Multiple sequence alignment - TraesCS6A01G257600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G257600 chr6A 100.000 2816 0 0 1 2816 479832712 479835527 0.000000e+00 5201.0
1 TraesCS6A01G257600 chr6A 82.184 174 24 5 403 570 592358902 592358730 2.920000e-30 143.0
2 TraesCS6A01G257600 chr6B 92.468 2204 87 27 633 2816 481090461 481088317 0.000000e+00 3077.0
3 TraesCS6A01G257600 chr6B 92.568 148 10 1 257 403 195090334 195090187 7.900000e-51 211.0
4 TraesCS6A01G257600 chr6D 90.061 1791 81 38 605 2340 339389007 339390755 0.000000e+00 2231.0
5 TraesCS6A01G257600 chr6D 87.143 350 44 1 2467 2816 339431892 339432240 2.030000e-106 396.0
6 TraesCS6A01G257600 chr6D 83.810 420 46 11 1 403 65728883 65728469 2.050000e-101 379.0
7 TraesCS6A01G257600 chr7A 97.297 259 5 2 1 257 279168004 279168262 3.330000e-119 438.0
8 TraesCS6A01G257600 chr7A 97.276 257 6 1 1 256 279175318 279175574 4.310000e-118 435.0
9 TraesCS6A01G257600 chr7A 97.610 251 6 0 7 257 6052002 6051752 5.570000e-117 431.0
10 TraesCS6A01G257600 chr7A 96.899 258 7 1 1 257 627024398 627024655 5.570000e-117 431.0
11 TraesCS6A01G257600 chr7A 83.626 171 24 3 403 569 21183308 21183478 1.040000e-34 158.0
12 TraesCS6A01G257600 chr5A 97.287 258 6 1 1 257 343904131 343903874 1.200000e-118 436.0
13 TraesCS6A01G257600 chr5A 97.276 257 5 2 1 256 671916995 671916740 4.310000e-118 435.0
14 TraesCS6A01G257600 chr5A 83.146 178 20 6 403 572 689515159 689515334 1.350000e-33 154.0
15 TraesCS6A01G257600 chr2A 97.266 256 7 0 1 256 754841705 754841960 4.310000e-118 435.0
16 TraesCS6A01G257600 chr2A 96.899 258 7 1 1 257 631833057 631833314 5.570000e-117 431.0
17 TraesCS6A01G257600 chr2A 91.279 172 15 0 1526 1697 651752933 651752762 4.690000e-58 235.0
18 TraesCS6A01G257600 chr2A 89.441 161 17 0 1286 1446 651753222 651753062 1.320000e-48 204.0
19 TraesCS6A01G257600 chr2A 81.818 187 27 6 403 585 69990750 69990567 1.750000e-32 150.0
20 TraesCS6A01G257600 chr3A 87.363 364 30 13 1 352 556434397 556434756 1.210000e-108 403.0
21 TraesCS6A01G257600 chr3A 82.210 371 47 11 8 363 122440877 122440511 4.560000e-78 302.0
22 TraesCS6A01G257600 chr3A 86.335 161 13 7 403 556 472910880 472910722 1.740000e-37 167.0
23 TraesCS6A01G257600 chr3A 83.626 171 23 5 403 569 380173894 380174063 3.760000e-34 156.0
24 TraesCS6A01G257600 chr5B 85.979 378 36 10 1 363 444473367 444473742 3.400000e-104 388.0
25 TraesCS6A01G257600 chr5B 86.047 172 18 5 403 569 203439333 203439503 2.230000e-41 180.0
26 TraesCS6A01G257600 chr5B 84.118 170 24 3 403 569 441084517 441084686 8.070000e-36 161.0
27 TraesCS6A01G257600 chr3D 85.676 377 38 8 1 363 465804271 465804645 1.580000e-102 383.0
28 TraesCS6A01G257600 chr2D 90.751 173 15 1 1526 1697 506941913 506941741 2.180000e-56 230.0
29 TraesCS6A01G257600 chr2D 90.683 161 15 0 1286 1446 506942183 506942023 6.110000e-52 215.0
30 TraesCS6A01G257600 chr1D 93.960 149 7 2 257 403 271279004 271278856 1.020000e-54 224.0
31 TraesCS6A01G257600 chr1D 92.617 149 9 2 257 403 6565537 6565685 2.200000e-51 213.0
32 TraesCS6A01G257600 chr1D 84.127 63 9 1 2653 2715 224400526 224400465 3.030000e-05 60.2
33 TraesCS6A01G257600 chr4D 91.946 149 10 2 257 403 133219977 133219829 1.020000e-49 207.0
34 TraesCS6A01G257600 chr2B 90.000 160 16 0 1287 1446 594983264 594983105 1.020000e-49 207.0
35 TraesCS6A01G257600 chr2B 82.759 174 24 4 403 570 693065408 693065581 1.750000e-32 150.0
36 TraesCS6A01G257600 chr2B 85.926 135 14 3 403 533 153217771 153217904 3.780000e-29 139.0
37 TraesCS6A01G257600 chr4A 85.535 159 15 6 403 556 673472023 673472178 2.900000e-35 159.0
38 TraesCS6A01G257600 chr4A 80.814 172 28 2 403 569 54402745 54402916 2.280000e-26 130.0
39 TraesCS6A01G257600 chr7B 83.908 174 19 6 403 570 27998315 27998145 1.040000e-34 158.0
40 TraesCS6A01G257600 chr7B 84.337 166 19 7 403 562 726002414 726002250 3.760000e-34 156.0
41 TraesCS6A01G257600 chr7B 80.357 168 22 9 404 569 744297223 744297381 1.770000e-22 117.0
42 TraesCS6A01G257600 chr5D 82.840 169 27 1 403 569 240503684 240503516 1.750000e-32 150.0
43 TraesCS6A01G257600 chr1A 83.537 164 19 6 410 569 568722425 568722266 2.260000e-31 147.0
44 TraesCS6A01G257600 chr1A 97.297 37 1 0 403 439 496291125 496291089 2.340000e-06 63.9
45 TraesCS6A01G257600 chr4B 82.099 162 24 4 404 564 459076281 459076124 1.760000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G257600 chr6A 479832712 479835527 2815 False 5201 5201 100.000 1 2816 1 chr6A.!!$F1 2815
1 TraesCS6A01G257600 chr6B 481088317 481090461 2144 True 3077 3077 92.468 633 2816 1 chr6B.!!$R2 2183
2 TraesCS6A01G257600 chr6D 339389007 339390755 1748 False 2231 2231 90.061 605 2340 1 chr6D.!!$F1 1735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2120 0.034337 CCAACCCGACGAGAAAAGGA 59.966 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.363297 GGAACTCTTCCCCGACACT 58.637 57.895 0.00 0.00 44.30 3.55
24 25 0.685660 GGAACTCTTCCCCGACACTT 59.314 55.000 0.00 0.00 44.30 3.16
25 26 1.071857 GGAACTCTTCCCCGACACTTT 59.928 52.381 0.00 0.00 44.30 2.66
26 27 2.143925 GAACTCTTCCCCGACACTTTG 58.856 52.381 0.00 0.00 0.00 2.77
27 28 0.250338 ACTCTTCCCCGACACTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
28 29 0.035458 CTCTTCCCCGACACTTTGCT 59.965 55.000 0.00 0.00 0.00 3.91
29 30 0.250295 TCTTCCCCGACACTTTGCTG 60.250 55.000 0.00 0.00 0.00 4.41
30 31 1.228124 TTCCCCGACACTTTGCTGG 60.228 57.895 0.00 0.00 0.00 4.85
31 32 1.701031 TTCCCCGACACTTTGCTGGA 61.701 55.000 0.00 0.00 0.00 3.86
32 33 1.002134 CCCCGACACTTTGCTGGAT 60.002 57.895 0.00 0.00 0.00 3.41
33 34 1.026718 CCCCGACACTTTGCTGGATC 61.027 60.000 0.00 0.00 0.00 3.36
34 35 1.361668 CCCGACACTTTGCTGGATCG 61.362 60.000 0.00 0.00 0.00 3.69
35 36 1.361668 CCGACACTTTGCTGGATCGG 61.362 60.000 0.00 0.00 42.69 4.18
36 37 0.389817 CGACACTTTGCTGGATCGGA 60.390 55.000 0.00 0.00 0.00 4.55
37 38 1.363744 GACACTTTGCTGGATCGGAG 58.636 55.000 0.00 0.00 0.00 4.63
38 39 0.036010 ACACTTTGCTGGATCGGAGG 60.036 55.000 0.00 0.00 0.00 4.30
39 40 1.078143 ACTTTGCTGGATCGGAGGC 60.078 57.895 0.00 0.00 0.00 4.70
40 41 1.821332 CTTTGCTGGATCGGAGGCC 60.821 63.158 0.00 0.00 0.00 5.19
52 53 3.234730 GAGGCCGGGGATCGTCAT 61.235 66.667 2.18 0.00 37.11 3.06
53 54 3.227792 GAGGCCGGGGATCGTCATC 62.228 68.421 2.18 0.00 37.11 2.92
54 55 4.664677 GGCCGGGGATCGTCATCG 62.665 72.222 2.18 0.00 37.11 3.84
65 66 1.681825 TCGTCATCGAGTTGAACGTG 58.318 50.000 4.86 0.00 41.35 4.49
66 67 1.002142 TCGTCATCGAGTTGAACGTGT 60.002 47.619 4.86 0.00 41.35 4.49
67 68 1.122501 CGTCATCGAGTTGAACGTGTG 59.877 52.381 0.00 0.00 39.71 3.82
68 69 1.136611 GTCATCGAGTTGAACGTGTGC 60.137 52.381 0.00 0.00 0.00 4.57
69 70 1.139989 CATCGAGTTGAACGTGTGCT 58.860 50.000 0.00 0.00 0.00 4.40
70 71 2.030628 TCATCGAGTTGAACGTGTGCTA 60.031 45.455 0.00 0.00 0.00 3.49
71 72 2.046283 TCGAGTTGAACGTGTGCTAG 57.954 50.000 0.00 0.00 0.00 3.42
72 73 1.605232 TCGAGTTGAACGTGTGCTAGA 59.395 47.619 0.00 0.00 0.00 2.43
73 74 2.033675 TCGAGTTGAACGTGTGCTAGAA 59.966 45.455 0.00 0.00 0.00 2.10
74 75 2.153247 CGAGTTGAACGTGTGCTAGAAC 59.847 50.000 0.00 0.00 0.00 3.01
75 76 3.381949 GAGTTGAACGTGTGCTAGAACT 58.618 45.455 1.64 0.00 0.00 3.01
76 77 3.381949 AGTTGAACGTGTGCTAGAACTC 58.618 45.455 1.64 0.00 0.00 3.01
77 78 2.046283 TGAACGTGTGCTAGAACTCG 57.954 50.000 21.00 21.00 41.49 4.18
78 79 1.335597 TGAACGTGTGCTAGAACTCGG 60.336 52.381 24.99 10.58 40.39 4.63
79 80 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
80 81 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
81 82 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
82 83 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
83 84 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
84 85 0.458716 GTGCTAGAACTCGGAGGTGC 60.459 60.000 10.23 3.39 0.00 5.01
85 86 1.142097 GCTAGAACTCGGAGGTGCC 59.858 63.158 10.23 0.00 0.00 5.01
94 95 4.180496 GGAGGTGCCGTAGTTTCG 57.820 61.111 0.00 0.00 0.00 3.46
102 103 3.204505 CCGTAGTTTCGGTGCTTGA 57.795 52.632 0.00 0.00 44.77 3.02
103 104 1.722011 CCGTAGTTTCGGTGCTTGAT 58.278 50.000 0.00 0.00 44.77 2.57
104 105 1.659098 CCGTAGTTTCGGTGCTTGATC 59.341 52.381 0.00 0.00 44.77 2.92
105 106 1.320555 CGTAGTTTCGGTGCTTGATCG 59.679 52.381 0.00 0.00 0.00 3.69
106 107 1.659098 GTAGTTTCGGTGCTTGATCGG 59.341 52.381 0.00 0.00 0.00 4.18
107 108 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.000 0.00 0.00 0.00 4.69
108 109 0.442699 GTTTCGGTGCTTGATCGGTC 59.557 55.000 0.00 0.00 0.00 4.79
109 110 1.011968 TTTCGGTGCTTGATCGGTCG 61.012 55.000 0.00 0.00 0.00 4.79
110 111 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
111 112 2.511600 GGTGCTTGATCGGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
112 113 3.195698 GTGCTTGATCGGTCGGGC 61.196 66.667 5.85 5.85 0.00 6.13
113 114 4.467084 TGCTTGATCGGTCGGGCC 62.467 66.667 9.60 0.00 0.00 5.80
124 125 4.720902 TCGGGCCGTGGAGACGTA 62.721 66.667 27.32 0.00 44.54 3.57
