Multiple sequence alignment - TraesCS6A01G257200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G257200 chr6A 100.000 9656 0 0 1 9656 479537254 479546909 0.000000e+00 17832.0
1 TraesCS6A01G257200 chr6A 96.154 130 5 0 3306 3435 199715235 199715364 7.600000e-51 213.0
2 TraesCS6A01G257200 chr6A 88.636 88 9 1 6204 6291 604890665 604890751 1.330000e-18 106.0
3 TraesCS6A01G257200 chr6A 98.000 50 0 1 5683 5731 479542124 479542173 1.730000e-12 86.1
4 TraesCS6A01G257200 chr6A 98.000 50 0 1 4871 4920 479542936 479542984 1.730000e-12 86.1
5 TraesCS6A01G257200 chr6D 93.917 3485 137 29 6165 9634 338806157 338809581 0.000000e+00 5192.0
6 TraesCS6A01G257200 chr6D 96.883 2727 51 16 588 3307 338795120 338797819 0.000000e+00 4534.0
7 TraesCS6A01G257200 chr6D 94.696 2206 78 15 3431 5605 338797818 338800015 0.000000e+00 3389.0
8 TraesCS6A01G257200 chr6D 96.120 567 18 2 5607 6169 338800052 338800618 0.000000e+00 922.0
9 TraesCS6A01G257200 chr6D 92.677 437 18 4 1 425 338794322 338794756 1.380000e-172 617.0
10 TraesCS6A01G257200 chr6D 88.372 129 9 4 415 543 338794912 338795034 6.040000e-32 150.0
11 TraesCS6A01G257200 chr6D 98.000 50 0 1 5683 5731 338799261 338799310 1.730000e-12 86.1
12 TraesCS6A01G257200 chr6D 96.000 50 1 1 4871 4920 338800131 338800179 8.040000e-11 80.5
13 TraesCS6A01G257200 chr6B 94.238 3124 142 23 6252 9358 481466515 481463413 0.000000e+00 4737.0
14 TraesCS6A01G257200 chr6B 97.246 2651 58 5 669 3304 481472343 481469693 0.000000e+00 4477.0
15 TraesCS6A01G257200 chr6B 93.851 1480 57 17 3433 4895 481469689 481468227 0.000000e+00 2198.0
16 TraesCS6A01G257200 chr6B 92.525 709 25 6 4925 5605 481468235 481467527 0.000000e+00 990.0
17 TraesCS6A01G257200 chr6B 95.212 543 24 2 5684 6225 481467051 481466510 0.000000e+00 857.0
18 TraesCS6A01G257200 chr6B 94.667 75 1 1 5605 5676 481467492 481467418 7.930000e-21 113.0
19 TraesCS6A01G257200 chr6B 100.000 46 0 0 4875 4920 481467049 481467004 1.730000e-12 86.1
20 TraesCS6A01G257200 chr7D 96.875 128 4 0 3306 3433 154193123 154192996 2.110000e-51 215.0
21 TraesCS6A01G257200 chr7D 94.815 135 7 0 3298 3432 251035916 251036050 2.730000e-50 211.0
22 TraesCS6A01G257200 chr7D 90.110 91 8 1 6204 6294 121937432 121937343 6.130000e-22 117.0
23 TraesCS6A01G257200 chr7D 89.130 92 9 1 6199 6290 151326534 151326444 7.930000e-21 113.0
24 TraesCS6A01G257200 chr7D 88.889 90 9 1 6201 6290 121937344 121937432 1.030000e-19 110.0
25 TraesCS6A01G257200 chr3A 96.875 128 4 0 3306 3433 485220658 485220785 2.110000e-51 215.0
26 TraesCS6A01G257200 chr3A 96.154 130 5 0 3306 3435 348834572 348834443 7.600000e-51 213.0
27 TraesCS6A01G257200 chr3A 94.815 135 7 0 3306 3440 59516007 59515873 2.730000e-50 211.0
28 TraesCS6A01G257200 chr2D 92.667 150 9 2 3294 3441 340252882 340252733 2.110000e-51 215.0
29 TraesCS6A01G257200 chr1B 91.391 151 12 1 3285 3434 5000719 5000869 1.270000e-48 206.0
30 TraesCS6A01G257200 chr1B 90.909 88 7 1 6204 6291 618697664 618697578 6.130000e-22 117.0
31 TraesCS6A01G257200 chr5B 89.571 163 12 5 3289 3449 482995328 482995487 1.640000e-47 202.0
32 TraesCS6A01G257200 chr3B 91.398 93 7 1 6199 6291 482487795 482487886 1.020000e-24 126.0
33 TraesCS6A01G257200 chr2B 91.304 92 7 1 6203 6294 65314873 65314963 3.660000e-24 124.0
34 TraesCS6A01G257200 chr3D 89.773 88 8 1 6204 6291 131489253 131489167 2.850000e-20 111.0
35 TraesCS6A01G257200 chr3D 84.000 100 13 3 433 530 62916590 62916492 1.030000e-14 93.5
36 TraesCS6A01G257200 chr4D 87.368 95 11 1 6203 6297 107696610 107696517 3.690000e-19 108.0
37 TraesCS6A01G257200 chr7A 82.292 96 13 1 436 527 167525376 167525471 8.040000e-11 80.5
38 TraesCS6A01G257200 chr7A 97.368 38 1 0 485 522 14171580 14171543 2.250000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G257200 chr6A 479537254 479546909 9655 False 17832.000000 17832 100.000000 1 9656 1 chr6A.!!$F2 9655
1 TraesCS6A01G257200 chr6D 338806157 338809581 3424 False 5192.000000 5192 93.917000 6165 9634 1 chr6D.!!$F1 3469
2 TraesCS6A01G257200 chr6D 338794322 338800618 6296 False 1396.942857 4534 94.678286 1 6169 7 chr6D.!!$F2 6168
3 TraesCS6A01G257200 chr6B 481463413 481472343 8930 True 1922.585714 4737 95.391286 669 9358 7 chr6B.!!$R1 8689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 1.214367 TCAAAAAGGTCTCGTGCGAC 58.786 50.000 0.00 0.00 0.00 5.19 F
155 156 2.089201 TCTTCGGCGACATGACTTCTA 58.911 47.619 10.16 0.00 0.00 2.10 F
509 688 2.483877 CACTGGTGCTCGCATTTTCTTA 59.516 45.455 0.00 0.00 0.00 2.10 F
1996 2233 1.196127 GCCGCAACACAGGTAAACTAC 59.804 52.381 0.00 0.00 0.00 2.73 F
3320 3562 0.337082 TTCCTACTCCATCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37 F
3321 3563 0.337082 TCCTACTCCATCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12 F
3430 3672 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85 F
3585 3829 1.587547 TACAGTTGTCATGTTGCGCA 58.412 45.000 5.66 5.66 32.02 6.09 F
5261 5550 1.405872 ATGTGGATGCGGCATTTGAT 58.594 45.000 17.78 4.60 0.00 2.57 F
5282 5571 0.462047 CCGATACACCACAAGGAGCC 60.462 60.000 0.00 0.00 38.69 4.70 F
5286 5583 0.470766 TACACCACAAGGAGCCGTTT 59.529 50.000 0.00 0.00 38.69 3.60 F
7109 7815 0.320697 ACCTAGCAACCTTGGTCGAC 59.679 55.000 7.13 7.13 42.41 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1774 0.321671 TACAGCTTGTCTGACCCAGC 59.678 55.000 17.15 17.15 45.72 4.85 R
1873 2108 0.395586 TCCAAACCTGCAGCAACAGT 60.396 50.000 8.66 0.00 35.83 3.55 R
2290 2527 1.746787 TGCATGCATCAAAGCCTACTG 59.253 47.619 18.46 0.00 0.00 2.74 R
3410 3652 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17 R
4427 4680 0.036010 ATGGACAGAAAGGACAGGCG 60.036 55.000 0.00 0.00 0.00 5.52 R
4644 4910 0.102120 CACCTCATCGGCTCACTCTC 59.898 60.000 0.00 0.00 35.61 3.20 R
5261 5550 0.249120 CTCCTTGTGGTGTATCGGCA 59.751 55.000 0.00 0.00 34.23 5.69 R
5264 5553 0.806102 CGGCTCCTTGTGGTGTATCG 60.806 60.000 0.00 0.00 34.23 2.92 R
6408 7103 0.030908 GGAGGCTCGAAGGTGTATCG 59.969 60.000 8.69 0.00 41.53 2.92 R
7020 7726 0.107703 GCCTTCATCATCCCGTGTCA 60.108 55.000 0.00 0.00 0.00 3.58 R
7235 7949 0.948623 CGTCAACCCTCAACGATGCA 60.949 55.000 0.00 0.00 38.65 3.96 R
