Multiple sequence alignment - TraesCS6A01G255900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G255900 chr6A 100.000 7043 0 0 1 7043 474988468 474981426 0.000000e+00 13007.0
1 TraesCS6A01G255900 chr6A 88.393 112 13 0 4504 4615 474983842 474983731 1.230000e-27 135.0
2 TraesCS6A01G255900 chr6A 88.393 112 13 0 4627 4738 474983965 474983854 1.230000e-27 135.0
3 TraesCS6A01G255900 chr6B 91.695 3865 171 58 2 3836 485300646 485304390 0.000000e+00 5221.0
4 TraesCS6A01G255900 chr6B 96.125 1058 35 4 5560 6614 485304853 485305907 0.000000e+00 1722.0
5 TraesCS6A01G255900 chr6B 87.105 1233 117 14 4304 5513 502474028 502475241 0.000000e+00 1358.0
6 TraesCS6A01G255900 chr6B 91.951 410 16 7 3844 4239 485304456 485304862 6.170000e-155 558.0
7 TraesCS6A01G255900 chr6B 92.857 126 5 3 6908 7033 485306179 485306300 5.610000e-41 180.0
8 TraesCS6A01G255900 chr6D 92.539 2895 103 33 15 2859 335340712 335337881 0.000000e+00 4045.0
9 TraesCS6A01G255900 chr6D 91.006 1401 76 25 2855 4241 335337814 335336450 0.000000e+00 1844.0
10 TraesCS6A01G255900 chr6D 95.080 1057 39 5 5558 6613 335336461 335335417 0.000000e+00 1652.0
11 TraesCS6A01G255900 chr1A 98.761 1291 11 2 4230 5520 422677861 422679146 0.000000e+00 2290.0
12 TraesCS6A01G255900 chr1A 88.393 112 13 0 4504 4615 422678258 422678369 1.230000e-27 135.0
13 TraesCS6A01G255900 chr1A 88.288 111 13 0 4627 4737 422678135 422678245 4.430000e-27 134.0
14 TraesCS6A01G255900 chr4B 96.279 1317 34 3 4265 5571 344302282 344303593 0.000000e+00 2146.0
15 TraesCS6A01G255900 chr4B 88.288 111 13 0 4627 4737 344302521 344302631 4.430000e-27 134.0
16 TraesCS6A01G255900 chrUn 87.130 878 68 22 4277 5140 117155299 117156145 0.000000e+00 953.0
17 TraesCS6A01G255900 chrUn 92.121 165 13 0 5191 5355 117156480 117156644 4.250000e-57 233.0
18 TraesCS6A01G255900 chrUn 94.595 74 1 3 6695 6767 17536259 17536330 2.080000e-20 111.0
19 TraesCS6A01G255900 chr2D 87.135 342 42 2 1343 1683 510615423 510615763 3.080000e-103 387.0
20 TraesCS6A01G255900 chr2D 79.924 264 53 0 2119 2382 510616328 510616591 2.000000e-45 195.0
21 TraesCS6A01G255900 chr2D 94.595 74 1 3 6695 6767 206238537 206238608 2.080000e-20 111.0
22 TraesCS6A01G255900 chr2B 87.059 340 42 2 1343 1681 600000030 600000368 3.990000e-102 383.0
23 TraesCS6A01G255900 chr2B 79.848 263 53 0 2120 2382 600000922 600001184 7.210000e-45 193.0
24 TraesCS6A01G255900 chr2B 91.176 68 3 3 6696 6761 784978514 784978580 9.730000e-14 89.8
25 TraesCS6A01G255900 chr2A 87.425 334 40 2 1349 1681 654364940 654365272 3.990000e-102 383.0
26 TraesCS6A01G255900 chr2A 79.545 264 54 0 2119 2382 654365836 654366099 9.330000e-44 189.0
27 TraesCS6A01G255900 chr2A 93.750 80 5 0 6678 6757 15843769 15843690 3.450000e-23 121.0
28 TraesCS6A01G255900 chr2A 93.750 80 5 0 6678 6757 15844702 15844623 3.450000e-23 121.0
29 TraesCS6A01G255900 chr2A 93.333 75 2 3 6695 6767 277141797 277141724 2.690000e-19 108.0
30 TraesCS6A01G255900 chr1B 93.750 80 5 0 6678 6757 38582245 38582166 3.450000e-23 121.0
31 TraesCS6A01G255900 chr1D 94.595 74 4 0 6682 6755 22507306 22507233 1.610000e-21 115.0
32 TraesCS6A01G255900 chr5D 93.333 60 2 2 6695 6753 222427172 222427230 3.500000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G255900 chr6A 474981426 474988468 7042 True 13007.000000 13007 100.0000 1 7043 1 chr6A.!!$R1 7042
1 TraesCS6A01G255900 chr6B 485300646 485306300 5654 False 1920.250000 5221 93.1570 2 7033 4 chr6B.!!$F2 7031
2 TraesCS6A01G255900 chr6B 502474028 502475241 1213 False 1358.000000 1358 87.1050 4304 5513 1 chr6B.!!$F1 1209
3 TraesCS6A01G255900 chr6D 335335417 335340712 5295 True 2513.666667 4045 92.8750 15 6613 3 chr6D.!!$R1 6598
4 TraesCS6A01G255900 chr1A 422677861 422679146 1285 False 853.000000 2290 91.8140 4230 5520 3 chr1A.!!$F1 1290
5 TraesCS6A01G255900 chr4B 344302282 344303593 1311 False 1140.000000 2146 92.2835 4265 5571 2 chr4B.!!$F1 1306
6 TraesCS6A01G255900 chrUn 117155299 117156644 1345 False 593.000000 953 89.6255 4277 5355 2 chrUn.!!$F2 1078
