAAGCTAGAGGG 59.962 55.0 10.59 10.59 38.51 4.30 R
2651 3141 2.777832 AAACTGCCAAACTGCCAAAA 57.222 40.0 0.00 0.00 0.00 2.44 R
3568 4949 0.731417 GCTGCTGTATGCTGGTGAAG 59.269 55.0 0.00 0.00 43.37 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.315066 TCTTATTTTTCATCCAAAAAGGCCT 57.685 32.000 0.00 0.00 45.20 5.19
73 74 2.618709 CCAAAAAGGCCTATCATCGGAC 59.381 50.000 5.16 0.00 0.00 4.79
76 77 0.469331 AAGGCCTATCATCGGACCGA 60.469 55.000 20.85 20.85 41.13 4.69
104 105 3.107601 ACCACCTCAGCTAGCATAGAAA 58.892 45.455 18.83 0.00 42.77 2.52
105 106 3.133721 ACCACCTCAGCTAGCATAGAAAG 59.866 47.826 18.83 8.40 42.77 2.62
154 155 8.585881 TGATTAGTATTTAGCCATCCACTAGAC 58.414 37.037 0.00 0.00 0.00 2.59
161 162 2.761208 AGCCATCCACTAGACTGTACAC 59.239 50.000 0.00 0.00 0.00 2.90
162 163 2.496070 GCCATCCACTAGACTGTACACA 59.504 50.000 0.00 0.00 0.00 3.72
163 164 3.133003 GCCATCCACTAGACTGTACACAT 59.867 47.826 0.00 0.00 0.00 3.21
205 206 1.250840 AAAGCCGCCTCCACCATTTC 61.251 55.000 0.00 0.00 0.00 2.17
219 220 3.578282 CACCATTTCCTAGGGCAGTTTTT 59.422 43.478 9.46 0.00 0.00 1.94
220 221 3.832490 ACCATTTCCTAGGGCAGTTTTTC 59.168 43.478 9.46 0.00 0.00 2.29
235 236 4.218417 CAGTTTTTCATCCCGGAATTGTCT 59.782 41.667 0.73 0.00 0.00 3.41
240 241 3.643237 TCATCCCGGAATTGTCTAGAGT 58.357 45.455 0.73 0.00 0.00 3.24
251 252 6.351881 GGAATTGTCTAGAGTACACCCAATCA 60.352 42.308 0.00 0.00 0.00 2.57
271 272 4.122046 TCAAGTGCATGGATCATTAGTCG 58.878 43.478 0.00 0.00 0.00 4.18
274 275 4.375272 AGTGCATGGATCATTAGTCGAAG 58.625 43.478 0.00 0.00 0.00 3.79
278 279 4.811024 GCATGGATCATTAGTCGAAGAACA 59.189 41.667 0.00 0.00 39.69 3.18
279 280 5.050499 GCATGGATCATTAGTCGAAGAACAG 60.050 44.000 0.00 0.00 39.69 3.16
280 281 5.914898 TGGATCATTAGTCGAAGAACAGA 57.085 39.130 0.00 0.00 39.69 3.41
281 282 6.280855 TGGATCATTAGTCGAAGAACAGAA 57.719 37.500 0.00 0.00 39.69 3.02
282 283 6.697395 TGGATCATTAGTCGAAGAACAGAAA 58.303 36.000 0.00 0.00 39.69 2.52
283 284 7.331026 TGGATCATTAGTCGAAGAACAGAAAT 58.669 34.615 0.00 0.00 39.69 2.17
284 285 7.278646 TGGATCATTAGTCGAAGAACAGAAATG 59.721 37.037 0.00 0.00 39.69 2.32
285 286 6.408858 TCATTAGTCGAAGAACAGAAATGC 57.591 37.500 0.00 0.00 39.69 3.56
286 287 6.166279 TCATTAGTCGAAGAACAGAAATGCT 58.834 36.000 0.00 0.00 39.69 3.79
301 302 0.257039 ATGCTGAAGGGGTGATCCAC 59.743 55.000 0.00 0.00 37.22 4.02
307 308 0.405585 AAGGGGTGATCCACAGGTTG 59.594 55.000 0.00 0.00 40.18 3.77
353 354 4.565531 GCTGTGCAAGGCATCAAC 57.434 55.556 7.20 0.00 41.91 3.18
384 385 5.214293 GGATAAAGGTCTAGGTTACCCTCA 58.786 45.833 0.00 0.00 41.45 3.86
400 401 9.847224 GGTTACCCTCATTTTCTCATTCTTATA 57.153 33.333 0.00 0.00 0.00 0.98
428 429 8.174733 AGTTAATTGGCCTATCTTTCATGATG 57.825 34.615 3.32 0.00 0.00 3.07
429 430 7.781693 AGTTAATTGGCCTATCTTTCATGATGT 59.218 33.333 3.32 0.00 0.00 3.06
430 431 6.401047 AATTGGCCTATCTTTCATGATGTG 57.599 37.500 3.32 0.00 0.00 3.21
567 568 4.677182 AGAGTTTGCATTGTTTATCCCCT 58.323 39.130 0.00 0.00 0.00 4.79
600 601 4.522789 AGTTCGTTACATGGGAATTGCTTT 59.477 37.500 0.00 0.00 0.00 3.51
714 985 8.755696 AAGCTTGAATTTCGTATTTTATGCAA 57.244 26.923 0.00 0.00 0.00 4.08
717 988 8.594687 GCTTGAATTTCGTATTTTATGCAACAT 58.405 29.630 0.00 0.00 0.00 2.71
724 996 7.566760 TCGTATTTTATGCAACATCCAATCT 57.433 32.000 0.00 0.00 0.00 2.40
725 997 8.669946 TCGTATTTTATGCAACATCCAATCTA 57.330 30.769 0.00 0.00 0.00 1.98
739 1011 6.094048 ACATCCAATCTAGACCAAAATGTTCG 59.906 38.462 0.00 0.00 0.00 3.95
742 1014 2.343101 TCTAGACCAAAATGTTCGCCG 58.657 47.619 0.00 0.00 0.00 6.46
743 1015 2.028839 TCTAGACCAAAATGTTCGCCGA 60.029 45.455 0.00 0.00 0.00 5.54
744 1016 1.600023 AGACCAAAATGTTCGCCGAA 58.400 45.000 0.00 0.00 0.00 4.30
747 1019 1.883275 ACCAAAATGTTCGCCGAATGA 59.117 42.857 1.55 0.00 0.00 2.57
748 1020 2.250188 CCAAAATGTTCGCCGAATGAC 58.750 47.619 1.55 0.00 0.00 3.06
749 1021 2.351253 CCAAAATGTTCGCCGAATGACA 60.351 45.455 1.55 0.00 0.00 3.58
750 1022 3.304257 CAAAATGTTCGCCGAATGACAA 58.696 40.909 1.55 0.00 0.00 3.18
751 1023 3.634568 AAATGTTCGCCGAATGACAAA 57.365 38.095 1.55 0.00 0.00 2.83
754 1026 3.196007 TGTTCGCCGAATGACAAATTC 57.804 42.857 1.55 0.00 0.00 2.17
755 1027 2.811431 TGTTCGCCGAATGACAAATTCT 59.189 40.909 1.55 0.00 0.00 2.40
812 1085 2.585247 GCCGGCCGCAGTACTTAG 60.585 66.667 22.85 3.31 37.47 2.18
845 1118 2.668212 CACGCCACCATGAACCGT 60.668 61.111 0.00 0.00 0.00 4.83
927 1209 1.167851 CTGCCTTTTCTCGCATTCCA 58.832 50.000 0.00 0.00 33.78 3.53
941 1223 1.200020 CATTCCACGGCCAAGAGAAAC 59.800 52.381 2.24 0.00 0.00 2.78
942 1224 0.882927 TTCCACGGCCAAGAGAAACG 60.883 55.000 2.24 0.00 0.00 3.60
943 1225 2.325082 CCACGGCCAAGAGAAACGG 61.325 63.158 2.24 0.00 0.00 4.44
944 1226 1.301401 CACGGCCAAGAGAAACGGA 60.301 57.895 2.24 0.00 0.00 4.69
945 1227 0.882927 CACGGCCAAGAGAAACGGAA 60.883 55.000 2.24 0.00 0.00 4.30
946 1228 0.883370 ACGGCCAAGAGAAACGGAAC 60.883 55.000 2.24 0.00 0.00 3.62
1321 1603 2.250190 GTGCGCGCCGTTTTTACT 59.750 55.556 30.77 0.00 0.00 2.24
1322 1604 1.492436 GTGCGCGCCGTTTTTACTA 59.508 52.632 30.77 1.61 0.00 1.82
