Multiple sequence alignment - TraesCS6A01G256000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G256000 chr6A 100.000 5186 0 0 1 5186 475002922 474997737 0.000000e+00 9577.0
1 TraesCS6A01G256000 chr6A 97.368 38 0 1 4467 4503 56248957 56248994 4.340000e-06 63.9
2 TraesCS6A01G256000 chr6D 93.823 2930 116 27 2075 4974 335376257 335373363 0.000000e+00 4348.0
3 TraesCS6A01G256000 chr6D 94.783 1246 26 10 839 2070 335377527 335376307 0.000000e+00 1905.0
4 TraesCS6A01G256000 chr6D 88.140 430 33 5 6 430 335377939 335377523 3.610000e-136 496.0
5 TraesCS6A01G256000 chr6D 90.196 204 7 8 4988 5186 335373377 335373182 2.400000e-63 254.0
6 TraesCS6A01G256000 chr6B 94.842 1745 67 11 3215 4951 485293584 485295313 0.000000e+00 2702.0
7 TraesCS6A01G256000 chr6B 96.030 1184 26 6 842 2017 485291116 485292286 0.000000e+00 1906.0
8 TraesCS6A01G256000 chr6B 97.205 644 12 3 2576 3213 485292909 485293552 0.000000e+00 1085.0
9 TraesCS6A01G256000 chr6B 94.444 414 18 5 431 840 262468829 262468417 2.630000e-177 632.0
10 TraesCS6A01G256000 chr6B 94.377 409 19 4 431 836 378384222 378384629 4.410000e-175 625.0
11 TraesCS6A01G256000 chr6B 93.730 319 16 2 2187 2502 485292573 485292890 4.700000e-130 475.0
12 TraesCS6A01G256000 chr6B 94.924 197 10 0 172 368 485290517 485290713 5.040000e-80 309.0
13 TraesCS6A01G256000 chr6B 89.764 127 11 2 4986 5111 485295320 485295445 1.490000e-35 161.0
14 TraesCS6A01G256000 chr6B 98.485 66 1 0 365 430 485291047 485291112 3.280000e-22 117.0
15 TraesCS6A01G256000 chr7A 94.217 415 19 5 431 842 107600273 107600685 3.410000e-176 628.0
16 TraesCS6A01G256000 chr2A 77.577 1106 200 35 2576 3653 653679020 653680105 4.410000e-175 625.0
17 TraesCS6A01G256000 chr2A 93.735 415 19 6 429 838 647342366 647341954 2.650000e-172 616.0
18 TraesCS6A01G256000 chr2A 92.740 427 25 6 430 851 3409101 3408676 3.430000e-171 612.0
19 TraesCS6A01G256000 chr2A 81.214 692 108 15 1052 1737 653677672 653678347 5.910000e-149 538.0
20 TraesCS6A01G256000 chr3A 93.932 412 18 6 431 838 201474837 201474429 2.650000e-172 616.0
21 TraesCS6A01G256000 chr2B 77.455 1100 203 35 2576 3653 599596486 599597562 2.650000e-172 616.0
22 TraesCS6A01G256000 chr2B 89.952 418 41 1 1320 1737 599595464 599595880 5.910000e-149 538.0
23 TraesCS6A01G256000 chr5B 93.128 422 23 5 422 838 484638678 484639098 9.540000e-172 614.0
24 TraesCS6A01G256000 chr3B 93.112 421 20 6 426 843 820435982 820436396 4.440000e-170 608.0
25 TraesCS6A01G256000 chr3B 92.706 425 23 8 425 843 798589527 798589105 1.600000e-169 606.0
26 TraesCS6A01G256000 chr2D 76.854 1106 206 39 2576 3657 509942710 509943789 3.480000e-161 579.0
27 TraesCS6A01G256000 chr2D 90.977 399 35 1 1339 1737 509941707 509942104 2.130000e-148 536.0
28 TraesCS6A01G256000 chr4B 82.464 211 29 7 2575 2781 155379367 155379161 1.480000e-40 178.0
29 TraesCS6A01G256000 chr4D 81.731 208 36 2 2575 2781 168197114 168197320 6.900000e-39 172.0
30 TraesCS6A01G256000 chr1D 79.439 214 31 9 2575 2781 285442570 285442777 7.000000e-29 139.0
31 TraesCS6A01G256000 chr5A 77.778 207 40 5 2581 2784 227923959 227924162 7.050000e-24 122.0
32 TraesCS6A01G256000 chr3D 94.737 38 1 1 4465 4501 105437332 105437295 2.020000e-04 58.4
33 TraesCS6A01G256000 chr7D 100.000 29 0 0 3 31 318482983 318483011 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G256000 chr6A 474997737 475002922 5185 True 9577.00 9577 100.000000 1 5186 1 chr6A.!!$R1 5185
1 TraesCS6A01G256000 chr6D 335373182 335377939 4757 True 1750.75 4348 91.735500 6 5186 4 chr6D.!!$R1 5180
2 TraesCS6A01G256000 chr6B 485290517 485295445 4928 False 965.00 2702 94.997143 172 5111 7 chr6B.!!$F2 4939
3 TraesCS6A01G256000 chr2A 653677672 653680105 2433 False 581.50 625 79.395500 1052 3653 2 chr2A.!!$F1 2601
4 TraesCS6A01G256000 chr2B 599595464 599597562 2098 False 577.00 616 83.703500 1320 3653 2 chr2B.!!$F1 2333
5 TraesCS6A01G256000 chr2D 509941707 509943789 2082 False 557.50 579 83.915500 1339 3657 2 chr2D.!!$F1 2318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 1032 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.0 0.00 0.00 37.67 2.71 F
834 1176 0.318360 TCGGGTGCATATTAGTCGCG 60.318 55.0 0.00 0.00 36.19 5.87 F
835 1177 0.596600 CGGGTGCATATTAGTCGCGT 60.597 55.0 5.77 0.00 0.00 6.01 F
839 1181 0.747852 TGCATATTAGTCGCGTCCCA 59.252 50.0 5.77 0.00 0.00 4.37 F
1886 2369 0.756294 TTCTTGCTCAACCGAGGTCA 59.244 50.0 0.00 0.00 39.88 4.02 F
3688 4653 0.037326 CACCAGTCGTACCACTGCAT 60.037 55.0 14.49 2.85 42.29 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2543 3312 0.101219 CACGCATCAGACATCGGAGA 59.899 55.000 0.0 0.0 45.75 3.71 R
2547 3316 0.458370 TCACCACGCATCAGACATCG 60.458 55.000 0.0 0.0 0.00 3.84 R
2549 3318 0.742281 GCTCACCACGCATCAGACAT 60.742 55.000 0.0 0.0 0.00 3.06 R
2550 3319 1.374631 GCTCACCACGCATCAGACA 60.375 57.895 0.0 0.0 0.00 3.41 R
3691 4656 0.541863 GGTGATCACTGTGGTAGGGG 59.458 60.000 24.5 0.0 0.00 4.79 R
5147 6124 0.679505 ACTCTTGCCGCTACAGAACA 59.320 50.000 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.402305 GCCGTGTTTGCATGAATTTCA 58.598 42.857 0.75 0.75 33.58 2.69
27 28 3.613737 CGTGTTTGCATGAATTTCATCCC 59.386 43.478 8.95 4.61 34.28 3.85
32 33 5.651387 TTGCATGAATTTCATCCCGTTAA 57.349 34.783 8.95 0.00 34.28 2.01
35 36 6.272318 TGCATGAATTTCATCCCGTTAATTC 58.728 36.000 8.95 0.00 34.28 2.17
42 43 9.463443 GAATTTCATCCCGTTAATTCAATTAGG 57.537 33.333 0.00 0.00 37.11 2.69
44 45 7.948034 TTCATCCCGTTAATTCAATTAGGTT 57.052 32.000 0.00 0.00 0.00 3.50
58 59 8.770438 TTCAATTAGGTTTTGAAATGTATGCC 57.230 30.769 0.00 0.00 39.46 4.40
59 60 7.901029 TCAATTAGGTTTTGAAATGTATGCCA 58.099 30.769 0.00 0.00 30.44 4.92
75 76 1.621107 GCCAACAGCATTGAATGACG 58.379 50.000 9.76 0.99 42.97 4.35
82 83 2.941064 CAGCATTGAATGACGGTCTCAT 59.059 45.455 9.76 0.00 41.85 2.90
89 90 4.936891 TGAATGACGGTCTCATACATCAG 58.063 43.478 9.88 0.00 38.82 2.90
91 92 5.592688 TGAATGACGGTCTCATACATCAGTA 59.407 40.000 9.88 0.00 38.82 2.74
109 110 1.553704 GTATCGGTGAACTGGTCCCTT 59.446 52.381 0.00 0.00 0.00 3.95
110 111 0.324943 ATCGGTGAACTGGTCCCTTG 59.675 55.000 0.00 0.00 0.00 3.61
112 113 0.179029 CGGTGAACTGGTCCCTTGTT 60.179 55.000 0.00 0.00 0.00 2.83
113 114 1.749286 CGGTGAACTGGTCCCTTGTTT 60.749 52.381 0.00 0.00 0.00 2.83
114 115 1.681264 GGTGAACTGGTCCCTTGTTTG 59.319 52.381 0.00 0.00 0.00 2.93
115 116 1.067060 GTGAACTGGTCCCTTGTTTGC 59.933 52.381 0.00 0.00 0.00 3.68
117 118 1.106944 AACTGGTCCCTTGTTTGCGG 61.107 55.000 0.00 0.00 0.00 5.69
118 119 1.228124 CTGGTCCCTTGTTTGCGGA 60.228 57.895 0.00 0.00 0.00 5.54