7 TraesCS6A01G255900 chr2D 510615423 510616591 1168 False 291.000000 387 83.5295 1343 2382 2 chr2D.!!$F2 1039
8 TraesCS6A01G255900 chr2B 600000030 600001184 1154 False 288.000000 383 83.4535 1343 2382 2 chr2B.!!$F2 1039
9 TraesCS6A01G255900 chr2A 654364940 654366099 1159 False 286.000000 383 83.4850 1349 2382 2 chr2A.!!$F1 1033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 330 0.321653 ACAGACCTTCGCATTCCCAC 60.322 55.000 0.00 0.00 0.00 4.61 F
1230 1285 0.105964 TAACCACGCAGAGCACTGTT 59.894 50.000 12.89 1.48 45.04 3.16 F
1231 1286 0.105964 AACCACGCAGAGCACTGTTA 59.894 50.000 12.89 0.00 45.04 2.41 F
2144 2381 0.250513 GGAGAAGGAACGCCATGACT 59.749 55.000 0.00 0.00 36.29 3.41 F
3501 3826 0.187117 TTCCCAGTGCCATCCAAACA 59.813 50.000 0.00 0.00 0.00 2.83 F
3807 4132 0.171455 AGAGAACCGCACGAGACATC 59.829 55.000 0.00 0.00 0.00 3.06 F
4199 4599 0.807667 CGGCCATGCTAGTGTCTCAC 60.808 60.000 2.24 0.00 34.10 3.51 F
4879 5327 2.049894 TCGTTGCGAGCGCTAACA 60.050 55.556 11.50 9.20 42.51 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2169 0.036294 AGAAGCTTAACGGAGTGGGC 60.036 55.000 0.00 0.0 45.00 5.36 R
2702 2939 0.905357 CCACTAGTGCAGCCCTAACT 59.095 55.000 17.86 0.0 0.00 2.24 R
2960 3275 1.856539 AAGGATGCACAGAGGTGGGG 61.857 60.000 0.00 0.0 45.38 4.96 R
3601 3926 0.037512 CTGAGTGGCCTGACTGAGTG 60.038 60.000 3.32 0.0 0.00 3.51 R
5062 5534 5.665812 TGGGCAGGAGTATAGTAATTGAAGT 59.334 40.000 0.00 0.0 0.00 3.01 R
5063 5535 6.174720 TGGGCAGGAGTATAGTAATTGAAG 57.825 41.667 0.00 0.0 0.00 3.02 R
5905 6671 0.035056 AAGGCCGATTTCACCCTCAG 60.035 55.000 0.00 0.0 0.00 3.35 R
6675 7445 0.172578 CAACAGTGTCCGAGCCGATA 59.827 55.000 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.788690 ACGTCTTACTAGATCGATGCATG 58.211 43.478 2.46 0.00 32.74 4.06
62 63 3.605916 CGTCTTACTAGATCGATGCATGC 59.394 47.826 11.82 11.82 31.86 4.06
63 64 4.614764 CGTCTTACTAGATCGATGCATGCT 60.615 45.833 20.33 4.11 31.86 3.79
108 115 5.627367 CCAAAAGCGATCGATAACAAAAACA 59.373 36.000 21.57 0.00 0.00 2.83
159 166 0.888736 CAATTCTGGTGTGCCGGTGA 60.889 55.000 1.90 0.00 41.89 4.02
242 252 6.386927 TCTTATCCACAGAGTTTACATGGGAT 59.613 38.462 0.00 0.00 37.62 3.85
243 253 4.487714 TCCACAGAGTTTACATGGGATC 57.512 45.455 0.00 0.00 0.00 3.36
245 255 3.118775 CCACAGAGTTTACATGGGATCGA 60.119 47.826 0.00 0.00 0.00 3.59
266 276 2.494073 ACAGCCTAGCTAGTCTTGACAC 59.506 50.000 19.31 0.00 36.40 3.67
278 288 4.360563 AGTCTTGACACTTCACAAGTACG 58.639 43.478 0.00 0.00 40.46 3.67
319 329 0.400213 AACAGACCTTCGCATTCCCA 59.600 50.000 0.00 0.00 0.00 4.37
320 330 0.321653 ACAGACCTTCGCATTCCCAC 60.322 55.000 0.00 0.00 0.00 4.61
321 331 1.026718 CAGACCTTCGCATTCCCACC 61.027 60.000 0.00 0.00 0.00 4.61
322 332 2.046314 ACCTTCGCATTCCCACCG 60.046 61.111 0.00 0.00 0.00 4.94
323 333 2.267642 CCTTCGCATTCCCACCGA 59.732 61.111 0.00 0.00 0.00 4.69
341 351 1.463444 CGAACCGAACTGTTTGATCCC 59.537 52.381 9.37 0.00 32.32 3.85
361 371 3.491964 CCCGTCGAACTAATTGCCATCTA 60.492 47.826 0.00 0.00 0.00 1.98
393 432 7.519927 ACCTATAACTACTGTCCAACCAAAAA 58.480 34.615 0.00 0.00 0.00 1.94
421 460 2.251642 GGAAGACACGGCCACACAC 61.252 63.158 2.24 0.00 0.00 3.82
430 469 1.901464 GGCCACACACGGACCATTT 60.901 57.895 0.00 0.00 0.00 2.32
431 470 1.579429 GCCACACACGGACCATTTC 59.421 57.895 0.00 0.00 0.00 2.17
432 471 0.889186 GCCACACACGGACCATTTCT 60.889 55.000 0.00 0.00 0.00 2.52
450 489 9.084533 ACCATTTCTTTTAAACCTAAGTGCATA 57.915 29.630 0.00 0.00 0.00 3.14
451 490 9.921637 CCATTTCTTTTAAACCTAAGTGCATAA 57.078 29.630 0.00 0.00 0.00 1.90
571 619 2.941064 CTGAATGATGCTCACGGACAAT 59.059 45.455 0.00 0.00 0.00 2.71
574 622 0.324614 TGATGCTCACGGACAATGGT 59.675 50.000 0.00 0.00 0.00 3.55
575 623 1.009829 GATGCTCACGGACAATGGTC 58.990 55.000 0.00 0.00 43.55 4.02
576 624 0.740868 ATGCTCACGGACAATGGTCG 60.741 55.000 0.00 0.00 45.28 4.79
577 625 2.100631 GCTCACGGACAATGGTCGG 61.101 63.158 6.26 6.26 45.28 4.79
670 718 0.711670 CGTCGGAACATAACACCACG 59.288 55.000 0.00 0.00 0.00 4.94
767 816 2.147150 GCGGCAATAATTCTCCTCCTC 58.853 52.381 0.00 0.00 0.00 3.71
832 881 3.434641 CCGACGAGACCGCTATATAAAGA 59.565 47.826 0.00 0.00 39.95 2.52