1323 1605 0.786806 GTGCGCGCCGTTTTTACTAC 60.787 55.000 30.77 12.14 0.00 2.73
1324 1606 0.945265 TGCGCGCCGTTTTTACTACT 60.945 50.000 30.77 0.00 0.00 2.57
1325 1607 0.991344 GCGCGCCGTTTTTACTACTA 59.009 50.000 23.24 0.00 0.00 1.82
1326 1608 1.266550 GCGCGCCGTTTTTACTACTAC 60.267 52.381 23.24 0.00 0.00 2.73
1327 1609 2.253603 CGCGCCGTTTTTACTACTACT 58.746 47.619 0.00 0.00 0.00 2.57
1350 1632 3.194755 ACCGTTGCTTGTTCTTTTCCTTT 59.805 39.130 0.00 0.00 0.00 3.11
1351 1633 3.551485 CCGTTGCTTGTTCTTTTCCTTTG 59.449 43.478 0.00 0.00 0.00 2.77
1356 1638 3.798878 GCTTGTTCTTTTCCTTTGTGCTC 59.201 43.478 0.00 0.00 0.00 4.26
1397 1679 0.250814 TACCGGGCGTGTGGAATTTT 60.251 50.000 6.32 0.00 0.00 1.82
1557 1839 2.550180 GGGAAGCTGTGAGTTTCTCAAC 59.450 50.000 0.88 0.00 42.46 3.18
1563 1846 3.873952 GCTGTGAGTTTCTCAACTTCACT 59.126 43.478 0.88 0.00 43.79 3.41
1569 1852 5.964941 TGAGTTTCTCAACTTCACTCCGAAG 60.965 44.000 0.36 0.36 43.79 3.79
1584 1867 3.629858 GAAGTTCATTCGCCCATGC 57.370 52.632 0.00 0.00 0.00 4.06
1590 1874 0.746063 TCATTCGCCCATGCCAATTC 59.254 50.000 0.00 0.00 0.00 2.17
1595 1879 1.075748 GCCCATGCCAATTCCCTCT 60.076 57.895 0.00 0.00 0.00 3.69
1596 1880 0.185901 GCCCATGCCAATTCCCTCTA 59.814 55.000 0.00 0.00 0.00 2.43
1601 1885 3.294214 CATGCCAATTCCCTCTAGCTTT 58.706 45.455 0.00 0.00 0.00 3.51
1605 1889 3.119352 GCCAATTCCCTCTAGCTTTTGTG 60.119 47.826 0.00 0.00 0.00 3.33
1606 1890 3.445096 CCAATTCCCTCTAGCTTTTGTGG 59.555 47.826 0.00 0.00 0.00 4.17
1607 1891 2.879103 TTCCCTCTAGCTTTTGTGGG 57.121 50.000 12.27 12.27 38.09 4.61
1608 1892 0.328258 TCCCTCTAGCTTTTGTGGGC 59.672 55.000 13.17 0.00 37.03 5.36
1609 1893 0.038166 CCCTCTAGCTTTTGTGGGCA 59.962 55.000 0.00 0.00 31.42 5.36
1610 1894 1.341383 CCCTCTAGCTTTTGTGGGCAT 60.341 52.381 0.00 0.00 31.42 4.40
1611 1895 2.450476 CCTCTAGCTTTTGTGGGCATT 58.550 47.619 0.00 0.00 0.00 3.56
1612 1896 3.620488 CCTCTAGCTTTTGTGGGCATTA 58.380 45.455 0.00 0.00 0.00 1.90
1613 1897 4.210331 CCTCTAGCTTTTGTGGGCATTAT 58.790 43.478 0.00 0.00 0.00 1.28
1614 1898 5.376625 CCTCTAGCTTTTGTGGGCATTATA 58.623 41.667 0.00 0.00 0.00 0.98
1615 1899 5.827797 CCTCTAGCTTTTGTGGGCATTATAA 59.172 40.000 0.00 0.00 0.00 0.98
1616 1900 6.016777 CCTCTAGCTTTTGTGGGCATTATAAG 60.017 42.308 0.00 0.00 0.00 1.73
1617 1901 6.658849 TCTAGCTTTTGTGGGCATTATAAGA 58.341 36.000 0.00 0.00 0.00 2.10
1618 1902 7.290061 TCTAGCTTTTGTGGGCATTATAAGAT 58.710 34.615 0.00 0.00 0.00 2.40
1619 1903 8.436778 TCTAGCTTTTGTGGGCATTATAAGATA 58.563 33.333 0.00 0.00 0.00 1.98
1620 1904 7.277174 AGCTTTTGTGGGCATTATAAGATAC 57.723 36.000 0.00 0.00 0.00 2.24
1621 1905 7.062957 AGCTTTTGTGGGCATTATAAGATACT 58.937 34.615 0.00 0.00 0.00 2.12
1622 1906 7.229506 AGCTTTTGTGGGCATTATAAGATACTC 59.770 37.037 0.00 0.00 0.00 2.59
1623 1907 7.522236 GCTTTTGTGGGCATTATAAGATACTCC 60.522 40.741 0.00 0.00 0.00 3.85
1624 1908 5.499004 TGTGGGCATTATAAGATACTCCC 57.501 43.478 0.00 0.00 0.00 4.30
1625 1909 5.162637 TGTGGGCATTATAAGATACTCCCT 58.837 41.667 0.00 0.00 33.77 4.20
1626 1910 5.248477 TGTGGGCATTATAAGATACTCCCTC 59.752 44.000 0.00 0.00 33.77 4.30
1627 1911 4.783227 TGGGCATTATAAGATACTCCCTCC 59.217 45.833 0.00 0.00 33.77 4.30
1628 1912 4.141914 GGGCATTATAAGATACTCCCTCCG 60.142 50.000 0.00 0.00 0.00 4.63
1629 1913 4.466726 GGCATTATAAGATACTCCCTCCGT 59.533 45.833 0.00 0.00 0.00 4.69
1630 1914 5.046520 GGCATTATAAGATACTCCCTCCGTT 60.047 44.000 0.00 0.00 0.00 4.44
1631 1915 6.465084 GCATTATAAGATACTCCCTCCGTTT 58.535 40.000 0.00 0.00 0.00 3.60
1632 1916 6.590677 GCATTATAAGATACTCCCTCCGTTTC 59.409 42.308 0.00 0.00 0.00 2.78
1633 1917 4.850347 ATAAGATACTCCCTCCGTTTCG 57.150 45.455 0.00 0.00 0.00 3.46
1634 1918 2.431954 AGATACTCCCTCCGTTTCGA 57.568 50.000 0.00 0.00 0.00 3.71
1635 1919 2.731572 AGATACTCCCTCCGTTTCGAA 58.268 47.619 0.00 0.00 0.00 3.71
1636 1920 3.297736 AGATACTCCCTCCGTTTCGAAT 58.702 45.455 0.00 0.00 0.00 3.34
1637 1921 3.705072 AGATACTCCCTCCGTTTCGAATT 59.295 43.478 0.00 0.00 0.00 2.17
1638 1922 4.891756 AGATACTCCCTCCGTTTCGAATTA 59.108 41.667 0.00 0.00 0.00 1.40
1639 1923 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
1640 1924 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
1641 1925 3.260128 ACTCCCTCCGTTTCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
1642 1926 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
1643 1927 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
1644 1928 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
1645 1929 3.060363 CCTCCGTTTCGAATTACTTGTCG 59.940 47.826 0.00 0.00 38.62 4.35
1646 1930 2.409378 TCCGTTTCGAATTACTTGTCGC 59.591 45.455 0.00 0.00 37.19 5.19
1647 1931 2.156117 CCGTTTCGAATTACTTGTCGCA 59.844 45.455 0.00 0.00 37.19 5.10
1648 1932 3.395671 CGTTTCGAATTACTTGTCGCAG 58.604 45.455 0.00 0.00 37.19 5.18
1649 1933 3.720920 CGTTTCGAATTACTTGTCGCAGG 60.721 47.826 0.00 0.00 37.19 4.85
1650 1934 2.736144 TCGAATTACTTGTCGCAGGT 57.264 45.000 0.00 0.91 37.19 4.00
1651 1935 3.853831 TCGAATTACTTGTCGCAGGTA 57.146 42.857 0.00 0.00 37.19 3.08