119 120 1.515521 CTGGTCCCTTGTTTGCGGAC 61.516 60.000 0.00 0.00 44.50 4.79
120 121 1.527380 GGTCCCTTGTTTGCGGACA 60.527 57.895 7.69 0.00 46.61 4.02
121 122 1.652563 GTCCCTTGTTTGCGGACAC 59.347 57.895 0.62 0.00 44.60 3.67
122 123 1.890041 TCCCTTGTTTGCGGACACG 60.890 57.895 0.00 0.00 44.63 4.49
123 124 1.890041 CCCTTGTTTGCGGACACGA 60.890 57.895 0.00 0.00 44.60 4.35
126 131 0.657368 CTTGTTTGCGGACACGAAGC 60.657 55.000 0.00 0.00 44.60 3.86
136 141 0.237235 GACACGAAGCAAATTGGCGA 59.763 50.000 0.00 0.00 39.27 5.54
137 142 0.238289 ACACGAAGCAAATTGGCGAG 59.762 50.000 0.00 0.00 39.27 5.03
146 151 3.499157 AGCAAATTGGCGAGTTAACGTTA 59.501 39.130 3.29 3.29 39.27 3.18
148 153 4.377635 GCAAATTGGCGAGTTAACGTTAGA 60.378 41.667 8.23 0.00 35.59 2.10
149 154 5.313623 CAAATTGGCGAGTTAACGTTAGAG 58.686 41.667 8.23 3.05 35.59 2.43
170 175 6.721318 AGAGATGCCCTAATAAAACTGTTGA 58.279 36.000 0.00 0.00 0.00 3.18
246 251 3.366374 GGCCATGAGCAGTAAAGACAAAC 60.366 47.826 0.00 0.00 46.50 2.93
259 264 9.072294 CAGTAAAGACAAACAACAAAAGGTTAG 57.928 33.333 0.00 0.00 37.72 2.34
348 353 9.424319 TCTTGATAAGAACACAGAATTACAGAC 57.576 33.333 0.00 0.00 33.83 3.51
430 772 4.651994 CGCACAGTAGATCAAATCAAACC 58.348 43.478 0.00 0.00 0.00 3.27
431 773 4.651994 GCACAGTAGATCAAATCAAACCG 58.348 43.478 0.00 0.00 0.00 4.44
432 774 4.391830 GCACAGTAGATCAAATCAAACCGA 59.608 41.667 0.00 0.00 0.00 4.69
433 775 5.106712 GCACAGTAGATCAAATCAAACCGAA 60.107 40.000 0.00 0.00 0.00 4.30
434 776 6.567701 GCACAGTAGATCAAATCAAACCGAAA 60.568 38.462 0.00 0.00 0.00 3.46
435 777 7.359595 CACAGTAGATCAAATCAAACCGAAAA 58.640 34.615 0.00 0.00 0.00 2.29
436 778 7.535258 CACAGTAGATCAAATCAAACCGAAAAG 59.465 37.037 0.00 0.00 0.00 2.27
437 779 7.228706 ACAGTAGATCAAATCAAACCGAAAAGT 59.771 33.333 0.00 0.00 0.00 2.66
438 780 8.076178 CAGTAGATCAAATCAAACCGAAAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
439 781 8.290325 AGTAGATCAAATCAAACCGAAAAGTTC 58.710 33.333 0.00 0.00 0.00 3.01
440 782 7.038154 AGATCAAATCAAACCGAAAAGTTCA 57.962 32.000 0.00 0.00 0.00 3.18
441 783 7.661040 AGATCAAATCAAACCGAAAAGTTCAT 58.339 30.769 0.00 0.00 0.00 2.57
442 784 8.143835 AGATCAAATCAAACCGAAAAGTTCATT 58.856 29.630 0.00 0.00 0.00 2.57
443 785 7.692908 TCAAATCAAACCGAAAAGTTCATTC 57.307 32.000 0.00 0.00 0.00 2.67
444 786 7.488322 TCAAATCAAACCGAAAAGTTCATTCT 58.512 30.769 0.00 0.00 0.00 2.40
445 787 7.434897 TCAAATCAAACCGAAAAGTTCATTCTG 59.565 33.333 0.00 0.00 0.00 3.02
446 788 4.606961 TCAAACCGAAAAGTTCATTCTGC 58.393 39.130 0.00 0.00 0.00 4.26
447 789 4.097135 TCAAACCGAAAAGTTCATTCTGCA 59.903 37.500 0.00 0.00 0.00 4.41
448 790 3.626028 ACCGAAAAGTTCATTCTGCAC 57.374 42.857 0.00 0.00 0.00 4.57
449 791 2.293399 ACCGAAAAGTTCATTCTGCACC 59.707 45.455 0.00 0.00 0.00 5.01
450 792 2.351738 CCGAAAAGTTCATTCTGCACCC 60.352 50.000 0.00 0.00 0.00 4.61
451 793 2.665519 CGAAAAGTTCATTCTGCACCCG 60.666 50.000 0.00 0.00 0.00 5.28
452 794 2.270352 AAAGTTCATTCTGCACCCGA 57.730 45.000 0.00 0.00 0.00 5.14
453 795 1.813513 AAGTTCATTCTGCACCCGAG 58.186 50.000 0.00 0.00 0.00 4.63
454 796 0.674895 AGTTCATTCTGCACCCGAGC 60.675 55.000 0.00 0.00 0.00 5.03
455 797 0.674895 GTTCATTCTGCACCCGAGCT 60.675 55.000 0.00 0.00 34.99 4.09
456 798 0.391661 TTCATTCTGCACCCGAGCTC 60.392 55.000 2.73 2.73 34.99 4.09
457 799 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
458 800 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
459 801 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
460 802 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
461 803 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
462 804 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
477 819 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
478 820 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
479 821 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
480 822 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
481 823 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
482 824 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
483 825 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
484 826 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
485 827 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
486 828 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
487 829 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
488 830 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
489 831 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
545 887 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
546 888 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
547 889 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
548 890 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
549 891 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
550 892 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
551 893 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
552 894 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
553 895 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
554 896 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
555 897 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
556 898 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
557 899 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
558 900 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
559 901 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
560 902 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
561 903 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
562 904 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
563 905 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
564 906 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
565 907 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
566 908 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
567 909 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
568 910 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
569 911 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
570 912 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
571 913 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
572 914 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
573 915 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
574 916 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
575 917 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
576 918 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
577 919 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