9086 9803 0.534877 TTGGCATGCGTGAGTGAACT 60.535 50.000 12.44 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.221067 TGGTTCAAAAGCTTTACGTTGTTAATG 59.779 33.333 13.10 2.99 0.00 1.90
102 103 6.018751 GGCAATCAAGTTTTCAAAAAGGTCTC 60.019 38.462 0.00 0.00 0.00 3.36
109 110 1.214367 TCAAAAAGGTCTCGTGCGAC 58.786 50.000 0.00 0.00 0.00 5.19
137 138 4.712337 ACTTCCCTGACATCGATAAGTTCT 59.288 41.667 0.00 0.00 0.00 3.01
139 140 5.263968 TCCCTGACATCGATAAGTTCTTC 57.736 43.478 0.00 0.00 0.00 2.87
148 149 2.216488 CGATAAGTTCTTCGGCGACATG 59.784 50.000 10.16 2.90 0.00 3.21
155 156 2.089201 TCTTCGGCGACATGACTTCTA 58.911 47.619 10.16 0.00 0.00 2.10
196 197 9.507329 GCATCTTATCTGTTTTATTAGGGATCA 57.493 33.333 0.00 0.00 0.00 2.92
202 203 7.265599 TCTGTTTTATTAGGGATCACTCCAA 57.734 36.000 0.00 0.00 44.08 3.53
210 211 2.982488 AGGGATCACTCCAACAACTTCT 59.018 45.455 0.00 0.00 44.08 2.85
298 299 8.618677 TGAGTAGTATTTACATTCGTTCGATCT 58.381 33.333 0.00 0.00 0.00 2.75
432 611 3.039202 GAACCAACGCATCGCTGGG 62.039 63.158 12.43 1.35 45.90 4.45
453 632 3.518303 GGTGGTTAGAAGGACAGTGGTAT 59.482 47.826 0.00 0.00 0.00 2.73
455 634 5.176592 GTGGTTAGAAGGACAGTGGTATTC 58.823 45.833 0.00 0.00 0.00 1.75
456 635 5.046520 GTGGTTAGAAGGACAGTGGTATTCT 60.047 44.000 9.87 9.87 37.13 2.40
457 636 5.187186 TGGTTAGAAGGACAGTGGTATTCTC 59.813 44.000 8.67 0.00 35.72 2.87
458 637 5.187186 GGTTAGAAGGACAGTGGTATTCTCA 59.813 44.000 8.67 0.00 35.72 3.27
459 638 6.127026 GGTTAGAAGGACAGTGGTATTCTCAT 60.127 42.308 8.67 0.00 35.72 2.90
460 639 5.606348 AGAAGGACAGTGGTATTCTCATC 57.394 43.478 0.00 0.00 31.08 2.92
476 655 5.537300 TCTCATCCCACTAGAGTTTATGC 57.463 43.478 0.00 0.00 0.00 3.14
478 657 3.391296 TCATCCCACTAGAGTTTATGCCC 59.609 47.826 0.00 0.00 0.00 5.36
483 662 4.841246 CCCACTAGAGTTTATGCCCTAGAT 59.159 45.833 0.00 0.00 34.34 1.98
509 688 2.483877 CACTGGTGCTCGCATTTTCTTA 59.516 45.455 0.00 0.00 0.00 2.10
558 785 6.651975 AGAGCTAGGGTATGTGTGTATTAC 57.348 41.667 0.00 0.00 0.00 1.89
560 787 6.265649 AGAGCTAGGGTATGTGTGTATTACTG 59.734 42.308 0.00 0.00 0.00 2.74
568 795 9.525409 GGGTATGTGTGTATTACTGTACTAAAG 57.475 37.037 0.00 0.00 0.00 1.85
591 818 8.418597 AAGAAAATACTAGAAACCTTTTCCCC 57.581 34.615 0.00 0.00 36.80 4.81
592 819 7.766628 AGAAAATACTAGAAACCTTTTCCCCT 58.233 34.615 0.00 0.00 36.80 4.79
593 820 8.232412 AGAAAATACTAGAAACCTTTTCCCCTT 58.768 33.333 0.00 0.00 36.80 3.95
594 821 8.792830 AAAATACTAGAAACCTTTTCCCCTTT 57.207 30.769 0.00 0.00 0.00 3.11
595 822 8.792830 AAATACTAGAAACCTTTTCCCCTTTT 57.207 30.769 0.00 0.00 0.00 2.27
596 823 9.886337 AAATACTAGAAACCTTTTCCCCTTTTA 57.114 29.630 0.00 0.00 0.00 1.52
606 833 8.606039 ACCTTTTCCCCTTTTATATATAGGGT 57.394 34.615 20.90 5.99 46.01 4.34
659 886 5.927030 ACTTGCATAACGAAACAGTGTATG 58.073 37.500 0.00 0.00 0.00 2.39
660 887 5.468746 ACTTGCATAACGAAACAGTGTATGT 59.531 36.000 0.00 0.00 46.97 2.29
661 888 6.647481 ACTTGCATAACGAAACAGTGTATGTA 59.353 34.615 0.00 0.00 43.00 2.29
662 889 7.333423 ACTTGCATAACGAAACAGTGTATGTAT 59.667 33.333 0.00 0.00 43.00 2.29
663 890 7.603963 TGCATAACGAAACAGTGTATGTATT 57.396 32.000 0.00 0.00 43.00 1.89
664 891 8.035165 TGCATAACGAAACAGTGTATGTATTT 57.965 30.769 0.00 0.00 43.00 1.40
665 892 8.508062 TGCATAACGAAACAGTGTATGTATTTT 58.492 29.630 0.00 0.00 43.00 1.82
666 893 8.995906 GCATAACGAAACAGTGTATGTATTTTC 58.004 33.333 0.00 0.00 43.00 2.29
667 894 9.485591 CATAACGAAACAGTGTATGTATTTTCC 57.514 33.333 0.00 0.00 43.00 3.13
938 1165 2.543641 CCGTCAAACCCCGAATACTAC 58.456 52.381 0.00 0.00 0.00 2.73
1544 1774 2.513204 CAGGGATCGCACTGCCTG 60.513 66.667 12.83 8.39 46.48 4.85
1570 1800 2.675348 GTCAGACAAGCTGTATTCTGGC 59.325 50.000 11.96 8.11 45.14 4.85
1848 2083 7.123397 TGTGATTTTAACCCAATGCTATTGCTA 59.877 33.333 0.00 0.00 40.48 3.49
1869 2104 4.890158 ATTCCACATGTGTGTCTGACTA 57.110 40.909 23.79 1.04 44.21 2.59
1871 2106 4.192429 TCCACATGTGTGTCTGACTATG 57.808 45.455 23.79 10.35 44.21 2.23
1872 2107 3.831911 TCCACATGTGTGTCTGACTATGA 59.168 43.478 23.79 6.97 44.21 2.15
1873 2108 4.283212 TCCACATGTGTGTCTGACTATGAA 59.717 41.667 23.79 0.00 44.21 2.57
1996 2233 1.196127 GCCGCAACACAGGTAAACTAC 59.804 52.381 0.00 0.00 0.00 2.73
2019 2256 3.025322 TCCTTTTGGCTTGTCTTTGGA 57.975 42.857 0.00 0.00 40.12 3.53
2020 2257 3.370104 TCCTTTTGGCTTGTCTTTGGAA 58.630 40.909 0.00 0.00 40.12 3.53
2024 2261 5.507985 CCTTTTGGCTTGTCTTTGGAACTAG 60.508 44.000 0.00 0.00 0.00 2.57
2032 2269 5.689383 TGTCTTTGGAACTAGCATTTGTC 57.311 39.130 0.00 0.00 0.00 3.18
2033 2270 4.518970 TGTCTTTGGAACTAGCATTTGTCC 59.481 41.667 0.00 0.00 0.00 4.02
2049 2286 8.048514 AGCATTTGTCCTGGCAAATATAATTTT 58.951 29.630 20.76 3.78 44.42 1.82
2051 2288 9.381033 CATTTGTCCTGGCAAATATAATTTTCA 57.619 29.630 20.76 0.00 44.42 2.69
2192 2429 5.640357 TGCTGTTGTTTCGTTAATAGTAGGG 59.360 40.000 0.00 0.00 0.00 3.53
2195 2432 5.248020 TGTTGTTTCGTTAATAGTAGGGGGA 59.752 40.000 0.00 0.00 0.00 4.81
2290 2527 9.098355 TCACACATTCTTAGATACAGTTAATGC 57.902 33.333 0.00 0.00 0.00 3.56
2416 2653 4.139786 GTGGATCATGGAAGTATGCACAT 58.860 43.478 10.01 0.00 40.46 3.21
2505 2742 6.861065 AGGCATATTGGTAATTAGTTCGTG 57.139 37.500 0.00 0.00 0.00 4.35
2511 2748 9.093970 CATATTGGTAATTAGTTCGTGACTTCA 57.906 33.333 0.00 0.00 39.86 3.02
3283 3525 3.275617 TGTCCCCTTGTTATCGAATGG 57.724 47.619 0.00 0.00 0.00 3.16
3307 3549 9.444600 TGGTTCTACAAATTCTTACATTCCTAC 57.555 33.333 0.00 0.00 0.00 3.18
3308 3550 9.668497 GGTTCTACAAATTCTTACATTCCTACT 57.332 33.333 0.00 0.00 0.00 2.57
3310 3552 9.886132 TTCTACAAATTCTTACATTCCTACTCC 57.114 33.333 0.00 0.00 0.00 3.85
3311 3553 9.042450 TCTACAAATTCTTACATTCCTACTCCA 57.958 33.333 0.00 0.00 0.00 3.86
3312 3554 9.838339 CTACAAATTCTTACATTCCTACTCCAT 57.162 33.333 0.00 0.00 0.00 3.41
3313 3555 8.738645 ACAAATTCTTACATTCCTACTCCATC 57.261 34.615 0.00 0.00 0.00 3.51
3314 3556 7.775561 ACAAATTCTTACATTCCTACTCCATCC 59.224 37.037 0.00 0.00 0.00 3.51
3315 3557 5.531122 TTCTTACATTCCTACTCCATCCG 57.469 43.478 0.00 0.00 0.00 4.18
3316 3558 4.543689 TCTTACATTCCTACTCCATCCGT 58.456 43.478 0.00 0.00 0.00 4.69
3317 3559 4.583489 TCTTACATTCCTACTCCATCCGTC 59.417 45.833 0.00 0.00 0.00 4.79