1652 1936 4.380841 TCGAATTACTTGTCGCAGGTAT 57.619 40.909 3.46 0.00 37.19 2.73
1653 1937 4.109766 TCGAATTACTTGTCGCAGGTATG 58.890 43.478 3.46 0.00 37.19 2.39
1654 1938 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
1655 1939 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
1656 1940 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
1657 1941 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
1658 1942 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
1659 1943 1.935873 CTTGTCGCAGGTATGGATGTG 59.064 52.381 0.00 0.00 0.00 3.21
1660 1944 0.901827 TGTCGCAGGTATGGATGTGT 59.098 50.000 0.00 0.00 0.00 3.72
1661 1945 1.134818 TGTCGCAGGTATGGATGTGTC 60.135 52.381 0.00 0.00 0.00 3.67
1662 1946 1.137086 GTCGCAGGTATGGATGTGTCT 59.863 52.381 0.00 0.00 0.00 3.41
1663 1947 2.361119 GTCGCAGGTATGGATGTGTCTA 59.639 50.000 0.00 0.00 0.00 2.59
1664 1948 2.623416 TCGCAGGTATGGATGTGTCTAG 59.377 50.000 0.00 0.00 0.00 2.43
1665 1949 2.623416 CGCAGGTATGGATGTGTCTAGA 59.377 50.000 0.00 0.00 0.00 2.43
1666 1950 3.256879 CGCAGGTATGGATGTGTCTAGAT 59.743 47.826 0.00 0.00 0.00 1.98
1667 1951 4.564041 GCAGGTATGGATGTGTCTAGATG 58.436 47.826 0.00 0.00 0.00 2.90
1668 1952 4.039730 GCAGGTATGGATGTGTCTAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
1669 1953 5.243954 GCAGGTATGGATGTGTCTAGATGTA 59.756 44.000 0.00 0.00 0.00 2.29
1670 1954 6.071108 GCAGGTATGGATGTGTCTAGATGTAT 60.071 42.308 0.00 0.00 0.00 2.29
1671 1955 7.526192 GCAGGTATGGATGTGTCTAGATGTATT 60.526 40.741 0.00 0.00 0.00 1.89
1672 1956 8.370940 CAGGTATGGATGTGTCTAGATGTATTT 58.629 37.037 0.00 0.00 0.00 1.40
1673 1957 8.938883 AGGTATGGATGTGTCTAGATGTATTTT 58.061 33.333 0.00 0.00 0.00 1.82
1678 1962 9.817809 TGGATGTGTCTAGATGTATTTTAGTTC 57.182 33.333 0.00 0.00 0.00 3.01
1679 1963 9.817809 GGATGTGTCTAGATGTATTTTAGTTCA 57.182 33.333 0.00 0.00 0.00 3.18
1696 1980 7.792374 TTAGTTCAGATACATCCATTTCTGC 57.208 36.000 0.00 0.00 36.41 4.26
1697 1981 4.813161 AGTTCAGATACATCCATTTCTGCG 59.187 41.667 0.00 0.00 36.41 5.18
1698 1982 4.670896 TCAGATACATCCATTTCTGCGA 57.329 40.909 0.00 0.00 36.41 5.10
1699 1983 4.371786 TCAGATACATCCATTTCTGCGAC 58.628 43.478 0.00 0.00 36.41 5.19
1700 1984 3.183172 CAGATACATCCATTTCTGCGACG 59.817 47.826 0.00 0.00 30.23 5.12
1701 1985 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1702 1986 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1703 1987 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1704 1988 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1705 1989 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1706 1990 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1707 1991 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1708 1992 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
1709 1993 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1710 1994 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
1711 1995 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
1712 1996 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
1713 1997 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
1714 1998 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1715 1999 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
1716 2000 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
1717 2001 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1718 2002 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1722 2006 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1724 2008 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1725 2009 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
1731 2015 2.416680 ACGGAGGGAGTAGTACTGTC 57.583 55.000 7.76 1.93 0.00 3.51
1744 2028 5.652891 AGTAGTACTGTCTGTAGTTGGATGG 59.347 44.000 5.39 0.00 36.33 3.51
1747 2031 3.239449 ACTGTCTGTAGTTGGATGGTGA 58.761 45.455 0.00 0.00 0.00 4.02
1752 2036 4.009675 TCTGTAGTTGGATGGTGAAATGC 58.990 43.478 0.00 0.00 0.00 3.56
1753 2037 4.012374 CTGTAGTTGGATGGTGAAATGCT 58.988 43.478 0.00 0.00 0.00 3.79
1754 2038 4.406456 TGTAGTTGGATGGTGAAATGCTT 58.594 39.130 0.00 0.00 0.00 3.91
1755 2039 5.565509 TGTAGTTGGATGGTGAAATGCTTA 58.434 37.500 0.00 0.00 0.00 3.09
1756 2040 6.186957 TGTAGTTGGATGGTGAAATGCTTAT 58.813 36.000 0.00 0.00 0.00 1.73
1757 2041 6.663093 TGTAGTTGGATGGTGAAATGCTTATT 59.337 34.615 0.00 0.00 0.00 1.40
1758 2042 5.969423 AGTTGGATGGTGAAATGCTTATTG 58.031 37.500 0.00 0.00 0.00 1.90
1759 2043 5.716228 AGTTGGATGGTGAAATGCTTATTGA 59.284 36.000 0.00 0.00 0.00 2.57
1798 2082 2.825086 ACAGTTCGTGTGTTGCTTTC 57.175 45.000 0.00 0.00 38.28 2.62
1808 2092 4.664139 CGTGTGTTGCTTTCGTTCTATGAG 60.664 45.833 0.00 0.00 0.00 2.90
1837 2121 7.633789 AGATTGTTGTCTTATAGTTGGATGGT 58.366 34.615 0.00 0.00 0.00 3.55
1838 2122 8.768397 AGATTGTTGTCTTATAGTTGGATGGTA 58.232 33.333 0.00 0.00 0.00 3.25
1839 2123 8.964476 ATTGTTGTCTTATAGTTGGATGGTAG 57.036 34.615 0.00 0.00 0.00 3.18
1840 2124 7.727578 TGTTGTCTTATAGTTGGATGGTAGA 57.272 36.000 0.00 0.00 0.00 2.59
1841 2125 8.141298 TGTTGTCTTATAGTTGGATGGTAGAA 57.859 34.615 0.00 0.00 0.00 2.10