578 920 6.431543 TGCCTGCAAAAATTCATCATGAAATT 59.568 30.769 3.63 0.00 40.12 1.82
579 921 7.606839 TGCCTGCAAAAATTCATCATGAAATTA 59.393 29.630 3.63 0.00 40.12 1.40
580 922 7.906527 GCCTGCAAAAATTCATCATGAAATTAC 59.093 33.333 3.63 0.00 40.12 1.89
581 923 8.937884 CCTGCAAAAATTCATCATGAAATTACA 58.062 29.630 3.63 1.89 40.12 2.41
627 969 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
628 970 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
629 971 5.117584 ACAAATTCAGTGCTTCAAAATGCA 58.882 33.333 0.00 0.00 36.79 3.96
630 972 5.761234 ACAAATTCAGTGCTTCAAAATGCAT 59.239 32.000 0.00 0.00 41.45 3.96
631 973 6.261381 ACAAATTCAGTGCTTCAAAATGCATT 59.739 30.769 5.99 5.99 41.45 3.56
632 974 6.870971 AATTCAGTGCTTCAAAATGCATTT 57.129 29.167 18.99 18.99 41.45 2.32
685 1027 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
686 1028 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
687 1029 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
688 1030 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
689 1031 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
690 1032 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
691 1033 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
692 1034 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
693 1035 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
694 1036 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
695 1037 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
696 1038 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
697 1039 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
698 1040 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
699 1041 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
700 1042 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
701 1043 6.489361 GCCTTCTAGGAATGTGATTTCATGAT 59.511 38.462 0.00 0.00 37.67 2.45
702 1044 7.521748 GCCTTCTAGGAATGTGATTTCATGATG 60.522 40.741 0.00 0.00 37.67 3.07
703 1045 7.718314 CCTTCTAGGAATGTGATTTCATGATGA 59.282 37.037 0.00 0.00 37.67 2.92
704 1046 9.117183 CTTCTAGGAATGTGATTTCATGATGAA 57.883 33.333 3.29 3.29 34.03 2.57
705 1047 9.636789 TTCTAGGAATGTGATTTCATGATGAAT 57.363 29.630 8.90 0.00 36.11 2.57
706 1048 9.636789 TCTAGGAATGTGATTTCATGATGAATT 57.363 29.630 8.90 5.47 36.11 2.17
709 1051 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
710 1052 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
711 1053 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
712 1054 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
713 1055 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
714 1056 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
715 1057 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
716 1058 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
717 1059 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
718 1060 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
719 1061 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
720 1062 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
721 1063 5.851720 TGATGAATTTTTGCAGGCACTTAA 58.148 33.333 0.00 0.00 34.60 1.85
722 1064 6.286758 TGATGAATTTTTGCAGGCACTTAAA 58.713 32.000 0.00 0.00 34.60 1.52
723 1065 6.765036 TGATGAATTTTTGCAGGCACTTAAAA 59.235 30.769 0.00 0.00 34.60 1.52
724 1066 6.356757 TGAATTTTTGCAGGCACTTAAAAC 57.643 33.333 4.91 0.00 34.60 2.43
725 1067 6.112058 TGAATTTTTGCAGGCACTTAAAACT 58.888 32.000 4.91 0.00 34.60 2.66
726 1068 6.597280 TGAATTTTTGCAGGCACTTAAAACTT 59.403 30.769 4.91 0.00 34.60 2.66
727 1069 7.120432 TGAATTTTTGCAGGCACTTAAAACTTT 59.880 29.630 4.91 0.00 34.60 2.66
728 1070 6.809630 TTTTTGCAGGCACTTAAAACTTTT 57.190 29.167 0.00 0.00 34.60 2.27
729 1071 5.793026 TTTGCAGGCACTTAAAACTTTTG 57.207 34.783 0.00 0.00 34.60 2.44
730 1072 4.464069 TGCAGGCACTTAAAACTTTTGT 57.536 36.364 0.00 0.00 34.60 2.83
731 1073 4.429108 TGCAGGCACTTAAAACTTTTGTC 58.571 39.130 0.00 0.00 34.60 3.18
732 1074 4.081972 TGCAGGCACTTAAAACTTTTGTCA 60.082 37.500 0.00 0.00 34.60 3.58
733 1075 4.867608 GCAGGCACTTAAAACTTTTGTCAA 59.132 37.500 0.00 0.00 34.60 3.18
734 1076 5.523552 GCAGGCACTTAAAACTTTTGTCAAT 59.476 36.000 0.00 0.00 34.60 2.57
735 1077 6.509997 GCAGGCACTTAAAACTTTTGTCAATG 60.510 38.462 0.00 0.00 34.60 2.82
736 1078 6.534793 CAGGCACTTAAAACTTTTGTCAATGT 59.465 34.615 0.00 0.00 34.60 2.71
737 1079 7.064490 CAGGCACTTAAAACTTTTGTCAATGTT 59.936 33.333 0.00 0.00 34.60 2.71
738 1080 7.606073 AGGCACTTAAAACTTTTGTCAATGTTT 59.394 29.630 9.87 9.87 37.32 2.83
739 1081 7.902917 GGCACTTAAAACTTTTGTCAATGTTTC 59.097 33.333 13.86 4.96 38.61 2.78
740 1082 8.655970 GCACTTAAAACTTTTGTCAATGTTTCT 58.344 29.630 13.86 9.23 38.61 2.52
744 1086 9.712305 TTAAAACTTTTGTCAATGTTTCTTCCA 57.288 25.926 13.86 0.00 38.61 3.53
745 1087 8.614469 AAAACTTTTGTCAATGTTTCTTCCAA 57.386 26.923 13.86 0.00 38.61 3.53
746 1088 8.614469 AAACTTTTGTCAATGTTTCTTCCAAA 57.386 26.923 9.87 0.00 36.13 3.28
747 1089 8.614469 AACTTTTGTCAATGTTTCTTCCAAAA 57.386 26.923 0.00 0.00 28.24 2.44
748 1090 8.614469 ACTTTTGTCAATGTTTCTTCCAAAAA 57.386 26.923 0.00 0.00 32.07 1.94
801 1143 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
802 1144 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
803 1145 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
804 1146 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
805 1147 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
818 1160 3.201342 CGGGAGCATATGAACTCGG 57.799 57.895 6.97 0.00 33.55 4.63
819 1161 0.319900 CGGGAGCATATGAACTCGGG 60.320 60.000 6.97 0.00 33.55 5.14
820 1162 0.759346 GGGAGCATATGAACTCGGGT 59.241 55.000 6.97 0.00 33.55 5.28
821 1163 1.541233 GGGAGCATATGAACTCGGGTG 60.541 57.143 6.97 0.00 33.55 4.61
822 1164 1.221414 GAGCATATGAACTCGGGTGC 58.779 55.000 6.97 0.00 0.00 5.01
823 1165 0.541392 AGCATATGAACTCGGGTGCA 59.459 50.000 0.00 0.00 35.15 4.57
824 1166 1.141657 AGCATATGAACTCGGGTGCAT 59.858 47.619 14.83 14.83 43.62 3.96
825 1167 2.368548 AGCATATGAACTCGGGTGCATA 59.631 45.455 18.62 18.62 45.11 3.14
827 1169 3.753272 GCATATGAACTCGGGTGCATATT 59.247 43.478 24.07 8.96 46.92 1.28
828 1170 4.935205 GCATATGAACTCGGGTGCATATTA 59.065 41.667 24.07 2.81 46.92 0.98
829 1171 5.063944 GCATATGAACTCGGGTGCATATTAG 59.936 44.000 24.07 15.78 46.92 1.73
830 1172 4.689612 ATGAACTCGGGTGCATATTAGT 57.310 40.909 7.28 0.00 39.78 2.24
831 1173 4.054780 TGAACTCGGGTGCATATTAGTC 57.945 45.455 0.00 0.00 0.00 2.59
832 1174 2.795175 ACTCGGGTGCATATTAGTCG 57.205 50.000 0.00 0.00 0.00 4.18