835 884 5.063691 CGACGAGACCGCTATATAAAGAGAT 59.936 44.000 0.00 0.00 39.95 2.75
838 887 5.392057 CGAGACCGCTATATAAAGAGATGCA 60.392 44.000 0.00 0.00 0.00 3.96
861 910 1.078426 CCCAACTTAGCTCCCCGTG 60.078 63.158 0.00 0.00 0.00 4.94
899 948 1.468985 TGCGCTAGCTTCTCTTCTCT 58.531 50.000 13.93 0.00 45.42 3.10
908 957 2.099098 GCTTCTCTTCTCTCTTCCCTCG 59.901 54.545 0.00 0.00 0.00 4.63
944 999 6.876257 CCATTGCCCTAGACTTGATCTAATAC 59.124 42.308 0.00 0.00 39.52 1.89
985 1040 6.110707 AGTACTAGCTGACAGTCTTCTAGTC 58.889 44.000 25.42 19.63 40.09 2.59
989 1044 3.891977 AGCTGACAGTCTTCTAGTCACAA 59.108 43.478 3.99 0.00 37.36 3.33
994 1049 4.372656 ACAGTCTTCTAGTCACAACTTGC 58.627 43.478 0.00 0.00 36.92 4.01
999 1054 3.013276 TCTAGTCACAACTTGCAGTCG 57.987 47.619 0.00 0.00 36.92 4.18
1054 1109 1.138859 CCGTAGCATTCATCCTGTGGA 59.861 52.381 0.00 0.00 35.55 4.02
1146 1201 0.322975 AGACCATGCAGTTCTTCGCT 59.677 50.000 0.00 0.00 0.00 4.93
1164 1219 1.896465 GCTCCTAATCCTACCTGCGAT 59.104 52.381 0.00 0.00 0.00 4.58
1203 1258 1.299976 CAGGGTGAACAGGTAGGGC 59.700 63.158 0.00 0.00 0.00 5.19
1205 1260 0.770557 AGGGTGAACAGGTAGGGCAA 60.771 55.000 0.00 0.00 0.00 4.52
1209 1264 3.279434 GGTGAACAGGTAGGGCAATTAG 58.721 50.000 0.00 0.00 0.00 1.73
1222 1277 2.006888 GCAATTAGCTAACCACGCAGA 58.993 47.619 8.70 0.00 41.15 4.26
1223 1278 2.030946 GCAATTAGCTAACCACGCAGAG 59.969 50.000 8.70 0.00 41.15 3.35
1225 1280 0.606096 TTAGCTAACCACGCAGAGCA 59.394 50.000 0.86 0.00 37.40 4.26
1226 1281 0.108804 TAGCTAACCACGCAGAGCAC 60.109 55.000 0.00 0.00 37.40 4.40
1227 1282 1.374758 GCTAACCACGCAGAGCACT 60.375 57.895 0.00 0.00 34.96 4.40
1228 1283 1.630244 GCTAACCACGCAGAGCACTG 61.630 60.000 6.80 6.80 45.91 3.66
1229 1284 0.319900 CTAACCACGCAGAGCACTGT 60.320 55.000 12.89 0.00 45.04 3.55
1230 1285 0.105964 TAACCACGCAGAGCACTGTT 59.894 50.000 12.89 1.48 45.04 3.16
1231 1286 0.105964 AACCACGCAGAGCACTGTTA 59.894 50.000 12.89 0.00 45.04 2.41
1232 1287 0.321671 ACCACGCAGAGCACTGTTAT 59.678 50.000 12.89 0.00 45.04 1.89
1233 1288 1.548719 ACCACGCAGAGCACTGTTATA 59.451 47.619 12.89 0.00 45.04 0.98
1248 1303 5.986741 CACTGTTATATTATGCACCACGGTA 59.013 40.000 0.00 0.00 0.00 4.02
1290 1345 6.108687 TCAGTTCATGATCACATTGGACTAC 58.891 40.000 8.16 0.00 34.15 2.73
1443 1499 2.883828 CGTGTTCCAGCAGGAGGGT 61.884 63.158 0.00 0.00 46.74 4.34
1744 1804 7.222805 TGCGTTTAACATCATCAGATTAGAGAC 59.777 37.037 0.00 0.00 30.20 3.36
2021 2137 1.661178 GCACATGCGTGTCAAGTCAAG 60.661 52.381 9.07 0.00 45.50 3.02
2049 2165 1.741770 GTCAAACGGCGGCTCTCAT 60.742 57.895 13.24 0.00 0.00 2.90
2053 2169 2.859273 AAACGGCGGCTCTCATGGAG 62.859 60.000 13.24 6.79 44.49 3.86
2144 2381 0.250513 GGAGAAGGAACGCCATGACT 59.749 55.000 0.00 0.00 36.29 3.41
2264 2501 2.183555 CTTACCGAGACCGTGGCC 59.816 66.667 0.00 0.00 0.00 5.36
2668 2905 6.698359 GCAAATTGCACGGTTAAGAAATTA 57.302 33.333 13.73 0.00 44.26 1.40
2669 2906 7.111353 GCAAATTGCACGGTTAAGAAATTAA 57.889 32.000 13.73 0.00 44.26 1.40
2670 2907 7.738345 GCAAATTGCACGGTTAAGAAATTAAT 58.262 30.769 13.73 0.00 44.26 1.40
2671 2908 8.227119 GCAAATTGCACGGTTAAGAAATTAATT 58.773 29.630 13.73 0.00 44.26 1.40
2702 2939 5.555966 TGTAACAGTGACTAATGAATGGCA 58.444 37.500 0.00 0.00 0.00 4.92
2720 2957 2.015736 CAGTTAGGGCTGCACTAGTG 57.984 55.000 18.93 18.93 0.00 2.74
2721 2958 0.905357 AGTTAGGGCTGCACTAGTGG 59.095 55.000 23.95 9.71 0.00 4.00
2722 2959 0.744771 GTTAGGGCTGCACTAGTGGC 60.745 60.000 23.95 18.51 0.00 5.01
2723 2960 1.198094 TTAGGGCTGCACTAGTGGCA 61.198 55.000 23.95 19.36 39.32 4.92
2724 2961 1.198094 TAGGGCTGCACTAGTGGCAA 61.198 55.000 23.95 6.92 41.39 4.52
2725 2962 1.603455 GGGCTGCACTAGTGGCAAA 60.603 57.895 23.95 1.82 41.39 3.68
2726 2963 1.178534 GGGCTGCACTAGTGGCAAAA 61.179 55.000 23.95 1.18 41.39 2.44
2727 2964 0.890683 GGCTGCACTAGTGGCAAAAT 59.109 50.000 23.95 0.00 41.39 1.82
2728 2965 2.091541 GGCTGCACTAGTGGCAAAATA 58.908 47.619 23.95 0.52 41.39 1.40
2729 2966 2.689983 GGCTGCACTAGTGGCAAAATAT 59.310 45.455 23.95 0.00 41.39 1.28
2730 2967 3.243201 GGCTGCACTAGTGGCAAAATATC 60.243 47.826 23.95 4.83 41.39 1.63