3318 3560 2.040178 ACATTCCTACTCCATCCGTCC 58.960 52.381 0.00 0.00 0.00 4.79
3319 3561 1.344763 CATTCCTACTCCATCCGTCCC 59.655 57.143 0.00 0.00 0.00 4.46
3320 3562 0.337082 TTCCTACTCCATCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
3321 3563 0.337082 TCCTACTCCATCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
3322 3564 1.200519 CCTACTCCATCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
3323 3565 1.557832 CCTACTCCATCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
3324 3566 2.172717 CCTACTCCATCCGTCCCAAAAT 59.827 50.000 0.00 0.00 0.00 1.82
3325 3567 2.899303 ACTCCATCCGTCCCAAAATT 57.101 45.000 0.00 0.00 0.00 1.82
3326 3568 2.723273 ACTCCATCCGTCCCAAAATTC 58.277 47.619 0.00 0.00 0.00 2.17
3327 3569 2.308866 ACTCCATCCGTCCCAAAATTCT 59.691 45.455 0.00 0.00 0.00 2.40
3328 3570 3.245264 ACTCCATCCGTCCCAAAATTCTT 60.245 43.478 0.00 0.00 0.00 2.52
3329 3571 3.088532 TCCATCCGTCCCAAAATTCTTG 58.911 45.455 0.00 0.00 0.00 3.02
3330 3572 2.825532 CCATCCGTCCCAAAATTCTTGT 59.174 45.455 0.00 0.00 0.00 3.16
3331 3573 3.119495 CCATCCGTCCCAAAATTCTTGTC 60.119 47.826 0.00 0.00 0.00 3.18
3332 3574 3.502123 TCCGTCCCAAAATTCTTGTCT 57.498 42.857 0.00 0.00 0.00 3.41
3333 3575 3.827722 TCCGTCCCAAAATTCTTGTCTT 58.172 40.909 0.00 0.00 0.00 3.01
3334 3576 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3335 3577 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3336 3578 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3337 3579 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3338 3580 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3339 3581 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3340 3582 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3341 3583 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3342 3584 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3343 3585 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
3344 3586 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
3345 3587 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
3350 3592 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
3351 3593 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
3352 3594 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
3353 3595 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
3354 3596 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
3355 3597 7.280205 GTCTTAGATTTGTCCAAATACGGATGT 59.720 37.037 5.29 0.00 40.77 3.06
3356 3598 8.479689 TCTTAGATTTGTCCAAATACGGATGTA 58.520 33.333 5.29 0.00 40.77 2.29
3357 3599 9.273016 CTTAGATTTGTCCAAATACGGATGTAT 57.727 33.333 5.29 0.00 43.14 2.29
3358 3600 7.730364 AGATTTGTCCAAATACGGATGTATC 57.270 36.000 5.29 0.00 40.42 2.24
3359 3601 7.279615 AGATTTGTCCAAATACGGATGTATCA 58.720 34.615 5.29 0.00 40.42 2.15
3360 3602 7.773224 AGATTTGTCCAAATACGGATGTATCAA 59.227 33.333 5.29 0.00 40.42 2.57
3361 3603 7.689446 TTTGTCCAAATACGGATGTATCAAA 57.311 32.000 0.00 0.00 40.42 2.69
3362 3604 7.873719 TTGTCCAAATACGGATGTATCAAAT 57.126 32.000 0.00 0.00 40.42 2.32
3363 3605 7.490962 TGTCCAAATACGGATGTATCAAATC 57.509 36.000 0.00 0.00 40.42 2.17
3364 3606 7.051000 TGTCCAAATACGGATGTATCAAATCA 58.949 34.615 0.00 0.00 40.42 2.57
3365 3607 7.011950 TGTCCAAATACGGATGTATCAAATCAC 59.988 37.037 0.00 0.00 40.42 3.06
3366 3608 6.201997 TCCAAATACGGATGTATCAAATCACG 59.798 38.462 0.00 0.00 40.42 4.35
3367 3609 6.018262 CCAAATACGGATGTATCAAATCACGT 60.018 38.462 0.00 0.00 40.42 4.49
3368 3610 7.406553 CAAATACGGATGTATCAAATCACGTT 58.593 34.615 0.00 0.00 40.42 3.99
3369 3611 7.548196 AATACGGATGTATCAAATCACGTTT 57.452 32.000 0.00 0.00 40.42 3.60
3370 3612 5.873179 ACGGATGTATCAAATCACGTTTT 57.127 34.783 0.00 0.00 31.40 2.43
3371 3613 6.971527 ACGGATGTATCAAATCACGTTTTA 57.028 33.333 0.00 0.00 31.40 1.52
3372 3614 7.000575 ACGGATGTATCAAATCACGTTTTAG 57.999 36.000 0.00 0.00 31.40 1.85
3373 3615 6.592607 ACGGATGTATCAAATCACGTTTTAGT 59.407 34.615 0.00 0.00 31.40 2.24
3374 3616 7.760794 ACGGATGTATCAAATCACGTTTTAGTA 59.239 33.333 0.00 0.00 31.40 1.82
3375 3617 8.761497 CGGATGTATCAAATCACGTTTTAGTAT 58.239 33.333 0.00 0.00 0.00 2.12
3419 3661 9.454859 AGACTAATCTAAGACAAGAATTTTGGG 57.545 33.333 5.68 0.00 31.46 4.12
3420 3662 9.449719 GACTAATCTAAGACAAGAATTTTGGGA 57.550 33.333 5.68 0.00 0.00 4.37
3421 3663 9.232473 ACTAATCTAAGACAAGAATTTTGGGAC 57.768 33.333 5.68 0.00 0.00 4.46
3422 3664 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3423 3665 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3424 3666 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3425 3667 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3426 3668 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3427 3669 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3428 3670 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3429 3671 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3430 3672 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3431 3673 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3585 3829 1.587547 TACAGTTGTCATGTTGCGCA 58.412 45.000 5.66 5.66 32.02 6.09
3605 3849 4.954998 CGCAATTGCAGTTTGTTTTGTTAC 59.045 37.500 28.77 0.00 42.21 2.50
3639 3884 7.609532 CCTGTTAACTTCTGATTCATCCTTTCT 59.390 37.037 7.22 0.00 0.00 2.52
4025 4278 6.372103 TCGAAGCAAGGGTTAATTCGATAAAA 59.628 34.615 4.39 0.00 44.68 1.52
4082 4335 9.073475 GGCTCGATAATCCTCATATATTAGTCT 57.927 37.037 0.00 0.00 0.00 3.24
4174 4427 3.064931 GGTTCTCCTGACTAACAAACCG 58.935 50.000 0.00 0.00 29.73 4.44
4217 4470 7.148918 CCAACTCAGCTTATTTGAAAAATGACG 60.149 37.037 0.00 0.00 0.00 4.35
4249 4502 9.599866 AAAATTAATGCCAACTTCTAATAAGCC 57.400 29.630 0.00 0.00 0.00 4.35
4353 4606 6.439487 TCTTTCCTCTCACATCCTATCTTCT 58.561 40.000 0.00 0.00 0.00 2.85
4402 4655 1.955080 CTCGCCGTCCTTCCTACTATT 59.045 52.381 0.00 0.00 0.00 1.73
4427 4680 4.227197 TCCTGTATCTTCTCCATCTTCCC 58.773 47.826 0.00 0.00 0.00 3.97
4472 4725 3.244033 ACTGTAGAAGCTGACATGCTC 57.756 47.619 0.00 0.00 43.24 4.26
4749 5018 7.825331 TGACATATCCAAGTGGTTTTTGTTA 57.175 32.000 0.00 0.00 36.34 2.41