833 1175 1.269621 ACTCGGGTGCATATTAGTCGC 60.270 52.381 0.00 0.00 0.00 5.19
834 1176 0.318360 TCGGGTGCATATTAGTCGCG 60.318 55.000 0.00 0.00 36.19 5.87
835 1177 0.596600 CGGGTGCATATTAGTCGCGT 60.597 55.000 5.77 0.00 0.00 6.01
836 1178 1.137513 GGGTGCATATTAGTCGCGTC 58.862 55.000 5.77 0.00 0.00 5.19
837 1179 1.137513 GGTGCATATTAGTCGCGTCC 58.862 55.000 5.77 0.00 0.00 4.79
838 1180 1.137513 GTGCATATTAGTCGCGTCCC 58.862 55.000 5.77 0.00 0.00 4.46
839 1181 0.747852 TGCATATTAGTCGCGTCCCA 59.252 50.000 5.77 0.00 0.00 4.37
840 1182 1.137282 TGCATATTAGTCGCGTCCCAA 59.863 47.619 5.77 0.00 0.00 4.12
841 1183 2.206750 GCATATTAGTCGCGTCCCAAA 58.793 47.619 5.77 0.00 0.00 3.28
842 1184 2.033151 GCATATTAGTCGCGTCCCAAAC 60.033 50.000 5.77 0.00 0.00 2.93
1011 1362 4.506255 GGAGCAATGGGGGTCCGG 62.506 72.222 0.00 0.00 44.63 5.14
1832 2315 7.491696 GGCTTAGTTCTTGTGGTAGTATTACTG 59.508 40.741 6.60 0.00 0.00 2.74
1886 2369 0.756294 TTCTTGCTCAACCGAGGTCA 59.244 50.000 0.00 0.00 39.88 4.02
1923 2406 8.092068 GTCAGATACTCTCAGATAGTAGCAGTA 58.908 40.741 12.36 0.00 38.11 2.74
2106 2641 4.219944 ACGAGTGGACTGTAAAATCTGCTA 59.780 41.667 0.00 0.00 0.00 3.49
2107 2642 5.105310 ACGAGTGGACTGTAAAATCTGCTAT 60.105 40.000 0.00 0.00 0.00 2.97
2124 2659 3.578282 TGCTATTCACTTGACTGGTCAGA 59.422 43.478 4.84 0.00 41.13 3.27
2125 2660 4.040339 TGCTATTCACTTGACTGGTCAGAA 59.960 41.667 4.84 5.24 41.13 3.02
2171 2707 3.793465 GCTTGACTTGTCACTTTTCAGCC 60.793 47.826 2.62 0.00 0.00 4.85
2242 2978 3.016736 GCACAGTAGCACAATTATGGGT 58.983 45.455 0.00 0.00 30.39 4.51
2251 2987 2.358898 CACAATTATGGGTACTGCCAGC 59.641 50.000 0.00 0.00 39.65 4.85
2301 3037 7.096353 TGTCGTCTATCTTTTCAGTAACGTTTG 60.096 37.037 5.91 0.00 0.00 2.93
2493 3262 2.793585 CGTGGTGGTAGTACGTAGCATG 60.794 54.545 0.00 10.57 41.17 4.06
2494 3263 1.752498 TGGTGGTAGTACGTAGCATGG 59.248 52.381 0.00 0.00 41.17 3.66
2495 3264 1.068127 GGTGGTAGTACGTAGCATGGG 59.932 57.143 0.00 0.00 41.17 4.00
2496 3265 2.026641 GTGGTAGTACGTAGCATGGGA 58.973 52.381 0.00 0.00 41.17 4.37
2497 3266 2.428171 GTGGTAGTACGTAGCATGGGAA 59.572 50.000 0.00 0.00 41.17 3.97
2498 3267 3.069158 GTGGTAGTACGTAGCATGGGAAT 59.931 47.826 0.00 0.00 41.17 3.01
2499 3268 3.069016 TGGTAGTACGTAGCATGGGAATG 59.931 47.826 0.00 0.00 34.10 2.67
2500 3269 2.910688 AGTACGTAGCATGGGAATGG 57.089 50.000 0.00 0.00 0.00 3.16
2501 3270 1.202651 AGTACGTAGCATGGGAATGGC 60.203 52.381 0.00 0.00 0.00 4.40
2504 3273 1.148273 GTAGCATGGGAATGGCGGA 59.852 57.895 0.00 0.00 0.00 5.54
2529 3298 5.084818 TGGCACGTAGTAGTAGTAGTGTA 57.915 43.478 0.00 4.55 41.61 2.90
2531 3300 5.112686 GGCACGTAGTAGTAGTAGTGTAGT 58.887 45.833 0.00 0.00 41.61 2.73
2533 3302 5.006165 GCACGTAGTAGTAGTAGTGTAGTGG 59.994 48.000 13.66 0.00 41.61 4.00
2535 3304 7.258441 CACGTAGTAGTAGTAGTGTAGTGGTA 58.742 42.308 0.00 0.00 41.61 3.25
2536 3305 7.433719 CACGTAGTAGTAGTAGTGTAGTGGTAG 59.566 44.444 0.00 0.00 41.61 3.18
2538 3307 6.305272 AGTAGTAGTAGTGTAGTGGTAGCA 57.695 41.667 0.00 0.00 0.00 3.49
2539 3308 6.897986 AGTAGTAGTAGTGTAGTGGTAGCAT 58.102 40.000 0.00 0.00 0.00 3.79
2540 3309 7.344913 AGTAGTAGTAGTGTAGTGGTAGCATT 58.655 38.462 0.00 0.00 0.00 3.56
2541 3310 6.696441 AGTAGTAGTGTAGTGGTAGCATTC 57.304 41.667 0.00 0.00 0.00 2.67
2542 3311 5.593502 AGTAGTAGTGTAGTGGTAGCATTCC 59.406 44.000 0.00 0.00 0.00 3.01
2543 3312 4.611367 AGTAGTGTAGTGGTAGCATTCCT 58.389 43.478 0.00 0.00 0.00 3.36
2544 3313 4.645588 AGTAGTGTAGTGGTAGCATTCCTC 59.354 45.833 0.00 0.00 0.00 3.71
2545 3314 3.714144 AGTGTAGTGGTAGCATTCCTCT 58.286 45.455 0.00 0.00 34.01 3.69
2546 3315 3.702045 AGTGTAGTGGTAGCATTCCTCTC 59.298 47.826 0.00 0.00 32.23 3.20
2547 3316 3.031736 TGTAGTGGTAGCATTCCTCTCC 58.968 50.000 0.00 0.00 32.23 3.71
2548 3317 1.115467 AGTGGTAGCATTCCTCTCCG 58.885 55.000 0.00 0.00 0.00 4.63
2549 3318 1.112113 GTGGTAGCATTCCTCTCCGA 58.888 55.000 0.00 0.00 0.00 4.55
2550 3319 1.689273 GTGGTAGCATTCCTCTCCGAT 59.311 52.381 0.00 0.00 0.00 4.18
2551 3320 1.688735 TGGTAGCATTCCTCTCCGATG 59.311 52.381 0.00 0.00 0.00 3.84
2562 3331 0.101219 TCTCCGATGTCTGATGCGTG 59.899 55.000 0.00 0.00 0.00 5.34
2568 3337 0.742281 ATGTCTGATGCGTGGTGAGC 60.742 55.000 0.00 0.00 0.00 4.26
2571 3340 4.758251 TGATGCGTGGTGAGCGGG 62.758 66.667 0.00 0.00 37.44 6.13
2831 3717 1.198867 TCACCGAAACGCAATTCCATG 59.801 47.619 0.00 0.00 0.00 3.66
2900 3806 4.038522 CAGATGGATTGTACCTGATCGAGT 59.961 45.833 0.00 0.00 0.00 4.18
3188 4094 1.931172 ACGCAGCGTGGTAATTATCAC 59.069 47.619 22.28 17.41 39.18 3.06
3194 4105 3.196901 AGCGTGGTAATTATCACAGACCA 59.803 43.478 24.79 9.46 37.15 4.02
3206 4117 2.562738 TCACAGACCACATCGAGTCATT 59.437 45.455 5.46 0.00 35.38 2.57
3213 4124 6.756542 CAGACCACATCGAGTCATTAACATTA 59.243 38.462 5.46 0.00 35.38 1.90
3241 4182 4.024048 ACCAGTTTCGTTGCTGTAATTGAG 60.024 41.667 0.00 0.00 0.00 3.02
3248 4213 3.620374 CGTTGCTGTAATTGAGCTCTCAT 59.380 43.478 16.19 4.14 39.64 2.90
3579 4544 0.748005 GGTCATGAACATGGTCCCGG 60.748 60.000 8.62 0.00 39.24 5.73
3663 4628 2.759535 GACTGGTTAGTCCTCTACCACC 59.240 54.545 0.00 0.00 46.14 4.61
3671 4636 2.264794 CTCTACCACCGGGCACAC 59.735 66.667 6.32 0.00 37.90 3.82
3674 4639 3.605749 CTACCACCGGGCACACCAG 62.606 68.421 6.32 0.00 40.22 4.00
3685 4650 0.944311 GCACACCAGTCGTACCACTG 60.944 60.000 13.14 13.14 43.13 3.66
3688 4653 0.037326 CACCAGTCGTACCACTGCAT 60.037 55.000 14.49 2.85 42.29 3.96
3754 4719 2.354305 GTCGTGGTCTCGCAACGT 60.354 61.111 0.00 0.00 38.43 3.99
3755 4720 1.081906 GTCGTGGTCTCGCAACGTA 60.082 57.895 0.00 0.00 38.43 3.57
3756 4721 1.081906 TCGTGGTCTCGCAACGTAC 60.082 57.895 0.00 0.00 38.43 3.67
3757 4722 2.423031 CGTGGTCTCGCAACGTACG 61.423 63.158 15.01 15.01 32.79 3.67
3913 4878 3.763360 TGCATCAAAACTCCCCTGTAATG 59.237 43.478 0.00 0.00 0.00 1.90
3945 4910 0.959553 TGTTCACCCTCTCTGACGAC 59.040 55.000 0.00 0.00 0.00 4.34
4075 5040 0.318762 GGTGAAGGTCAAGAGCGTCT 59.681 55.000 14.37 0.00 37.99 4.18
4081 5046 1.153997 GTCAAGAGCGTCTCCGACC 60.154 63.158 12.16 0.00 35.63 4.79
4338 5307 4.254492 AGGAAATTCGTCTCCAAGTAAGC 58.746 43.478 0.00 0.00 33.83 3.09
4349 5318 4.748102 TCTCCAAGTAAGCTGTAAAACACG 59.252 41.667 0.00 0.00 0.00 4.49
4436 5405 4.498345 GCGAGTTACTCCCTCTGTATCAAG 60.498 50.000 6.80 0.00 0.00 3.02
4467 5436 9.950496 AAGATGTTTCTTGATACTATGACTGTT 57.050 29.630 0.00 0.00 40.74 3.16
4576 5547 6.851318 TGGATTCAGGATTTATTCATAGCCA 58.149 36.000 0.00 0.00 0.00 4.75
4648 5619 2.297315 TCTTCAGATCTCGCAACTGTGT 59.703 45.455 0.00 0.00 33.93 3.72
4741 5712 7.917730 AATGGGGTCATGAATTGAATTGATA 57.082 32.000 0.00 0.00 35.70 2.15
4742 5713 6.713762 TGGGGTCATGAATTGAATTGATAC 57.286 37.500 0.00 0.00 35.70 2.24