2731 2968 3.629398 GCTGCACTAGTGGCAAAATATCT 59.371 43.478 23.95 0.00 41.39 1.98
2732 2969 4.096984 GCTGCACTAGTGGCAAAATATCTT 59.903 41.667 23.95 0.00 41.39 2.40
2733 2970 5.731686 GCTGCACTAGTGGCAAAATATCTTC 60.732 44.000 23.95 3.42 41.39 2.87
2734 2971 5.252547 TGCACTAGTGGCAAAATATCTTCA 58.747 37.500 23.95 6.00 38.54 3.02
2735 2972 5.709631 TGCACTAGTGGCAAAATATCTTCAA 59.290 36.000 23.95 0.00 38.54 2.69
2736 2973 6.208402 TGCACTAGTGGCAAAATATCTTCAAA 59.792 34.615 23.95 0.00 38.54 2.69
2737 2974 7.090173 GCACTAGTGGCAAAATATCTTCAAAA 58.910 34.615 23.95 0.00 0.00 2.44
2738 2975 7.598493 GCACTAGTGGCAAAATATCTTCAAAAA 59.402 33.333 23.95 0.00 0.00 1.94
2852 3090 7.119992 GCATAGTCCACGAGAGAGAAGATATAA 59.880 40.741 0.00 0.00 0.00 0.98
2960 3275 3.409026 AGGACTGATGAAACTGACACC 57.591 47.619 0.00 0.00 0.00 4.16
3041 3356 2.329614 CGTGCCCGGGATTTTTCGT 61.330 57.895 29.31 0.00 0.00 3.85
3138 3456 1.974265 TTTTGGTTCATGGCGTGAGA 58.026 45.000 9.70 0.00 38.29 3.27
3250 3568 4.202050 GCAGTGCATCTAAATCCCGAAATT 60.202 41.667 11.09 0.00 0.00 1.82
3341 3659 5.796424 AACTGAAACCAGCTCATTTCATT 57.204 34.783 17.96 12.15 42.38 2.57
3355 3673 5.460646 TCATTTCATTTTGGAAGCGAACTC 58.539 37.500 0.00 0.00 0.00 3.01
3359 3677 2.748461 TTTTGGAAGCGAACTCAACG 57.252 45.000 0.00 0.00 0.00 4.10
3360 3678 1.658994 TTTGGAAGCGAACTCAACGT 58.341 45.000 0.00 0.00 0.00 3.99
3385 3705 2.202388 CGGCGCACAAGCTGAATG 60.202 61.111 10.83 0.00 45.94 2.67
3397 3717 1.003118 AGCTGAATGTAACTTCCGGCA 59.997 47.619 0.00 0.00 0.00 5.69
3398 3718 2.017049 GCTGAATGTAACTTCCGGCAT 58.983 47.619 0.00 0.00 0.00 4.40
3399 3719 2.223340 GCTGAATGTAACTTCCGGCATG 60.223 50.000 0.00 0.00 0.00 4.06
3400 3720 2.355756 CTGAATGTAACTTCCGGCATGG 59.644 50.000 0.00 0.00 40.09 3.66
3401 3721 1.676006 GAATGTAACTTCCGGCATGGG 59.324 52.381 0.00 0.00 38.76 4.00
3402 3722 0.751643 ATGTAACTTCCGGCATGGGC 60.752 55.000 0.00 0.00 38.76 5.36
3437 3757 2.262915 CGGAGTGTCTCTGTGGGC 59.737 66.667 0.00 0.00 32.64 5.36
3438 3758 2.574018 CGGAGTGTCTCTGTGGGCA 61.574 63.158 0.00 0.00 32.64 5.36
3440 3760 1.375268 GAGTGTCTCTGTGGGCAGC 60.375 63.158 0.00 0.00 42.29 5.25
3442 3762 2.917227 TGTCTCTGTGGGCAGCGA 60.917 61.111 0.00 0.00 42.29 4.93
3443 3763 2.125753 GTCTCTGTGGGCAGCGAG 60.126 66.667 0.00 0.00 42.29 5.03
3444 3764 2.601666 TCTCTGTGGGCAGCGAGT 60.602 61.111 0.00 0.00 42.29 4.18
3470 3790 2.609002 GCTTCAGGGTTTTGTTTGCTTG 59.391 45.455 0.00 0.00 0.00 4.01
3495 3820 0.967380 CCAAGGTTCCCAGTGCCATC 60.967 60.000 0.00 0.00 0.00 3.51
3501 3826 0.187117 TTCCCAGTGCCATCCAAACA 59.813 50.000 0.00 0.00 0.00 2.83
3523 3848 9.899661 AAACAACTACAGCTATAAATCATACCA 57.100 29.630 0.00 0.00 0.00 3.25
3537 3862 9.920946 ATAAATCATACCATAAGTTTGTGGAGT 57.079 29.630 13.68 0.45 41.46 3.85
3538 3863 7.865706 AATCATACCATAAGTTTGTGGAGTC 57.134 36.000 13.68 0.00 41.46 3.36
3539 3864 6.367374 TCATACCATAAGTTTGTGGAGTCA 57.633 37.500 13.68 0.00 41.46 3.41
3540 3865 6.957631 TCATACCATAAGTTTGTGGAGTCAT 58.042 36.000 13.68 0.61 41.46 3.06
3541 3866 8.084985 TCATACCATAAGTTTGTGGAGTCATA 57.915 34.615 13.68 0.00 41.46 2.15
3542 3867 7.985184 TCATACCATAAGTTTGTGGAGTCATAC 59.015 37.037 13.68 0.00 41.46 2.39
3543 3868 6.121776 ACCATAAGTTTGTGGAGTCATACA 57.878 37.500 13.68 0.00 41.46 2.29
3566 3891 8.594881 ACATCTAATCAAAATAAGCTACTCCG 57.405 34.615 0.00 0.00 0.00 4.63
3567 3892 8.204836 ACATCTAATCAAAATAAGCTACTCCGT 58.795 33.333 0.00 0.00 0.00 4.69
3568 3893 9.692749 CATCTAATCAAAATAAGCTACTCCGTA 57.307 33.333 0.00 0.00 0.00 4.02
3570 3895 9.909644 TCTAATCAAAATAAGCTACTCCGTATC 57.090 33.333 0.00 0.00 0.00 2.24
3571 3896 9.692749 CTAATCAAAATAAGCTACTCCGTATCA 57.307 33.333 0.00 0.00 0.00 2.15
3601 3926 8.980143 TTTTATTAAAGGCAATAGCAACAGTC 57.020 30.769 0.00 0.00 44.61 3.51
3602 3927 7.695480 TTATTAAAGGCAATAGCAACAGTCA 57.305 32.000 0.00 0.00 44.61 3.41
3603 3928 3.923017 AAAGGCAATAGCAACAGTCAC 57.077 42.857 0.00 0.00 44.61 3.67
3604 3929 2.867109 AGGCAATAGCAACAGTCACT 57.133 45.000 0.00 0.00 44.61 3.41
3605 3930 2.704572 AGGCAATAGCAACAGTCACTC 58.295 47.619 0.00 0.00 44.61 3.51