125 126 4.487412 CGGGCCGTGGAGACGTAC 62.487 72.222 19.97 0.00 44.54 3.67
126 127 4.487412 GGGCCGTGGAGACGTACG 62.487 72.222 15.01 15.01 44.54 3.67
127 128 3.434319 GGCCGTGGAGACGTACGA 61.434 66.667 24.41 0.00 44.54 3.43
128 129 2.202401 GCCGTGGAGACGTACGAC 60.202 66.667 24.41 16.77 44.54 4.34
129 130 2.684843 GCCGTGGAGACGTACGACT 61.685 63.158 24.41 21.94 44.54 4.18
130 131 1.361668 GCCGTGGAGACGTACGACTA 61.362 60.000 24.41 3.99 44.54 2.59
131 132 0.371645 CCGTGGAGACGTACGACTAC 59.628 60.000 24.41 22.43 44.54 2.73
132 133 1.070821 CGTGGAGACGTACGACTACA 58.929 55.000 25.38 25.38 42.54 2.74
133 134 1.662629 CGTGGAGACGTACGACTACAT 59.337 52.381 30.09 6.44 42.54 2.29
134 135 2.285486 CGTGGAGACGTACGACTACATC 60.285 54.545 30.09 22.29 42.54 3.06
135 136 2.674852 GTGGAGACGTACGACTACATCA 59.325 50.000 30.09 17.91 33.76 3.07
136 137 3.125829 GTGGAGACGTACGACTACATCAA 59.874 47.826 30.09 9.42 33.76 2.57
137 138 3.125829 TGGAGACGTACGACTACATCAAC 59.874 47.826 25.38 9.63 0.00 3.18
138 139 3.486542 GGAGACGTACGACTACATCAACC 60.487 52.174 24.41 12.48 0.00 3.77
139 140 3.076621 AGACGTACGACTACATCAACCA 58.923 45.455 24.41 0.00 0.00 3.67
140 141 3.503363 AGACGTACGACTACATCAACCAA 59.497 43.478 24.41 0.00 0.00 3.67
141 142 4.022935 AGACGTACGACTACATCAACCAAA 60.023 41.667 24.41 0.00 0.00 3.28
142 143 3.983344 ACGTACGACTACATCAACCAAAC 59.017 43.478 24.41 0.00 0.00 2.93
143 144 3.058520 CGTACGACTACATCAACCAAACG 59.941 47.826 10.44 0.00 0.00 3.60
144 145 1.796459 ACGACTACATCAACCAAACGC 59.204 47.619 0.00 0.00 0.00 4.84
145 146 2.066262 CGACTACATCAACCAAACGCT 58.934 47.619 0.00 0.00 0.00 5.07
146 147 2.478894 CGACTACATCAACCAAACGCTT 59.521 45.455 0.00 0.00 0.00 4.68
147 148 3.423123 CGACTACATCAACCAAACGCTTC 60.423 47.826 0.00 0.00 0.00 3.86
148 149 2.812011 ACTACATCAACCAAACGCTTCC 59.188 45.455 0.00 0.00 0.00 3.46
149 150 0.591170 ACATCAACCAAACGCTTCCG 59.409 50.000 0.00 0.00 41.14 4.30
159 160 4.478195 CGCTTCCGTTGTCGATCT 57.522 55.556 0.00 0.00 39.71 2.75
160 161 3.616935 CGCTTCCGTTGTCGATCTA 57.383 52.632 0.00 0.00 39.71 1.98
161 162 1.189403 CGCTTCCGTTGTCGATCTAC 58.811 55.000 0.00 0.00 39.71 2.59
162 163 1.189403 GCTTCCGTTGTCGATCTACG 58.811 55.000 12.27 12.27 42.81 3.51
181 182 3.589061 CGAGGTACGTAGATCACACTC 57.411 52.381 0.00 0.00 37.22 3.51
182 183 3.196463 CGAGGTACGTAGATCACACTCT 58.804 50.000 0.00 0.00 37.22 3.24
183 184 3.245754 CGAGGTACGTAGATCACACTCTC 59.754 52.174 0.00 0.00 37.22 3.20
184 185 3.543665 AGGTACGTAGATCACACTCTCC 58.456 50.000 0.00 0.00 0.00 3.71
185 186 2.617774 GGTACGTAGATCACACTCTCCC 59.382 54.545 0.00 0.00 0.00 4.30
186 187 1.765230 ACGTAGATCACACTCTCCCC 58.235 55.000 0.00 0.00 0.00 4.81
187 188 1.285373 ACGTAGATCACACTCTCCCCT 59.715 52.381 0.00 0.00 0.00 4.79
188 189 1.950909 CGTAGATCACACTCTCCCCTC 59.049 57.143 0.00 0.00 0.00 4.30
189 190 1.950909 GTAGATCACACTCTCCCCTCG 59.049 57.143 0.00 0.00 0.00 4.63
190 191 0.333312 AGATCACACTCTCCCCTCGT 59.667 55.000 0.00 0.00 0.00 4.18
191 192 1.187087 GATCACACTCTCCCCTCGTT 58.813 55.000 0.00 0.00 0.00 3.85
192 193 0.898320 ATCACACTCTCCCCTCGTTG 59.102 55.000 0.00 0.00 0.00 4.10
193 194 1.374758 CACACTCTCCCCTCGTTGC 60.375 63.158 0.00 0.00 0.00 4.17
194 195 1.534235 ACACTCTCCCCTCGTTGCT 60.534 57.895 0.00 0.00 0.00 3.91
195 196 0.251653 ACACTCTCCCCTCGTTGCTA 60.252 55.000 0.00 0.00 0.00 3.49
196 197 1.115467 CACTCTCCCCTCGTTGCTAT 58.885 55.000 0.00 0.00 0.00 2.97
197 198 1.115467 ACTCTCCCCTCGTTGCTATG 58.885 55.000 0.00 0.00 0.00 2.23
198 199 0.249657 CTCTCCCCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
199 200 0.975556 TCTCCCCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
200 201 0.107456 CTCCCCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
201 202 0.106708 TCCCCTCGTTGCTATGCATC 59.893 55.000 0.19 0.00 38.76 3.91
202 203 0.179048 CCCCTCGTTGCTATGCATCA 60.179 55.000 0.19 0.00 38.76 3.07
203 204 0.940126 CCCTCGTTGCTATGCATCAC 59.060 55.000 0.19 0.00 38.76 3.06
204 205 1.655484 CCTCGTTGCTATGCATCACA 58.345 50.000 0.19 0.00 38.76 3.58
205 206 2.216046 CCTCGTTGCTATGCATCACAT 58.784 47.619 0.19 0.00 43.18 3.21
206 207 2.032290 CCTCGTTGCTATGCATCACATG 60.032 50.000 0.19 0.00 40.06 3.21
207 208 2.867975 CTCGTTGCTATGCATCACATGA 59.132 45.455 0.19 3.61 40.06 3.07
208 209 3.469739 TCGTTGCTATGCATCACATGAT 58.530 40.909 0.19 0.00 40.06 2.45
209 210 3.495753 TCGTTGCTATGCATCACATGATC 59.504 43.478 0.19 0.00 40.06 2.92
210 211 3.497262 CGTTGCTATGCATCACATGATCT 59.503 43.478 0.19 0.00 40.06 2.75
211 212 4.024302 CGTTGCTATGCATCACATGATCTT 60.024 41.667 0.19 0.00 40.06 2.40
212 213 5.212934 GTTGCTATGCATCACATGATCTTG 58.787 41.667 0.19 7.04 40.06 3.02
213 214 3.252458 TGCTATGCATCACATGATCTTGC 59.748 43.478 0.19 3.75 40.06 4.01
214 215 3.667166 GCTATGCATCACATGATCTTGCG 60.667 47.826 0.19 0.00 40.06 4.85
215 216 1.741528 TGCATCACATGATCTTGCGT 58.258 45.000 8.45 0.00 31.21 5.24
216 217 1.399089 TGCATCACATGATCTTGCGTG 59.601 47.619 8.45 6.37 31.21 5.34
217 218 1.399440 GCATCACATGATCTTGCGTGT 59.601 47.619 8.45 0.00 38.49 4.49
219 220 3.301352 CACATGATCTTGCGTGTGC 57.699 52.632 8.45 0.00 45.48 4.57
220 221 0.519792 CACATGATCTTGCGTGTGCG 60.520 55.000 8.45 0.00 45.48 5.34
221 222 3.114044 CACATGATCTTGCGTGTGCGT 62.114 52.381 8.45 0.00 45.48 5.24
222 223 3.802605 CACATGATCTTGCGTGTGCGTA 61.803 50.000 8.45 0.00 45.48 4.42
223 224 5.579186 CACATGATCTTGCGTGTGCGTAG 62.579 52.174 8.45 0.00 45.48 3.51
252 253 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
253 254 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
254 255 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
255 256 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
256 257 4.998672 TGAAATTACTACGTTCCCCAACAG 59.001 41.667 0.00 0.00 32.14 3.16
257 258 4.895668 AATTACTACGTTCCCCAACAGA 57.104 40.909 0.00 0.00 32.14 3.41
258 259 4.895668 ATTACTACGTTCCCCAACAGAA 57.104 40.909 0.00 0.00 32.14 3.02
259 260 2.833631 ACTACGTTCCCCAACAGAAG 57.166 50.000 0.00 0.00 32.14 2.85
260 261 2.322658 ACTACGTTCCCCAACAGAAGA 58.677 47.619 0.00 0.00 32.14 2.87
261 262 2.904434 ACTACGTTCCCCAACAGAAGAT 59.096 45.455 0.00 0.00 32.14 2.40
262 263 4.091549 ACTACGTTCCCCAACAGAAGATA 58.908 43.478 0.00 0.00 32.14 1.98
263 264 3.611766 ACGTTCCCCAACAGAAGATAG 57.388 47.619 0.00 0.00 32.14 2.08
264 265 2.280628 CGTTCCCCAACAGAAGATAGC 58.719 52.381 0.00 0.00 32.14 2.97
265 266 2.644676 GTTCCCCAACAGAAGATAGCC 58.355 52.381 0.00 0.00 32.14 3.93
266 267 1.965414 TCCCCAACAGAAGATAGCCA 58.035 50.000 0.00 0.00 0.00 4.75
267 268 2.274542 TCCCCAACAGAAGATAGCCAA 58.725 47.619 0.00 0.00 0.00 4.52
268 269 2.026262 TCCCCAACAGAAGATAGCCAAC 60.026 50.000 0.00 0.00 0.00 3.77
269 270 2.009774 CCCAACAGAAGATAGCCAACG 58.990 52.381 0.00 0.00 0.00 4.10
270 271 2.354704 CCCAACAGAAGATAGCCAACGA 60.355 50.000 0.00 0.00 0.00 3.85
271 272 3.535561 CCAACAGAAGATAGCCAACGAT 58.464 45.455 0.00 0.00 0.00 3.73
272 273 3.310774 CCAACAGAAGATAGCCAACGATG 59.689 47.826 0.00 0.00 0.00 3.84
273 274 4.183865 CAACAGAAGATAGCCAACGATGA 58.816 43.478 0.00 0.00 0.00 2.92
274 275 4.679373 ACAGAAGATAGCCAACGATGAT 57.321 40.909 0.00 0.00 0.00 2.45
275 276 4.375272 ACAGAAGATAGCCAACGATGATG 58.625 43.478 0.00 0.00 0.00 3.07
276 277 3.744942 CAGAAGATAGCCAACGATGATGG 59.255 47.826 0.00 0.00 41.08 3.51
277 278 3.389329 AGAAGATAGCCAACGATGATGGT 59.611 43.478 0.00 0.00 40.23 3.55
278 279 3.845781 AGATAGCCAACGATGATGGTT 57.154 42.857 0.00 0.00 40.23 3.67
279 280 4.156455 AGATAGCCAACGATGATGGTTT 57.844 40.909 0.00 0.00 40.23 3.27
280 281 4.130118 AGATAGCCAACGATGATGGTTTC 58.870 43.478 0.00 0.00 40.23 2.78
281 282 1.463674 AGCCAACGATGATGGTTTCC 58.536 50.000 0.00 0.00 40.23 3.13
282 283 0.455815 GCCAACGATGATGGTTTCCC 59.544 55.000 0.00 0.00 40.23 3.97
283 284 1.102978 CCAACGATGATGGTTTCCCC 58.897 55.000 0.00 0.00 33.08 4.81
284 285 1.102978 CAACGATGATGGTTTCCCCC 58.897 55.000 0.00 0.00 0.00 5.40
285 286 0.999712 AACGATGATGGTTTCCCCCT 59.000 50.000 0.00 0.00 0.00 4.79
286 287 0.546598 ACGATGATGGTTTCCCCCTC 59.453 55.000 0.00 0.00 0.00 4.30
287 288 0.179018 CGATGATGGTTTCCCCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
288 289 0.179018 GATGATGGTTTCCCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
289 290 1.645402 ATGATGGTTTCCCCCTCCGG 61.645 60.000 0.00 0.00 0.00 5.14
290 291 3.716204 GATGGTTTCCCCCTCCGGC 62.716 68.421 0.00 0.00 0.00 6.13
292 293 4.426313 GGTTTCCCCCTCCGGCAG 62.426 72.222 0.00 0.00 0.00 4.85
293 294 4.426313 GTTTCCCCCTCCGGCAGG 62.426 72.222 11.75 11.75 43.01 4.85
314 315 2.677228 CCGGAACAGGCTCCCAAT 59.323 61.111 0.00 0.00 31.03 3.16
315 316 1.000896 CCGGAACAGGCTCCCAATT 60.001 57.895 0.00 0.00 31.03 2.32
316 317 1.315257 CCGGAACAGGCTCCCAATTG 61.315 60.000 0.00 0.00 31.03 2.32
317 318 1.315257 CGGAACAGGCTCCCAATTGG 61.315 60.000 18.21 18.21 31.03 3.16
318 319 0.251787 GGAACAGGCTCCCAATTGGT 60.252 55.000 22.91 1.42 34.77 3.67
319 320 1.632589 GAACAGGCTCCCAATTGGTT 58.367 50.000 22.91 8.75 34.77 3.67