4951 5924 4.985538 TCCTGATTTGGACTGCTTTTACT 58.014 39.130 0.00 0.00 0.00 2.24
4959 5932 1.537202 GACTGCTTTTACTGCCTGGTG 59.463 52.381 0.00 0.00 0.00 4.17
4960 5933 1.133792 ACTGCTTTTACTGCCTGGTGT 60.134 47.619 0.00 0.00 0.00 4.16
4961 5934 1.956477 CTGCTTTTACTGCCTGGTGTT 59.044 47.619 0.00 0.00 0.00 3.32
4962 5935 2.362077 CTGCTTTTACTGCCTGGTGTTT 59.638 45.455 0.00 0.00 0.00 2.83
4963 5936 2.100584 TGCTTTTACTGCCTGGTGTTTG 59.899 45.455 0.00 0.00 0.00 2.93
4964 5937 2.360801 GCTTTTACTGCCTGGTGTTTGA 59.639 45.455 0.00 0.00 0.00 2.69
4965 5938 3.005791 GCTTTTACTGCCTGGTGTTTGAT 59.994 43.478 0.00 0.00 0.00 2.57
4966 5939 4.501400 GCTTTTACTGCCTGGTGTTTGATT 60.501 41.667 0.00 0.00 0.00 2.57
4967 5940 5.600696 CTTTTACTGCCTGGTGTTTGATTT 58.399 37.500 0.00 0.00 0.00 2.17
4968 5941 5.606348 TTTACTGCCTGGTGTTTGATTTT 57.394 34.783 0.00 0.00 0.00 1.82
4969 5942 5.606348 TTACTGCCTGGTGTTTGATTTTT 57.394 34.783 0.00 0.00 0.00 1.94
5034 6008 1.784301 TTTCTTGGGCCCGTGGATCA 61.784 55.000 19.37 0.00 0.00 2.92
5120 6097 4.993029 ACTTCACATTTTGAAAACCGGA 57.007 36.364 9.46 0.00 43.90 5.14
5125 6102 5.468592 TCACATTTTGAAAACCGGATGATG 58.531 37.500 9.46 3.27 0.00 3.07
5126 6103 4.091800 CACATTTTGAAAACCGGATGATGC 59.908 41.667 9.46 0.00 0.00 3.91
5128 6105 0.170116 TTGAAAACCGGATGATGCGC 59.830 50.000 9.46 0.00 0.00 6.09
5129 6106 0.957888 TGAAAACCGGATGATGCGCA 60.958 50.000 14.96 14.96 0.00 6.09
5130 6107 0.248215 GAAAACCGGATGATGCGCAG 60.248 55.000 18.32 1.98 0.00 5.18
5132 6109 2.819984 AAACCGGATGATGCGCAGGT 62.820 55.000 18.32 14.02 0.00 4.00
5133 6110 3.274586 CCGGATGATGCGCAGGTG 61.275 66.667 18.32 1.88 0.00 4.00
5140 6117 2.124151 ATGCGCAGGTGGGGATTC 60.124 61.111 18.32 0.00 35.65 2.52
5143 6120 1.678970 GCGCAGGTGGGGATTCTTT 60.679 57.895 0.30 0.00 0.00 2.52
5145 6122 1.256812 CGCAGGTGGGGATTCTTTTT 58.743 50.000 0.00 0.00 0.00 1.94
5165 6142 1.795768 TTGTTCTGTAGCGGCAAGAG 58.204 50.000 1.45 0.00 0.00 2.85
5166 6143 0.679505 TGTTCTGTAGCGGCAAGAGT 59.320 50.000 1.45 0.00 0.00 3.24
5182 6159 7.247728 CGGCAAGAGTAAAAGTATTTGCATAA 58.752 34.615 8.93 0.00 41.84 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.240641 ATTCATGCAAACACGGCGGA 61.241 50.000 13.24 0.00 0.00 5.54
1 2 0.388391 AATTCATGCAAACACGGCGG 60.388 50.000 13.24 2.35 0.00 6.13
2 3 1.386412 GAAATTCATGCAAACACGGCG 59.614 47.619 4.80 4.80 0.00 6.46
3 4 2.402305 TGAAATTCATGCAAACACGGC 58.598 42.857 0.00 0.00 0.00 5.68
4 5 3.613737 GGATGAAATTCATGCAAACACGG 59.386 43.478 20.18 0.00 43.55 4.94
16 17 9.463443 CCTAATTGAATTAACGGGATGAAATTC 57.537 33.333 0.00 0.00 38.32 2.17
23 24 8.356000 TCAAAACCTAATTGAATTAACGGGAT 57.644 30.769 8.24 0.00 34.04 3.85
32 33 9.382275 GGCATACATTTCAAAACCTAATTGAAT 57.618 29.630 2.88 0.00 43.94 2.57
35 36 8.442384 GTTGGCATACATTTCAAAACCTAATTG 58.558 33.333 0.00 0.00 0.00 2.32
41 42 4.152223 GCTGTTGGCATACATTTCAAAACC 59.848 41.667 0.00 0.00 41.35 3.27
42 43 5.268107 GCTGTTGGCATACATTTCAAAAC 57.732 39.130 0.00 0.00 41.35 2.43
58 59 2.485426 AGACCGTCATTCAATGCTGTTG 59.515 45.455 0.40 0.00 0.00 3.33
59 60 2.744202 GAGACCGTCATTCAATGCTGTT 59.256 45.455 0.40 0.00 0.00 3.16
65 66 5.917462 TGATGTATGAGACCGTCATTCAAT 58.083 37.500 0.40 0.00 44.05 2.57
69 70 6.568653 CGATACTGATGTATGAGACCGTCATT 60.569 42.308 0.40 0.00 44.05 2.57
75 76 4.519350 TCACCGATACTGATGTATGAGACC 59.481 45.833 0.00 0.00 39.29 3.85
82 83 4.021229 ACCAGTTCACCGATACTGATGTA 58.979 43.478 0.00 0.00 43.45 2.29
89 90 1.192428 AGGGACCAGTTCACCGATAC 58.808 55.000 0.00 0.00 0.00 2.24
91 92 0.324943 CAAGGGACCAGTTCACCGAT 59.675 55.000 0.00 0.00 0.00 4.18
109 110 1.369839 TTGCTTCGTGTCCGCAAACA 61.370 50.000 0.00 0.00 40.33 2.83
110 111 0.248296 TTTGCTTCGTGTCCGCAAAC 60.248 50.000 4.72 0.00 45.46 2.93
112 113 0.665835 AATTTGCTTCGTGTCCGCAA 59.334 45.000 0.00 0.00 41.41 4.85
113 114 0.040514 CAATTTGCTTCGTGTCCGCA 60.041 50.000 0.00 0.00 0.00 5.69
114 115 0.729140 CCAATTTGCTTCGTGTCCGC 60.729 55.000 0.00 0.00 0.00 5.54
115 116 0.729140 GCCAATTTGCTTCGTGTCCG 60.729 55.000 0.00 0.00 0.00 4.79
117 118 0.237235 TCGCCAATTTGCTTCGTGTC 59.763 50.000 0.00 0.00 0.00 3.67
118 119 0.238289 CTCGCCAATTTGCTTCGTGT 59.762 50.000 0.00 0.00 0.00 4.49
119 120 0.238289 ACTCGCCAATTTGCTTCGTG 59.762 50.000 0.00 0.00 0.00 4.35
120 121 0.951558 AACTCGCCAATTTGCTTCGT 59.048 45.000 0.00 0.00 0.00 3.85
121 122 2.892373 TAACTCGCCAATTTGCTTCG 57.108 45.000 0.00 0.00 0.00 3.79
122 123 2.908626 CGTTAACTCGCCAATTTGCTTC 59.091 45.455 3.71 0.00 0.00 3.86
123 124 2.292292 ACGTTAACTCGCCAATTTGCTT 59.708 40.909 3.71 0.00 0.00 3.91
126 131 5.119588 TCTCTAACGTTAACTCGCCAATTTG 59.880 40.000 9.68 0.00 0.00 2.32
136 141 5.927281 TTAGGGCATCTCTAACGTTAACT 57.073 39.130 9.68 1.22 0.00 2.24
137 142 8.652810 TTTATTAGGGCATCTCTAACGTTAAC 57.347 34.615 9.68 0.00 30.61 2.01
146 151 6.721318 TCAACAGTTTTATTAGGGCATCTCT 58.279 36.000 0.00 0.00 0.00 3.10
148 153 9.646522 AATATCAACAGTTTTATTAGGGCATCT 57.353 29.630 0.00 0.00 0.00 2.90
170 175 7.710907 TCGCAGAGCTCAAGTATAAACAAATAT 59.289 33.333 17.77 0.00 0.00 1.28
246 251 4.744631 GCACACCATTCTAACCTTTTGTTG 59.255 41.667 0.00 0.00 37.83 3.33
360 365 2.616842 AGTCACCCGTAAACAGCTTTTG 59.383 45.455 0.00 0.00 0.00 2.44
430 772 2.665519 CGGGTGCAGAATGAACTTTTCG 60.666 50.000 0.00 0.00 46.71 3.46
431 773 2.552315 TCGGGTGCAGAATGAACTTTTC 59.448 45.455 0.00 0.00 46.71 2.29
432 774 2.554032 CTCGGGTGCAGAATGAACTTTT 59.446 45.455 0.00 0.00 46.71 2.27
433 775 2.154462 CTCGGGTGCAGAATGAACTTT 58.846 47.619 0.00 0.00 46.71 2.66
434 776 1.813513 CTCGGGTGCAGAATGAACTT 58.186 50.000 0.00 0.00 46.71 2.66
435 777 0.674895 GCTCGGGTGCAGAATGAACT 60.675 55.000 0.00 0.00 46.71 3.01
436 778 0.674895 AGCTCGGGTGCAGAATGAAC 60.675 55.000 0.00 0.00 46.86 3.18
437 779 0.391661 GAGCTCGGGTGCAGAATGAA 60.392 55.000 0.00 0.00 39.69 2.57
438 780 1.219124 GAGCTCGGGTGCAGAATGA 59.781 57.895 0.00 0.00 39.69 2.57
439 781 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
440 782 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
441 783 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
442 784 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
443 785 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
444 786 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
445 787 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
462 804 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
463 805 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
464 806 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
465 807 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