4801 5070 5.768317 AGTGTCATTTGTTGAATTAACCCG 58.232 37.500 0.00 0.00 38.55 5.28
4840 5109 4.394920 GGCTCGTGATCTGGTTTCAATAAA 59.605 41.667 0.00 0.00 0.00 1.40
4952 5221 4.021925 GGGCAGCTCTCGGGTTGT 62.022 66.667 0.00 0.00 0.00 3.32
5151 5433 4.152647 CCACTCAGATAGCTATGGTGGTA 58.847 47.826 22.99 5.73 38.22 3.25
5183 5472 4.082523 GCAGCGGCCTACTCACCA 62.083 66.667 0.00 0.00 0.00 4.17
5261 5550 1.405872 ATGTGGATGCGGCATTTGAT 58.594 45.000 17.78 4.60 0.00 2.57
5282 5571 0.462047 CCGATACACCACAAGGAGCC 60.462 60.000 0.00 0.00 38.69 4.70
5286 5583 0.470766 TACACCACAAGGAGCCGTTT 59.529 50.000 0.00 0.00 38.69 3.60
5299 5596 1.657181 CCGTTTGCGCTGTTGTTCC 60.657 57.895 9.73 0.00 36.67 3.62
5385 5682 0.896940 AGCCAAGGTCACAGCAATGG 60.897 55.000 0.00 0.00 0.00 3.16
5394 5691 0.968901 CACAGCAATGGAGCATGGGT 60.969 55.000 0.00 0.00 36.85 4.51
5423 5720 6.992715 ACCTAGCACAATCCTTATGATGTAAC 59.007 38.462 0.00 0.00 32.68 2.50
5430 5727 6.486657 ACAATCCTTATGATGTAACCGATTGG 59.513 38.462 0.00 0.00 39.60 3.16
5578 5875 3.094572 AGCATTGCCTTAGACAAGCAAT 58.905 40.909 4.70 3.73 38.19 3.56
5754 6448 6.047231 ACGTAAACAAGAAGCTTCAGTTAGT 58.953 36.000 27.07 23.57 30.84 2.24
5859 6553 8.429641 TGTTTGAGAACACTAGATACCTTTCTT 58.570 33.333 0.00 0.00 40.71 2.52
5936 6631 1.990563 GCAGATTGCATGCAGTTCAAC 59.009 47.619 25.57 16.85 44.26 3.18
6043 6738 6.889301 TGAGGATTCCAAAGCATGATATTC 57.111 37.500 5.29 0.00 0.00 1.75
6118 6813 0.611714 TCCGTTTCAGTAGGCTTCCC 59.388 55.000 0.00 0.00 0.00 3.97
6163 6858 3.992427 GCTGCCAGAAAAATTCTTTCCAG 59.008 43.478 0.00 9.46 38.11 3.86
6229 6924 6.044404 ACTCCCTCCGATCCATATTAATTGTT 59.956 38.462 0.00 0.00 0.00 2.83
6237 6932 7.255242 CCGATCCATATTAATTGTTGCAGACTT 60.255 37.037 0.00 0.00 0.00 3.01
6238 6933 8.773645 CGATCCATATTAATTGTTGCAGACTTA 58.226 33.333 0.00 0.00 0.00 2.24
6240 6935 9.632638 ATCCATATTAATTGTTGCAGACTTAGT 57.367 29.630 0.00 0.00 0.00 2.24
6246 6941 8.671384 TTAATTGTTGCAGACTTAGTACAACT 57.329 30.769 19.14 5.83 40.88 3.16
6247 6942 7.568199 AATTGTTGCAGACTTAGTACAACTT 57.432 32.000 19.14 9.07 40.88 2.66
6248 6943 6.995511 TTGTTGCAGACTTAGTACAACTTT 57.004 33.333 19.14 0.00 40.88 2.66
6249 6944 6.995511 TGTTGCAGACTTAGTACAACTTTT 57.004 33.333 19.14 0.00 40.88 2.27
6250 6945 6.781138 TGTTGCAGACTTAGTACAACTTTTG 58.219 36.000 19.14 0.00 40.88 2.44
6327 7022 7.936496 TTTGTAGTTATCATTGCCATTCAGA 57.064 32.000 0.00 0.00 0.00 3.27
6351 7046 2.723273 ACATTTCCCTCCGAAACATCC 58.277 47.619 0.00 0.00 43.21 3.51
6408 7103 5.437060 TGCCCTTGTTTGATAGGAGTAATC 58.563 41.667 0.00 0.00 33.13 1.75
6414 7109 8.141909 CCTTGTTTGATAGGAGTAATCGATACA 58.858 37.037 0.00 0.00 36.94 2.29
6455 7150 9.520204 AGCAATACTTATGCAATGATTTTGTAC 57.480 29.630 0.00 0.00 46.22 2.90
6509 7204 1.874872 CCAATTGTTTGGCTTGCTTGG 59.125 47.619 4.43 0.00 45.71 3.61
6584 7279 6.863275 TCGCTGAGTTCATCAAATAAGTCTA 58.137 36.000 0.00 0.00 37.52 2.59
6589 7284 9.140286 CTGAGTTCATCAAATAAGTCTACGAAA 57.860 33.333 0.00 0.00 37.52 3.46
6634 7329 9.981114 ACAAAATTTGGTAGAAGGTAATTGAAG 57.019 29.630 10.71 0.00 34.12 3.02
6772 7477 2.033424 GGTGACAAGCTGAGGTTTGTTC 59.967 50.000 0.00 0.00 44.65 3.18
6775 7480 4.212214 GTGACAAGCTGAGGTTTGTTCTAG 59.788 45.833 0.00 0.00 44.65 2.43
6807 7512 6.777213 ACTGAAGTTAGTATGTACTCCCTG 57.223 41.667 0.00 0.00 37.73 4.45
6861 7567 3.120898 GGAGGGGGTAGGAAATTGTAGT 58.879 50.000 0.00 0.00 0.00 2.73
6868 7574 4.007659 GGTAGGAAATTGTAGTGTGTGGG 58.992 47.826 0.00 0.00 0.00 4.61
6961 7667 0.570218 ATGCTCACCTAGGATCCCCT 59.430 55.000 17.98 0.00 46.62 4.79
7020 7726 4.140924 AGGGAAAAGGAAGGTTGTCTCATT 60.141 41.667 0.00 0.00 0.00 2.57
7022 7728 4.827284 GGAAAAGGAAGGTTGTCTCATTGA 59.173 41.667 0.00 0.00 0.00 2.57
7055 7761 0.767375 AGGCCAGAACTGAAGAAGCA 59.233 50.000 5.01 0.00 0.00 3.91
7109 7815 0.320697 ACCTAGCAACCTTGGTCGAC 59.679 55.000 7.13 7.13 42.41 4.20
7199 7907 1.204146 CGGGGAAGGAGAAGGATGAA 58.796 55.000 0.00 0.00 0.00 2.57
7205 7913 1.673767 AGGAGAAGGATGAAGCCCAA 58.326 50.000 0.00 0.00 0.00 4.12
7235 7949 2.027469 GTCGGTAGGTGATTTTGGAGGT 60.027 50.000 0.00 0.00 0.00 3.85
7256 7970 0.948623 CATCGTTGAGGGTTGACGCA 60.949 55.000 0.97 0.00 36.77 5.24
7366 8080 1.916777 GTTTCCTCCCGGACCCTCA 60.917 63.158 0.73 0.00 39.60 3.86
7401 8115 2.154427 CTTGTGGAAACGACGCGGAC 62.154 60.000 12.47 2.84 0.00 4.79
7407 8121 2.830704 GAAACGACGCGGACAGGGAT 62.831 60.000 12.47 0.00 36.53 3.85
7409 8123 3.822192 CGACGCGGACAGGGATGA 61.822 66.667 12.47 0.00 36.53 2.92
7445 8159 3.586430 GCAACCAAATGCTTCGGTT 57.414 47.368 0.00 0.00 43.82 4.44
7520 8235 2.281070 CCCGAGGAATCCCATGCG 60.281 66.667 0.00 0.00 33.88 4.73
7537 8252 0.521735 GCGACCAAACAAGCCCTAAG 59.478 55.000 0.00 0.00 0.00 2.18
7577 8292 0.108138 GCCCTCGTCTACATGCACTT 60.108 55.000 0.00 0.00 0.00 3.16
7624 8339 1.729881 CTTTGGCGGCTTGGCTATC 59.270 57.895 11.43 0.00 45.14 2.08
7661 8376 1.756538 CTGTGGCCAGAAAACAACCTT 59.243 47.619 5.11 0.00 41.50 3.50
7719 8434 1.139520 GCATCGCTTGCGGGATTTT 59.860 52.632 15.10 0.00 42.54 1.82
7736 8451 1.259609 TTTATGTGGTCGTCTCCGGT 58.740 50.000 0.00 0.00 33.95 5.28
7756 8471 2.740714 GGATGTCGTTGTCGCTGGC 61.741 63.158 0.00 0.00 36.96 4.85
7777 8492 1.538047 CCAACATTAGTGCTGGTGCT 58.462 50.000 0.00 0.00 36.93 4.40
7785 8500 4.898765 TGCTGGTGCTTGCTGCCA 62.899 61.111 0.00 8.55 42.00 4.92
7971 8686 2.282180 GGGTGTCACCGTGGCAAT 60.282 61.111 15.93 0.00 39.83 3.56
8032 8747 4.905429 TGCTTAGCACTATTTTCACTCCA 58.095 39.130 1.39 0.00 31.71 3.86
8046 8761 3.510459 TCACTCCAATCTCTCTTCCACA 58.490 45.455 0.00 0.00 0.00 4.17
8066 8781 1.985159 ACCTGCTAGTGGGTCAAATGA 59.015 47.619 8.42 0.00 0.00 2.57
8251 8966 8.431222 AGCTTCTATCTTCTCAAGAATATGCTT 58.569 33.333 0.00 0.00 41.63 3.91
8532 9247 6.126594 TGTTTTATAGGTTCAGTGATAGGGGG 60.127 42.308 0.00 0.00 0.00 5.40
8665 9380 4.566488 CCTCCCAAACCTGATGGATATAGC 60.566 50.000 0.00 0.00 40.56 2.97
8851 9566 2.705658 CAGAGGGCCCATGTAGTATCAA 59.294 50.000 27.56 0.00 0.00 2.57
8858 9574 6.045459 AGGGCCCATGTAGTATCAATATGAAA 59.955 38.462 27.56 0.00 0.00 2.69
8923 9639 3.637432 TCCTTGTAATTTGCAAAGCACG 58.363 40.909 18.19 12.75 38.71 5.34