320 321 1.970640 GAACAGGCTCCCAATTGGTTT 59.029 47.619 22.91 4.48 34.77 3.27
321 322 2.101640 ACAGGCTCCCAATTGGTTTT 57.898 45.000 22.91 1.37 34.77 2.43
322 323 2.407562 ACAGGCTCCCAATTGGTTTTT 58.592 42.857 22.91 2.08 34.77 1.94
323 324 2.368548 ACAGGCTCCCAATTGGTTTTTC 59.631 45.455 22.91 8.55 34.77 2.29
324 325 1.618343 AGGCTCCCAATTGGTTTTTCG 59.382 47.619 22.91 6.77 34.77 3.46
325 326 1.343142 GGCTCCCAATTGGTTTTTCGT 59.657 47.619 22.91 0.00 34.77 3.85
326 327 2.403259 GCTCCCAATTGGTTTTTCGTG 58.597 47.619 22.91 8.50 34.77 4.35
327 328 2.866065 GCTCCCAATTGGTTTTTCGTGG 60.866 50.000 22.91 4.59 34.77 4.94
328 329 1.069358 TCCCAATTGGTTTTTCGTGGC 59.931 47.619 22.91 0.00 34.77 5.01
329 330 1.069978 CCCAATTGGTTTTTCGTGGCT 59.930 47.619 22.91 0.00 0.00 4.75
330 331 2.297597 CCCAATTGGTTTTTCGTGGCTA 59.702 45.455 22.91 0.00 0.00 3.93
331 332 3.056179 CCCAATTGGTTTTTCGTGGCTAT 60.056 43.478 22.91 0.00 0.00 2.97
332 333 4.158764 CCCAATTGGTTTTTCGTGGCTATA 59.841 41.667 22.91 0.00 0.00 1.31
333 334 5.339990 CCAATTGGTTTTTCGTGGCTATAG 58.660 41.667 16.90 0.00 0.00 1.31
334 335 5.124776 CCAATTGGTTTTTCGTGGCTATAGA 59.875 40.000 16.90 0.00 0.00 1.98
335 336 6.258160 CAATTGGTTTTTCGTGGCTATAGAG 58.742 40.000 3.21 0.00 0.00 2.43
336 337 4.811969 TGGTTTTTCGTGGCTATAGAGA 57.188 40.909 3.21 0.00 0.00 3.10
337 338 4.501071 TGGTTTTTCGTGGCTATAGAGAC 58.499 43.478 3.21 0.00 0.00 3.36
338 339 4.222145 TGGTTTTTCGTGGCTATAGAGACT 59.778 41.667 3.21 0.00 0.00 3.24
339 340 5.176592 GGTTTTTCGTGGCTATAGAGACTT 58.823 41.667 3.21 0.00 0.00 3.01
340 341 5.063564 GGTTTTTCGTGGCTATAGAGACTTG 59.936 44.000 3.21 0.00 0.00 3.16
341 342 3.438297 TTCGTGGCTATAGAGACTTGC 57.562 47.619 3.21 0.00 0.00 4.01
342 343 1.333931 TCGTGGCTATAGAGACTTGCG 59.666 52.381 3.21 0.00 0.00 4.85
343 344 1.600663 CGTGGCTATAGAGACTTGCGG 60.601 57.143 3.21 0.00 0.00 5.69
344 345 0.389391 TGGCTATAGAGACTTGCGGC 59.611 55.000 3.21 0.00 0.00 6.53
345 346 0.664767 GGCTATAGAGACTTGCGGCG 60.665 60.000 0.51 0.51 0.00 6.46
346 347 0.664767 GCTATAGAGACTTGCGGCGG 60.665 60.000 9.78 0.00 0.00 6.13
347 348 0.664767 CTATAGAGACTTGCGGCGGC 60.665 60.000 9.78 9.68 40.52 6.53
348 349 2.402282 TATAGAGACTTGCGGCGGCG 62.402 60.000 28.70 28.70 44.10 6.46
370 371 5.548181 GGAACTCCCGATCTAGGTTTATT 57.452 43.478 0.00 0.00 0.00 1.40
371 372 5.926663 GGAACTCCCGATCTAGGTTTATTT 58.073 41.667 0.00 0.00 0.00 1.40
372 373 5.990386 GGAACTCCCGATCTAGGTTTATTTC 59.010 44.000 0.00 0.00 0.00 2.17
373 374 6.183360 GGAACTCCCGATCTAGGTTTATTTCT 60.183 42.308 0.00 0.00 0.00 2.52
374 375 6.163135 ACTCCCGATCTAGGTTTATTTCTG 57.837 41.667 0.00 0.00 0.00 3.02
375 376 5.070580 ACTCCCGATCTAGGTTTATTTCTGG 59.929 44.000 0.00 0.00 0.00 3.86
376 377 4.347000 TCCCGATCTAGGTTTATTTCTGGG 59.653 45.833 0.00 0.00 0.00 4.45
377 378 4.505039 CCCGATCTAGGTTTATTTCTGGGG 60.505 50.000 0.00 0.00 0.00 4.96
378 379 4.102681 CCGATCTAGGTTTATTTCTGGGGT 59.897 45.833 0.00 0.00 0.00 4.95
379 380 5.397559 CCGATCTAGGTTTATTTCTGGGGTT 60.398 44.000 0.00 0.00 0.00 4.11
380 381 6.120220 CGATCTAGGTTTATTTCTGGGGTTT 58.880 40.000 0.00 0.00 0.00 3.27
381 382 6.602009 CGATCTAGGTTTATTTCTGGGGTTTT 59.398 38.462 0.00 0.00 0.00 2.43
382 383 7.771826 CGATCTAGGTTTATTTCTGGGGTTTTA 59.228 37.037 0.00 0.00 0.00 1.52
383 384 9.642343 GATCTAGGTTTATTTCTGGGGTTTTAT 57.358 33.333 0.00 0.00 0.00 1.40
408 409 7.747809 ATTTATAGAAATTTTTGGCTCCCCA 57.252 32.000 0.00 0.00 33.52 4.96
409 410 7.747809 TTTATAGAAATTTTTGGCTCCCCAT 57.252 32.000 0.00 0.00 41.78 4.00
410 411 3.986996 AGAAATTTTTGGCTCCCCATG 57.013 42.857 0.00 0.00 41.78 3.66
411 412 2.026915 AGAAATTTTTGGCTCCCCATGC 60.027 45.455 0.00 0.00 41.78 4.06
412 413 1.660242 AATTTTTGGCTCCCCATGCT 58.340 45.000 0.00 0.00 41.78 3.79
413 414 1.660242 ATTTTTGGCTCCCCATGCTT 58.340 45.000 0.00 0.00 41.78 3.91
414 415 0.975887 TTTTTGGCTCCCCATGCTTC 59.024 50.000 0.00 0.00 41.78 3.86
415 416 0.904394 TTTTGGCTCCCCATGCTTCC 60.904 55.000 0.00 0.00 41.78 3.46
416 417 2.091640 TTTGGCTCCCCATGCTTCCA 62.092 55.000 0.00 0.00 41.78 3.53
417 418 1.877672 TTGGCTCCCCATGCTTCCAT 61.878 55.000 0.00 0.00 41.78 3.41
418 419 1.530183 GGCTCCCCATGCTTCCATC 60.530 63.158 0.00 0.00 0.00 3.51
419 420 1.530183 GCTCCCCATGCTTCCATCC 60.530 63.158 0.00 0.00 0.00 3.51
420 421 1.228063 CTCCCCATGCTTCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
421 422 1.987807 CTCCCCATGCTTCCATCCGT 61.988 60.000 0.00 0.00 0.00 4.69
422 423 1.825191 CCCCATGCTTCCATCCGTG 60.825 63.158 0.00 0.00 0.00 4.94
423 424 2.484062 CCCATGCTTCCATCCGTGC 61.484 63.158 0.00 0.00 0.00 5.34
424 425 1.452651 CCATGCTTCCATCCGTGCT 60.453 57.895 0.00 0.00 0.00 4.40
425 426 1.442526 CCATGCTTCCATCCGTGCTC 61.443 60.000 0.00 0.00 0.00 4.26
426 427 1.153086 ATGCTTCCATCCGTGCTCC 60.153 57.895 0.00 0.00 0.00 4.70
427 428 2.514824 GCTTCCATCCGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
428 429 2.989639 CTTCCATCCGTGCTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
429 430 1.450312 CTTCCATCCGTGCTCCCAC 60.450 63.158 0.00 0.00 38.62 4.61
430 431 1.903877 CTTCCATCCGTGCTCCCACT 61.904 60.000 0.00 0.00 39.86 4.00
431 432 1.488705 TTCCATCCGTGCTCCCACTT 61.489 55.000 0.00 0.00 39.86 3.16
432 433 1.002134 CCATCCGTGCTCCCACTTT 60.002 57.895 0.00 0.00 39.86 2.66
433 434 0.251916 CCATCCGTGCTCCCACTTTA 59.748 55.000 0.00 0.00 39.86 1.85
434 435 1.134098 CCATCCGTGCTCCCACTTTAT 60.134 52.381 0.00 0.00 39.86 1.40
435 436 2.213499 CATCCGTGCTCCCACTTTATC 58.787 52.381 0.00 0.00 39.86 1.75
436 437 0.539986 TCCGTGCTCCCACTTTATCC 59.460 55.000 0.00 0.00 39.86 2.59
437 438 0.541863 CCGTGCTCCCACTTTATCCT 59.458 55.000 0.00 0.00 39.86 3.24
438 439 1.760613 CCGTGCTCCCACTTTATCCTA 59.239 52.381 0.00 0.00 39.86 2.94
439 440 2.483188 CCGTGCTCCCACTTTATCCTAC 60.483 54.545 0.00 0.00 39.86 3.18
440 441 2.798499 CGTGCTCCCACTTTATCCTACG 60.798 54.545 0.00 0.00 39.86 3.51
441 442 2.429610 GTGCTCCCACTTTATCCTACGA 59.570 50.000 0.00 0.00 38.93 3.43
442 443 2.429610 TGCTCCCACTTTATCCTACGAC 59.570 50.000 0.00 0.00 0.00 4.34
443 444 2.694109 GCTCCCACTTTATCCTACGACT 59.306 50.000 0.00 0.00 0.00 4.18
444 445 3.491104 GCTCCCACTTTATCCTACGACTG 60.491 52.174 0.00 0.00 0.00 3.51
445 446 3.700038 CTCCCACTTTATCCTACGACTGT 59.300 47.826 0.00 0.00 0.00 3.55
446 447 3.698040 TCCCACTTTATCCTACGACTGTC 59.302 47.826 0.00 0.00 0.00 3.51
447 448 3.700038 CCCACTTTATCCTACGACTGTCT 59.300 47.826 6.21 0.00 0.00 3.41
448 449 4.159879 CCCACTTTATCCTACGACTGTCTT 59.840 45.833 6.21 0.00 0.00 3.01
449 450 5.337330 CCCACTTTATCCTACGACTGTCTTT 60.337 44.000 6.21 0.00 0.00 2.52
450 451 6.164176 CCACTTTATCCTACGACTGTCTTTT 58.836 40.000 6.21 0.00 0.00 2.27
451 452 6.649557 CCACTTTATCCTACGACTGTCTTTTT 59.350 38.462 6.21 0.00 0.00 1.94
481 482 9.853177 TTTTCCTTTCTAATCTAATCATCCCTC 57.147 33.333 0.00 0.00 0.00 4.30
482 483 8.805145 TTCCTTTCTAATCTAATCATCCCTCT 57.195 34.615 0.00 0.00 0.00 3.69
483 484 8.200024 TCCTTTCTAATCTAATCATCCCTCTG 57.800 38.462 0.00 0.00 0.00 3.35
484 485 8.013072 TCCTTTCTAATCTAATCATCCCTCTGA 58.987 37.037 0.00 0.00 0.00 3.27
485 486 8.824783 CCTTTCTAATCTAATCATCCCTCTGAT 58.175 37.037 0.00 0.00 37.47 2.90
494 495 9.439461 TCTAATCATCCCTCTGATTTTAAGAGA 57.561 33.333 4.79 0.00 41.89 3.10
499 500 8.654997 TCATCCCTCTGATTTTAAGAGAATAGG 58.345 37.037 2.03 0.00 43.27 2.57
500 501 8.654997 CATCCCTCTGATTTTAAGAGAATAGGA 58.345 37.037 2.03 1.22 43.27 2.94
501 502 8.024145 TCCCTCTGATTTTAAGAGAATAGGAC 57.976 38.462 2.03 0.00 43.27 3.85
502 503 7.071321 TCCCTCTGATTTTAAGAGAATAGGACC 59.929 40.741 2.03 0.00 43.27 4.46
503 504 6.926272 CCTCTGATTTTAAGAGAATAGGACCG 59.074 42.308 2.03 0.00 43.27 4.79
504 505 6.817184 TCTGATTTTAAGAGAATAGGACCGG 58.183 40.000 0.00 0.00 0.00 5.28
505 506 6.610020 TCTGATTTTAAGAGAATAGGACCGGA 59.390 38.462 9.46 0.00 0.00 5.14
506 507 7.290248 TCTGATTTTAAGAGAATAGGACCGGAT 59.710 37.037 9.46 0.00 0.00 4.18
507 508 7.802117 TGATTTTAAGAGAATAGGACCGGATT 58.198 34.615 9.46 0.00 0.00 3.01
508 509 8.272173 TGATTTTAAGAGAATAGGACCGGATTT 58.728 33.333 9.46 0.00 0.00 2.17
509 510 9.121658 GATTTTAAGAGAATAGGACCGGATTTT 57.878 33.333 9.46 0.00 0.00 1.82
515 516 8.451908 AGAGAATAGGACCGGATTTTATTTTG 57.548 34.615 9.46 0.00 0.00 2.44
516 517 8.053355 AGAGAATAGGACCGGATTTTATTTTGT 58.947 33.333 9.46 0.00 0.00 2.83
517 518 8.589701 AGAATAGGACCGGATTTTATTTTGTT 57.410 30.769 9.46 0.00 0.00 2.83
518 519 9.031537 AGAATAGGACCGGATTTTATTTTGTTT 57.968 29.630 9.46 0.00 0.00 2.83
519 520 9.297586 GAATAGGACCGGATTTTATTTTGTTTC 57.702 33.333 9.46 0.00 0.00 2.78
520 521 6.658188 AGGACCGGATTTTATTTTGTTTCA 57.342 33.333 9.46 0.00 0.00 2.69
521 522 7.056844 AGGACCGGATTTTATTTTGTTTCAA 57.943 32.000 9.46 0.00 0.00 2.69
522 523 7.676004 AGGACCGGATTTTATTTTGTTTCAAT 58.324 30.769 9.46 0.00 0.00 2.57
523 524 7.817478 AGGACCGGATTTTATTTTGTTTCAATC 59.183 33.333 9.46 0.00 0.00 2.67
524 525 7.600752 GGACCGGATTTTATTTTGTTTCAATCA 59.399 33.333 9.46 0.00 0.00 2.57