466 808 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
521 863 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
522 864 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
523 865 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
524 866 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
525 867 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
526 868 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
527 869 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
528 870 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
529 871 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
530 872 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
531 873 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
532 874 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
533 875 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
534 876 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
535 877 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
536 878 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
537 879 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
538 880 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
539 881 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
540 882 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
541 883 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
542 884 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
543 885 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
544 886 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
545 887 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
546 888 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
547 889 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
548 890 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
549 891 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
550 892 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
551 893 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
552 894 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
553 895 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
554 896 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
555 897 8.937884 TGTAATTTCATGATGAATTTTTGCAGG 58.062 29.630 17.23 0.00 36.11 4.85
566 908 9.123902 CCTTACAGGAATGTAATTTCATGATGA 57.876 33.333 0.00 0.00 39.18 2.92
567 909 7.864379 GCCTTACAGGAATGTAATTTCATGATG 59.136 37.037 0.00 1.62 39.18 3.07
568 910 7.255242 CGCCTTACAGGAATGTAATTTCATGAT 60.255 37.037 0.00 0.00 39.18 2.45
569 911 6.038161 CGCCTTACAGGAATGTAATTTCATGA 59.962 38.462 5.92 0.00 39.18 3.07
570 912 6.183360 ACGCCTTACAGGAATGTAATTTCATG 60.183 38.462 0.00 0.00 41.77 3.07
571 913 5.885912 ACGCCTTACAGGAATGTAATTTCAT 59.114 36.000 1.62 0.00 37.67 2.57
572 914 5.123186 CACGCCTTACAGGAATGTAATTTCA 59.877 40.000 1.62 0.00 37.67 2.69
573 915 5.448632 CCACGCCTTACAGGAATGTAATTTC 60.449 44.000 1.62 0.00 37.67 2.17
574 916 4.398044 CCACGCCTTACAGGAATGTAATTT 59.602 41.667 1.62 0.00 37.67 1.82
575 917 3.945285 CCACGCCTTACAGGAATGTAATT 59.055 43.478 1.62 0.00 37.67 1.40
576 918 3.054655 ACCACGCCTTACAGGAATGTAAT 60.055 43.478 1.62 0.00 37.67 1.89
577 919 2.303600 ACCACGCCTTACAGGAATGTAA 59.696 45.455 0.00 1.31 37.67 2.41
578 920 1.903860 ACCACGCCTTACAGGAATGTA 59.096 47.619 0.00 0.00 37.67 2.29
579 921 0.690762 ACCACGCCTTACAGGAATGT 59.309 50.000 0.00 0.00 37.67 2.71
580 922 2.684001 TACCACGCCTTACAGGAATG 57.316 50.000 0.00 0.00 37.67 2.67
581 923 3.706600 TTTACCACGCCTTACAGGAAT 57.293 42.857 0.00 0.00 37.67 3.01
582 924 3.488778 TTTTACCACGCCTTACAGGAA 57.511 42.857 0.00 0.00 37.67 3.36
583 925 3.488778 TTTTTACCACGCCTTACAGGA 57.511 42.857 0.00 0.00 37.67 3.86
602 944 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
603 945 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
604 946 6.093771 TGCATTTTGAAGCACTGAATTTGTTT 59.906 30.769 0.00 0.00 35.51 2.83
605 947 5.585445 TGCATTTTGAAGCACTGAATTTGTT 59.415 32.000 0.00 0.00 35.51 2.83
606 948 5.117584 TGCATTTTGAAGCACTGAATTTGT 58.882 33.333 0.00 0.00 35.51 2.83
607 949 5.660629 TGCATTTTGAAGCACTGAATTTG 57.339 34.783 0.00 0.00 35.51 2.32
608 950 6.870971 AATGCATTTTGAAGCACTGAATTT 57.129 29.167 5.99 0.00 44.49 1.82
609 951 6.664515 CAAATGCATTTTGAAGCACTGAATT 58.335 32.000 21.95 0.00 46.36 2.17
610 952 6.236017 CAAATGCATTTTGAAGCACTGAAT 57.764 33.333 21.95 0.00 46.36 2.57
611 953 5.660629 CAAATGCATTTTGAAGCACTGAA 57.339 34.783 21.95 0.00 46.36 3.02
666 1008 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
667 1009 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
668 1010 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
669 1011 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
670 1012 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
671 1013 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
672 1014 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
673 1015 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
674 1016 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
675 1017 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
676 1018 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
677 1019 7.718314 TCATCATGAAATCACATTCCTAGAAGG 59.282 37.037 0.00 0.00 36.46 3.46
678 1020 8.672823 TCATCATGAAATCACATTCCTAGAAG 57.327 34.615 0.00 0.00 0.00 2.85
679 1021 9.636789 ATTCATCATGAAATCACATTCCTAGAA 57.363 29.630 3.63 0.00 40.12 2.10
680 1022 9.636789 AATTCATCATGAAATCACATTCCTAGA 57.363 29.630 3.63 0.00 40.12 2.43
683 1025 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
684 1026 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
685 1027 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
686 1028 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
687 1029 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
688 1030 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
689 1031 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
690 1032 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
691 1033 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
692 1034 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
693 1035 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
694 1036 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
695 1037 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
696 1038 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
697 1039 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
698 1040 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