1957 2247 7.482654 TCATTTTACTTGAATGAGCGATAGG 57.517 36.000 0.00 0.00 38.29 2.57
2055 2349 3.815809 TCCCCTTACTAAAATGCATCCG 58.184 45.455 0.00 0.00 0.00 4.18
2123 2417 7.330900 CAGATCATCACCTGCTTATTTTCTT 57.669 36.000 0.00 0.00 0.00 2.52
2265 2559 3.671928 GTGCTTTGAATGTTGACTGCATC 59.328 43.478 0.00 0.00 0.00 3.91
2299 2593 5.951747 TGGATAAAATATCCCTATGCCTTGC 59.048 40.000 12.63 0.00 37.40 4.01
2416 2710 9.295825 AGTATTTTTGTCATTTCACCAGATGTA 57.704 29.630 0.00 0.00 0.00 2.29
2422 2716 7.609760 TGTCATTTCACCAGATGTAATGTAC 57.390 36.000 6.27 0.00 43.21 2.90
2465 2759 7.573096 GCATTATTGGTTCCTATATTCACACCG 60.573 40.741 0.00 0.00 0.00 4.94
2546 2840 5.989249 TGTTTTCTCTTCACATTGACATCG 58.011 37.500 0.00 0.00 0.00 3.84
2548 2842 3.317603 TCTCTTCACATTGACATCGCA 57.682 42.857 0.00 0.00 0.00 5.10
2588 2882 8.612619 CATTTCACCCAATGTTATGTACTACTC 58.387 37.037 0.00 0.00 30.60 2.59
2594 2888 5.509163 CCAATGTTATGTACTACTCCCTCCG 60.509 48.000 0.00 0.00 0.00 4.63
2598 2892 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
2599 2893 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2600 2894 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
2601 2895 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2602 2896 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2606 2900 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2607 2901 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2609 2903 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2610 2904 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2612 2906 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2613 2907 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2616 2910 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2617 2911 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2618 2912 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2620 2914 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2621 2915 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2622 2916 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2651 3141 5.711036 ACCTCTGTTTCTAGATGTAAGACGT 59.289 40.000 0.00 0.00 0.00 4.34
2652 3142 6.208994 ACCTCTGTTTCTAGATGTAAGACGTT 59.791 38.462 0.00 0.00 0.00 3.99
2653 3143 7.091443 CCTCTGTTTCTAGATGTAAGACGTTT 58.909 38.462 0.00 0.00 0.00 3.60
2654 3144 7.599245 CCTCTGTTTCTAGATGTAAGACGTTTT 59.401 37.037 0.00 0.00 0.00 2.43
2655 3145 8.294341 TCTGTTTCTAGATGTAAGACGTTTTG 57.706 34.615 0.83 0.00 0.00 2.44
2656 3146 7.384115 TCTGTTTCTAGATGTAAGACGTTTTGG 59.616 37.037 0.83 0.00 0.00 3.28
2657 3147 6.073440 TGTTTCTAGATGTAAGACGTTTTGGC 60.073 38.462 0.83 0.00 0.00 4.52
2658 3148 5.142061 TCTAGATGTAAGACGTTTTGGCA 57.858 39.130 0.83 1.32 0.00 4.92
2659 3149 5.168569 TCTAGATGTAAGACGTTTTGGCAG 58.831 41.667 0.83 0.00 0.00 4.85
2720 3210 7.989947 ATTTAGGAACAGAGGGTGTAGAATA 57.010 36.000 0.00 0.00 39.03 1.75
2721 3211 7.989947 TTTAGGAACAGAGGGTGTAGAATAT 57.010 36.000 0.00 0.00 39.03 1.28
2722 3212 9.670442 ATTTAGGAACAGAGGGTGTAGAATATA 57.330 33.333 0.00 0.00 39.03 0.86
2723 3213 9.670442 TTTAGGAACAGAGGGTGTAGAATATAT 57.330 33.333 0.00 0.00 39.03 0.86
2724 3214 7.784470 AGGAACAGAGGGTGTAGAATATATC 57.216 40.000 0.00 0.00 39.03 1.63
2725 3215 6.726764 AGGAACAGAGGGTGTAGAATATATCC 59.273 42.308 0.00 0.00 39.03 2.59
2726 3216 6.497259 GGAACAGAGGGTGTAGAATATATCCA 59.503 42.308 0.00 0.00 35.04 3.41
2727 3217 7.016268 GGAACAGAGGGTGTAGAATATATCCAA 59.984 40.741 0.00 0.00 35.04 3.53
2730 3220 9.615660 ACAGAGGGTGTAGAATATATCCAATTA 57.384 33.333 0.00 0.00 35.04 1.40
2764 3254 8.506168 TTGATTATTATATTCGCCCCTGAATC 57.494 34.615 0.00 0.00 39.27 2.52
2795 3285 6.769608 TGTGTGATACAATATCATCGAAGC 57.230 37.500 2.04 0.00 36.06 3.86
2805 3295 6.319658 ACAATATCATCGAAGCATTCCAGTTT 59.680 34.615 0.00 0.00 43.81 2.66
2824 3314 6.238676 CCAGTTTTGAAGATATGAGCTGATGG 60.239 42.308 0.00 0.00 0.00 3.51
2852 3342 1.885887 GTTTGGTGCTAGGTTGATGCA 59.114 47.619 0.00 0.00 0.00 3.96
2859 3349 5.105797 TGGTGCTAGGTTGATGCAATTTAAG 60.106 40.000 0.00 0.00 38.50 1.85
2866 3356 4.622740 GGTTGATGCAATTTAAGTGAGCAC 59.377 41.667 0.00 0.00 38.12 4.40
2885 3378 6.978343 AGCACGTATCTGCTTAACATTTTA 57.022 33.333 0.00 0.00 45.64 1.52
2983 3476 4.526970 TGCAAAAACCAAAAATTAGCCCA 58.473 34.783 0.00 0.00 0.00 5.36
3130 3623 0.872021 CCGTAGTTCTCCTGATGCGC 60.872 60.000 0.00 0.00 0.00 6.09
3139 3632 0.179100 TCCTGATGCGCAAGTAGAGC 60.179 55.000 17.11 0.00 44.03 4.09
3222 3790 6.655078 AGAAAAATGTGTATCCAGCTTGTT 57.345 33.333 0.00 0.00 0.00 2.83
3267 3835 5.435686 TGTATTCTTGTCTTGCAGGGTAT 57.564 39.130 0.00 0.00 0.00 2.73
3268 3836 6.553953 TGTATTCTTGTCTTGCAGGGTATA 57.446 37.500 0.00 0.00 0.00 1.47
3273 3841 4.649674 TCTTGTCTTGCAGGGTATACTAGG 59.350 45.833 2.25 0.00 0.00 3.02
3281 3849 5.647230 TGCAGGGTATACTAGGTAGCAATA 58.353 41.667 2.25 0.00 0.00 1.90
3297 3865 9.528489 AGGTAGCAATAATTTTGGAAGTTCTTA 57.472 29.630 2.25 0.00 0.00 2.10
3320 3888 3.746940 TGTTTTCTTCCGGACCTTAAGG 58.253 45.455 20.42 20.42 42.17 2.69