9156 9873 9.555727 TGGGTGTTCATAACTAAATATAGAAGC 57.444 33.333 0.00 0.00 33.15 3.86
9207 9924 2.158608 ACTTCACCCTATATTGCCCTGC 60.159 50.000 0.00 0.00 0.00 4.85
9229 9946 4.878397 GCTGTATGCACATTCCTAGAAGTT 59.122 41.667 0.00 0.00 42.31 2.66
9318 10037 7.466804 ACTAGGGTCAATATTTGAGTTTCCAA 58.533 34.615 0.00 0.00 41.01 3.53
9345 10064 6.432581 AGGAAAGGGAAAATCACCTTATACC 58.567 40.000 0.00 0.00 45.98 2.73
9412 10131 2.679996 GCCCCCAGCGATTTTGGT 60.680 61.111 0.00 0.00 33.73 3.67
9416 10135 1.241315 CCCCAGCGATTTTGGTCGTT 61.241 55.000 0.00 0.00 43.27 3.85
9423 10142 2.914838 GCGATTTTGGTCGTTGGATTTC 59.085 45.455 0.00 0.00 43.27 2.17
9433 10152 1.706597 CGTTGGATTTCGCGTTTGAAC 59.293 47.619 5.77 2.40 0.00 3.18
9437 10156 1.587991 GATTTCGCGTTTGAACCGTC 58.412 50.000 5.77 0.00 0.00 4.79
9481 10200 0.383860 GAACACCCGTTTTTCGCGAG 60.384 55.000 9.59 0.00 34.75 5.03
9484 10203 2.248835 ACCCGTTTTTCGCGAGTGG 61.249 57.895 9.59 8.00 38.35 4.00
9505 10224 1.950828 CTGGCTGTCCTAATGAGCTG 58.049 55.000 0.00 0.00 33.03 4.24
9507 10226 0.179936 GGCTGTCCTAATGAGCTGCT 59.820 55.000 0.00 0.00 33.03 4.24
9513 10232 4.953667 TGTCCTAATGAGCTGCTATTCTG 58.046 43.478 0.15 0.00 0.00 3.02
9514 10233 4.202295 TGTCCTAATGAGCTGCTATTCTGG 60.202 45.833 0.15 3.12 0.00 3.86
9515 10234 3.326006 TCCTAATGAGCTGCTATTCTGGG 59.674 47.826 0.15 1.47 0.00 4.45
9516 10235 2.653234 AATGAGCTGCTATTCTGGGG 57.347 50.000 0.15 0.00 0.00 4.96
9518 10237 0.833287 TGAGCTGCTATTCTGGGGAC 59.167 55.000 0.15 0.00 0.00 4.46
9519 10238 0.833287 GAGCTGCTATTCTGGGGACA 59.167 55.000 0.15 0.00 39.59 4.02
9520 10239 1.419387 GAGCTGCTATTCTGGGGACAT 59.581 52.381 0.15 0.00 41.51 3.06
9521 10240 1.849039 AGCTGCTATTCTGGGGACATT 59.151 47.619 0.00 0.00 41.51 2.71
9522 10241 2.243221 AGCTGCTATTCTGGGGACATTT 59.757 45.455 0.00 0.00 41.51 2.32
9523 10242 3.026694 GCTGCTATTCTGGGGACATTTT 58.973 45.455 0.00 0.00 41.51 1.82
9524 10243 3.448660 GCTGCTATTCTGGGGACATTTTT 59.551 43.478 0.00 0.00 41.51 1.94
9571 10290 2.054453 GCCCATCTGGTGAAAGGCC 61.054 63.158 0.00 0.00 38.05 5.19
9597 10317 2.289569 TGGGCTTGGTTCAAATTCATGC 60.290 45.455 0.00 0.00 0.00 4.06
9639 10359 4.210832 GGCGATTTGGCAACTATTCTAC 57.789 45.455 0.00 0.00 44.08 2.59
9640 10360 3.625764 GGCGATTTGGCAACTATTCTACA 59.374 43.478 0.00 0.00 44.08 2.74
9641 10361 4.095782 GGCGATTTGGCAACTATTCTACAA 59.904 41.667 0.00 0.00 44.08 2.41
9642 10362 5.221048 GGCGATTTGGCAACTATTCTACAAT 60.221 40.000 0.00 0.00 44.08 2.71
9643 10363 6.265577 GCGATTTGGCAACTATTCTACAATT 58.734 36.000 0.00 0.00 37.61 2.32
9644 10364 6.414987 GCGATTTGGCAACTATTCTACAATTC 59.585 38.462 0.00 0.00 37.61 2.17
9645 10365 6.912591 CGATTTGGCAACTATTCTACAATTCC 59.087 38.462 0.00 0.00 37.61 3.01
9646 10366 6.524101 TTTGGCAACTATTCTACAATTCCC 57.476 37.500 0.00 0.00 37.61 3.97
9647 10367 4.532834 TGGCAACTATTCTACAATTCCCC 58.467 43.478 0.00 0.00 37.61 4.81
9648 10368 3.564225 GGCAACTATTCTACAATTCCCCG 59.436 47.826 0.00 0.00 0.00 5.73
9649 10369 3.003378 GCAACTATTCTACAATTCCCCGC 59.997 47.826 0.00 0.00 0.00 6.13
9650 10370 3.107642 ACTATTCTACAATTCCCCGCG 57.892 47.619 0.00 0.00 0.00 6.46
9651 10371 2.433239 ACTATTCTACAATTCCCCGCGT 59.567 45.455 4.92 0.00 0.00 6.01
9652 10372 2.413310 ATTCTACAATTCCCCGCGTT 57.587 45.000 4.92 0.00 0.00 4.84
9653 10373 1.729284 TTCTACAATTCCCCGCGTTC 58.271 50.000 4.92 0.00 0.00 3.95
9654 10374 0.108041 TCTACAATTCCCCGCGTTCC 60.108 55.000 4.92 0.00 0.00 3.62
9655 10375 0.391927 CTACAATTCCCCGCGTTCCA 60.392 55.000 4.92 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.854381 GTGGGAAAGACATTAACAACGTAAAG 59.146 38.462 0.00 0.00 0.00 1.85
47 48 1.674651 GAAGCGGGGTGGGAAAGAC 60.675 63.158 0.00 0.00 0.00 3.01
102 103 1.513586 GGGAAGTAGTCGTCGCACG 60.514 63.158 2.79 2.79 44.19 5.34
109 110 2.014857 TCGATGTCAGGGAAGTAGTCG 58.985 52.381 0.00 0.00 0.00 4.18
137 138 3.186909 CATTAGAAGTCATGTCGCCGAA 58.813 45.455 0.00 0.00 0.00 4.30
139 140 1.258982 GCATTAGAAGTCATGTCGCCG 59.741 52.381 0.00 0.00 0.00 6.46
148 149 5.528690 TGCATCCACAATAGCATTAGAAGTC 59.471 40.000 0.00 0.00 31.05 3.01
155 156 6.946583 AGATAAGATGCATCCACAATAGCATT 59.053 34.615 23.06 9.12 46.71 3.56
202 203 7.516198 AATCAATTGCTAGAACAGAAGTTGT 57.484 32.000 0.00 0.00 43.45 3.32
284 285 4.929211 TGATGAACAAGATCGAACGAATGT 59.071 37.500 0.12 4.71 0.00 2.71
285 286 5.454736 TGATGAACAAGATCGAACGAATG 57.545 39.130 0.12 4.12 0.00 2.67
327 340 8.194769 AGCAATTTACCAATAAGTTTAATCCGG 58.805 33.333 0.00 0.00 0.00 5.14
391 404 6.561614 TCGCAAGGTTTCTAGTATCTAACTG 58.438 40.000 0.00 0.00 37.11 3.16
426 605 0.391263 GTCCTTCTAACCACCCAGCG 60.391 60.000 0.00 0.00 0.00 5.18
427 606 0.690762 TGTCCTTCTAACCACCCAGC 59.309 55.000 0.00 0.00 0.00 4.85
432 611 4.820894 ATACCACTGTCCTTCTAACCAC 57.179 45.455 0.00 0.00 0.00 4.16
453 632 5.163301 GGCATAAACTCTAGTGGGATGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
455 634 4.503991 GGGCATAAACTCTAGTGGGATGAG 60.504 50.000 0.00 0.00 0.00 2.90
456 635 3.391296 GGGCATAAACTCTAGTGGGATGA 59.609 47.826 0.00 0.00 0.00 2.92
457 636 3.392616 AGGGCATAAACTCTAGTGGGATG 59.607 47.826 0.00 0.00 0.00 3.51
458 637 3.669949 AGGGCATAAACTCTAGTGGGAT 58.330 45.455 0.00 0.00 0.00 3.85
459 638 3.130734 AGGGCATAAACTCTAGTGGGA 57.869 47.619 0.00 0.00 0.00 4.37
460 639 4.223953 TCTAGGGCATAAACTCTAGTGGG 58.776 47.826 0.00 0.00 33.09 4.61
465 644 7.125811 AGTGTCAAATCTAGGGCATAAACTCTA 59.874 37.037 0.00 0.00 0.00 2.43
476 655 2.026822 AGCACCAGTGTCAAATCTAGGG 60.027 50.000 0.00 0.00 0.00 3.53
478 657 2.926200 CGAGCACCAGTGTCAAATCTAG 59.074 50.000 0.00 0.00 0.00 2.43
483 662 0.534877 ATGCGAGCACCAGTGTCAAA 60.535 50.000 0.00 0.00 0.00 2.69
539 718 8.461249 AGTACAGTAATACACACATACCCTAG 57.539 38.462 0.00 0.00 0.00 3.02
568 795 8.418597 AAGGGGAAAAGGTTTCTAGTATTTTC 57.581 34.615 1.11 0.00 38.52 2.29
623 850 5.788531 CGTTATGCAAGTACGAAGGAAAAAG 59.211 40.000 11.70 0.00 37.47 2.27
649 876 8.671028 GGAAATACGGAAAATACATACACTGTT 58.329 33.333 0.00 0.00 39.39 3.16
652 879 8.974060 ATGGAAATACGGAAAATACATACACT 57.026 30.769 0.00 0.00 0.00 3.55
659 886 5.560183 CGCCTGATGGAAATACGGAAAATAC 60.560 44.000 0.00 0.00 34.57 1.89
660 887 4.513692 CGCCTGATGGAAATACGGAAAATA 59.486 41.667 0.00 0.00 34.57 1.40