699 1041 6.783892 TTTAAGTGCCTGCAAAAATTCATC 57.216 33.333 0.00 0.00 0.00 2.92
700 1042 6.767423 AGTTTTAAGTGCCTGCAAAAATTCAT 59.233 30.769 0.00 0.00 0.00 2.57
701 1043 6.112058 AGTTTTAAGTGCCTGCAAAAATTCA 58.888 32.000 0.00 0.00 0.00 2.57
702 1044 6.603237 AGTTTTAAGTGCCTGCAAAAATTC 57.397 33.333 0.00 0.00 0.00 2.17
703 1045 7.389803 AAAGTTTTAAGTGCCTGCAAAAATT 57.610 28.000 0.00 0.00 31.70 1.82
704 1046 7.094420 ACAAAAGTTTTAAGTGCCTGCAAAAAT 60.094 29.630 0.00 0.00 0.00 1.82
705 1047 6.205658 ACAAAAGTTTTAAGTGCCTGCAAAAA 59.794 30.769 0.00 0.00 0.00 1.94
706 1048 5.703130 ACAAAAGTTTTAAGTGCCTGCAAAA 59.297 32.000 0.00 0.00 0.00 2.44
707 1049 5.241662 ACAAAAGTTTTAAGTGCCTGCAAA 58.758 33.333 0.00 0.00 0.00 3.68
708 1050 4.826556 ACAAAAGTTTTAAGTGCCTGCAA 58.173 34.783 0.00 0.00 0.00 4.08
709 1051 4.081972 TGACAAAAGTTTTAAGTGCCTGCA 60.082 37.500 0.00 0.00 0.00 4.41
710 1052 4.429108 TGACAAAAGTTTTAAGTGCCTGC 58.571 39.130 0.00 0.00 0.00 4.85
711 1053 6.534793 ACATTGACAAAAGTTTTAAGTGCCTG 59.465 34.615 0.00 0.00 0.00 4.85
712 1054 6.639563 ACATTGACAAAAGTTTTAAGTGCCT 58.360 32.000 0.00 0.00 0.00 4.75
713 1055 6.902224 ACATTGACAAAAGTTTTAAGTGCC 57.098 33.333 0.00 0.00 0.00 5.01
714 1056 8.655970 AGAAACATTGACAAAAGTTTTAAGTGC 58.344 29.630 17.76 8.51 37.33 4.40
718 1060 9.712305 TGGAAGAAACATTGACAAAAGTTTTAA 57.288 25.926 17.76 0.00 37.33 1.52
719 1061 9.712305 TTGGAAGAAACATTGACAAAAGTTTTA 57.288 25.926 17.76 5.91 37.33 1.52
720 1062 8.614469 TTGGAAGAAACATTGACAAAAGTTTT 57.386 26.923 17.76 0.00 37.33 2.43
721 1063 8.614469 TTTGGAAGAAACATTGACAAAAGTTT 57.386 26.923 17.09 17.09 39.28 2.66
722 1064 8.614469 TTTTGGAAGAAACATTGACAAAAGTT 57.386 26.923 0.00 0.00 33.15 2.66
723 1065 8.614469 TTTTTGGAAGAAACATTGACAAAAGT 57.386 26.923 0.00 0.00 37.55 2.66
778 1120 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
779 1121 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
780 1122 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
781 1123 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
782 1124 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
783 1125 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
784 1126 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
785 1127 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
786 1128 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
787 1129 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
788 1130 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
789 1131 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
790 1132 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
799 1141 0.946221 CCGAGTTCATATGCTCCCGC 60.946 60.000 0.00 0.00 0.00 6.13
800 1142 0.319900 CCCGAGTTCATATGCTCCCG 60.320 60.000 0.00 0.00 0.00 5.14
801 1143 0.759346 ACCCGAGTTCATATGCTCCC 59.241 55.000 0.00 0.00 0.00 4.30
802 1144 1.871080 CACCCGAGTTCATATGCTCC 58.129 55.000 0.00 0.00 0.00 4.70
803 1145 1.221414 GCACCCGAGTTCATATGCTC 58.779 55.000 0.00 0.00 0.00 4.26
804 1146 0.541392 TGCACCCGAGTTCATATGCT 59.459 50.000 0.00 0.00 34.18 3.79
805 1147 1.597742 ATGCACCCGAGTTCATATGC 58.402 50.000 0.00 0.00 27.22 3.14
806 1148 6.166279 ACTAATATGCACCCGAGTTCATATG 58.834 40.000 3.21 0.00 40.53 1.78
807 1149 6.360370 ACTAATATGCACCCGAGTTCATAT 57.640 37.500 0.00 0.00 42.38 1.78
808 1150 5.564063 CGACTAATATGCACCCGAGTTCATA 60.564 44.000 0.00 0.00 36.69 2.15
809 1151 4.632153 GACTAATATGCACCCGAGTTCAT 58.368 43.478 0.00 0.00 34.12 2.57
810 1152 3.490249 CGACTAATATGCACCCGAGTTCA 60.490 47.826 0.00 0.00 0.00 3.18
811 1153 3.050619 CGACTAATATGCACCCGAGTTC 58.949 50.000 0.00 0.00 0.00 3.01
812 1154 2.802057 GCGACTAATATGCACCCGAGTT 60.802 50.000 0.00 0.00 0.00 3.01
813 1155 1.269621 GCGACTAATATGCACCCGAGT 60.270 52.381 0.00 0.00 0.00 4.18
814 1156 1.419374 GCGACTAATATGCACCCGAG 58.581 55.000 0.00 0.00 0.00 4.63
815 1157 0.318360 CGCGACTAATATGCACCCGA 60.318 55.000 0.00 0.00 0.00 5.14
816 1158 0.596600 ACGCGACTAATATGCACCCG 60.597 55.000 15.93 0.00 0.00 5.28
817 1159 1.137513 GACGCGACTAATATGCACCC 58.862 55.000 15.93 0.00 0.00 4.61
818 1160 1.137513 GGACGCGACTAATATGCACC 58.862 55.000 15.93 0.00 0.00 5.01
819 1161 1.137513 GGGACGCGACTAATATGCAC 58.862 55.000 15.93 0.00 0.00 4.57
820 1162 0.747852 TGGGACGCGACTAATATGCA 59.252 50.000 15.93 0.00 0.00 3.96
821 1163 1.860676 TTGGGACGCGACTAATATGC 58.139 50.000 15.93 0.00 0.00 3.14
822 1164 2.217847 CGTTTGGGACGCGACTAATATG 59.782 50.000 15.93 3.04 45.86 1.78
823 1165 2.466846 CGTTTGGGACGCGACTAATAT 58.533 47.619 15.93 0.00 45.86 1.28
824 1166 1.912001 CGTTTGGGACGCGACTAATA 58.088 50.000 15.93 0.00 45.86 0.98
825 1167 2.745728 CGTTTGGGACGCGACTAAT 58.254 52.632 15.93 0.00 45.86 1.73
826 1168 4.248402 CGTTTGGGACGCGACTAA 57.752 55.556 15.93 6.70 45.86 2.24
834 1176 0.096454 GTGAATAGCGCGTTTGGGAC 59.904 55.000 8.43 0.00 0.00 4.46
835 1177 0.320858 TGTGAATAGCGCGTTTGGGA 60.321 50.000 8.43 0.00 0.00 4.37
836 1178 0.179200 GTGTGAATAGCGCGTTTGGG 60.179 55.000 8.43 0.00 0.00 4.12
837 1179 0.179200 GGTGTGAATAGCGCGTTTGG 60.179 55.000 8.43 0.00 0.00 3.28
838 1180 0.179200 GGGTGTGAATAGCGCGTTTG 60.179 55.000 8.43 0.00 0.00 2.93
839 1181 1.632046 CGGGTGTGAATAGCGCGTTT 61.632 55.000 8.43 0.00 34.60 3.60
840 1182 2.098233 CGGGTGTGAATAGCGCGTT 61.098 57.895 8.43 3.54 34.60 4.84
841 1183 2.508439 CGGGTGTGAATAGCGCGT 60.508 61.111 8.43 0.00 34.60 6.01
842 1184 2.508439 ACGGGTGTGAATAGCGCG 60.508 61.111 0.00 0.00 42.79 6.86
963 1310 1.731969 CTTCGGCAAGCAAGCAAGC 60.732 57.895 2.78 0.00 35.83 4.01
964 1311 4.546637 CTTCGGCAAGCAAGCAAG 57.453 55.556 2.78 0.00 35.83 4.01
1237 1588 4.500116 GTCGAGGGACTGAGCGGC 62.500 72.222 0.00 0.00 41.55 6.53
1759 2167 9.263446 TCCTAAACCTAGTTAAGCAATTAGAGA 57.737 33.333 0.00 0.00 0.00 3.10
1764 2172 7.639378 TCCATCCTAAACCTAGTTAAGCAATT 58.361 34.615 0.00 0.00 0.00 2.32
1832 2315 4.125703 CCATTTCTCACTACTCCAGATGC 58.874 47.826 0.00 0.00 0.00 3.91
1923 2406 5.537300 TTCTGCAGTTTGTTCTCTCTAGT 57.463 39.130 14.67 0.00 0.00 2.57
2030 2520 8.046708 TCATAGTTGCATAATTCACAGTTAGGT 58.953 33.333 0.00 0.00 0.00 3.08
2031 2521 8.437360 TCATAGTTGCATAATTCACAGTTAGG 57.563 34.615 0.00 0.00 0.00 2.69
2032 2522 9.708222 GTTCATAGTTGCATAATTCACAGTTAG 57.292 33.333 0.00 0.00 0.00 2.34
2033 2523 9.448438 AGTTCATAGTTGCATAATTCACAGTTA 57.552 29.630 0.00 0.00 0.00 2.24
2035 2525 7.928307 AGTTCATAGTTGCATAATTCACAGT 57.072 32.000 0.00 0.00 0.00 3.55
2039 2529 9.448438 AGTTGTAGTTCATAGTTGCATAATTCA 57.552 29.630 0.00 0.00 0.00 2.57
2070 2560 2.548057 TCCACTCGTGCTGTTTCAATTC 59.452 45.455 0.00 0.00 0.00 2.17