3606 3931 2.038952 AGGCAATAGCAACAGTCACTCA 59.961 45.455 0.00 0.00 44.61 3.41
3607 3932 2.417933 GGCAATAGCAACAGTCACTCAG 59.582 50.000 0.00 0.00 44.61 3.35
3637 3962 1.001293 TCAGTCAGTGACTCCATGCAC 59.999 52.381 23.08 0.00 41.37 4.57
3653 3978 1.000618 TGCACTGCTTGAGTCTCTGAG 59.999 52.381 1.98 0.00 29.75 3.35
3669 3994 3.808728 TCTGAGTTTCTCCCAAGTTGTG 58.191 45.455 1.45 0.00 0.00 3.33
3686 4011 6.877611 AGTTGTGACTTATTACCAACTTGG 57.122 37.500 6.24 6.24 36.71 3.61
3737 4062 7.734865 TGGAAGGATATATTAGAAGAGGAAGCA 59.265 37.037 0.00 0.00 0.00 3.91
3777 4102 6.001449 AGTGGTTATCTAATTAGCCAGCAA 57.999 37.500 7.67 0.00 33.70 3.91
3807 4132 0.171455 AGAGAACCGCACGAGACATC 59.829 55.000 0.00 0.00 0.00 3.06
3894 4277 8.385898 ACTAGCTAGTAATGTACTCTAAGCAG 57.614 38.462 24.97 0.00 39.30 4.24
3902 4285 2.225293 TGTACTCTAAGCAGGTCTGGGT 60.225 50.000 0.00 0.00 0.00 4.51
3907 4295 3.097614 TCTAAGCAGGTCTGGGTTCTAC 58.902 50.000 0.00 0.00 0.00 2.59
3968 4357 8.190784 GTGCTATTTCAATACCTGCTTATTTGT 58.809 33.333 0.00 0.00 0.00 2.83
4027 4418 3.903530 AGGGGATGAACCTGAAAGTTT 57.096 42.857 0.00 0.00 36.85 2.66
4033 4424 5.048013 GGGATGAACCTGAAAGTTTGGTAAG 60.048 44.000 0.00 0.00 38.98 2.34
4036 4427 6.693315 TGAACCTGAAAGTTTGGTAAGAAG 57.307 37.500 0.00 0.00 33.17 2.85
4039 4430 6.944234 ACCTGAAAGTTTGGTAAGAAGAAG 57.056 37.500 0.00 0.00 31.50 2.85
4040 4431 5.299531 ACCTGAAAGTTTGGTAAGAAGAAGC 59.700 40.000 0.00 0.00 31.50 3.86
4081 4472 2.603560 GCTACGTGATTAGTCCACTTGC 59.396 50.000 0.00 0.00 32.64 4.01
4092 4483 4.306471 CACTTGCGCGCGGTCAAA 62.306 61.111 33.06 13.79 0.00 2.69
4136 4527 4.506654 CCGTCAAATGATACTTAACCCTCG 59.493 45.833 0.00 0.00 0.00 4.63
4199 4599 0.807667 CGGCCATGCTAGTGTCTCAC 60.808 60.000 2.24 0.00 34.10 3.51
4879 5327 2.049894 TCGTTGCGAGCGCTAACA 60.050 55.556 11.50 9.20 42.51 2.41
5896 6662 4.996758 TCACATATGGACACTGTTTCACTG 59.003 41.667 7.80 0.00 0.00 3.66
5897 6663 4.996758 CACATATGGACACTGTTTCACTGA 59.003 41.667 7.80 0.00 0.00 3.41
5905 6671 5.220681 GGACACTGTTTCACTGAAAGAACTC 60.221 44.000 4.36 0.00 37.43 3.01
5909 6675 5.814705 ACTGTTTCACTGAAAGAACTCTGAG 59.185 40.000 4.36 2.45 37.43 3.35
5937 6703 3.053831 TCGGCCTTTTCTAACCTTGAG 57.946 47.619 0.00 0.00 0.00 3.02
6069 6835 0.880278 TGTTTGTCGGCTCAGTCTGC 60.880 55.000 0.00 0.00 0.00 4.26
6231 6997 7.676683 ATATTAGTCCTCTAGTCCAAGCAAA 57.323 36.000 0.00 0.00 0.00 3.68
6372 7139 3.118920 ACACAACCCAAGCAAAAGGTAAC 60.119 43.478 0.00 0.00 32.21 2.50
6406 7173 4.956085 TCCCATGATGGTAATTAGTCGTG 58.044 43.478 11.09 7.30 35.17 4.35
6415 7182 3.063452 GGTAATTAGTCGTGCACATGGTG 59.937 47.826 18.64 0.00 36.51 4.17
6438 7205 6.687531 GTGTACGAGTCTACTCATATGTTGTG 59.312 42.308 10.55 0.00 43.00 3.33
6555 7324 4.811158 TTAGAAAACGCTGAATACGACG 57.189 40.909 0.00 0.00 0.00 5.12
6609 7379 9.857656 TCCAAGCTCTTCTATTTCATTATCATT 57.142 29.630 0.00 0.00 0.00 2.57
6610 7380 9.894783 CCAAGCTCTTCTATTTCATTATCATTG 57.105 33.333 0.00 0.00 0.00 2.82
6631 7401 6.877611 TTGAATTCCTGTTCAAGTAAGGTC 57.122 37.500 2.27 0.00 41.70 3.85
6632 7402 6.187727 TGAATTCCTGTTCAAGTAAGGTCT 57.812 37.500 2.27 0.00 35.31 3.85
6633 7403 7.311092 TGAATTCCTGTTCAAGTAAGGTCTA 57.689 36.000 2.27 0.00 35.31 2.59
6634 7404 7.918076 TGAATTCCTGTTCAAGTAAGGTCTAT 58.082 34.615 2.27 0.00 35.31 1.98
6635 7405 9.042450 TGAATTCCTGTTCAAGTAAGGTCTATA 57.958 33.333 2.27 0.00 35.31 1.31
6690 7460 8.865420 ATATATATATTATCGGCTCGGACACT 57.135 34.615 0.00 0.00 0.00 3.55
6691 7461 3.577649 ATATTATCGGCTCGGACACTG 57.422 47.619 0.00 0.00 0.00 3.66
6692 7462 1.112113 ATTATCGGCTCGGACACTGT 58.888 50.000 0.00 0.00 0.00 3.55
6693 7463 0.892755 TTATCGGCTCGGACACTGTT 59.107 50.000 0.00 0.00 0.00 3.16
6694 7464 0.172578 TATCGGCTCGGACACTGTTG 59.827 55.000 0.00 0.00 0.00 3.33
6695 7465 1.816863 ATCGGCTCGGACACTGTTGT 61.817 55.000 0.00 0.00 39.32 3.32
6707 7477 3.733337 ACACTGTTGTCTCACATTCTCC 58.267 45.455 0.00 0.00 0.00 3.71
6708 7478 3.389329 ACACTGTTGTCTCACATTCTCCT 59.611 43.478 0.00 0.00 0.00 3.69
6709 7479 3.993081 CACTGTTGTCTCACATTCTCCTC 59.007 47.826 0.00 0.00 0.00 3.71