525 526 8.894768 ACCGGATTTTATTTTGTTTCAATCAA 57.105 26.923 9.46 0.00 0.00 2.57
526 527 9.331282 ACCGGATTTTATTTTGTTTCAATCAAA 57.669 25.926 9.46 0.00 33.76 2.69
536 537 9.672086 ATTTTGTTTCAATCAAATCAAGCAATG 57.328 25.926 0.00 0.00 35.25 2.82
537 538 7.789273 TTGTTTCAATCAAATCAAGCAATGT 57.211 28.000 0.00 0.00 0.00 2.71
538 539 8.883954 TTGTTTCAATCAAATCAAGCAATGTA 57.116 26.923 0.00 0.00 0.00 2.29
539 540 9.491675 TTGTTTCAATCAAATCAAGCAATGTAT 57.508 25.926 0.00 0.00 0.00 2.29
540 541 8.927721 TGTTTCAATCAAATCAAGCAATGTATG 58.072 29.630 0.00 0.00 0.00 2.39
541 542 8.928733 GTTTCAATCAAATCAAGCAATGTATGT 58.071 29.630 0.00 0.00 0.00 2.29
542 543 8.468720 TTCAATCAAATCAAGCAATGTATGTG 57.531 30.769 0.00 0.00 0.00 3.21
543 544 7.036829 TCAATCAAATCAAGCAATGTATGTGG 58.963 34.615 0.00 0.00 0.00 4.17
544 545 6.778834 ATCAAATCAAGCAATGTATGTGGA 57.221 33.333 0.00 0.00 0.00 4.02
545 546 6.587206 TCAAATCAAGCAATGTATGTGGAA 57.413 33.333 0.00 0.00 0.00 3.53
546 547 6.623486 TCAAATCAAGCAATGTATGTGGAAG 58.377 36.000 0.00 0.00 0.00 3.46
547 548 6.209192 TCAAATCAAGCAATGTATGTGGAAGT 59.791 34.615 0.00 0.00 0.00 3.01
548 549 7.392953 TCAAATCAAGCAATGTATGTGGAAGTA 59.607 33.333 0.00 0.00 0.00 2.24
549 550 6.683974 ATCAAGCAATGTATGTGGAAGTAC 57.316 37.500 0.00 0.00 0.00 2.73
550 551 4.629634 TCAAGCAATGTATGTGGAAGTACG 59.370 41.667 0.00 0.00 0.00 3.67
551 552 3.531538 AGCAATGTATGTGGAAGTACGG 58.468 45.455 0.00 0.00 0.00 4.02
552 553 3.196901 AGCAATGTATGTGGAAGTACGGA 59.803 43.478 0.00 0.00 0.00 4.69
553 554 4.127171 GCAATGTATGTGGAAGTACGGAT 58.873 43.478 0.00 0.00 0.00 4.18
554 555 4.024893 GCAATGTATGTGGAAGTACGGATG 60.025 45.833 0.00 0.00 0.00 3.51
555 556 3.812156 TGTATGTGGAAGTACGGATGG 57.188 47.619 0.00 0.00 0.00 3.51
556 557 3.367321 TGTATGTGGAAGTACGGATGGA 58.633 45.455 0.00 0.00 0.00 3.41
557 558 2.981859 ATGTGGAAGTACGGATGGAC 57.018 50.000 0.00 0.00 0.00 4.02
558 559 0.528924 TGTGGAAGTACGGATGGACG 59.471 55.000 0.00 0.00 40.31 4.79
559 560 0.804933 GTGGAAGTACGGATGGACGC 60.805 60.000 0.00 0.00 37.37 5.19
560 561 1.252215 TGGAAGTACGGATGGACGCA 61.252 55.000 0.00 0.00 37.37 5.24
561 562 0.804933 GGAAGTACGGATGGACGCAC 60.805 60.000 0.00 0.00 37.37 5.34
562 563 1.138047 GAAGTACGGATGGACGCACG 61.138 60.000 0.00 0.00 35.38 5.34
563 564 3.252484 GTACGGATGGACGCACGC 61.252 66.667 0.00 0.00 37.37 5.34
564 565 4.840288 TACGGATGGACGCACGCG 62.840 66.667 10.36 10.36 46.03 6.01
576 577 4.459331 CACGCGCGGGAAACATGG 62.459 66.667 35.22 7.48 0.00 3.66
580 581 3.140141 CGCGGGAAACATGGCCAT 61.140 61.111 14.09 14.09 0.00 4.40
581 582 2.495866 GCGGGAAACATGGCCATG 59.504 61.111 38.53 38.53 44.15 3.66
593 594 4.818534 CATGGCCATGTATGTGAAGTAC 57.181 45.455 33.68 0.00 34.23 2.73
594 595 2.899976 TGGCCATGTATGTGAAGTACG 58.100 47.619 0.00 0.00 0.00 3.67
595 596 2.210116 GGCCATGTATGTGAAGTACGG 58.790 52.381 0.00 0.00 0.00 4.02
596 597 2.159014 GGCCATGTATGTGAAGTACGGA 60.159 50.000 0.00 0.00 0.00 4.69
597 598 3.494398 GGCCATGTATGTGAAGTACGGAT 60.494 47.826 0.00 0.00 0.00 4.18
598 599 3.494626 GCCATGTATGTGAAGTACGGATG 59.505 47.826 0.00 0.00 0.00 3.51
599 600 4.058124 CCATGTATGTGAAGTACGGATGG 58.942 47.826 0.00 0.00 0.00 3.51
600 601 4.202212 CCATGTATGTGAAGTACGGATGGA 60.202 45.833 0.00 0.00 31.88 3.41
601 602 4.380841 TGTATGTGAAGTACGGATGGAC 57.619 45.455 0.00 0.00 0.00 4.02
602 603 2.579207 ATGTGAAGTACGGATGGACG 57.421 50.000 0.00 0.00 40.31 4.79
603 604 0.528924 TGTGAAGTACGGATGGACGG 59.471 55.000 0.00 0.00 38.39 4.79
604 605 0.179119 GTGAAGTACGGATGGACGGG 60.179 60.000 0.00 0.00 38.39 5.28
605 606 1.324740 TGAAGTACGGATGGACGGGG 61.325 60.000 0.00 0.00 38.39 5.73
606 607 1.000739 AAGTACGGATGGACGGGGA 59.999 57.895 0.00 0.00 38.39 4.81
607 608 1.041447 AAGTACGGATGGACGGGGAG 61.041 60.000 0.00 0.00 38.39 4.30
608 609 2.836360 TACGGATGGACGGGGAGC 60.836 66.667 0.00 0.00 38.39 4.70
609 610 3.665515 TACGGATGGACGGGGAGCA 62.666 63.158 0.00 0.00 38.39 4.26
610 611 2.939760 TACGGATGGACGGGGAGCAT 62.940 60.000 0.00 0.00 38.39 3.79
611 612 2.111878 GGATGGACGGGGAGCATG 59.888 66.667 0.00 0.00 0.00 4.06
612 613 2.746375 GGATGGACGGGGAGCATGT 61.746 63.158 0.00 0.00 0.00 3.21
613 614 1.227674 GATGGACGGGGAGCATGTC 60.228 63.158 0.00 0.00 0.00 3.06
628 629 2.033448 GTCCATTCGCCACACCCA 59.967 61.111 0.00 0.00 0.00 4.51
629 630 2.033448 TCCATTCGCCACACCCAC 59.967 61.111 0.00 0.00 0.00 4.61
631 632 2.358125 CATTCGCCACACCCACGA 60.358 61.111 0.00 0.00 0.00 4.35
635 637 3.991051 CGCCACACCCACGAGACT 61.991 66.667 0.00 0.00 0.00 3.24
898 917 6.294342 CCAGCCATCATCCATAAATACACTTG 60.294 42.308 0.00 0.00 0.00 3.16
923 942 2.092429 TGACAAAAGCACTGACCCTTCT 60.092 45.455 0.00 0.00 0.00 2.85
925 944 1.882623 CAAAAGCACTGACCCTTCTCC 59.117 52.381 0.00 0.00 0.00 3.71
933 952 2.995574 ACCCTTCTCCCACCGTCG 60.996 66.667 0.00 0.00 0.00 5.12
963 982 2.393646 AGAACACTCTCCCTCCATAGC 58.606 52.381 0.00 0.00 0.00 2.97
1150 1169 4.023707 CACCTGAAGATGTTGAGTTGTTCC 60.024 45.833 0.00 0.00 0.00 3.62
1154 1173 4.022935 TGAAGATGTTGAGTTGTTCCATGC 60.023 41.667 0.00 0.00 0.00 4.06
1155 1174 2.485426 AGATGTTGAGTTGTTCCATGCG 59.515 45.455 0.00 0.00 0.00 4.73
1156 1175 1.674359 TGTTGAGTTGTTCCATGCGT 58.326 45.000 0.00 0.00 0.00 5.24
1168 1187 1.474478 TCCATGCGTTGTTGTTGTTGT 59.526 42.857 0.00 0.00 0.00 3.32
1463 1523 1.653151 GTTTCCTATGCCACCTCGAC 58.347 55.000 0.00 0.00 0.00 4.20
1500 1560 1.133025 GGATTGTTGGATGAGCCGTTG 59.867 52.381 0.00 0.00 40.66 4.10
1508 1568 0.389948 GATGAGCCGTTGGTCGTCTT 60.390 55.000 6.70 0.00 46.65 3.01
1930 1991 1.058695 GGATTTTGTCGCGTCGTGTAG 59.941 52.381 5.77 0.00 0.00 2.74
1944 2005 1.399727 CGTGTAGCTTTTTCTTGGGCG 60.400 52.381 0.00 0.00 0.00 6.13
1981 2042 1.364626 CCTGCTGAGTTCGATGGCAC 61.365 60.000 0.00 0.00 0.00 5.01
2018 2079 4.986645 TGCGTGCGCCTGTGACAT 62.987 61.111 14.16 0.00 41.09 3.06
2019 2080 2.813474 GCGTGCGCCTGTGACATA 60.813 61.111 4.18 0.00 34.56 2.29
2020 2081 2.173669 GCGTGCGCCTGTGACATAT 61.174 57.895 4.18 0.00 34.56 1.78
2021 2082 1.637934 CGTGCGCCTGTGACATATG 59.362 57.895 4.18 0.00 0.00 1.78
2022 2083 1.765161 CGTGCGCCTGTGACATATGG 61.765 60.000 4.18 0.00 0.00 2.74
2023 2084 0.744414 GTGCGCCTGTGACATATGGT 60.744 55.000 4.18 0.00 0.00 3.55
2024 2085 0.827368 TGCGCCTGTGACATATGGTA 59.173 50.000 4.18 0.00 0.00 3.25
2025 2086 1.202521 TGCGCCTGTGACATATGGTAG 60.203 52.381 4.18 0.00 0.00 3.18
2026 2087 1.873903 GCGCCTGTGACATATGGTAGG 60.874 57.143 7.80 9.56 0.00 3.18
2027 2088 1.686587 CGCCTGTGACATATGGTAGGA 59.313 52.381 16.31 0.00 0.00 2.94
2028 2089 2.288457 CGCCTGTGACATATGGTAGGAG 60.288 54.545 16.31 11.35 0.00 3.69
2029 2090 2.700897 GCCTGTGACATATGGTAGGAGT 59.299 50.000 16.31 0.00 0.00 3.85
2030 2091 3.895656 GCCTGTGACATATGGTAGGAGTA 59.104 47.826 16.31 0.00 0.00 2.59
2031 2092 4.021894 GCCTGTGACATATGGTAGGAGTAG 60.022 50.000 16.31 2.26 0.00 2.57
2032 2093 5.141182 CCTGTGACATATGGTAGGAGTAGT 58.859 45.833 7.80 0.00 0.00 2.73
2040 2101 7.295340 ACATATGGTAGGAGTAGTATGTGTGA 58.705 38.462 7.80 0.00 33.07 3.58
2041 2102 7.783119 ACATATGGTAGGAGTAGTATGTGTGAA 59.217 37.037 7.80 0.00 33.07 3.18
2057 2118 3.088532 TGTGAAAGGCAGGCGATTATTT 58.911 40.909 0.00 0.00 0.00 1.40
2058 2119 3.509575 TGTGAAAGGCAGGCGATTATTTT 59.490 39.130 0.00 0.00 0.00 1.82
2059 2120 4.021544 TGTGAAAGGCAGGCGATTATTTTT 60.022 37.500 0.00 0.00 0.00 1.94
2060 2121 4.562789 GTGAAAGGCAGGCGATTATTTTTC 59.437 41.667 0.00 0.00 0.00 2.29
2061 2122 3.801114 AAGGCAGGCGATTATTTTTCC 57.199 42.857 0.00 0.00 0.00 3.13
2062 2123 3.018423 AGGCAGGCGATTATTTTTCCT 57.982 42.857 0.00 0.00 0.00 3.36
2073 2134 5.957796 CGATTATTTTTCCTTTTCTCGTCGG 59.042 40.000 0.00 0.00 0.00 4.79
2091 2152 2.604152 GTTGGGTTGTGGGGGTCA 59.396 61.111 0.00 0.00 0.00 4.02
2358 2420 2.107950 TTTGTACTGGCCTTCGGATG 57.892 50.000 3.32 0.00 0.00 3.51
2364 2426 3.467226 GGCCTTCGGATGACGGGA 61.467 66.667 0.00 0.00 44.45 5.14
2372 2434 1.684983 TCGGATGACGGGATAAGAACC 59.315 52.381 0.00 0.00 44.45 3.62
2415 2477 3.064545 CGGCAGGATCTCATGTTCTTTTC 59.935 47.826 0.00 0.00 0.00 2.29
2420 2482 4.946157 AGGATCTCATGTTCTTTTCGCATT 59.054 37.500 0.00 0.00 0.00 3.56
2423 2485 5.687770 TCTCATGTTCTTTTCGCATTCAA 57.312 34.783 0.00 0.00 0.00 2.69
2453 2515 0.108041 ACGGGTTACCTGCATTACCG 60.108 55.000 10.61 0.30 44.86 4.02
2454 2516 0.108041 CGGGTTACCTGCATTACCGT 60.108 55.000 0.00 0.00 35.47 4.83
2455 2517 1.676615 CGGGTTACCTGCATTACCGTT 60.677 52.381 0.00 0.00 35.47 4.44
2456 2518 2.418471 CGGGTTACCTGCATTACCGTTA 60.418 50.000 0.00 0.00 35.47 3.18
2457 2519 3.608796 GGGTTACCTGCATTACCGTTAA 58.391 45.455 0.00 0.00 0.00 2.01
2465 2527 4.261031 CCTGCATTACCGTTAATAACCAGC 60.261 45.833 0.00 0.00 0.00 4.85
2466 2528 3.628487 TGCATTACCGTTAATAACCAGCC 59.372 43.478 0.00 0.00 0.00 4.85
2512 2574 6.687105 CCGTTTAGTTTCTCTTTTCACTGTTG 59.313 38.462 0.00 0.00 0.00 3.33
2518 2580 1.532868 CTCTTTTCACTGTTGGGCTCG 59.467 52.381 0.00 0.00 0.00 5.03
2575 2637 1.213537 GTGGGAACGGTCGAATCGA 59.786 57.895 14.96 0.00 0.00 3.59