3419 4098 4.082245 GGGTCACTATTCAAAACACATGGG 60.082 45.833 0.00 0.00 0.00 4.00
3558 4939 5.407407 AGTATACTACATAGCACATGGGC 57.593 43.478 13.49 13.49 0.00 5.36
3567 4948 0.828762 AGCACATGGGCACACACAAT 60.829 50.000 24.51 0.00 35.83 2.71
3568 4949 0.388907 GCACATGGGCACACACAATC 60.389 55.000 16.99 0.00 0.00 2.67
3583 4968 4.005650 ACACAATCTTCACCAGCATACAG 58.994 43.478 0.00 0.00 0.00 2.74
3611 4996 4.237349 ACGTGCTAAAATTTGAACCCTG 57.763 40.909 0.00 0.00 0.00 4.45
3621 5006 3.749665 TTTGAACCCTGCAGAAATTGG 57.250 42.857 17.39 10.04 0.00 3.16
3625 5010 0.471591 ACCCTGCAGAAATTGGGCAA 60.472 50.000 17.39 0.00 43.25 4.52
3678 5063 6.738114 GCTTTCAGCAACCATATTAGCATAA 58.262 36.000 0.00 0.00 41.89 1.90
3684 5069 7.442364 TCAGCAACCATATTAGCATAAGAACTC 59.558 37.037 0.00 0.00 0.00 3.01
3701 5329 7.951347 AAGAACTCCATATCAGCAAGATTTT 57.049 32.000 0.00 0.00 38.19 1.82
3749 5379 6.280643 CAATGTTGGATCGTGAGGACTATTA 58.719 40.000 0.00 0.00 0.00 0.98
3760 5398 5.514204 CGTGAGGACTATTACCTTTACAACG 59.486 44.000 0.00 0.00 37.93 4.10
3922 5561 8.950210 AGAACACAAATTAATAGATCTGGTGTG 58.050 33.333 5.18 10.63 37.08 3.82
4044 5683 1.082679 CCAGACTCAGCTGATGCACG 61.083 60.000 18.63 7.67 42.74 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.202651 CGGTCCGATGATAGGCCTTTT 60.203 52.381 12.58 0.00 0.00 2.27
56 57 0.393077 CGGTCCGATGATAGGCCTTT 59.607 55.000 12.58 1.34 0.00 3.11
63 64 4.525100 TGGTATTGAATCGGTCCGATGATA 59.475 41.667 27.03 20.16 46.30 2.15
73 74 2.158900 AGCTGAGGTGGTATTGAATCGG 60.159 50.000 0.00 0.00 0.00 4.18
76 77 3.455910 TGCTAGCTGAGGTGGTATTGAAT 59.544 43.478 17.23 0.00 0.00 2.57
205 206 2.379005 GGGATGAAAAACTGCCCTAGG 58.621 52.381 0.06 0.06 35.86 3.02
219 220 3.643237 ACTCTAGACAATTCCGGGATGA 58.357 45.455 0.00 0.00 0.00 2.92
220 221 4.341235 TGTACTCTAGACAATTCCGGGATG 59.659 45.833 0.00 0.42 0.00 3.51
235 236 3.580895 TGCACTTGATTGGGTGTACTCTA 59.419 43.478 0.00 0.00 36.03 2.43
240 241 2.040947 TCCATGCACTTGATTGGGTGTA 59.959 45.455 2.04 0.00 36.03 2.90
251 252 4.406648 TCGACTAATGATCCATGCACTT 57.593 40.909 0.00 0.00 0.00 3.16
271 272 3.192212 CCCCTTCAGCATTTCTGTTCTTC 59.808 47.826 0.00 0.00 43.32 2.87
274 275 2.229784 CACCCCTTCAGCATTTCTGTTC 59.770 50.000 0.00 0.00 43.32 3.18
278 279 2.357569 GGATCACCCCTTCAGCATTTCT 60.358 50.000 0.00 0.00 0.00 2.52
279 280 2.027385 GGATCACCCCTTCAGCATTTC 58.973 52.381 0.00 0.00 0.00 2.17
280 281 1.358787 TGGATCACCCCTTCAGCATTT 59.641 47.619 0.00 0.00 34.81 2.32
281 282 1.002069 TGGATCACCCCTTCAGCATT 58.998 50.000 0.00 0.00 34.81 3.56
282 283 0.257039 GTGGATCACCCCTTCAGCAT 59.743 55.000 0.00 0.00 34.81 3.79
283 284 1.133181 TGTGGATCACCCCTTCAGCA 61.133 55.000 0.00 0.00 32.73 4.41
284 285 0.393537 CTGTGGATCACCCCTTCAGC 60.394 60.000 0.00 0.00 32.73 4.26
285 286 0.254178 CCTGTGGATCACCCCTTCAG 59.746 60.000 0.00 0.00 32.73 3.02
286 287 0.475632 ACCTGTGGATCACCCCTTCA 60.476 55.000 0.00 0.00 32.73 3.02
287 288 0.698818 AACCTGTGGATCACCCCTTC 59.301 55.000 0.00 0.00 32.73 3.46
336 337 1.443194 CGTTGATGCCTTGCACAGC 60.443 57.895 0.06 0.06 43.04 4.40
348 349 2.550978 CTTTATCCGTGCCTCGTTGAT 58.449 47.619 0.00 0.00 37.94 2.57
353 354 0.460311 AGACCTTTATCCGTGCCTCG 59.540 55.000 0.00 0.00 39.52 4.63
400 401 9.866655 TCATGAAAGATAGGCCAATTAACTAAT 57.133 29.630 5.01 0.00 0.00 1.73
401 402 9.866655 ATCATGAAAGATAGGCCAATTAACTAA 57.133 29.630 5.01 0.00 0.00 2.24
529 530 7.648142 TGCAAACTCTTTTCTTACGAATCATT 58.352 30.769 0.00 0.00 0.00 2.57
535 536 6.371809 ACAATGCAAACTCTTTTCTTACGA 57.628 33.333 0.00 0.00 0.00 3.43
543 544 5.543790 AGGGGATAAACAATGCAAACTCTTT 59.456 36.000 0.00 0.00 0.00 2.52
567 568 9.451002 TTCCCATGTAACGAACTAAATATTTGA 57.549 29.630 11.05 0.00 0.00 2.69
600 601 8.443953 AAGTTGCCATAAAAGTAAATGCAAAA 57.556 26.923 0.00 0.00 0.00 2.44
636 637 4.219725 GGAATGGAAGGGTTTTCAATTCGA 59.780 41.667 9.66 0.00 38.92 3.71
714 985 6.094048 CGAACATTTTGGTCTAGATTGGATGT 59.906 38.462 0.00 1.19 30.24 3.06
717 988 4.394920 GCGAACATTTTGGTCTAGATTGGA 59.605 41.667 0.00 0.00 30.24 3.53
724 996 2.459060 TCGGCGAACATTTTGGTCTA 57.541 45.000 7.35 0.00 30.24 2.59
725 997 1.600023 TTCGGCGAACATTTTGGTCT 58.400 45.000 19.83 0.00 30.24 3.85
739 1011 2.682856 TGCCTAGAATTTGTCATTCGGC 59.317 45.455 0.00 6.56 36.06 5.54
742 1014 5.105063 GCCTTTGCCTAGAATTTGTCATTC 58.895 41.667 0.00 0.00 0.00 2.67
743 1015 4.527816 TGCCTTTGCCTAGAATTTGTCATT 59.472 37.500 0.00 0.00 36.33 2.57
744 1016 4.088634 TGCCTTTGCCTAGAATTTGTCAT 58.911 39.130 0.00 0.00 36.33 3.06
747 1019 2.232208 GCTGCCTTTGCCTAGAATTTGT 59.768 45.455 0.00 0.00 36.33 2.83
748 1020 2.417787 GGCTGCCTTTGCCTAGAATTTG 60.418 50.000 12.43 0.00 46.38 2.32
749 1021 1.827344 GGCTGCCTTTGCCTAGAATTT 59.173 47.619 12.43 0.00 46.38 1.82
750 1022 1.478631 GGCTGCCTTTGCCTAGAATT 58.521 50.000 12.43 0.00 46.38 2.17
751 1023 3.197664 GGCTGCCTTTGCCTAGAAT 57.802 52.632 12.43 0.00 46.38 2.40
845 1118 2.158813 GGGAATCTTGGCGTTGGAGATA 60.159 50.000 0.00 0.00 30.33 1.98
927 1209 0.883370 GTTCCGTTTCTCTTGGCCGT 60.883 55.000 0.00 0.00 0.00 5.68