6710 7480 3.900601 ACTGTTGTCTCACATTCTCCTCT 59.099 43.478 0.00 0.00 0.00 3.69
6711 7481 4.346418 ACTGTTGTCTCACATTCTCCTCTT 59.654 41.667 0.00 0.00 0.00 2.85
6712 7482 5.163258 ACTGTTGTCTCACATTCTCCTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
6713 7483 6.042093 ACTGTTGTCTCACATTCTCCTCTTTA 59.958 38.462 0.00 0.00 0.00 1.85
6714 7484 7.009179 TGTTGTCTCACATTCTCCTCTTTAT 57.991 36.000 0.00 0.00 0.00 1.40
6715 7485 7.453393 TGTTGTCTCACATTCTCCTCTTTATT 58.547 34.615 0.00 0.00 0.00 1.40
6716 7486 8.593679 TGTTGTCTCACATTCTCCTCTTTATTA 58.406 33.333 0.00 0.00 0.00 0.98
6717 7487 9.436957 GTTGTCTCACATTCTCCTCTTTATTAA 57.563 33.333 0.00 0.00 0.00 1.40
6730 7500 9.343539 CTCCTCTTTATTAAAAATCAGTAGGGG 57.656 37.037 0.00 0.00 0.00 4.79
6731 7501 7.778382 TCCTCTTTATTAAAAATCAGTAGGGGC 59.222 37.037 0.00 0.00 0.00 5.80
6732 7502 7.780271 CCTCTTTATTAAAAATCAGTAGGGGCT 59.220 37.037 0.00 0.00 0.00 5.19
6733 7503 9.190317 CTCTTTATTAAAAATCAGTAGGGGCTT 57.810 33.333 0.00 0.00 0.00 4.35
6734 7504 9.185680 TCTTTATTAAAAATCAGTAGGGGCTTC 57.814 33.333 0.00 0.00 0.00 3.86
6735 7505 9.190317 CTTTATTAAAAATCAGTAGGGGCTTCT 57.810 33.333 0.00 0.00 0.00 2.85
6736 7506 8.747538 TTATTAAAAATCAGTAGGGGCTTCTC 57.252 34.615 0.00 0.00 0.00 2.87
6737 7507 3.653835 AAAATCAGTAGGGGCTTCTCC 57.346 47.619 0.00 0.00 0.00 3.71
6746 7516 3.002371 GGCTTCTCCCCCTTCTGG 58.998 66.667 0.00 0.00 0.00 3.86
6747 7517 1.925972 GGCTTCTCCCCCTTCTGGT 60.926 63.158 0.00 0.00 0.00 4.00
6748 7518 1.604915 GCTTCTCCCCCTTCTGGTC 59.395 63.158 0.00 0.00 0.00 4.02
6749 7519 0.912006 GCTTCTCCCCCTTCTGGTCT 60.912 60.000 0.00 0.00 0.00 3.85
6750 7520 1.622725 GCTTCTCCCCCTTCTGGTCTA 60.623 57.143 0.00 0.00 0.00 2.59
6751 7521 2.393646 CTTCTCCCCCTTCTGGTCTAG 58.606 57.143 0.00 0.00 0.00 2.43
6752 7522 1.394532 TCTCCCCCTTCTGGTCTAGT 58.605 55.000 0.00 0.00 0.00 2.57
6753 7523 1.722851 TCTCCCCCTTCTGGTCTAGTT 59.277 52.381 0.00 0.00 0.00 2.24
6754 7524 2.113777 TCTCCCCCTTCTGGTCTAGTTT 59.886 50.000 0.00 0.00 0.00 2.66
6755 7525 2.913617 CTCCCCCTTCTGGTCTAGTTTT 59.086 50.000 0.00 0.00 0.00 2.43
6756 7526 3.330998 CTCCCCCTTCTGGTCTAGTTTTT 59.669 47.826 0.00 0.00 0.00 1.94
6868 7638 7.707774 ATAGAAAACGAAACAAAACAATGGG 57.292 32.000 0.00 0.00 0.00 4.00
6869 7639 4.873259 AGAAAACGAAACAAAACAATGGGG 59.127 37.500 0.00 0.00 0.00 4.96
6870 7640 3.897141 AACGAAACAAAACAATGGGGT 57.103 38.095 0.00 0.00 0.00 4.95
6871 7641 3.897141 ACGAAACAAAACAATGGGGTT 57.103 38.095 0.00 0.00 0.00 4.11
6872 7642 4.209307 ACGAAACAAAACAATGGGGTTT 57.791 36.364 0.00 0.00 42.49 3.27
6873 7643 3.935828 ACGAAACAAAACAATGGGGTTTG 59.064 39.130 3.47 3.47 40.64 2.93
6874 7644 3.311048 CGAAACAAAACAATGGGGTTTGG 59.689 43.478 9.37 0.16 40.64 3.28
6875 7645 3.289407 AACAAAACAATGGGGTTTGGG 57.711 42.857 9.37 0.00 40.64 4.12
6876 7646 1.492599 ACAAAACAATGGGGTTTGGGG 59.507 47.619 9.37 0.00 40.64 4.96
6877 7647 1.144691 AAAACAATGGGGTTTGGGGG 58.855 50.000 0.00 0.00 40.64 5.40
6898 7668 2.669300 GGGGGACTCTTCGTACTTTC 57.331 55.000 0.00 0.00 0.00 2.62
6899 7669 2.177734 GGGGGACTCTTCGTACTTTCT 58.822 52.381 0.00 0.00 0.00 2.52
6900 7670 2.566279 GGGGGACTCTTCGTACTTTCTT 59.434 50.000 0.00 0.00 0.00 2.52
6901 7671 3.007723 GGGGGACTCTTCGTACTTTCTTT 59.992 47.826 0.00 0.00 0.00 2.52
6902 7672 4.244066 GGGGACTCTTCGTACTTTCTTTC 58.756 47.826 0.00 0.00 0.00 2.62
6903 7673 4.244066 GGGACTCTTCGTACTTTCTTTCC 58.756 47.826 0.00 0.00 0.00 3.13
6904 7674 3.919197 GGACTCTTCGTACTTTCTTTCCG 59.081 47.826 0.00 0.00 0.00 4.30
6905 7675 3.315418 ACTCTTCGTACTTTCTTTCCGC 58.685 45.455 0.00 0.00 0.00 5.54
6906 7676 3.243636 ACTCTTCGTACTTTCTTTCCGCA 60.244 43.478 0.00 0.00 0.00 5.69
6909 7813 2.400399 TCGTACTTTCTTTCCGCACTG 58.600 47.619 0.00 0.00 0.00 3.66
6923 7827 3.123804 CCGCACTGTTATGGATAGTGAC 58.876 50.000 7.71 0.00 46.92 3.67
6927 7831 5.345702 GCACTGTTATGGATAGTGACGTAA 58.654 41.667 7.71 0.00 46.92 3.18
6934 7838 9.093970 TGTTATGGATAGTGACGTAATGAAAAG 57.906 33.333 0.00 0.00 0.00 2.27
6939 7843 9.058174 TGGATAGTGACGTAATGAAAAGAAAAA 57.942 29.630 0.00 0.00 0.00 1.94