661 888 3.315191 CGCCTGATGGAAATACGGAAAAT 59.685 43.478 0.00 0.00 34.57 1.82
662 889 2.680841 CGCCTGATGGAAATACGGAAAA 59.319 45.455 0.00 0.00 34.57 2.29
663 890 2.285083 CGCCTGATGGAAATACGGAAA 58.715 47.619 0.00 0.00 34.57 3.13
664 891 1.474320 CCGCCTGATGGAAATACGGAA 60.474 52.381 0.00 0.00 36.51 4.30
665 892 0.105964 CCGCCTGATGGAAATACGGA 59.894 55.000 0.00 0.00 36.51 4.69
666 893 0.179056 ACCGCCTGATGGAAATACGG 60.179 55.000 0.00 0.00 39.06 4.02
667 894 1.597663 GAACCGCCTGATGGAAATACG 59.402 52.381 0.00 0.00 34.57 3.06
938 1165 1.490574 CAGGGGAGGAAGTAGTCAGG 58.509 60.000 0.00 0.00 0.00 3.86
1493 1723 1.466360 GGACGCACAGCATTTGATGAC 60.466 52.381 2.36 0.00 35.09 3.06
1495 1725 0.806868 AGGACGCACAGCATTTGATG 59.193 50.000 0.00 0.00 37.48 3.07
1544 1774 0.321671 TACAGCTTGTCTGACCCAGC 59.678 55.000 17.15 17.15 45.72 4.85
1570 1800 2.002586 CGCACTGTTCCATCCTTACTG 58.997 52.381 0.00 0.00 0.00 2.74
1655 1885 7.642669 ACTGAAAATTGTCATACAGAACACAG 58.357 34.615 0.00 0.00 0.00 3.66
1869 2104 1.696063 AACCTGCAGCAACAGTTCAT 58.304 45.000 8.66 0.00 35.83 2.57
1871 2106 1.536709 CCAAACCTGCAGCAACAGTTC 60.537 52.381 8.66 0.00 35.83 3.01
1872 2107 0.461135 CCAAACCTGCAGCAACAGTT 59.539 50.000 8.66 3.63 35.83 3.16
1873 2108 0.395586 TCCAAACCTGCAGCAACAGT 60.396 50.000 8.66 0.00 35.83 3.55
1996 2233 3.493176 CCAAAGACAAGCCAAAAGGAAGG 60.493 47.826 0.00 0.00 0.00 3.46
1997 2234 3.384467 TCCAAAGACAAGCCAAAAGGAAG 59.616 43.478 0.00 0.00 0.00 3.46
2019 2256 2.584835 TGCCAGGACAAATGCTAGTT 57.415 45.000 0.00 0.00 0.00 2.24
2020 2257 2.584835 TTGCCAGGACAAATGCTAGT 57.415 45.000 0.00 0.00 0.00 2.57
2024 2261 7.790823 AAATTATATTTGCCAGGACAAATGC 57.209 32.000 22.37 0.00 46.84 3.56
2049 2286 8.837788 AATACGAGAGAATGCATCATTAATGA 57.162 30.769 20.07 20.07 41.70 2.57
2051 2288 9.710900 TGTAATACGAGAGAATGCATCATTAAT 57.289 29.630 0.00 0.00 33.90 1.40
2192 2429 3.198853 AGCCAGAGTAAAGTCTCATTCCC 59.801 47.826 0.00 0.00 36.97 3.97
2195 2432 5.489792 TTGAGCCAGAGTAAAGTCTCATT 57.510 39.130 0.00 0.00 36.97 2.57
2290 2527 1.746787 TGCATGCATCAAAGCCTACTG 59.253 47.619 18.46 0.00 0.00 2.74
2416 2653 3.694072 GCAATACATGGGTCTACTTTGCA 59.306 43.478 0.00 0.00 38.40 4.08
2505 2742 2.490115 ACTCGTGACTCCAGATGAAGTC 59.510 50.000 0.00 0.00 0.00 3.01
2511 2748 2.498644 TCTGACTCGTGACTCCAGAT 57.501 50.000 0.00 0.00 0.00 2.90
2673 2910 8.762426 CGGCCACTCTAAATTCTAAAGTTATAC 58.238 37.037 2.24 0.00 0.00 1.47
2977 3219 2.602217 GGTGACTGAAAATCGTGCACAC 60.602 50.000 18.64 2.29 0.00 3.82
3307 3549 3.004752 AGAATTTTGGGACGGATGGAG 57.995 47.619 0.00 0.00 0.00 3.86
3308 3550 3.088532 CAAGAATTTTGGGACGGATGGA 58.911 45.455 0.00 0.00 0.00 3.41
3309 3551 2.825532 ACAAGAATTTTGGGACGGATGG 59.174 45.455 0.00 0.00 0.00 3.51
3310 3552 3.758554 AGACAAGAATTTTGGGACGGATG 59.241 43.478 0.00 0.00 0.00 3.51
3311 3553 4.034285 AGACAAGAATTTTGGGACGGAT 57.966 40.909 0.00 0.00 0.00 4.18
3312 3554 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3313 3555 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3314 3556 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3315 3557 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3316 3558 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3317 3559 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
3318 3560 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
3319 3561 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
3324 3566 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
3325 3567 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
3326 3568 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
3327 3569 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
3328 3570 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
3329 3571 7.280205 ACATCCGTATTTGGACAAATCTAAGAC 59.720 37.037 13.07 5.74 41.85 3.01
3330 3572 7.335627 ACATCCGTATTTGGACAAATCTAAGA 58.664 34.615 13.07 7.57 41.85 2.10
3331 3573 7.553881 ACATCCGTATTTGGACAAATCTAAG 57.446 36.000 13.07 1.07 41.85 2.18
3332 3574 9.268268 GATACATCCGTATTTGGACAAATCTAA 57.732 33.333 13.07 0.00 41.85 2.10
3333 3575 8.425703 TGATACATCCGTATTTGGACAAATCTA 58.574 33.333 13.07 0.00 41.85 1.98
3334 3576 7.279615 TGATACATCCGTATTTGGACAAATCT 58.720 34.615 13.07 0.00 41.85 2.40
3335 3577 7.490962 TGATACATCCGTATTTGGACAAATC 57.509 36.000 13.07 5.63 41.85 2.17
3336 3578 7.873719 TTGATACATCCGTATTTGGACAAAT 57.126 32.000 14.02 14.02 41.85 2.32
3337 3579 7.689446 TTTGATACATCCGTATTTGGACAAA 57.311 32.000 0.00 0.00 41.85 2.83
3338 3580 7.554476 TGATTTGATACATCCGTATTTGGACAA 59.446 33.333 0.00 0.00 41.85 3.18
3339 3581 7.011950 GTGATTTGATACATCCGTATTTGGACA 59.988 37.037 0.00 0.00 41.85 4.02
3340 3582 7.352739 GTGATTTGATACATCCGTATTTGGAC 58.647 38.462 0.00 0.00 41.85 4.02
3341 3583 6.201997 CGTGATTTGATACATCCGTATTTGGA 59.798 38.462 0.00 0.00 43.58 3.53
3342 3584 6.018262 ACGTGATTTGATACATCCGTATTTGG 60.018 38.462 0.00 0.00 38.48 3.28
3343 3585 6.943981 ACGTGATTTGATACATCCGTATTTG 58.056 36.000 0.00 0.00 38.48 2.32
3344 3586 7.548196 AACGTGATTTGATACATCCGTATTT 57.452 32.000 0.00 0.00 38.48 1.40
3345 3587 7.548196 AAACGTGATTTGATACATCCGTATT 57.452 32.000 0.00 0.00 38.48 1.89
3346 3588 7.548196 AAAACGTGATTTGATACATCCGTAT 57.452 32.000 0.00 0.00 41.16 3.06
3347 3589 6.971527 AAAACGTGATTTGATACATCCGTA 57.028 33.333 0.00 0.00 31.50 4.02
3348 3590 5.873179 AAAACGTGATTTGATACATCCGT 57.127 34.783 0.00 0.00 32.42 4.69
3349 3591 7.000575 ACTAAAACGTGATTTGATACATCCG 57.999 36.000 0.00 0.00 0.00 4.18
3393 3635 9.454859 CCCAAAATTCTTGTCTTAGATTAGTCT 57.545 33.333 0.00 0.00 38.52 3.24
3394 3636 9.449719 TCCCAAAATTCTTGTCTTAGATTAGTC 57.550 33.333 0.00 0.00 0.00 2.59
3395 3637 9.232473 GTCCCAAAATTCTTGTCTTAGATTAGT 57.768 33.333 0.00 0.00 0.00 2.24
3396 3638 8.391106 CGTCCCAAAATTCTTGTCTTAGATTAG 58.609 37.037 0.00 0.00 0.00 1.73
3397 3639 7.335924 CCGTCCCAAAATTCTTGTCTTAGATTA 59.664 37.037 0.00 0.00 0.00 1.75