942 1224 1.206610 GAGTAGAGTTTCGGGGGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
943 1225 1.135170 CGAGTAGAGTTTCGGGGGTTC 60.135 57.143 0.00 0.00 33.39 3.62
944 1226 0.893447 CGAGTAGAGTTTCGGGGGTT 59.107 55.000 0.00 0.00 33.39 4.11
945 1227 2.576298 CGAGTAGAGTTTCGGGGGT 58.424 57.895 0.00 0.00 33.39 4.95
1309 1591 3.786048 CGGTAGTAGTAGTAAAAACGGCG 59.214 47.826 4.80 4.80 0.00 6.46
1321 1603 5.458041 AAGAACAAGCAACGGTAGTAGTA 57.542 39.130 0.00 0.00 0.00 1.82
1322 1604 4.332428 AAGAACAAGCAACGGTAGTAGT 57.668 40.909 0.00 0.00 0.00 2.73
1323 1605 5.333875 GGAAAAGAACAAGCAACGGTAGTAG 60.334 44.000 0.00 0.00 0.00 2.57
1324 1606 4.512571 GGAAAAGAACAAGCAACGGTAGTA 59.487 41.667 0.00 0.00 0.00 1.82
1325 1607 3.314357 GGAAAAGAACAAGCAACGGTAGT 59.686 43.478 0.00 0.00 0.00 2.73
1326 1608 3.564225 AGGAAAAGAACAAGCAACGGTAG 59.436 43.478 0.00 0.00 0.00 3.18
1327 1609 3.547746 AGGAAAAGAACAAGCAACGGTA 58.452 40.909 0.00 0.00 0.00 4.02
1350 1632 2.355363 CGAACGAACGGGAGCACA 60.355 61.111 0.00 0.00 0.00 4.57
1351 1633 3.774702 GCGAACGAACGGGAGCAC 61.775 66.667 0.00 0.00 0.00 4.40
1356 1638 2.732094 AACGAGCGAACGAACGGG 60.732 61.111 8.50 0.00 37.03 5.28
1569 1852 0.461135 ATTGGCATGGGCGAATGAAC 59.539 50.000 0.00 0.00 45.22 3.18
1577 1860 0.185901 TAGAGGGAATTGGCATGGGC 59.814 55.000 0.00 0.00 40.13 5.36
1579 1862 1.144503 AGCTAGAGGGAATTGGCATGG 59.855 52.381 0.00 0.00 0.00 3.66
1584 1867 3.445096 CCACAAAAGCTAGAGGGAATTGG 59.555 47.826 0.00 0.00 0.00 3.16
1590 1874 0.038166 TGCCCACAAAAGCTAGAGGG 59.962 55.000 10.59 10.59 38.51 4.30
1595 1879 8.217799 AGTATCTTATAATGCCCACAAAAGCTA 58.782 33.333 0.00 0.00 0.00 3.32
1596 1880 7.062957 AGTATCTTATAATGCCCACAAAAGCT 58.937 34.615 0.00 0.00 0.00 3.74
1601 1885 5.610982 AGGGAGTATCTTATAATGCCCACAA 59.389 40.000 0.00 0.00 36.79 3.33
1605 1889 4.141914 CGGAGGGAGTATCTTATAATGCCC 60.142 50.000 1.92 0.00 33.73 5.36
1606 1890 4.466726 ACGGAGGGAGTATCTTATAATGCC 59.533 45.833 0.00 0.00 33.73 4.40
1607 1891 5.662674 ACGGAGGGAGTATCTTATAATGC 57.337 43.478 0.00 0.00 33.73 3.56
1608 1892 6.807230 CGAAACGGAGGGAGTATCTTATAATG 59.193 42.308 0.00 0.00 33.73 1.90
1609 1893 6.718454 TCGAAACGGAGGGAGTATCTTATAAT 59.282 38.462 0.00 0.00 33.73 1.28
1610 1894 6.064060 TCGAAACGGAGGGAGTATCTTATAA 58.936 40.000 0.00 0.00 33.73 0.98
1611 1895 5.624159 TCGAAACGGAGGGAGTATCTTATA 58.376 41.667 0.00 0.00 33.73 0.98
1612 1896 4.467769 TCGAAACGGAGGGAGTATCTTAT 58.532 43.478 0.00 0.00 33.73 1.73
1613 1897 3.889815 TCGAAACGGAGGGAGTATCTTA 58.110 45.455 0.00 0.00 33.73 2.10
1614 1898 2.731572 TCGAAACGGAGGGAGTATCTT 58.268 47.619 0.00 0.00 33.73 2.40
1615 1899 2.431954 TCGAAACGGAGGGAGTATCT 57.568 50.000 0.00 0.00 33.73 1.98
1616 1900 3.729862 ATTCGAAACGGAGGGAGTATC 57.270 47.619 0.00 0.00 0.00 2.24
1617 1901 4.648307 AGTAATTCGAAACGGAGGGAGTAT 59.352 41.667 0.00 0.00 0.00 2.12
1618 1902 4.019174 AGTAATTCGAAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
1619 1903 2.830321 AGTAATTCGAAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
1620 1904 3.521947 AGTAATTCGAAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
1621 1905 3.007182 ACAAGTAATTCGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
1622 1906 3.332034 ACAAGTAATTCGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
1623 1907 3.060363 CGACAAGTAATTCGAAACGGAGG 59.940 47.826 0.00 0.00 37.43 4.30
1624 1908 3.481467 GCGACAAGTAATTCGAAACGGAG 60.481 47.826 0.00 0.00 37.43 4.63
1625 1909 2.409378 GCGACAAGTAATTCGAAACGGA 59.591 45.455 0.00 0.00 37.43 4.69
1626 1910 2.156117 TGCGACAAGTAATTCGAAACGG 59.844 45.455 0.00 0.00 37.43 4.44
1627 1911 3.395671 CTGCGACAAGTAATTCGAAACG 58.604 45.455 0.00 0.09 37.43 3.60
1628 1912 3.185797 ACCTGCGACAAGTAATTCGAAAC 59.814 43.478 0.00 0.00 37.43 2.78
1629 1913 3.395639 ACCTGCGACAAGTAATTCGAAA 58.604 40.909 0.00 0.00 37.43 3.46
1630 1914 3.034721 ACCTGCGACAAGTAATTCGAA 57.965 42.857 0.00 0.00 37.43 3.71
1631 1915 2.736144 ACCTGCGACAAGTAATTCGA 57.264 45.000 0.00 0.00 37.43 3.71
1632 1916 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
1633 1917 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
1634 1918 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
1635 1919 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
1636 1920 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
1637 1921 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
1638 1922 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
1639 1923 1.935873 CACATCCATACCTGCGACAAG 59.064 52.381 0.00 0.00 0.00 3.16
1640 1924 1.277842 ACACATCCATACCTGCGACAA 59.722 47.619 0.00 0.00 0.00 3.18
1641 1925 0.901827 ACACATCCATACCTGCGACA 59.098 50.000 0.00 0.00 0.00 4.35
1642 1926 1.137086 AGACACATCCATACCTGCGAC 59.863 52.381 0.00 0.00 0.00 5.19
1643 1927 1.485124 AGACACATCCATACCTGCGA 58.515 50.000 0.00 0.00 0.00 5.10
1644 1928 2.623416 TCTAGACACATCCATACCTGCG 59.377 50.000 0.00 0.00 0.00 5.18
1645 1929 4.039730 ACATCTAGACACATCCATACCTGC 59.960 45.833 0.00 0.00 0.00 4.85
1646 1930 5.798125 ACATCTAGACACATCCATACCTG 57.202 43.478 0.00 0.00 0.00 4.00