6940 7844 9.543018 GGATAGTGACGTAATGAAAAGAAAAAG 57.457 33.333 0.00 0.00 0.00 2.27
6948 7852 9.673454 ACGTAATGAAAAGAAAAAGGATACAAC 57.327 29.630 0.00 0.00 41.41 3.32
6958 7862 7.280356 AGAAAAAGGATACAACGTAGGCATAT 58.720 34.615 0.00 0.00 41.41 1.78
6959 7863 7.773690 AGAAAAAGGATACAACGTAGGCATATT 59.226 33.333 0.00 0.00 41.41 1.28
7033 7937 6.420913 ACCACAACTGAGTTAACAGATACT 57.579 37.500 8.61 0.00 40.63 2.12
7034 7938 6.456501 ACCACAACTGAGTTAACAGATACTC 58.543 40.000 8.61 0.00 40.89 2.59
7035 7939 5.869888 CCACAACTGAGTTAACAGATACTCC 59.130 44.000 8.61 0.00 40.00 3.85
7036 7940 5.869888 CACAACTGAGTTAACAGATACTCCC 59.130 44.000 8.61 0.00 40.00 4.30
7037 7941 5.780793 ACAACTGAGTTAACAGATACTCCCT 59.219 40.000 8.61 0.00 40.00 4.20
7038 7942 6.071278 ACAACTGAGTTAACAGATACTCCCTC 60.071 42.308 8.61 0.00 40.00 4.30
7039 7943 4.957327 ACTGAGTTAACAGATACTCCCTCC 59.043 45.833 8.61 0.00 40.00 4.30
7040 7944 3.952323 TGAGTTAACAGATACTCCCTCCG 59.048 47.826 8.61 0.00 40.00 4.63
7041 7945 3.952967 GAGTTAACAGATACTCCCTCCGT 59.047 47.826 8.61 0.00 35.78 4.69
7042 7946 4.351127 AGTTAACAGATACTCCCTCCGTT 58.649 43.478 8.61 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.285368 TAGACCCACAGCCCCCAG 60.285 66.667 0.00 0.00 0.00 4.45
242 252 2.017782 CAAGACTAGCTAGGCTGTCGA 58.982 52.381 29.93 0.00 41.95 4.20
243 253 2.017782 TCAAGACTAGCTAGGCTGTCG 58.982 52.381 29.93 20.10 41.95 4.35
245 255 2.494073 GTGTCAAGACTAGCTAGGCTGT 59.506 50.000 29.93 16.45 41.95 4.40
266 276 8.467402 AAGAAATCATACTCGTACTTGTGAAG 57.533 34.615 0.00 0.00 0.00 3.02
319 329 2.140717 GATCAAACAGTTCGGTTCGGT 58.859 47.619 0.00 0.00 0.00 4.69
320 330 1.463444 GGATCAAACAGTTCGGTTCGG 59.537 52.381 0.00 0.00 0.00 4.30
321 331 1.463444 GGGATCAAACAGTTCGGTTCG 59.537 52.381 0.00 0.00 0.00 3.95
322 332 1.463444 CGGGATCAAACAGTTCGGTTC 59.537 52.381 0.00 0.00 0.00 3.62
323 333 1.202722 ACGGGATCAAACAGTTCGGTT 60.203 47.619 0.00 0.00 0.00 4.44
341 351 4.109766 TGTAGATGGCAATTAGTTCGACG 58.890 43.478 0.00 0.00 0.00 5.12
361 371 7.490657 TGGACAGTAGTTATAGGTTCAATGT 57.509 36.000 0.00 0.00 0.00 2.71
393 432 1.247567 CGTGTCTTCCCATTTTGCCT 58.752 50.000 0.00 0.00 0.00 4.75
421 460 7.081976 CACTTAGGTTTAAAAGAAATGGTCCG 58.918 38.462 0.00 0.00 0.00 4.79
430 469 8.911918 TGAGTTATGCACTTAGGTTTAAAAGA 57.088 30.769 0.00 0.00 35.01 2.52
431 470 8.784043 ACTGAGTTATGCACTTAGGTTTAAAAG 58.216 33.333 0.00 0.00 42.36 2.27
432 471 8.564574 CACTGAGTTATGCACTTAGGTTTAAAA 58.435 33.333 0.00 0.00 42.36 1.52
450 489 3.746492 GTGATTAGGCGAAACACTGAGTT 59.254 43.478 12.28 0.00 43.89 3.01
451 490 3.326747 GTGATTAGGCGAAACACTGAGT 58.673 45.455 12.28 0.00 37.73 3.41
454 493 2.699954 AGGTGATTAGGCGAAACACTG 58.300 47.619 17.40 0.00 39.96 3.66
536 584 6.774170 AGCATCATTCAGGATAAAAGCATGTA 59.226 34.615 0.00 0.00 0.00 2.29
571 619 1.068588 CACTTTCAGTCTGACCGACCA 59.931 52.381 0.78 0.00 43.91 4.02
574 622 4.365723 GTTAACACTTTCAGTCTGACCGA 58.634 43.478 0.78 0.00 0.00 4.69
575 623 3.493503 GGTTAACACTTTCAGTCTGACCG 59.506 47.826 8.10 0.00 0.00 4.79
576 624 4.272748 GTGGTTAACACTTTCAGTCTGACC 59.727 45.833 8.10 0.00 46.72 4.02
577 625 5.405331 GTGGTTAACACTTTCAGTCTGAC 57.595 43.478 8.10 0.00 46.72 3.51
670 718 1.396301 CAAGATCTGCTCTCGTTTGCC 59.604 52.381 0.00 0.00 31.03 4.52
767 816 3.578282 AGGCAGGAACTTAAACAATTGGG 59.422 43.478 10.83 0.00 34.60 4.12
817 866 7.038659 AGATTGCATCTCTTTATATAGCGGTC 58.961 38.462 0.00 0.00 33.42 4.79
832 881 3.201708 AGCTAAGTTGGGAGATTGCATCT 59.798 43.478 0.00 0.00 43.70 2.90
835 884 2.356125 GGAGCTAAGTTGGGAGATTGCA 60.356 50.000 0.00 0.00 0.00 4.08
838 887 1.847088 GGGGAGCTAAGTTGGGAGATT 59.153 52.381 0.00 0.00 0.00 2.40
849 898 0.605319 CAACAAGCACGGGGAGCTAA 60.605 55.000 0.00 0.00 42.53 3.09
861 910 2.805845 CAAGATATGGCTGCAACAAGC 58.194 47.619 0.50 0.00 45.96 4.01
899 948 4.373116 GTGCACGCCGAGGGAAGA 62.373 66.667 0.00 0.00 0.00 2.87
963 1018 5.875910 GTGACTAGAAGACTGTCAGCTAGTA 59.124 44.000 27.50 18.65 41.14 1.82
964 1019 4.698304 GTGACTAGAAGACTGTCAGCTAGT 59.302 45.833 27.66 27.66 43.06 2.57
994 1049 2.477825 CCATAGTGCTTCCATCGACTG 58.522 52.381 0.00 0.00 0.00 3.51