2587 2649 3.936372 TCGAATCGACTGTTTTCTCCT 57.064 42.857 0.00 0.00 0.00 3.69
2599 2661 0.818296 TTTCTCCTAGTCAGGCTCGC 59.182 55.000 0.00 0.00 42.30 5.03
2620 2682 1.174783 GCGTACAGAGGAGAGGAACA 58.825 55.000 0.00 0.00 0.00 3.18
2633 2695 2.260434 GAACACCGCACCGAGCTA 59.740 61.111 0.00 0.00 42.61 3.32
2643 2705 0.872021 CACCGAGCTAATGCGAGGAC 60.872 60.000 10.55 0.00 45.42 3.85
2685 2747 2.795389 GCGTCGAAAAAGCGGCAC 60.795 61.111 1.45 0.00 35.20 5.01
2715 2777 3.833645 CACCTCCCGCCGAATCGA 61.834 66.667 3.36 0.00 0.00 3.59
2718 2780 2.183300 CTCCCGCCGAATCGAACA 59.817 61.111 3.36 0.00 0.00 3.18
2760 2822 0.034767 CTCCTGCTGATTCCTTGCCA 60.035 55.000 0.00 0.00 0.00 4.92
2773 2835 2.843912 CTTGCCACCATCTCCCCCAC 62.844 65.000 0.00 0.00 0.00 4.61
2774 2836 3.338250 GCCACCATCTCCCCCACA 61.338 66.667 0.00 0.00 0.00 4.17
2782 2844 1.201429 ATCTCCCCCACACGCTCTTT 61.201 55.000 0.00 0.00 0.00 2.52
2786 2848 1.966451 CCCCACACGCTCTTTGTCC 60.966 63.158 0.00 0.00 0.00 4.02
2788 2850 1.227823 CCACACGCTCTTTGTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
2798 2860 1.073125 TCTTTGTCCCAGGCGATTTCA 59.927 47.619 0.00 0.00 0.00 2.69
2800 2862 1.462616 TTGTCCCAGGCGATTTCATG 58.537 50.000 0.00 0.00 0.00 3.07
2803 2865 0.107214 TCCCAGGCGATTTCATGGAC 60.107 55.000 0.00 0.00 34.60 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.814248 GCAAAGTGTCGGGGAAGAGTT 60.814 52.381 0.00 0.00 0.00 3.01
8 9 0.250338 GCAAAGTGTCGGGGAAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
10 11 0.250295 CAGCAAAGTGTCGGGGAAGA 60.250 55.000 0.00 0.00 0.00 2.87
11 12 1.237285 CCAGCAAAGTGTCGGGGAAG 61.237 60.000 0.00 0.00 0.00 3.46
12 13 1.228124 CCAGCAAAGTGTCGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
13 14 1.488705 ATCCAGCAAAGTGTCGGGGA 61.489 55.000 0.00 0.00 0.00 4.81
14 15 1.002134 ATCCAGCAAAGTGTCGGGG 60.002 57.895 0.00 0.00 0.00 5.73
15 16 1.361668 CGATCCAGCAAAGTGTCGGG 61.362 60.000 0.00 0.00 0.00 5.14
16 17 1.361668 CCGATCCAGCAAAGTGTCGG 61.362 60.000 0.00 0.00 41.98 4.79
17 18 0.389817 TCCGATCCAGCAAAGTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
18 19 1.363744 CTCCGATCCAGCAAAGTGTC 58.636 55.000 0.00 0.00 0.00 3.67
19 20 0.036010 CCTCCGATCCAGCAAAGTGT 60.036 55.000 0.00 0.00 0.00 3.55
20 21 1.372087 GCCTCCGATCCAGCAAAGTG 61.372 60.000 0.00 0.00 0.00 3.16
21 22 1.078143 GCCTCCGATCCAGCAAAGT 60.078 57.895 0.00 0.00 0.00 2.66
22 23 1.821332 GGCCTCCGATCCAGCAAAG 60.821 63.158 0.00 0.00 0.00 2.77
23 24 2.272146 GGCCTCCGATCCAGCAAA 59.728 61.111 0.00 0.00 0.00 3.68
46 47 1.002142 ACACGTTCAACTCGATGACGA 60.002 47.619 13.88 0.00 46.56 4.20
47 48 1.122501 CACACGTTCAACTCGATGACG 59.877 52.381 0.00 8.47 41.26 4.35
48 49 1.136611 GCACACGTTCAACTCGATGAC 60.137 52.381 0.00 0.00 0.00 3.06
49 50 1.136690 GCACACGTTCAACTCGATGA 58.863 50.000 0.00 0.00 0.00 2.92
50 51 1.139989 AGCACACGTTCAACTCGATG 58.860 50.000 0.00 0.00 0.00 3.84
51 52 2.228103 TCTAGCACACGTTCAACTCGAT 59.772 45.455 0.00 0.00 0.00 3.59
52 53 1.605232 TCTAGCACACGTTCAACTCGA 59.395 47.619 0.00 0.00 0.00 4.04
53 54 2.046283 TCTAGCACACGTTCAACTCG 57.954 50.000 0.00 0.00 0.00 4.18
54 55 3.381949 AGTTCTAGCACACGTTCAACTC 58.618 45.455 0.00 0.00 0.00 3.01
55 56 3.381949 GAGTTCTAGCACACGTTCAACT 58.618 45.455 0.00 0.00 0.00 3.16
56 57 2.153247 CGAGTTCTAGCACACGTTCAAC 59.847 50.000 4.36 0.00 0.00 3.18
57 58 2.390938 CGAGTTCTAGCACACGTTCAA 58.609 47.619 4.36 0.00 0.00 2.69
58 59 1.335597 CCGAGTTCTAGCACACGTTCA 60.336 52.381 10.84 0.00 0.00 3.18
59 60 1.068748 TCCGAGTTCTAGCACACGTTC 60.069 52.381 10.84 0.00 0.00 3.95
60 61 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
61 62 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
62 63 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
63 64 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
64 65 0.888619 CACCTCCGAGTTCTAGCACA 59.111 55.000 0.00 0.00 0.00 4.57
65 66 0.458716 GCACCTCCGAGTTCTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
66 67 1.605058 GGCACCTCCGAGTTCTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
67 68 1.142097 GGCACCTCCGAGTTCTAGC 59.858 63.158 0.00 0.00 0.00 3.42
77 78 1.447314 CCGAAACTACGGCACCTCC 60.447 63.158 0.00 0.00 46.20 4.30
78 79 4.180496 CCGAAACTACGGCACCTC 57.820 61.111 0.00 0.00 46.20 3.85
85 86 1.320555 CGATCAAGCACCGAAACTACG 59.679 52.381 0.00 0.00 0.00 3.51
86 87 1.659098 CCGATCAAGCACCGAAACTAC 59.341 52.381 0.00 0.00 0.00 2.73
87 88 1.274167 ACCGATCAAGCACCGAAACTA 59.726 47.619 0.00 0.00 0.00 2.24
88 89 0.034896 ACCGATCAAGCACCGAAACT 59.965 50.000 0.00 0.00 0.00 2.66
89 90 0.442699 GACCGATCAAGCACCGAAAC 59.557 55.000 0.00 0.00 0.00 2.78
90 91 1.011968 CGACCGATCAAGCACCGAAA 61.012 55.000 0.00 0.00 0.00 3.46
91 92 1.445410 CGACCGATCAAGCACCGAA 60.445 57.895 0.00 0.00 0.00 4.30
92 93 2.180769 CGACCGATCAAGCACCGA 59.819 61.111 0.00 0.00 0.00 4.69
93 94 2.885644 CCGACCGATCAAGCACCG 60.886 66.667 0.00 0.00 0.00 4.94
94 95 2.511600 CCCGACCGATCAAGCACC 60.512 66.667 0.00 0.00 0.00 5.01
95 96 3.195698 GCCCGACCGATCAAGCAC 61.196 66.667 0.00 0.00 0.00 4.40
96 97 4.467084 GGCCCGACCGATCAAGCA 62.467 66.667 0.00 0.00 0.00 3.91
114 115 2.674852 TGATGTAGTCGTACGTCTCCAC 59.325 50.000 18.09 12.42 43.23 4.02
115 116 2.976589 TGATGTAGTCGTACGTCTCCA 58.023 47.619 18.09 13.77 43.23 3.86
116 117 3.486542 GGTTGATGTAGTCGTACGTCTCC 60.487 52.174 18.09 8.18 43.23 3.71
117 118 3.125829 TGGTTGATGTAGTCGTACGTCTC 59.874 47.826 18.09 10.69 43.23 3.36
118 119 3.076621 TGGTTGATGTAGTCGTACGTCT 58.923 45.455 18.54 18.54 43.23 4.18
119 120 3.476295 TGGTTGATGTAGTCGTACGTC 57.524 47.619 16.05 10.06 43.16 4.34
120 121 3.921119 TTGGTTGATGTAGTCGTACGT 57.079 42.857 16.05 0.00 30.95 3.57
121 122 3.058520 CGTTTGGTTGATGTAGTCGTACG 59.941 47.826 9.53 9.53 30.95 3.67
122 123 3.181537 GCGTTTGGTTGATGTAGTCGTAC 60.182 47.826 0.00 0.00 0.00 3.67
123 124 2.988493 GCGTTTGGTTGATGTAGTCGTA 59.012 45.455 0.00 0.00 0.00 3.43
124 125 1.796459 GCGTTTGGTTGATGTAGTCGT 59.204 47.619 0.00 0.00 0.00 4.34
125 126 2.066262 AGCGTTTGGTTGATGTAGTCG 58.934 47.619 0.00 0.00 0.00 4.18
126 127 3.120304 GGAAGCGTTTGGTTGATGTAGTC 60.120 47.826 0.00 0.00 35.57 2.59
127 128 2.812011 GGAAGCGTTTGGTTGATGTAGT 59.188 45.455 0.00 0.00 35.57 2.73
128 129 2.159707 CGGAAGCGTTTGGTTGATGTAG 60.160 50.000 0.00 0.00 35.57 2.74
129 130 1.801771 CGGAAGCGTTTGGTTGATGTA 59.198 47.619 0.00 0.00 35.57 2.29
130 131 0.591170 CGGAAGCGTTTGGTTGATGT 59.409 50.000 0.00 0.00 35.57 3.06
131 132 0.591170 ACGGAAGCGTTTGGTTGATG 59.409 50.000 0.00 0.00 35.57 3.07
132 133 1.001815 CAACGGAAGCGTTTGGTTGAT 60.002 47.619 15.84 0.00 40.16 2.57
133 134 0.378962 CAACGGAAGCGTTTGGTTGA 59.621 50.000 15.84 0.00 40.16 3.18
134 135 0.099791 ACAACGGAAGCGTTTGGTTG 59.900 50.000 17.97 17.97 42.63 3.77
135 136 0.379316 GACAACGGAAGCGTTTGGTT 59.621 50.000 0.00 0.00 38.83 3.67
136 137 1.768112 CGACAACGGAAGCGTTTGGT 61.768 55.000 0.00 0.00 35.72 3.67
137 138 1.083015 CGACAACGGAAGCGTTTGG 60.083 57.895 0.00 0.00 35.72 3.28
138 139 0.511221 ATCGACAACGGAAGCGTTTG 59.489 50.000 0.00 0.00 40.21 2.93
139 140 0.788391 GATCGACAACGGAAGCGTTT 59.212 50.000 0.00 0.00 40.21 3.60
140 141 0.038526 AGATCGACAACGGAAGCGTT 60.039 50.000 0.00 0.00 40.21 4.84
141 142 0.806868 TAGATCGACAACGGAAGCGT 59.193 50.000 0.00 0.00 40.21 5.07
142 143 1.189403 GTAGATCGACAACGGAAGCG 58.811 55.000 0.53 0.00 40.21 4.68
143 144 1.189403 CGTAGATCGACAACGGAAGC 58.811 55.000 6.77 0.00 42.86 3.86
144 145 2.539142 CCTCGTAGATCGACAACGGAAG 60.539 54.545 13.88 6.87 44.01 3.46
145 146 1.399440 CCTCGTAGATCGACAACGGAA 59.601 52.381 13.88 0.00 44.01 4.30
146 147 1.012086 CCTCGTAGATCGACAACGGA 58.988 55.000 13.88 0.00 44.01 4.69
147 148 0.731417 ACCTCGTAGATCGACAACGG 59.269 55.000 13.88 5.42 44.01 4.44
148 149 2.596112 CGTACCTCGTAGATCGACAACG 60.596 54.545 6.77 9.13 44.01 4.10
149 150 2.966509 CGTACCTCGTAGATCGACAAC 58.033 52.381 6.77 0.00 44.01 3.32
161 162 3.196463 AGAGTGTGATCTACGTACCTCG 58.804 50.000 0.00 0.00 46.00 4.63
162 163 3.560896 GGAGAGTGTGATCTACGTACCTC 59.439 52.174 0.00 0.00 0.00 3.85
163 164 3.543665 GGAGAGTGTGATCTACGTACCT 58.456 50.000 0.00 0.00 0.00 3.08
164 165 2.617774 GGGAGAGTGTGATCTACGTACC 59.382 54.545 0.00 0.62 30.07 3.34
165 166 2.617774 GGGGAGAGTGTGATCTACGTAC 59.382 54.545 0.00 0.00 30.07 3.67
166 167 2.508716 AGGGGAGAGTGTGATCTACGTA 59.491 50.000 0.00 0.00 30.07 3.57
167 168 1.285373 AGGGGAGAGTGTGATCTACGT 59.715 52.381 0.00 0.00 30.07 3.57
168 169 1.950909 GAGGGGAGAGTGTGATCTACG 59.049 57.143 0.00 0.00 30.07 3.51
169 170 1.950909 CGAGGGGAGAGTGTGATCTAC 59.049 57.143 0.00 0.00 0.00 2.59
170 171 1.564818 ACGAGGGGAGAGTGTGATCTA 59.435 52.381 0.00 0.00 0.00 1.98
171 172 0.333312 ACGAGGGGAGAGTGTGATCT 59.667 55.000 0.00 0.00 0.00 2.75
172 173 1.134965 CAACGAGGGGAGAGTGTGATC 60.135 57.143 0.00 0.00 0.00 2.92
173 174 0.898320 CAACGAGGGGAGAGTGTGAT 59.102 55.000 0.00 0.00 0.00 3.06
174 175 1.816863 GCAACGAGGGGAGAGTGTGA 61.817 60.000 0.00 0.00 0.00 3.58