2071 2561 2.290641 GTCCACTCGTGCTGTTTCAATT 59.709 45.455 0.00 0.00 0.00 2.32
2073 2563 1.134521 AGTCCACTCGTGCTGTTTCAA 60.135 47.619 0.00 0.00 0.00 2.69
2106 2641 4.101585 TGAGTTCTGACCAGTCAAGTGAAT 59.898 41.667 1.58 0.00 39.39 2.57
2107 2642 3.450817 TGAGTTCTGACCAGTCAAGTGAA 59.549 43.478 1.58 0.00 39.39 3.18
2124 2659 6.942532 TTTTTAATGAGTGACAGCTGAGTT 57.057 33.333 23.35 0.00 0.00 3.01
2149 2685 3.366719 GCTGAAAAGTGACAAGTCAAGC 58.633 45.455 4.20 5.60 41.85 4.01
2156 2692 1.021202 CACCGGCTGAAAAGTGACAA 58.979 50.000 0.00 0.00 31.79 3.18
2171 2707 3.906998 TGTCAATAATTTTGTGGCACCG 58.093 40.909 16.26 0.00 0.00 4.94
2242 2978 2.930019 AGGTGCAGGCTGGCAGTA 60.930 61.111 17.64 0.00 45.96 2.74
2251 2987 2.666190 CGGTGTCACAGGTGCAGG 60.666 66.667 5.12 0.00 0.00 4.85
2405 3171 5.760743 GGAATTACTTCAGGGTTCAGATAGC 59.239 44.000 0.00 0.00 32.70 2.97
2452 3218 1.239347 GTTGGCTTGTTCTGAGGTCC 58.761 55.000 0.00 0.00 0.00 4.46
2493 3262 2.057408 TGCCATTTCCGCCATTCCC 61.057 57.895 0.00 0.00 0.00 3.97
2494 3263 1.141665 GTGCCATTTCCGCCATTCC 59.858 57.895 0.00 0.00 0.00 3.01
2495 3264 1.226660 CGTGCCATTTCCGCCATTC 60.227 57.895 0.00 0.00 0.00 2.67
2496 3265 0.678366 TACGTGCCATTTCCGCCATT 60.678 50.000 0.00 0.00 0.00 3.16
2497 3266 1.078072 TACGTGCCATTTCCGCCAT 60.078 52.632 0.00 0.00 0.00 4.40
2498 3267 1.743623 CTACGTGCCATTTCCGCCA 60.744 57.895 0.00 0.00 0.00 5.69
2499 3268 0.460635 TACTACGTGCCATTTCCGCC 60.461 55.000 0.00 0.00 0.00 6.13
2500 3269 0.928229 CTACTACGTGCCATTTCCGC 59.072 55.000 0.00 0.00 0.00 5.54
2501 3270 2.288961 ACTACTACGTGCCATTTCCG 57.711 50.000 0.00 0.00 0.00 4.30
2504 3273 5.416952 ACACTACTACTACTACGTGCCATTT 59.583 40.000 0.00 0.00 0.00 2.32
2529 3298 1.115467 CGGAGAGGAATGCTACCACT 58.885 55.000 0.00 0.00 0.00 4.00
2531 3300 1.688735 CATCGGAGAGGAATGCTACCA 59.311 52.381 0.00 0.00 43.16 3.25
2533 3302 2.625790 AGACATCGGAGAGGAATGCTAC 59.374 50.000 0.00 0.00 43.16 3.58
2535 3304 1.411977 CAGACATCGGAGAGGAATGCT 59.588 52.381 0.00 0.00 43.16 3.79
2536 3305 1.410517 TCAGACATCGGAGAGGAATGC 59.589 52.381 0.00 0.00 43.16 3.56
2538 3307 2.036992 GCATCAGACATCGGAGAGGAAT 59.963 50.000 0.00 0.00 43.16 3.01
2539 3308 1.410517 GCATCAGACATCGGAGAGGAA 59.589 52.381 0.00 0.00 43.16 3.36
2540 3309 1.035923 GCATCAGACATCGGAGAGGA 58.964 55.000 0.00 0.00 43.16 3.71
2542 3311 0.383590 ACGCATCAGACATCGGAGAG 59.616 55.000 0.00 0.00 43.63 3.20
2543 3312 0.101219 CACGCATCAGACATCGGAGA 59.899 55.000 0.00 0.00 45.75 3.71
2544 3313 0.873312 CCACGCATCAGACATCGGAG 60.873 60.000 0.00 0.00 0.00 4.63
2545 3314 1.141665 CCACGCATCAGACATCGGA 59.858 57.895 0.00 0.00 0.00 4.55
2546 3315 1.153568 ACCACGCATCAGACATCGG 60.154 57.895 0.00 0.00 0.00 4.18
2547 3316 0.458370 TCACCACGCATCAGACATCG 60.458 55.000 0.00 0.00 0.00 3.84
2548 3317 1.284657 CTCACCACGCATCAGACATC 58.715 55.000 0.00 0.00 0.00 3.06
2549 3318 0.742281 GCTCACCACGCATCAGACAT 60.742 55.000 0.00 0.00 0.00 3.06
2550 3319 1.374631 GCTCACCACGCATCAGACA 60.375 57.895 0.00 0.00 0.00 3.41
2551 3320 2.447887 CGCTCACCACGCATCAGAC 61.448 63.158 0.00 0.00 0.00 3.51
2711 3596 1.675219 GTAGGTGAGGCGGTTGGAA 59.325 57.895 0.00 0.00 0.00 3.53
2831 3717 3.249189 TGAGTGACCAGGGGTGGC 61.249 66.667 0.00 0.00 35.25 5.01
3188 4094 4.494484 TGTTAATGACTCGATGTGGTCTG 58.506 43.478 4.43 0.00 34.01 3.51
3194 4105 9.095065 GGTAAGTTAATGTTAATGACTCGATGT 57.905 33.333 0.00 0.00 0.00 3.06
3206 4117 7.227116 AGCAACGAAACTGGTAAGTTAATGTTA 59.773 33.333 0.00 0.00 46.15 2.41
3241 4182 2.022195 TGTCGTACCTACCATGAGAGC 58.978 52.381 0.00 0.00 0.00 4.09
3248 4213 3.021695 CTCCATCTTGTCGTACCTACCA 58.978 50.000 0.00 0.00 0.00 3.25
3284 4249 4.361971 TCCGAGACCTCCGGCAGT 62.362 66.667 0.00 0.00 46.10 4.40
3579 4544 4.133796 GCTGGAATTGGCCACGGC 62.134 66.667 3.88 7.11 41.06 5.68
3663 4628 2.431942 GTACGACTGGTGTGCCCG 60.432 66.667 0.00 0.00 35.15 6.13
3671 4636 0.740868 CCATGCAGTGGTACGACTGG 60.741 60.000 31.25 18.70 43.17 4.00
3685 4650 2.124151 CTGTGGTAGGGGCCATGC 60.124 66.667 4.39 0.06 41.08 4.06
3688 4653 1.229820 ATCACTGTGGTAGGGGCCA 60.230 57.895 4.39 0.00 35.93 5.36
3691 4656 0.541863 GGTGATCACTGTGGTAGGGG 59.458 60.000 24.50 0.00 0.00 4.79
3754 4719 2.029739 TGCAACGAGATCAGAAACCGTA 60.030 45.455 0.00 0.00 32.81 4.02
3755 4720 1.270094 TGCAACGAGATCAGAAACCGT 60.270 47.619 0.00 0.00 34.74 4.83
3756 4721 1.428448 TGCAACGAGATCAGAAACCG 58.572 50.000 0.00 0.00 0.00 4.44
3757 4722 2.352960 GGATGCAACGAGATCAGAAACC 59.647 50.000 0.00 0.00 0.00 3.27
3958 4923 2.074576 CATCTCACACCTTGCAGAGTG 58.925 52.381 14.65 14.65 39.93 3.51
4081 5046 2.187946 GCTGTCCCACCTCATCCG 59.812 66.667 0.00 0.00 0.00 4.18
4236 5205 3.311048 GCGATCCAACTTTGAGATCTTCC 59.689 47.826 0.00 0.00 35.03 3.46
4338 5307 7.753132 ACATACAAATTATGCCGTGTTTTACAG 59.247 33.333 0.00 0.00 0.00 2.74
4349 5318 6.851609 TCAAGTGACACATACAAATTATGCC 58.148 36.000 8.59 0.00 0.00 4.40
4576 5547 3.055819 TGCGAGATCTGAAAGCCTAAGTT 60.056 43.478 0.00 0.00 0.00 2.66
4741 5712 2.092753 CCTGCCCTGTCAATATGTCTGT 60.093 50.000 0.00 0.00 0.00 3.41
4742 5713 2.171237 TCCTGCCCTGTCAATATGTCTG 59.829 50.000 0.00 0.00 0.00 3.51
4982 5955 9.669353 CCAGGATAATAAAATTTCAATCACTCG 57.331 33.333 0.00 0.00 0.00 4.18
4983 5956 9.971922 CCCAGGATAATAAAATTTCAATCACTC 57.028 33.333 0.00 0.00 0.00 3.51
4984 5957 8.424133 GCCCAGGATAATAAAATTTCAATCACT 58.576 33.333 0.00 0.00 0.00 3.41
4985 5958 8.424133 AGCCCAGGATAATAAAATTTCAATCAC 58.576 33.333 0.00 0.00 0.00 3.06
4986 5959 8.423349 CAGCCCAGGATAATAAAATTTCAATCA 58.577 33.333 0.00 0.00 0.00 2.57
5034 6008 2.291153 ACATGCCAGCCTACTCAACAAT 60.291 45.455 0.00 0.00 0.00 2.71
5120 6097 2.288642 AATCCCCACCTGCGCATCAT 62.289 55.000 12.24 0.00 0.00 2.45
5125 6102 1.250840 AAAAGAATCCCCACCTGCGC 61.251 55.000 0.00 0.00 0.00 6.09
5126 6103 1.256812 AAAAAGAATCCCCACCTGCG 58.743 50.000 0.00 0.00 0.00 5.18
5143 6120 2.946329 TCTTGCCGCTACAGAACAAAAA 59.054 40.909 0.00 0.00 0.00 1.94
5145 6122 2.143122 CTCTTGCCGCTACAGAACAAA 58.857 47.619 0.00 0.00 0.00 2.83
5146 6123 1.070134 ACTCTTGCCGCTACAGAACAA 59.930 47.619 0.00 0.00 0.00 2.83
5147 6124 0.679505 ACTCTTGCCGCTACAGAACA 59.320 50.000 0.00 0.00 0.00 3.18
5148 6125 2.649331 TACTCTTGCCGCTACAGAAC 57.351 50.000 0.00 0.00 0.00 3.01
5149 6126 3.671008 TTTACTCTTGCCGCTACAGAA 57.329 42.857 0.00 0.00 0.00 3.02
5150 6127 3.006537 ACTTTTACTCTTGCCGCTACAGA 59.993 43.478 0.00 0.00 0.00 3.41
5151 6128 3.326747 ACTTTTACTCTTGCCGCTACAG 58.673 45.455 0.00 0.00 0.00 2.74
5155 6132 4.379499 GCAAATACTTTTACTCTTGCCGCT 60.379 41.667 0.00 0.00 34.49 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.