1647 1931 8.497910 AAATACATCTAGACACATCCATACCT 57.502 34.615 0.00 0.00 0.00 3.08
1652 1936 9.817809 GAACTAAAATACATCTAGACACATCCA 57.182 33.333 0.00 0.00 0.00 3.41
1653 1937 9.817809 TGAACTAAAATACATCTAGACACATCC 57.182 33.333 0.00 0.00 0.00 3.51
1670 1954 8.677300 GCAGAAATGGATGTATCTGAACTAAAA 58.323 33.333 5.85 0.00 41.38 1.52
1671 1955 7.011389 CGCAGAAATGGATGTATCTGAACTAAA 59.989 37.037 5.85 0.00 41.38 1.85
1672 1956 6.479990 CGCAGAAATGGATGTATCTGAACTAA 59.520 38.462 5.85 0.00 41.38 2.24
1673 1957 5.985530 CGCAGAAATGGATGTATCTGAACTA 59.014 40.000 5.85 0.00 41.38 2.24
1674 1958 4.813161 CGCAGAAATGGATGTATCTGAACT 59.187 41.667 5.85 0.00 41.38 3.01
1675 1959 4.811024 TCGCAGAAATGGATGTATCTGAAC 59.189 41.667 5.85 0.00 41.38 3.18
1676 1960 4.811024 GTCGCAGAAATGGATGTATCTGAA 59.189 41.667 5.85 0.00 41.38 3.02
1677 1961 4.371786 GTCGCAGAAATGGATGTATCTGA 58.628 43.478 5.85 0.00 41.38 3.27
1678 1962 3.183172 CGTCGCAGAAATGGATGTATCTG 59.817 47.826 0.00 0.00 39.69 2.90
1679 1963 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
1680 1964 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
1681 1965 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
1682 1966 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
1683 1967 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
1684 1968 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
1685 1969 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
1686 1970 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
1687 1971 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
1688 1972 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1689 1973 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1690 1974 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1691 1975 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1692 1976 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1693 1977 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1694 1978 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1695 1979 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1696 1980 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1697 1981 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1698 1982 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1699 1983 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1700 1984 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1701 1985 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1702 1986 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1703 1987 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1704 1988 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
1705 1989 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1706 1990 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1707 1991 2.042162 AGTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
1708 1992 1.637553 AGTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
1709 1993 2.022934 CAGTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
1710 1994 2.682352 GACAGTACTACTCCCTCCGTTC 59.318 54.545 0.00 0.00 0.00 3.95
1711 1995 2.308275 AGACAGTACTACTCCCTCCGTT 59.692 50.000 0.00 0.00 0.00 4.44
1712 1996 1.914798 AGACAGTACTACTCCCTCCGT 59.085 52.381 0.00 0.00 0.00 4.69
1713 1997 2.290464 CAGACAGTACTACTCCCTCCG 58.710 57.143 0.00 0.00 0.00 4.63
1714 1998 3.369242 ACAGACAGTACTACTCCCTCC 57.631 52.381 0.00 0.00 0.00 4.30
1715 1999 5.101648 ACTACAGACAGTACTACTCCCTC 57.898 47.826 0.00 0.00 0.00 4.30
1716 2000 5.254901 CAACTACAGACAGTACTACTCCCT 58.745 45.833 0.00 0.00 0.00 4.20
1717 2001 4.398673 CCAACTACAGACAGTACTACTCCC 59.601 50.000 0.00 0.00 0.00 4.30
1718 2002 5.251764 TCCAACTACAGACAGTACTACTCC 58.748 45.833 0.00 0.00 0.00 3.85
1722 2006 5.417894 CACCATCCAACTACAGACAGTACTA 59.582 44.000 0.00 0.00 0.00 1.82
1724 2008 4.219944 TCACCATCCAACTACAGACAGTAC 59.780 45.833 0.00 0.00 0.00 2.73
1725 2009 4.412843 TCACCATCCAACTACAGACAGTA 58.587 43.478 0.00 0.00 0.00 2.74
1731 2015 4.012374 AGCATTTCACCATCCAACTACAG 58.988 43.478 0.00 0.00 0.00 2.74
1773 2057 5.243426 AGCAACACACGAACTGTAAATTT 57.757 34.783 0.00 0.00 0.00 1.82
1798 2082 7.476667 AGACAACAATCTAGACTCATAGAACG 58.523 38.462 0.00 0.00 35.48 3.95
1837 2121 8.635765 AGGTTTTGTTCTGATTAAGCATTCTA 57.364 30.769 0.00 0.00 0.00 2.10
1838 2122 7.530426 AGGTTTTGTTCTGATTAAGCATTCT 57.470 32.000 0.00 0.00 0.00 2.40
1839 2123 8.730680 TCTAGGTTTTGTTCTGATTAAGCATTC 58.269 33.333 0.00 0.00 0.00 2.67
1840 2124 8.635765 TCTAGGTTTTGTTCTGATTAAGCATT 57.364 30.769 0.00 0.00 0.00 3.56
1841 2125 7.885399 ACTCTAGGTTTTGTTCTGATTAAGCAT 59.115 33.333 0.00 0.00 0.00 3.79
1905 2193 4.685169 ATTTTCCGACACAAGTGCTATG 57.315 40.909 0.00 0.00 0.00 2.23
1935 2225 8.958119 TTACCTATCGCTCATTCAAGTAAAAT 57.042 30.769 0.00 0.00 0.00 1.82
1938 2228 7.068348 AGACTTACCTATCGCTCATTCAAGTAA 59.932 37.037 0.00 0.00 0.00 2.24
1967 2257 6.260714 TCACGTAACACTTAACAGTCTAGACA 59.739 38.462 24.44 0.76 0.00 3.41
2077 2371 3.866651 CGATGTCTTCAAGGAAGGATGT 58.133 45.455 6.17 0.00 39.82 3.06