175 176 1.374758 GCAACGAGGGGAGAGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
176 177 0.251653 TAGCAACGAGGGGAGAGTGT 60.252 55.000 0.00 0.00 0.00 3.55
177 178 1.115467 ATAGCAACGAGGGGAGAGTG 58.885 55.000 0.00 0.00 0.00 3.51
178 179 1.115467 CATAGCAACGAGGGGAGAGT 58.885 55.000 0.00 0.00 0.00 3.24
179 180 0.249657 GCATAGCAACGAGGGGAGAG 60.250 60.000 0.00 0.00 0.00 3.20
180 181 0.975556 TGCATAGCAACGAGGGGAGA 60.976 55.000 0.00 0.00 34.76 3.71
181 182 0.107456 ATGCATAGCAACGAGGGGAG 59.893 55.000 0.00 0.00 43.62 4.30
182 183 0.106708 GATGCATAGCAACGAGGGGA 59.893 55.000 0.00 0.00 43.62 4.81
183 184 0.179048 TGATGCATAGCAACGAGGGG 60.179 55.000 0.00 0.00 43.62 4.79
184 185 0.940126 GTGATGCATAGCAACGAGGG 59.060 55.000 0.00 0.00 43.62 4.30
185 186 1.655484 TGTGATGCATAGCAACGAGG 58.345 50.000 0.00 0.00 43.62 4.63
186 187 2.867975 TCATGTGATGCATAGCAACGAG 59.132 45.455 0.00 0.00 43.62 4.18
187 188 2.903798 TCATGTGATGCATAGCAACGA 58.096 42.857 0.00 0.66 43.62 3.85
188 189 3.497262 AGATCATGTGATGCATAGCAACG 59.503 43.478 0.00 0.00 43.62 4.10
189 190 5.212934 CAAGATCATGTGATGCATAGCAAC 58.787 41.667 0.00 0.00 43.62 4.17
190 191 4.261447 GCAAGATCATGTGATGCATAGCAA 60.261 41.667 0.00 0.00 43.62 3.91
191 192 3.252458 GCAAGATCATGTGATGCATAGCA 59.748 43.478 0.00 1.62 44.86 3.49
192 193 3.667166 CGCAAGATCATGTGATGCATAGC 60.667 47.826 5.58 0.00 43.02 2.97
193 194 3.497262 ACGCAAGATCATGTGATGCATAG 59.503 43.478 17.70 0.00 43.62 2.23
194 195 3.249080 CACGCAAGATCATGTGATGCATA 59.751 43.478 17.70 0.00 43.62 3.14
195 196 2.032924 CACGCAAGATCATGTGATGCAT 59.967 45.455 17.70 0.00 43.62 3.96
196 197 1.399089 CACGCAAGATCATGTGATGCA 59.601 47.619 17.70 0.00 43.62 3.96
197 198 1.399440 ACACGCAAGATCATGTGATGC 59.601 47.619 17.70 6.12 43.62 3.91
198 199 2.790123 GCACACGCAAGATCATGTGATG 60.790 50.000 17.70 14.83 41.52 3.07
199 200 1.399440 GCACACGCAAGATCATGTGAT 59.601 47.619 17.70 3.24 41.52 3.06
200 201 0.798159 GCACACGCAAGATCATGTGA 59.202 50.000 17.70 0.00 41.52 3.58
201 202 0.519792 CGCACACGCAAGATCATGTG 60.520 55.000 9.82 9.82 41.80 3.21
202 203 0.950555 ACGCACACGCAAGATCATGT 60.951 50.000 0.00 0.00 45.53 3.21
203 204 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
204 205 1.135112 TCTACGCACACGCAAGATCAT 60.135 47.619 0.00 0.00 45.53 2.45
205 206 0.242555 TCTACGCACACGCAAGATCA 59.757 50.000 0.00 0.00 45.53 2.92
206 207 1.346365 TTCTACGCACACGCAAGATC 58.654 50.000 0.00 0.00 45.53 2.75
207 208 2.010145 ATTCTACGCACACGCAAGAT 57.990 45.000 0.00 0.00 45.53 2.40
208 209 1.790755 AATTCTACGCACACGCAAGA 58.209 45.000 0.00 0.00 45.53 3.02
209 210 2.594529 AAATTCTACGCACACGCAAG 57.405 45.000 0.00 0.00 45.53 4.01
210 211 3.341857 AAAAATTCTACGCACACGCAA 57.658 38.095 0.00 0.00 45.53 4.85
229 230 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
230 231 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
231 232 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
232 233 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
233 234 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
234 235 5.240121 TCTGTTGGGGAACGTAGTAATTTC 58.760 41.667 0.00 0.00 45.00 2.17
235 236 5.231702 TCTGTTGGGGAACGTAGTAATTT 57.768 39.130 0.00 0.00 45.00 1.82
236 237 4.895668 TCTGTTGGGGAACGTAGTAATT 57.104 40.909 0.00 0.00 45.00 1.40
237 238 4.529377 TCTTCTGTTGGGGAACGTAGTAAT 59.471 41.667 0.00 0.00 45.00 1.89
238 239 3.896888 TCTTCTGTTGGGGAACGTAGTAA 59.103 43.478 0.00 0.00 45.00 2.24
239 240 3.499338 TCTTCTGTTGGGGAACGTAGTA 58.501 45.455 0.00 0.00 45.00 1.82
241 242 3.611766 ATCTTCTGTTGGGGAACGTAG 57.388 47.619 0.00 0.00 0.00 3.51
242 243 3.118884 GCTATCTTCTGTTGGGGAACGTA 60.119 47.826 0.00 0.00 0.00 3.57
243 244 2.354805 GCTATCTTCTGTTGGGGAACGT 60.355 50.000 0.00 0.00 0.00 3.99
244 245 2.280628 GCTATCTTCTGTTGGGGAACG 58.719 52.381 0.00 0.00 0.00 3.95
245 246 2.026262 TGGCTATCTTCTGTTGGGGAAC 60.026 50.000 0.00 0.00 0.00 3.62
246 247 2.274542 TGGCTATCTTCTGTTGGGGAA 58.725 47.619 0.00 0.00 0.00 3.97
247 248 1.965414 TGGCTATCTTCTGTTGGGGA 58.035 50.000 0.00 0.00 0.00 4.81
248 249 2.369394 GTTGGCTATCTTCTGTTGGGG 58.631 52.381 0.00 0.00 0.00 4.96
249 250 2.009774 CGTTGGCTATCTTCTGTTGGG 58.990 52.381 0.00 0.00 0.00 4.12
250 251 2.972625 TCGTTGGCTATCTTCTGTTGG 58.027 47.619 0.00 0.00 0.00 3.77
251 252 4.183865 TCATCGTTGGCTATCTTCTGTTG 58.816 43.478 0.00 0.00 0.00 3.33
252 253 4.471904 TCATCGTTGGCTATCTTCTGTT 57.528 40.909 0.00 0.00 0.00 3.16
253 254 4.375272 CATCATCGTTGGCTATCTTCTGT 58.625 43.478 0.00 0.00 0.00 3.41
254 255 3.744942 CCATCATCGTTGGCTATCTTCTG 59.255 47.826 0.00 0.00 0.00 3.02
255 256 3.389329 ACCATCATCGTTGGCTATCTTCT 59.611 43.478 0.00 0.00 37.81 2.85
256 257 3.733337 ACCATCATCGTTGGCTATCTTC 58.267 45.455 0.00 0.00 37.81 2.87
257 258 3.845781 ACCATCATCGTTGGCTATCTT 57.154 42.857 0.00 0.00 37.81 2.40
258 259 3.845781 AACCATCATCGTTGGCTATCT 57.154 42.857 0.00 0.00 37.81 1.98
259 260 3.251004 GGAAACCATCATCGTTGGCTATC 59.749 47.826 0.00 0.00 37.81 2.08
260 261 3.214328 GGAAACCATCATCGTTGGCTAT 58.786 45.455 0.00 0.00 37.81 2.97
261 262 2.639065 GGAAACCATCATCGTTGGCTA 58.361 47.619 0.00 0.00 37.81 3.93
262 263 1.463674 GGAAACCATCATCGTTGGCT 58.536 50.000 0.00 0.00 37.81 4.75
289 290 2.825836 CCTGTTCCGGCATCCTGC 60.826 66.667 0.00 0.00 44.08 4.85
297 298 1.000896 AATTGGGAGCCTGTTCCGG 60.001 57.895 0.00 0.00 38.17 5.14
298 299 1.315257 CCAATTGGGAGCCTGTTCCG 61.315 60.000 17.36 0.00 40.01 4.30
299 300 0.251787 ACCAATTGGGAGCCTGTTCC 60.252 55.000 27.89 0.00 41.15 3.62
300 301 1.632589 AACCAATTGGGAGCCTGTTC 58.367 50.000 27.89 0.00 41.15 3.18
301 302 2.101640 AAACCAATTGGGAGCCTGTT 57.898 45.000 27.89 8.83 41.15 3.16
302 303 2.101640 AAAACCAATTGGGAGCCTGT 57.898 45.000 27.89 2.33 41.15 4.00
303 304 2.610232 CGAAAAACCAATTGGGAGCCTG 60.610 50.000 27.89 10.12 41.15 4.85
304 305 1.618343 CGAAAAACCAATTGGGAGCCT 59.382 47.619 27.89 8.61 41.15 4.58
305 306 1.343142 ACGAAAAACCAATTGGGAGCC 59.657 47.619 27.89 11.80 41.15 4.70
306 307 2.403259 CACGAAAAACCAATTGGGAGC 58.597 47.619 27.89 11.39 41.15 4.70
307 308 2.866065 GCCACGAAAAACCAATTGGGAG 60.866 50.000 27.89 13.87 41.15 4.30
308 309 1.069358 GCCACGAAAAACCAATTGGGA 59.931 47.619 27.89 0.00 41.15 4.37
309 310 1.069978 AGCCACGAAAAACCAATTGGG 59.930 47.619 27.89 11.64 44.81 4.12
310 311 2.524569 AGCCACGAAAAACCAATTGG 57.475 45.000 23.31 23.31 42.17 3.16
311 312 6.093495 TCTCTATAGCCACGAAAAACCAATTG 59.907 38.462 0.00 0.00 0.00 2.32
312 313 6.093633 GTCTCTATAGCCACGAAAAACCAATT 59.906 38.462 0.00 0.00 0.00 2.32
313 314 5.585047 GTCTCTATAGCCACGAAAAACCAAT 59.415 40.000 0.00 0.00 0.00 3.16
314 315 4.933400 GTCTCTATAGCCACGAAAAACCAA 59.067 41.667 0.00 0.00 0.00 3.67
315 316 4.222145 AGTCTCTATAGCCACGAAAAACCA 59.778 41.667 0.00 0.00 0.00 3.67
316 317 4.756502 AGTCTCTATAGCCACGAAAAACC 58.243 43.478 0.00 0.00 0.00 3.27
317 318 5.446073 GCAAGTCTCTATAGCCACGAAAAAC 60.446 44.000 0.00 0.00 0.00 2.43
318 319 4.630069 GCAAGTCTCTATAGCCACGAAAAA 59.370 41.667 0.00 0.00 0.00 1.94
319 320 4.181578 GCAAGTCTCTATAGCCACGAAAA 58.818 43.478 0.00 0.00 0.00 2.29
320 321 3.733988 CGCAAGTCTCTATAGCCACGAAA 60.734 47.826 0.00 0.00 0.00 3.46
321 322 2.223502 CGCAAGTCTCTATAGCCACGAA 60.224 50.000 0.00 0.00 0.00 3.85
322 323 1.333931 CGCAAGTCTCTATAGCCACGA 59.666 52.381 0.00 0.00 0.00 4.35
323 324 1.600663 CCGCAAGTCTCTATAGCCACG 60.601 57.143 0.00 0.00 0.00 4.94
324 325 1.870167 GCCGCAAGTCTCTATAGCCAC 60.870 57.143 0.00 0.00 0.00 5.01
325 326 0.389391 GCCGCAAGTCTCTATAGCCA 59.611 55.000 0.00 0.00 0.00 4.75
326 327 0.664767 CGCCGCAAGTCTCTATAGCC 60.665 60.000 0.00 0.00 0.00 3.93
327 328 0.664767 CCGCCGCAAGTCTCTATAGC 60.665 60.000 0.00 0.00 0.00 2.97
328 329 0.664767 GCCGCCGCAAGTCTCTATAG 60.665 60.000 0.00 0.00 34.03 1.31
329 330 1.362717 GCCGCCGCAAGTCTCTATA 59.637 57.895 0.00 0.00 34.03 1.31
330 331 2.107141 GCCGCCGCAAGTCTCTAT 59.893 61.111 0.00 0.00 34.03 1.98
331 332 4.492160 CGCCGCCGCAAGTCTCTA 62.492 66.667 0.00 0.00 34.03 2.43
348 349 5.548181 AATAAACCTAGATCGGGAGTTCC 57.452 43.478 13.39 0.00 0.00 3.62
349 350 6.702282 CAGAAATAAACCTAGATCGGGAGTTC 59.298 42.308 13.39 7.18 0.00 3.01
350 351 6.408206 CCAGAAATAAACCTAGATCGGGAGTT 60.408 42.308 13.39 9.49 0.00 3.01
351 352 5.070580 CCAGAAATAAACCTAGATCGGGAGT 59.929 44.000 13.39 4.64 0.00 3.85
352 353 5.511545 CCCAGAAATAAACCTAGATCGGGAG 60.512 48.000 13.39 0.78 0.00 4.30
353 354 4.347000 CCCAGAAATAAACCTAGATCGGGA 59.653 45.833 13.39 0.00 0.00 5.14
354 355 4.505039 CCCCAGAAATAAACCTAGATCGGG 60.505 50.000 6.28 6.28 0.00 5.14
355 356 4.102681 ACCCCAGAAATAAACCTAGATCGG 59.897 45.833 0.00 0.00 0.00 4.18
356 357 5.291905 ACCCCAGAAATAAACCTAGATCG 57.708 43.478 0.00 0.00 0.00 3.69
357 358 7.956328 AAAACCCCAGAAATAAACCTAGATC 57.044 36.000 0.00 0.00 0.00 2.75
382 383 9.445973 TGGGGAGCCAAAAATTTCTATAAATAT 57.554 29.630 0.00 0.00 34.12 1.28
383 384 8.846423 TGGGGAGCCAAAAATTTCTATAAATA 57.154 30.769 0.00 0.00 34.12 1.40