3398 3640 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3399 3641 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3400 3642 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3401 3643 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3402 3644 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3403 3645 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3404 3646 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3405 3647 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3406 3648 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3407 3649 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3408 3650 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3409 3651 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3410 3652 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3411 3653 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3412 3654 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3413 3655 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3414 3656 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3415 3657 2.292389 TGTAATACTCCCTCCGTCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
3416 3658 1.288633 TGTAATACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
3417 3659 1.685517 GTGTAATACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
3418 3660 2.381911 TGTGTAATACTCCCTCCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
3419 3661 4.667519 AATGTGTAATACTCCCTCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
3420 3662 4.224370 ACAAATGTGTAATACTCCCTCCGT 59.776 41.667 0.00 0.00 35.72 4.69
3421 3663 4.766375 ACAAATGTGTAATACTCCCTCCG 58.234 43.478 0.00 0.00 35.72 4.63
3422 3664 5.104485 AGGACAAATGTGTAATACTCCCTCC 60.104 44.000 0.00 0.00 38.41 4.30
3423 3665 5.990668 AGGACAAATGTGTAATACTCCCTC 58.009 41.667 0.00 0.00 38.41 4.30
3424 3666 6.388619 AAGGACAAATGTGTAATACTCCCT 57.611 37.500 0.00 0.00 38.41 4.20
3425 3667 7.175990 TGAAAAGGACAAATGTGTAATACTCCC 59.824 37.037 0.00 0.00 38.41 4.30
3426 3668 8.106247 TGAAAAGGACAAATGTGTAATACTCC 57.894 34.615 0.00 0.00 38.41 3.85
3467 3709 9.163899 CCCAGACCTAAGAAAAATAGAACTTAC 57.836 37.037 0.00 0.00 0.00 2.34
3605 3849 4.714632 TCAGAAGTTAACAGGAAAGGTGG 58.285 43.478 8.61 0.00 0.00 4.61
3949 4201 9.386010 TGTATACCAACCAAATAGTGAATACAC 57.614 33.333 0.00 0.00 46.24 2.90
3986 4239 2.029290 TGCTTCGAGGACCTTAGTCAAC 60.029 50.000 0.00 0.00 45.48 3.18
4025 4278 2.660670 CCGACTGGAGGGAGTAGTAT 57.339 55.000 0.00 0.00 37.49 2.12
4082 4335 4.329638 TCAAGGGATTTATTGCTTGGGA 57.670 40.909 0.00 0.00 0.00 4.37
4174 4427 1.213296 TGGAATACTCCCTCAAGCCC 58.787 55.000 0.00 0.00 41.64 5.19
4217 4470 7.889589 AGAAGTTGGCATTAATTTTTGTAGC 57.110 32.000 0.00 0.00 0.00 3.58
4373 4626 2.182030 GACGGCGAGCTTGCTAGT 59.818 61.111 25.01 23.14 34.52 2.57
4402 4655 5.600484 GGAAGATGGAGAAGATACAGGAAGA 59.400 44.000 0.00 0.00 0.00 2.87
4427 4680 0.036010 ATGGACAGAAAGGACAGGCG 60.036 55.000 0.00 0.00 0.00 5.52
4472 4725 0.167470 CTGTTCATGCTTCACAGCCG 59.833 55.000 0.00 0.00 46.74 5.52
4644 4910 0.102120 CACCTCATCGGCTCACTCTC 59.898 60.000 0.00 0.00 35.61 3.20
4645 4911 0.323816 TCACCTCATCGGCTCACTCT 60.324 55.000 0.00 0.00 35.61 3.24
4740 5008 7.728847 ATTTGAGAAAGGCCATAACAAAAAC 57.271 32.000 5.01 0.00 31.45 2.43
4749 5018 6.073314 ACTATGCATATTTGAGAAAGGCCAT 58.927 36.000 6.92 0.00 0.00 4.40
4788 5057 4.841443 AACCTGTTCGGGTTAATTCAAC 57.159 40.909 13.61 0.00 46.46 3.18
4801 5070 2.633488 GAGCCTGGTATGAACCTGTTC 58.367 52.381 3.07 3.07 46.91 3.18
4952 5221 3.767902 TGGATGATCAATCACGCCATA 57.232 42.857 0.00 0.00 38.74 2.74
5151 5433 2.620115 CCGCTGCATAACCAATGATCTT 59.380 45.455 0.00 0.00 37.86 2.40
5183 5472 3.031013 ACCCTGTTTAACAGCTGCTTTT 58.969 40.909 18.72 2.12 44.63 2.27
5222 5511 7.982354 TCCACATTTGGTTTAACGAAATTTCTT 59.018 29.630 13.85 11.18 44.35 2.52
5261 5550 0.249120 CTCCTTGTGGTGTATCGGCA 59.751 55.000 0.00 0.00 34.23 5.69
5264 5553 0.806102 CGGCTCCTTGTGGTGTATCG 60.806 60.000 0.00 0.00 34.23 2.92
5282 5571 0.929824 CAGGAACAACAGCGCAAACG 60.930 55.000 11.47 0.00 44.07 3.60
5286 5583 1.236616 CCATCAGGAACAACAGCGCA 61.237 55.000 11.47 0.00 36.89 6.09
5299 5596 1.767759 AAATTTCCCCGAGCCATCAG 58.232 50.000 0.00 0.00 0.00 2.90
5338 5635 4.277672 GCACATCAGAGCACCATTTGATAT 59.722 41.667 0.00 0.00 0.00 1.63
5385 5682 1.340017 TGCTAGGTTCAACCCATGCTC 60.340 52.381 1.75 0.00 39.75 4.26
5394 5691 6.061022 TCATAAGGATTGTGCTAGGTTCAA 57.939 37.500 0.00 0.00 37.11 2.69
5423 5720 2.226330 TCCAAGTTGACAACCAATCGG 58.774 47.619 14.72 8.39 37.08 4.18
5430 5727 4.072131 TCCAAGCTATCCAAGTTGACAAC 58.928 43.478 10.47 10.47 0.00 3.32
5578 5875 6.424509 CCTAGCAAATTCATGAGCAACAAAAA 59.575 34.615 7.34 0.00 0.00 1.94
5659 5994 7.452880 TTGAAATCATCGTTCCTTCTCATTT 57.547 32.000 0.00 0.00 0.00 2.32
5754 6448 3.069300 GCCTCTATGAAGATGTCTGCTGA 59.931 47.826 0.00 0.00 0.00 4.26
5845 6539 9.680315 CTGGTACGAATAAAGAAAGGTATCTAG 57.320 37.037 0.00 0.00 0.00 2.43
5859 6553 7.881232 AGAAAAGGATCAAACTGGTACGAATAA 59.119 33.333 0.00 0.00 0.00 1.40
5936 6631 8.950210 AGAAACAATATGGTCAGTGAATACAAG 58.050 33.333 0.00 0.00 0.00 3.16
6118 6813 1.975660 TCCAAAACAGAAACCCCTCG 58.024 50.000 0.00 0.00 0.00 4.63
6240 6935 6.506147 TCGCAGACTTAGTACAAAAGTTGTA 58.494 36.000 13.08 0.00 43.27 2.41
6242 6937 5.900339 TCGCAGACTTAGTACAAAAGTTG 57.100 39.130 13.08 13.08 37.31 3.16
6327 7022 3.827722 TGTTTCGGAGGGAAATGTTCTT 58.172 40.909 0.00 0.00 45.80 2.52
6351 7046 4.399618 TCGAACAGATCTTCTAACTGGAGG 59.600 45.833 0.00 0.00 36.17 4.30
6408 7103 0.030908 GGAGGCTCGAAGGTGTATCG 59.969 60.000 8.69 0.00 41.53 2.92
6414 7109 3.453679 GCTCGGAGGCTCGAAGGT 61.454 66.667 8.69 0.00 38.77 3.50
6455 7150 2.455674 TCTGGTCGTTGAACATGAGG 57.544 50.000 0.00 0.00 0.00 3.86
6561 7256 6.291322 CGTAGACTTATTTGATGAACTCAGCG 60.291 42.308 0.00 0.00 34.68 5.18
6584 7279 4.012374 AGGATCACAAAGCATGATTTCGT 58.988 39.130 5.84 5.89 36.92 3.85
6667 7362 6.834959 TTTCGTTAAGAAAATTTGCATGCA 57.165 29.167 18.46 18.46 45.05 3.96
6733 7435 7.433708 TGTCACCACATTTCTATGTAACTTG 57.566 36.000 0.00 0.00 43.07 3.16
6807 7512 5.159399 TCTTGTGTGGTTTTAGTTAACGC 57.841 39.130 0.00 0.00 0.00 4.84
6861 7567 2.224917 CCCTTAAAGGTTAGCCCACACA 60.225 50.000 0.00 0.00 31.93 3.72
6868 7574 4.142160 CCAAATGAGCCCTTAAAGGTTAGC 60.142 45.833 0.00 0.00 31.93 3.09