2123 2417 7.465353 TGATGCAGGAATGAAATAGTCAAAA 57.535 32.000 0.00 0.00 40.50 2.44
2265 2559 7.069344 AGGGATATTTTATCCAAAAGTCCAGG 58.931 38.462 13.97 0.00 40.61 4.45
2299 2593 4.503007 GCAGCACATAATGAGCTCAAATTG 59.497 41.667 22.50 19.04 42.27 2.32
2465 2759 4.184079 AGCAGCACAAAATTCAGATTCC 57.816 40.909 0.00 0.00 0.00 3.01
2588 2882 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2594 2888 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2600 2894 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
2601 2895 8.773404 ACTAGTGTCAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 45.69 1.28
2602 2896 9.298774 GTACTAGTGTCAAAAACGCTCTTATAT 57.701 33.333 5.39 0.00 45.69 0.86
2606 2900 4.748600 GGTACTAGTGTCAAAAACGCTCTT 59.251 41.667 5.39 0.00 45.69 2.85
2607 2901 4.038883 AGGTACTAGTGTCAAAAACGCTCT 59.961 41.667 5.39 0.00 45.69 4.09
2610 2904 4.150098 CAGAGGTACTAGTGTCAAAAACGC 59.850 45.833 5.39 0.00 41.55 4.84
2612 2906 7.494952 AGAAACAGAGGTACTAGTGTCAAAAAC 59.505 37.037 5.39 0.00 41.55 2.43
2613 2907 7.562135 AGAAACAGAGGTACTAGTGTCAAAAA 58.438 34.615 5.39 0.00 41.55 1.94
2616 2910 7.229308 TCTAGAAACAGAGGTACTAGTGTCAA 58.771 38.462 5.39 0.00 41.55 3.18
2617 2911 6.776744 TCTAGAAACAGAGGTACTAGTGTCA 58.223 40.000 5.39 0.00 41.55 3.58
2618 2912 7.337436 ACATCTAGAAACAGAGGTACTAGTGTC 59.663 40.741 5.39 0.00 41.55 3.67
2620 2914 7.633193 ACATCTAGAAACAGAGGTACTAGTG 57.367 40.000 5.39 0.00 41.55 2.74
2621 2915 9.398538 CTTACATCTAGAAACAGAGGTACTAGT 57.601 37.037 0.00 0.00 40.45 2.57
2622 2916 9.616156 TCTTACATCTAGAAACAGAGGTACTAG 57.384 37.037 0.00 0.00 40.45 2.57
2651 3141 2.777832 AAACTGCCAAACTGCCAAAA 57.222 40.000 0.00 0.00 0.00 2.44
2652 3142 3.895232 TTAAACTGCCAAACTGCCAAA 57.105 38.095 0.00 0.00 0.00 3.28
2653 3143 3.895232 TTTAAACTGCCAAACTGCCAA 57.105 38.095 0.00 0.00 0.00 4.52
2654 3144 4.125703 CAATTTAAACTGCCAAACTGCCA 58.874 39.130 0.00 0.00 0.00 4.92
2655 3145 4.376146 TCAATTTAAACTGCCAAACTGCC 58.624 39.130 0.00 0.00 0.00 4.85
2656 3146 5.523552 AGTTCAATTTAAACTGCCAAACTGC 59.476 36.000 2.54 0.00 35.68 4.40
2657 3147 6.936374 CAGTTCAATTTAAACTGCCAAACTG 58.064 36.000 12.41 12.41 44.94 3.16
2746 3236 5.560722 TTCAGATTCAGGGGCGAATATAA 57.439 39.130 0.00 0.00 35.74 0.98
2756 3246 5.710513 TCACACAAAATTCAGATTCAGGG 57.289 39.130 0.00 0.00 0.00 4.45
2785 3275 4.701651 TCAAAACTGGAATGCTTCGATGAT 59.298 37.500 1.89 0.00 0.00 2.45
2786 3276 4.071423 TCAAAACTGGAATGCTTCGATGA 58.929 39.130 1.89 0.00 0.00 2.92
2795 3285 7.066645 TCAGCTCATATCTTCAAAACTGGAATG 59.933 37.037 0.00 0.00 0.00 2.67
2805 3295 6.244552 ACTTCCATCAGCTCATATCTTCAA 57.755 37.500 0.00 0.00 0.00 2.69
2824 3314 3.858247 ACCTAGCACCAAACGATACTTC 58.142 45.455 0.00 0.00 0.00 3.01
2852 3342 5.470845 GCAGATACGTGCTCACTTAAATT 57.529 39.130 0.00 0.00 40.54 1.82
2885 3378 8.469309 AGCTTTACCTGATGCATAACAATAAT 57.531 30.769 0.00 0.00 0.00 1.28
2954 3447 8.127954 GCTAATTTTTGGTTTTTGCAAGATCAA 58.872 29.630 0.00 2.84 0.00 2.57
2983 3476 7.007723 AGTTAGATCGGATAGTCTCCTTGAAT 58.992 38.462 0.00 0.00 42.47 2.57
3188 3681 8.784043 GGATACACATTTTTCTTCTTGTACAGT 58.216 33.333 0.00 0.00 0.00 3.55
3202 3770 6.294731 GGAGAAACAAGCTGGATACACATTTT 60.295 38.462 0.00 0.00 46.17 1.82
3267 3835 9.969001 AACTTCCAAAATTATTGCTACCTAGTA 57.031 29.630 0.00 0.00 0.00 1.82
3268 3836 8.879427 AACTTCCAAAATTATTGCTACCTAGT 57.121 30.769 0.00 0.00 0.00 2.57
3297 3865 4.765339 CCTTAAGGTCCGGAAGAAAACAAT 59.235 41.667 13.83 0.00 0.00 2.71
3300 3868 3.750130 GTCCTTAAGGTCCGGAAGAAAAC 59.250 47.826 21.04 3.77 36.34 2.43
3388 4067 7.926018 GTGTTTTGAATAGTGACCCTTCATTTT 59.074 33.333 0.00 0.00 33.11 1.82
3419 4098 4.749099 TGTTGCAAAAATTGGACTGCATAC 59.251 37.500 0.00 7.01 43.83 2.39
3558 4939 1.948834 TGCTGGTGAAGATTGTGTGTG 59.051 47.619 0.00 0.00 0.00 3.82
3567 4948 1.676916 GCTGCTGTATGCTGGTGAAGA 60.677 52.381 0.00 0.00 43.37 2.87
3568 4949 0.731417 GCTGCTGTATGCTGGTGAAG 59.269 55.000 0.00 0.00 43.37 3.02
3591 4976 2.986479 GCAGGGTTCAAATTTTAGCACG 59.014 45.455 0.00 0.00 0.00 5.34
3611 4996 5.535753 AATATAGGTTGCCCAATTTCTGC 57.464 39.130 0.00 0.00 0.00 4.26
3625 5010 6.779860 AGGATTGGCAATACGAAATATAGGT 58.220 36.000 16.50 0.00 0.00 3.08
3678 5063 6.545298 GGAAAATCTTGCTGATATGGAGTTCT 59.455 38.462 0.00 0.00 34.45 3.01
3684 5069 5.135383 TGGAGGAAAATCTTGCTGATATGG 58.865 41.667 0.00 0.00 32.59 2.74
3701 5329 0.627451 ATGCCAGCAGAAATGGAGGA 59.373 50.000 0.00 0.00 40.51 3.71
3749 5379 1.616159 ATTGCCTGCGTTGTAAAGGT 58.384 45.000 0.00 0.00 33.49 3.50
3760 5398 4.035675 GGTGTAGTCATCTAAATTGCCTGC 59.964 45.833 0.00 0.00 0.00 4.85
3822 5460 0.759346 AAGGAAACTGAGGACGCTGT 59.241 50.000 0.00 0.00 42.68 4.40
3881 5520 7.972832 TTTGTGTTCTGGGTGTAGTATAAAG 57.027 36.000 0.00 0.00 0.00 1.85
3922 5561 7.439655 AGACTGTGAACTTACTGACTTGAAATC 59.560 37.037 0.00 0.00 0.00 2.17
3964 5603 3.569194 TGCCAGAGTTACAAAGGTGAA 57.431 42.857 0.00 0.00 0.00 3.18
4044 5683 0.250234 TGGCAGATGTAGCTGGTGAC 59.750 55.000 0.00 0.00 36.41 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.