384 385 7.747809 TGGGGAGCCAAAAATTTCTATAAAT 57.252 32.000 0.00 0.00 36.87 1.40
385 386 7.563906 CATGGGGAGCCAAAAATTTCTATAAA 58.436 34.615 0.00 0.00 0.00 1.40
386 387 6.407979 GCATGGGGAGCCAAAAATTTCTATAA 60.408 38.462 0.00 0.00 0.00 0.98
387 388 5.070313 GCATGGGGAGCCAAAAATTTCTATA 59.930 40.000 0.00 0.00 0.00 1.31
388 389 4.141642 GCATGGGGAGCCAAAAATTTCTAT 60.142 41.667 0.00 0.00 0.00 1.98
389 390 3.197549 GCATGGGGAGCCAAAAATTTCTA 59.802 43.478 0.00 0.00 0.00 2.10
390 391 2.026915 GCATGGGGAGCCAAAAATTTCT 60.027 45.455 0.00 0.00 0.00 2.52
391 392 2.026915 AGCATGGGGAGCCAAAAATTTC 60.027 45.455 0.00 0.00 0.00 2.17
392 393 1.987368 AGCATGGGGAGCCAAAAATTT 59.013 42.857 0.00 0.00 0.00 1.82
393 394 1.660242 AGCATGGGGAGCCAAAAATT 58.340 45.000 0.00 0.00 0.00 1.82
394 395 1.556451 GAAGCATGGGGAGCCAAAAAT 59.444 47.619 0.00 0.00 0.00 1.82
395 396 0.975887 GAAGCATGGGGAGCCAAAAA 59.024 50.000 0.00 0.00 0.00 1.94
396 397 0.904394 GGAAGCATGGGGAGCCAAAA 60.904 55.000 0.00 0.00 0.00 2.44
397 398 1.305213 GGAAGCATGGGGAGCCAAA 60.305 57.895 0.00 0.00 0.00 3.28
398 399 1.877672 ATGGAAGCATGGGGAGCCAA 61.878 55.000 0.00 0.00 0.00 4.52
399 400 2.288642 GATGGAAGCATGGGGAGCCA 62.289 60.000 0.00 0.00 0.00 4.75
400 401 1.530183 GATGGAAGCATGGGGAGCC 60.530 63.158 0.00 0.00 0.00 4.70
401 402 1.530183 GGATGGAAGCATGGGGAGC 60.530 63.158 0.00 0.00 0.00 4.70
402 403 1.228063 CGGATGGAAGCATGGGGAG 60.228 63.158 0.00 0.00 0.00 4.30
403 404 2.000701 ACGGATGGAAGCATGGGGA 61.001 57.895 0.00 0.00 0.00 4.81
404 405 1.825191 CACGGATGGAAGCATGGGG 60.825 63.158 0.00 0.00 0.00 4.96
405 406 2.484062 GCACGGATGGAAGCATGGG 61.484 63.158 0.00 0.00 0.00 4.00
406 407 1.442526 GAGCACGGATGGAAGCATGG 61.443 60.000 0.00 0.00 0.00 3.66
407 408 1.442526 GGAGCACGGATGGAAGCATG 61.443 60.000 0.00 0.00 0.00 4.06
408 409 1.153086 GGAGCACGGATGGAAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
409 410 2.268920 GGAGCACGGATGGAAGCA 59.731 61.111 0.00 0.00 0.00 3.91
410 411 2.514824 GGGAGCACGGATGGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
411 412 1.450312 GTGGGAGCACGGATGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
412 413 1.488705 AAGTGGGAGCACGGATGGAA 61.489 55.000 0.00 0.00 0.00 3.53
413 414 1.488705 AAAGTGGGAGCACGGATGGA 61.489 55.000 0.00 0.00 0.00 3.41
414 415 0.251916 TAAAGTGGGAGCACGGATGG 59.748 55.000 0.00 0.00 0.00 3.51
415 416 2.213499 GATAAAGTGGGAGCACGGATG 58.787 52.381 0.00 0.00 0.00 3.51
416 417 1.141053 GGATAAAGTGGGAGCACGGAT 59.859 52.381 0.00 0.00 0.00 4.18
417 418 0.539986 GGATAAAGTGGGAGCACGGA 59.460 55.000 0.00 0.00 0.00 4.69
418 419 0.541863 AGGATAAAGTGGGAGCACGG 59.458 55.000 0.00 0.00 0.00 4.94
419 420 2.798499 CGTAGGATAAAGTGGGAGCACG 60.798 54.545 0.00 0.00 0.00 5.34
420 421 2.429610 TCGTAGGATAAAGTGGGAGCAC 59.570 50.000 0.00 0.00 0.00 4.40
421 422 2.429610 GTCGTAGGATAAAGTGGGAGCA 59.570 50.000 0.00 0.00 0.00 4.26
422 423 2.694109 AGTCGTAGGATAAAGTGGGAGC 59.306 50.000 0.00 0.00 0.00 4.70
423 424 3.700038 ACAGTCGTAGGATAAAGTGGGAG 59.300 47.826 0.00 0.00 0.00 4.30
424 425 3.698040 GACAGTCGTAGGATAAAGTGGGA 59.302 47.826 0.00 0.00 0.00 4.37
425 426 3.700038 AGACAGTCGTAGGATAAAGTGGG 59.300 47.826 0.00 0.00 0.00 4.61
426 427 4.985538 AGACAGTCGTAGGATAAAGTGG 57.014 45.455 0.00 0.00 0.00 4.00
427 428 7.653767 AAAAAGACAGTCGTAGGATAAAGTG 57.346 36.000 0.00 0.00 0.00 3.16
455 456 9.853177 GAGGGATGATTAGATTAGAAAGGAAAA 57.147 33.333 0.00 0.00 0.00 2.29
456 457 9.230477 AGAGGGATGATTAGATTAGAAAGGAAA 57.770 33.333 0.00 0.00 0.00 3.13
457 458 8.654997 CAGAGGGATGATTAGATTAGAAAGGAA 58.345 37.037 0.00 0.00 0.00 3.36
458 459 8.013072 TCAGAGGGATGATTAGATTAGAAAGGA 58.987 37.037 0.00 0.00 0.00 3.36
459 460 8.200024 TCAGAGGGATGATTAGATTAGAAAGG 57.800 38.462 0.00 0.00 0.00 3.11
468 469 9.439461 TCTCTTAAAATCAGAGGGATGATTAGA 57.561 33.333 2.61 2.41 46.64 2.10
473 474 8.654997 CCTATTCTCTTAAAATCAGAGGGATGA 58.345 37.037 0.00 0.00 38.71 2.92
474 475 8.654997 TCCTATTCTCTTAAAATCAGAGGGATG 58.345 37.037 0.00 0.00 38.71 3.51
475 476 8.655901 GTCCTATTCTCTTAAAATCAGAGGGAT 58.344 37.037 0.00 0.00 38.71 3.85
476 477 7.071321 GGTCCTATTCTCTTAAAATCAGAGGGA 59.929 40.741 0.00 0.00 38.71 4.20
477 478 7.220740 GGTCCTATTCTCTTAAAATCAGAGGG 58.779 42.308 0.00 0.00 38.71 4.30
478 479 6.926272 CGGTCCTATTCTCTTAAAATCAGAGG 59.074 42.308 0.00 0.00 38.71 3.69
479 480 6.926272 CCGGTCCTATTCTCTTAAAATCAGAG 59.074 42.308 0.00 0.00 39.45 3.35
480 481 6.610020 TCCGGTCCTATTCTCTTAAAATCAGA 59.390 38.462 0.00 0.00 0.00 3.27
481 482 6.817184 TCCGGTCCTATTCTCTTAAAATCAG 58.183 40.000 0.00 0.00 0.00 2.90
482 483 6.801718 TCCGGTCCTATTCTCTTAAAATCA 57.198 37.500 0.00 0.00 0.00 2.57
483 484 8.678593 AAATCCGGTCCTATTCTCTTAAAATC 57.321 34.615 0.00 0.00 0.00 2.17
489 490 8.903820 CAAAATAAAATCCGGTCCTATTCTCTT 58.096 33.333 0.00 0.00 0.00 2.85
490 491 8.053355 ACAAAATAAAATCCGGTCCTATTCTCT 58.947 33.333 0.00 0.00 0.00 3.10
491 492 8.221965 ACAAAATAAAATCCGGTCCTATTCTC 57.778 34.615 0.00 0.00 0.00 2.87
492 493 8.589701 AACAAAATAAAATCCGGTCCTATTCT 57.410 30.769 0.00 0.00 0.00 2.40
493 494 9.297586 GAAACAAAATAAAATCCGGTCCTATTC 57.702 33.333 0.00 0.00 0.00 1.75
494 495 8.808092 TGAAACAAAATAAAATCCGGTCCTATT 58.192 29.630 0.00 0.00 0.00 1.73
495 496 8.356000 TGAAACAAAATAAAATCCGGTCCTAT 57.644 30.769 0.00 0.00 0.00 2.57
496 497 7.762588 TGAAACAAAATAAAATCCGGTCCTA 57.237 32.000 0.00 0.00 0.00 2.94
497 498 6.658188 TGAAACAAAATAAAATCCGGTCCT 57.342 33.333 0.00 0.00 0.00 3.85
498 499 7.600752 TGATTGAAACAAAATAAAATCCGGTCC 59.399 33.333 0.00 0.00 0.00 4.46
499 500 8.527567 TGATTGAAACAAAATAAAATCCGGTC 57.472 30.769 0.00 0.00 0.00 4.79
500 501 8.894768 TTGATTGAAACAAAATAAAATCCGGT 57.105 26.923 0.00 0.00 0.00 5.28
510 511 9.672086 CATTGCTTGATTTGATTGAAACAAAAT 57.328 25.926 4.74 0.00 39.95 1.82
511 512 8.675504 ACATTGCTTGATTTGATTGAAACAAAA 58.324 25.926 4.74 0.00 39.95 2.44
512 513 8.211116 ACATTGCTTGATTTGATTGAAACAAA 57.789 26.923 3.11 3.11 40.62 2.83
513 514 7.789273 ACATTGCTTGATTTGATTGAAACAA 57.211 28.000 0.00 0.00 0.00 2.83
514 515 8.927721 CATACATTGCTTGATTTGATTGAAACA 58.072 29.630 0.00 0.00 0.00 2.83
515 516 8.928733 ACATACATTGCTTGATTTGATTGAAAC 58.071 29.630 0.00 0.00 0.00 2.78
516 517 8.927721 CACATACATTGCTTGATTTGATTGAAA 58.072 29.630 0.00 0.00 0.00 2.69
517 518 7.546316 CCACATACATTGCTTGATTTGATTGAA 59.454 33.333 0.00 0.00 0.00 2.69
518 519 7.036829 CCACATACATTGCTTGATTTGATTGA 58.963 34.615 0.00 0.00 0.00 2.57
519 520 7.036829 TCCACATACATTGCTTGATTTGATTG 58.963 34.615 0.00 0.00 0.00 2.67
520 521 7.172868 TCCACATACATTGCTTGATTTGATT 57.827 32.000 0.00 0.00 0.00 2.57
521 522 6.778834 TCCACATACATTGCTTGATTTGAT 57.221 33.333 0.00 0.00 0.00 2.57
522 523 6.209192 ACTTCCACATACATTGCTTGATTTGA 59.791 34.615 0.00 0.00 0.00 2.69
523 524 6.392354 ACTTCCACATACATTGCTTGATTTG 58.608 36.000 0.00 0.00 0.00 2.32
524 525 6.594788 ACTTCCACATACATTGCTTGATTT 57.405 33.333 0.00 0.00 0.00 2.17
525 526 6.183360 CGTACTTCCACATACATTGCTTGATT 60.183 38.462 0.00 0.00 0.00 2.57
526 527 5.294306 CGTACTTCCACATACATTGCTTGAT 59.706 40.000 0.00 0.00 0.00 2.57
527 528 4.629634 CGTACTTCCACATACATTGCTTGA 59.370 41.667 0.00 0.00 0.00 3.02
528 529 4.201812 CCGTACTTCCACATACATTGCTTG 60.202 45.833 0.00 0.00 0.00 4.01
529 530 3.938963 CCGTACTTCCACATACATTGCTT 59.061 43.478 0.00 0.00 0.00 3.91
530 531 3.196901 TCCGTACTTCCACATACATTGCT 59.803 43.478 0.00 0.00 0.00 3.91
531 532 3.527533 TCCGTACTTCCACATACATTGC 58.472 45.455 0.00 0.00 0.00 3.56
532 533 4.511454 CCATCCGTACTTCCACATACATTG 59.489 45.833 0.00 0.00 0.00 2.82
533 534 4.407621 TCCATCCGTACTTCCACATACATT 59.592 41.667 0.00 0.00 0.00 2.71
534 535 3.964688 TCCATCCGTACTTCCACATACAT 59.035 43.478 0.00 0.00 0.00 2.29
535 536 3.131577 GTCCATCCGTACTTCCACATACA 59.868 47.826 0.00 0.00 0.00 2.29
536 537 3.714391 GTCCATCCGTACTTCCACATAC 58.286 50.000 0.00 0.00 0.00 2.39
537 538 2.359848 CGTCCATCCGTACTTCCACATA 59.640 50.000 0.00 0.00 0.00 2.29
538 539 1.136305 CGTCCATCCGTACTTCCACAT 59.864 52.381 0.00 0.00 0.00 3.21
539 540 0.528924 CGTCCATCCGTACTTCCACA 59.471 55.000 0.00 0.00 0.00 4.17
540 541 0.804933 GCGTCCATCCGTACTTCCAC 60.805 60.000 0.00 0.00 0.00 4.02
541 542 1.252215 TGCGTCCATCCGTACTTCCA 61.252 55.000 0.00 0.00 0.00 3.53
542 543 0.804933 GTGCGTCCATCCGTACTTCC 60.805 60.000 0.00 0.00 39.82 3.46
543 544 1.138047 CGTGCGTCCATCCGTACTTC 61.138 60.000 0.00 0.00 40.62 3.01
544 545 1.153901 CGTGCGTCCATCCGTACTT 60.154 57.895 0.00 0.00 40.62 2.24
545 546 2.488355 CGTGCGTCCATCCGTACT 59.512 61.111 0.00 0.00 40.62 2.73
546 547 3.252484 GCGTGCGTCCATCCGTAC 61.252 66.667 0.00 0.00 39.60 3.67
547 548 4.840288 CGCGTGCGTCCATCCGTA 62.840 66.667 6.00 0.00 34.35 4.02
559 560 4.459331 CCATGTTTCCCGCGCGTG 62.459 66.667 29.95 19.21 0.00 5.34
563 564 3.140141 ATGGCCATGTTTCCCGCG 61.140 61.111 20.04 0.00 0.00 6.46
564 565 2.495866 CATGGCCATGTTTCCCGC 59.504 61.111 33.68 0.00 34.23 6.13
572 573 3.248363 CGTACTTCACATACATGGCCATG 59.752 47.826 38.53 38.53 44.15 3.66