7020 7726 0.107703 GCCTTCATCATCCCGTGTCA 60.108 55.000 0.00 0.00 0.00 3.58
7022 7728 1.224592 GGCCTTCATCATCCCGTGT 59.775 57.895 0.00 0.00 0.00 4.49
7055 7761 4.142138 CCTCCTACTGCTACATCTCGTTTT 60.142 45.833 0.00 0.00 0.00 2.43
7109 7815 3.812019 CGGTGTCGTCCTCCTCCG 61.812 72.222 0.00 0.00 0.00 4.63
7155 7861 5.579047 AGATTCGATCCACCTCAGATCTAT 58.421 41.667 0.00 0.00 38.39 1.98
7188 7896 1.004745 TGGTTGGGCTTCATCCTTCTC 59.995 52.381 8.42 0.00 36.44 2.87
7189 7897 1.075601 TGGTTGGGCTTCATCCTTCT 58.924 50.000 8.42 0.00 36.44 2.85
7205 7913 3.467226 CCTACCGACGGCCATGGT 61.467 66.667 15.39 14.33 39.80 3.55
7235 7949 0.948623 CGTCAACCCTCAACGATGCA 60.949 55.000 0.00 0.00 38.65 3.96
7256 7970 1.536662 ACCACCGCCTCCTTCTCTT 60.537 57.895 0.00 0.00 0.00 2.85
7289 8003 1.674221 GCACCGTCTGCAGATTTCTCT 60.674 52.381 21.47 0.00 46.29 3.10
7306 8020 0.040425 AACAAGAAATGACGGCGCAC 60.040 50.000 10.83 1.55 0.00 5.34
7383 8097 2.106534 TCCGCGTCGTTTCCACAA 59.893 55.556 4.92 0.00 0.00 3.33
7407 8121 4.661222 TGCTTACCACCATGAATTCTTCA 58.339 39.130 7.05 0.00 45.01 3.02
7409 8123 4.220602 GGTTGCTTACCACCATGAATTCTT 59.779 41.667 7.05 0.00 46.92 2.52
7445 8159 2.592287 GTCGGCCGGTGGAAAACA 60.592 61.111 27.83 0.00 0.00 2.83
7516 8231 0.037590 TAGGGCTTGTTTGGTCGCAT 59.962 50.000 0.00 0.00 0.00 4.73
7520 8235 2.820197 CCTTCTTAGGGCTTGTTTGGTC 59.180 50.000 0.00 0.00 37.94 4.02
7537 8252 3.445857 CCTTACTAGTTGCTACGCCTTC 58.554 50.000 0.00 0.00 0.00 3.46
7547 8262 2.100989 AGACGAGGGCCTTACTAGTTG 58.899 52.381 7.89 0.00 0.00 3.16
7624 8339 1.377725 AGGAACTCATTGGCTGCCG 60.378 57.895 14.98 1.17 0.00 5.69
7661 8376 4.008330 AGGAGTCGTCTATTTCTCGTCAA 58.992 43.478 0.00 0.00 0.00 3.18
7736 8451 0.172578 CCAGCGACAACGACATCCTA 59.827 55.000 0.00 0.00 42.66 2.94
7785 8500 0.250727 ATACAAACAGCAGCCGTGGT 60.251 50.000 0.00 0.00 33.53 4.16
7971 8686 0.863144 GTTGCTTTAAGTGGCGACGA 59.137 50.000 0.00 0.00 33.89 4.20
8032 8747 2.264455 AGCAGGTGTGGAAGAGAGATT 58.736 47.619 0.00 0.00 0.00 2.40
8046 8761 1.985159 TCATTTGACCCACTAGCAGGT 59.015 47.619 3.97 3.97 39.75 4.00
8150 8865 5.201243 CCTACTGAAAGGGATTAAAAGGGG 58.799 45.833 0.00 0.00 39.30 4.79
8151 8866 4.645136 GCCTACTGAAAGGGATTAAAAGGG 59.355 45.833 3.64 0.00 39.30 3.95
8232 8947 8.707449 AGAGAAGAAGCATATTCTTGAGAAGAT 58.293 33.333 7.55 0.00 38.73 2.40
8251 8966 5.946942 AAGGTAGATCATGCAAGAGAAGA 57.053 39.130 0.00 0.00 0.00 2.87
8665 9380 7.490000 ACATTGGGAAACTAATCTAGAGTACG 58.510 38.462 0.00 0.00 39.83 3.67
8697 9412 2.771943 TGTATCCTTGAGAAATCCCGCT 59.228 45.455 0.00 0.00 0.00 5.52
8851 9566 7.624549 TCCAGAACAAGACTAGCTTTTCATAT 58.375 34.615 0.00 0.00 33.60 1.78
8858 9574 4.566488 CCCATTCCAGAACAAGACTAGCTT 60.566 45.833 0.00 0.00 37.29 3.74
8923 9639 2.859165 TGAGACACTTCCATGTTCCC 57.141 50.000 0.00 0.00 31.24 3.97
9086 9803 0.534877 TTGGCATGCGTGAGTGAACT 60.535 50.000 12.44 0.00 0.00 3.01
9156 9873 6.017605 ACTGTACAGTGCTTCAAGAAGAAATG 60.018 38.462 27.41 14.81 45.07 2.32
9207 9924 8.668510 ATTAACTTCTAGGAATGTGCATACAG 57.331 34.615 0.00 0.00 40.79 2.74
9223 9940 7.913674 TTTGTTTTGCACCAAATTAACTTCT 57.086 28.000 0.00 0.00 33.19 2.85
9229 9946 5.128919 AGGCATTTGTTTTGCACCAAATTA 58.871 33.333 12.92 0.00 41.95 1.40
9318 10037 4.749048 AGGTGATTTTCCCTTTCCTTCT 57.251 40.909 0.00 0.00 0.00 2.85
9330 10049 9.901172 AATTAGAACTCGGTATAAGGTGATTTT 57.099 29.630 0.00 0.00 0.00 1.82
9381 10100 1.221840 GGGGCATGAAAGAGCTCGA 59.778 57.895 8.37 0.00 30.03 4.04
9383 10102 0.750911 CTGGGGGCATGAAAGAGCTC 60.751 60.000 5.27 5.27 0.00 4.09
9412 10131 1.218763 TCAAACGCGAAATCCAACGA 58.781 45.000 15.93 0.00 0.00 3.85
9416 10135 0.236187 CGGTTCAAACGCGAAATCCA 59.764 50.000 15.93 0.00 0.00 3.41
9417 10136 0.236449 ACGGTTCAAACGCGAAATCC 59.764 50.000 15.93 6.43 34.00 3.01
9423 10142 1.083657 CACAGACGGTTCAAACGCG 60.084 57.895 3.53 3.53 34.00 6.01
9433 10152 2.890847 GATCTGACGGCCACAGACGG 62.891 65.000 25.27 6.46 45.19 4.79
9437 10156 1.813513 AAAAGATCTGACGGCCACAG 58.186 50.000 17.59 17.59 36.80 3.66
9470 10189 1.082104 CAGCCCACTCGCGAAAAAC 60.082 57.895 11.33 0.00 0.00 2.43
9471 10190 2.258013 CCAGCCCACTCGCGAAAAA 61.258 57.895 11.33 0.00 0.00 1.94
9481 10200 0.749454 CATTAGGACAGCCAGCCCAC 60.749 60.000 0.00 0.00 36.29 4.61
9484 10203 0.817229 GCTCATTAGGACAGCCAGCC 60.817 60.000 0.00 0.00 36.29 4.85
9528 10247 3.195698 CGCTTAGGAAGGCACGCC 61.196 66.667 0.00 0.00 0.00 5.68
9529 10248 2.901051 TAGCGCTTAGGAAGGCACGC 62.901 60.000 18.68 0.00 46.20 5.34
9530 10249 0.872021 CTAGCGCTTAGGAAGGCACG 60.872 60.000 18.68 0.00 0.00 5.34
9531 10250 0.175989 ACTAGCGCTTAGGAAGGCAC 59.824 55.000 18.68 0.00 33.42 5.01
9532 10251 0.902531 AACTAGCGCTTAGGAAGGCA 59.097 50.000 18.68 0.00 33.42 4.75
9533 10252 1.666189 CAAACTAGCGCTTAGGAAGGC 59.334 52.381 18.68 0.00 33.42 4.35
9534 10253 1.666189 GCAAACTAGCGCTTAGGAAGG 59.334 52.381 18.68 0.56 33.42 3.46
9535 10254 1.666189 GGCAAACTAGCGCTTAGGAAG 59.334 52.381 18.68 9.30 33.42 3.46
9536 10255 1.677820 GGGCAAACTAGCGCTTAGGAA 60.678 52.381 18.68 0.00 43.34 3.36
9537 10256 0.107848 GGGCAAACTAGCGCTTAGGA 60.108 55.000 18.68 0.00 43.34 2.94
9538 10257 0.392461 TGGGCAAACTAGCGCTTAGG 60.392 55.000 18.68 9.34 46.41 2.69
9539 10258 1.599542 GATGGGCAAACTAGCGCTTAG 59.400 52.381 18.68 13.68 46.41 2.18
9540 10259 1.209504 AGATGGGCAAACTAGCGCTTA 59.790 47.619 18.68 0.00 46.41 3.09
9571 10290 3.899052 ATTTGAACCAAGCCCATGATG 57.101 42.857 0.00 0.00 0.00 3.07
9597 10317 1.066358 TCAAGAGCTCCTGCATGACTG 60.066 52.381 10.93 0.00 42.74 3.51
9605 10325 0.177604 AATCGCCTCAAGAGCTCCTG 59.822 55.000 10.93 8.27 0.00 3.86
9608 10328 1.012841 CCAAATCGCCTCAAGAGCTC 58.987 55.000 5.27 5.27 0.00 4.09
9634 10354 1.676615 GGAACGCGGGGAATTGTAGAA 60.677 52.381 12.47 0.00 0.00 2.10
9635 10355 0.108041 GGAACGCGGGGAATTGTAGA 60.108 55.000 12.47 0.00 0.00 2.59
9636 10356 0.391927 TGGAACGCGGGGAATTGTAG 60.392 55.000 12.47 0.00 0.00 2.74
9637 10357 1.678137 TGGAACGCGGGGAATTGTA 59.322 52.632 12.47 0.00 0.00 2.41
9638 10358 2.432563 TGGAACGCGGGGAATTGT 59.567 55.556 12.47 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.