573 574 3.466836 CGTACTTCACATACATGGCCAT 58.533 45.455 14.09 14.09 0.00 4.40
574 575 2.419436 CCGTACTTCACATACATGGCCA 60.419 50.000 8.56 8.56 0.00 5.36
575 576 2.159014 TCCGTACTTCACATACATGGCC 60.159 50.000 0.00 0.00 0.00 5.36
576 577 3.173668 TCCGTACTTCACATACATGGC 57.826 47.619 0.00 0.00 0.00 4.40
577 578 4.058124 CCATCCGTACTTCACATACATGG 58.942 47.826 0.00 0.00 0.00 3.66
578 579 4.745125 GTCCATCCGTACTTCACATACATG 59.255 45.833 0.00 0.00 0.00 3.21
579 580 4.499188 CGTCCATCCGTACTTCACATACAT 60.499 45.833 0.00 0.00 0.00 2.29
580 581 3.181494 CGTCCATCCGTACTTCACATACA 60.181 47.826 0.00 0.00 0.00 2.29
581 582 3.369385 CGTCCATCCGTACTTCACATAC 58.631 50.000 0.00 0.00 0.00 2.39
582 583 2.359848 CCGTCCATCCGTACTTCACATA 59.640 50.000 0.00 0.00 0.00 2.29
583 584 1.136305 CCGTCCATCCGTACTTCACAT 59.864 52.381 0.00 0.00 0.00 3.21
584 585 0.528924 CCGTCCATCCGTACTTCACA 59.471 55.000 0.00 0.00 0.00 3.58
585 586 0.179119 CCCGTCCATCCGTACTTCAC 60.179 60.000 0.00 0.00 0.00 3.18
586 587 1.324740 CCCCGTCCATCCGTACTTCA 61.325 60.000 0.00 0.00 0.00 3.02
587 588 1.039233 TCCCCGTCCATCCGTACTTC 61.039 60.000 0.00 0.00 0.00 3.01
588 589 1.000739 TCCCCGTCCATCCGTACTT 59.999 57.895 0.00 0.00 0.00 2.24
589 590 1.455217 CTCCCCGTCCATCCGTACT 60.455 63.158 0.00 0.00 0.00 2.73
590 591 3.126528 CTCCCCGTCCATCCGTAC 58.873 66.667 0.00 0.00 0.00 3.67
591 592 2.836360 GCTCCCCGTCCATCCGTA 60.836 66.667 0.00 0.00 0.00 4.02
593 594 3.550431 ATGCTCCCCGTCCATCCG 61.550 66.667 0.00 0.00 0.00 4.18
594 595 2.111878 CATGCTCCCCGTCCATCC 59.888 66.667 0.00 0.00 0.00 3.51
595 596 1.227674 GACATGCTCCCCGTCCATC 60.228 63.158 0.00 0.00 0.00 3.51
596 597 2.746375 GGACATGCTCCCCGTCCAT 61.746 63.158 2.98 0.00 46.98 3.41
597 598 3.399181 GGACATGCTCCCCGTCCA 61.399 66.667 2.98 0.00 46.98 4.02
599 600 0.815615 GAATGGACATGCTCCCCGTC 60.816 60.000 10.60 0.00 38.49 4.79
600 601 1.224592 GAATGGACATGCTCCCCGT 59.775 57.895 10.60 0.00 38.49 5.28
601 602 1.889105 CGAATGGACATGCTCCCCG 60.889 63.158 10.60 8.32 38.49 5.73
602 603 2.189499 GCGAATGGACATGCTCCCC 61.189 63.158 10.60 0.64 38.49 4.81
603 604 2.189499 GGCGAATGGACATGCTCCC 61.189 63.158 10.60 2.85 38.49 4.30
604 605 1.451927 TGGCGAATGGACATGCTCC 60.452 57.895 7.22 7.22 39.97 4.70
605 606 1.026182 TGTGGCGAATGGACATGCTC 61.026 55.000 0.00 0.00 34.91 4.26
606 607 1.002257 TGTGGCGAATGGACATGCT 60.002 52.632 0.00 0.00 34.91 3.79
607 608 1.137404 GTGTGGCGAATGGACATGC 59.863 57.895 0.00 0.00 34.91 4.06
608 609 1.656818 GGGTGTGGCGAATGGACATG 61.657 60.000 0.00 0.00 34.91 3.21
609 610 1.378514 GGGTGTGGCGAATGGACAT 60.379 57.895 0.00 0.00 34.91 3.06
610 611 2.033448 GGGTGTGGCGAATGGACA 59.967 61.111 0.00 0.00 0.00 4.02
611 612 2.033448 TGGGTGTGGCGAATGGAC 59.967 61.111 0.00 0.00 0.00 4.02
612 613 2.033448 GTGGGTGTGGCGAATGGA 59.967 61.111 0.00 0.00 0.00 3.41
613 614 3.430862 CGTGGGTGTGGCGAATGG 61.431 66.667 0.00 0.00 0.00 3.16
614 615 2.358125 TCGTGGGTGTGGCGAATG 60.358 61.111 0.00 0.00 0.00 2.67
615 616 2.047274 CTCGTGGGTGTGGCGAAT 60.047 61.111 0.00 0.00 34.13 3.34
618 619 3.515316 AAGTCTCGTGGGTGTGGCG 62.515 63.158 0.00 0.00 0.00 5.69
628 629 2.932234 CGAGGTGCCCAAGTCTCGT 61.932 63.158 0.00 0.00 42.61 4.18
629 630 2.125912 CGAGGTGCCCAAGTCTCG 60.126 66.667 0.00 0.00 42.09 4.04
631 632 0.182775 AAAACGAGGTGCCCAAGTCT 59.817 50.000 0.00 0.00 0.00 3.24
635 637 1.440938 CGTGAAAACGAGGTGCCCAA 61.441 55.000 0.00 0.00 34.64 4.12
646 648 0.382636 CCGCGTGACTTCGTGAAAAC 60.383 55.000 4.92 0.00 42.80 2.43
856 859 0.524862 TGGTCGCTCGGTAAGTTCTC 59.475 55.000 0.00 0.00 0.00 2.87
883 886 6.048732 TGTCAGAGCAAGTGTATTTATGGA 57.951 37.500 0.00 0.00 0.00 3.41
884 887 6.741992 TTGTCAGAGCAAGTGTATTTATGG 57.258 37.500 0.00 0.00 0.00 2.74
898 917 1.265365 GGTCAGTGCTTTTGTCAGAGC 59.735 52.381 3.93 3.93 39.33 4.09
923 942 2.915659 ACTCTTGCGACGGTGGGA 60.916 61.111 0.00 0.00 0.00 4.37
925 944 1.284982 CTTGACTCTTGCGACGGTGG 61.285 60.000 0.00 0.00 0.00 4.61
963 982 0.040425 CGCCTTGTTGGTTTCGAAGG 60.040 55.000 0.00 0.00 38.43 3.46
992 1011 2.105128 CGTCGGCCATGAGGAGAC 59.895 66.667 2.24 0.00 39.32 3.36
1150 1169 2.796304 AGACAACAACAACAACGCATG 58.204 42.857 0.00 0.00 0.00 4.06
1154 1173 4.339429 CCTACAAGACAACAACAACAACG 58.661 43.478 0.00 0.00 0.00 4.10
1155 1174 4.439563 CCCCTACAAGACAACAACAACAAC 60.440 45.833 0.00 0.00 0.00 3.32
1156 1175 3.697045 CCCCTACAAGACAACAACAACAA 59.303 43.478 0.00 0.00 0.00 2.83
1168 1187 2.642254 CGTCACCGCCCCTACAAGA 61.642 63.158 0.00 0.00 0.00 3.02
1285 1313 2.809601 ATGAACGTCAGCGCCGAC 60.810 61.111 13.86 13.86 42.83 4.79
1463 1523 1.182667 TCCACCGACACTACAGGATG 58.817 55.000 0.00 0.00 46.00 3.51
1500 1560 1.880027 ACTGCCATTCAAAAGACGACC 59.120 47.619 0.00 0.00 0.00 4.79
1508 1568 1.275856 GCCCAATCACTGCCATTCAAA 59.724 47.619 0.00 0.00 0.00 2.69
1872 1932 4.776322 CGATCTTGCCCCACGCCA 62.776 66.667 0.00 0.00 36.24 5.69
1930 1991 0.249868 AAAGCCGCCCAAGAAAAAGC 60.250 50.000 0.00 0.00 0.00 3.51
1944 2005 5.863935 CAGCAGGTTTATAGTTTGAAAAGCC 59.136 40.000 0.00 0.00 32.44 4.35
2018 2079 7.287005 CCTTTCACACATACTACTCCTACCATA 59.713 40.741 0.00 0.00 0.00 2.74
2019 2080 6.098409 CCTTTCACACATACTACTCCTACCAT 59.902 42.308 0.00 0.00 0.00 3.55
2020 2081 5.421056 CCTTTCACACATACTACTCCTACCA 59.579 44.000 0.00 0.00 0.00 3.25
2021 2082 5.681695 GCCTTTCACACATACTACTCCTACC 60.682 48.000 0.00 0.00 0.00 3.18
2022 2083 5.105473 TGCCTTTCACACATACTACTCCTAC 60.105 44.000 0.00 0.00 0.00 3.18
2023 2084 5.020795 TGCCTTTCACACATACTACTCCTA 58.979 41.667 0.00 0.00 0.00 2.94
2024 2085 3.838317 TGCCTTTCACACATACTACTCCT 59.162 43.478 0.00 0.00 0.00 3.69
2025 2086 4.184629 CTGCCTTTCACACATACTACTCC 58.815 47.826 0.00 0.00 0.00 3.85
2026 2087 4.184629 CCTGCCTTTCACACATACTACTC 58.815 47.826 0.00 0.00 0.00 2.59
2027 2088 3.619979 GCCTGCCTTTCACACATACTACT 60.620 47.826 0.00 0.00 0.00 2.57
2028 2089 2.678336 GCCTGCCTTTCACACATACTAC 59.322 50.000 0.00 0.00 0.00 2.73
2029 2090 2.676750 CGCCTGCCTTTCACACATACTA 60.677 50.000 0.00 0.00 0.00 1.82
2030 2091 1.826385 GCCTGCCTTTCACACATACT 58.174 50.000 0.00 0.00 0.00 2.12
2031 2092 0.447801 CGCCTGCCTTTCACACATAC 59.552 55.000 0.00 0.00 0.00 2.39
2032 2093 0.323302 TCGCCTGCCTTTCACACATA 59.677 50.000 0.00 0.00 0.00 2.29
2040 2101 3.769300 AGGAAAAATAATCGCCTGCCTTT 59.231 39.130 0.00 0.00 0.00 3.11
2041 2102 3.365472 AGGAAAAATAATCGCCTGCCTT 58.635 40.909 0.00 0.00 0.00 4.35
2057 2118 2.215196 CAACCCGACGAGAAAAGGAAA 58.785 47.619 0.00 0.00 0.00 3.13
2058 2119 1.541670 CCAACCCGACGAGAAAAGGAA 60.542 52.381 0.00 0.00 0.00 3.36
2059 2120 0.034337 CCAACCCGACGAGAAAAGGA 59.966 55.000 0.00 0.00 0.00 3.36
2060 2121 0.953960 CCCAACCCGACGAGAAAAGG 60.954 60.000 0.00 0.00 0.00 3.11
2061 2122 0.250166 ACCCAACCCGACGAGAAAAG 60.250 55.000 0.00 0.00 0.00 2.27
2062 2123 0.180878 AACCCAACCCGACGAGAAAA 59.819 50.000 0.00 0.00 0.00 2.29
2073 2134 2.203582 GACCCCCACAACCCAACC 60.204 66.667 0.00 0.00 0.00 3.77
2290 2352 1.866853 CGGCAAAGGGAGCAAAGACC 61.867 60.000 0.00 0.00 0.00 3.85
2295 2357 2.283101 ATGCGGCAAAGGGAGCAA 60.283 55.556 6.82 0.00 43.19 3.91
2358 2420 0.103755 GTCCCGGTTCTTATCCCGTC 59.896 60.000 0.00 0.00 42.67 4.79
2364 2426 1.141053 GCTGGATGTCCCGGTTCTTAT 59.859 52.381 0.00 0.00 43.53 1.73
2415 2477 1.097232 TTGGAGATGCCTTGAATGCG 58.903 50.000 0.00 0.00 37.63 4.73
2420 2482 1.299648 CCCGTTGGAGATGCCTTGA 59.700 57.895 0.00 0.00 37.63 3.02
2423 2485 0.252197 GTAACCCGTTGGAGATGCCT 59.748 55.000 0.00 0.00 37.63 4.75
2512 2574 1.560860 GAAGCATGCGATACGAGCCC 61.561 60.000 13.01 0.00 0.00 5.19
2586 2648 4.914420 CGCCGCGAGCCTGACTAG 62.914 72.222 8.23 0.00 38.78 2.57
2599 2661 1.030488 TTCCTCTCCTCTGTACGCCG 61.030 60.000 0.00 0.00 0.00 6.46
2633 2695 4.096003 CCACCCCGTCCTCGCATT 62.096 66.667 0.00 0.00 35.54 3.56
2661 2723 1.275657 CTTTTTCGACGCACACGCT 59.724 52.632 0.00 0.00 45.53 5.07
2664 2726 1.721133 CCGCTTTTTCGACGCACAC 60.721 57.895 0.00 0.00 0.00 3.82
2665 2727 2.629210 CCGCTTTTTCGACGCACA 59.371 55.556 0.00 0.00 0.00 4.57
2671 2733 2.314647 CCTCGTGCCGCTTTTTCGA 61.315 57.895 0.00 0.00 0.00 3.71
2673 2735 0.521735 ATTCCTCGTGCCGCTTTTTC 59.478 50.000 0.00 0.00 0.00 2.29
2685 2747 0.107654 GGAGGTGACCCAATTCCTCG 60.108 60.000 0.00 0.00 45.04 4.63
2706 2768 0.651031 GGCTAAGTGTTCGATTCGGC 59.349 55.000 6.18 0.00 0.00 5.54
2715 2777 2.660802 CGTCGGGGGCTAAGTGTT 59.339 61.111 0.00 0.00 0.00 3.32
2737 2799 1.210204 AAGGAATCAGCAGGAGGGCA 61.210 55.000 0.00 0.00 35.83 5.36
2760 2822 3.717294 GCGTGTGGGGGAGATGGT 61.717 66.667 0.00 0.00 0.00 3.55
2773 2835 2.328099 GCCTGGGACAAAGAGCGTG 61.328 63.158 0.00 0.00 38.70 5.34
2774 2836 2.032681 GCCTGGGACAAAGAGCGT 59.967 61.111 0.00 0.00 38.70 5.07
2782 2844 0.394216 CCATGAAATCGCCTGGGACA 60.394 55.000 0.00 0.00 0.00 4.02
2786 2848 0.461870 TCGTCCATGAAATCGCCTGG 60.462 55.000 0.00 0.00 0.00 4.45
2788 2850 0.462047 GGTCGTCCATGAAATCGCCT 60.462 55.000 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.