999 1054 3.004752 ACAACCCATAGTGCTTCCATC 57.995 47.619 0.00 0.00 0.00 3.51
1054 1109 1.614241 GGGTGGCTCCATCTGTACGT 61.614 60.000 8.03 0.00 38.11 3.57
1146 1201 2.891580 GACATCGCAGGTAGGATTAGGA 59.108 50.000 0.00 0.00 0.00 2.94
1203 1258 2.030946 GCTCTGCGTGGTTAGCTAATTG 59.969 50.000 9.88 1.49 35.28 2.32
1205 1260 1.207089 TGCTCTGCGTGGTTAGCTAAT 59.793 47.619 9.88 0.00 35.95 1.73
1209 1264 1.374758 AGTGCTCTGCGTGGTTAGC 60.375 57.895 0.00 0.00 35.51 3.09
1222 1277 4.511454 CGTGGTGCATAATATAACAGTGCT 59.489 41.667 0.00 0.00 36.78 4.40
1223 1278 4.319477 CCGTGGTGCATAATATAACAGTGC 60.319 45.833 0.00 0.00 36.39 4.40
1225 1280 5.031066 ACCGTGGTGCATAATATAACAGT 57.969 39.130 0.00 0.00 0.00 3.55
1226 1281 5.407387 GGTACCGTGGTGCATAATATAACAG 59.593 44.000 9.37 0.00 32.33 3.16
1227 1282 5.163332 TGGTACCGTGGTGCATAATATAACA 60.163 40.000 7.57 0.00 32.33 2.41
1228 1283 5.299148 TGGTACCGTGGTGCATAATATAAC 58.701 41.667 7.57 0.00 32.33 1.89
1229 1284 5.543714 CTGGTACCGTGGTGCATAATATAA 58.456 41.667 7.57 0.00 32.33 0.98
1230 1285 4.561938 GCTGGTACCGTGGTGCATAATATA 60.562 45.833 7.57 0.00 32.33 0.86
1231 1286 3.805807 GCTGGTACCGTGGTGCATAATAT 60.806 47.826 7.57 0.00 32.33 1.28
1232 1287 2.484065 GCTGGTACCGTGGTGCATAATA 60.484 50.000 7.57 0.00 32.33 0.98
1233 1288 1.745827 GCTGGTACCGTGGTGCATAAT 60.746 52.381 7.57 0.00 32.33 1.28
1248 1303 1.203162 TGATTGGGTTTGGATGCTGGT 60.203 47.619 0.00 0.00 0.00 4.00
1290 1345 5.068329 TCAGTCTCATGCATACTTACTCCAG 59.932 44.000 0.00 0.00 0.00 3.86
1360 1416 0.318784 ACGACGCTGGTCTTGAAGAC 60.319 55.000 16.70 16.70 44.32 3.01
1443 1499 1.257743 ACCAGCTCTCGAACAGCTTA 58.742 50.000 14.50 0.00 45.34 3.09
1949 2009 1.850377 CATTTGTGGCTTTGTTCGCA 58.150 45.000 0.00 0.00 0.00 5.10
1950 2010 0.508213 GCATTTGTGGCTTTGTTCGC 59.492 50.000 0.00 0.00 0.00 4.70
1951 2011 2.138596 AGCATTTGTGGCTTTGTTCG 57.861 45.000 0.00 0.00 38.81 3.95
2021 2137 0.997196 GCCGTTTGACTGGTCGTATC 59.003 55.000 0.00 0.00 0.00 2.24
2053 2169 0.036294 AGAAGCTTAACGGAGTGGGC 60.036 55.000 0.00 0.00 45.00 5.36
2144 2381 2.169978 CCTCATCATCCTCTTGAGCACA 59.830 50.000 0.00 0.00 36.41 4.57
2249 2486 4.371417 AGGGCCACGGTCTCGGTA 62.371 66.667 6.18 0.00 41.39 4.02
2264 2501 1.021390 GCACGAACATGAGGTCCAGG 61.021 60.000 0.00 0.00 0.00 4.45
2386 2623 5.968387 AAGTCGCATGCAGTTTATACTAC 57.032 39.130 19.57 2.61 31.96 2.73
2668 2905 5.784177 AGTCACTGTTACATCGAGTCAATT 58.216 37.500 0.00 0.00 0.00 2.32
2669 2906 5.392767 AGTCACTGTTACATCGAGTCAAT 57.607 39.130 0.00 0.00 0.00 2.57
2670 2907 4.848562 AGTCACTGTTACATCGAGTCAA 57.151 40.909 0.00 0.00 0.00 3.18
2671 2908 5.952526 TTAGTCACTGTTACATCGAGTCA 57.047 39.130 0.00 0.00 0.00 3.41
2702 2939 0.905357 CCACTAGTGCAGCCCTAACT 59.095 55.000 17.86 0.00 0.00 2.24
2735 2972 5.508200 TCAACTTTGCCACTATCGTTTTT 57.492 34.783 0.00 0.00 0.00 1.94
2736 2973 5.705609 ATCAACTTTGCCACTATCGTTTT 57.294 34.783 0.00 0.00 0.00 2.43
2737 2974 6.349033 GGTTATCAACTTTGCCACTATCGTTT 60.349 38.462 0.00 0.00 0.00 3.60
2738 2975 5.123344 GGTTATCAACTTTGCCACTATCGTT 59.877 40.000 0.00 0.00 0.00 3.85
2758 2995 2.790433 GCATTTGGTCTGTCAGGGTTA 58.210 47.619 0.00 0.00 0.00 2.85
2898 3213 7.039923 AGTCTAGTGTCGTTAATTTCTTCCTCA 60.040 37.037 0.00 0.00 0.00 3.86
2932 3247 3.906846 AGTTTCATCAGTCCTTCAGAGGT 59.093 43.478 0.00 0.00 43.97 3.85
2960 3275 1.856539 AAGGATGCACAGAGGTGGGG 61.857 60.000 0.00 0.00 45.38 4.96
3041 3356 3.153369 TCAATGTCTTGCAAGGCCTTA 57.847 42.857 27.35 10.35 32.11 2.69
3155 3473 3.056322 CCCAAAGGAGGAGAATGCAAAAG 60.056 47.826 0.00 0.00 33.47 2.27
3250 3568 0.916086 ACGCCAATGGGTCCTCATAA 59.084 50.000 0.00 0.00 36.17 1.90
3341 3659 1.658994 ACGTTGAGTTCGCTTCCAAA 58.341 45.000 0.00 0.00 0.00 3.28
3371 3691 3.482786 GAAGTTACATTCAGCTTGTGCG 58.517 45.455 0.00 0.00 45.42 5.34
3372 3692 3.667960 CGGAAGTTACATTCAGCTTGTGC 60.668 47.826 0.00 0.00 40.05 4.57
3374 3694 3.074412 CCGGAAGTTACATTCAGCTTGT 58.926 45.455 0.00 0.00 0.00 3.16
3376 3696 2.084546 GCCGGAAGTTACATTCAGCTT 58.915 47.619 5.05 0.00 31.10 3.74
3377 3697 1.003118 TGCCGGAAGTTACATTCAGCT 59.997 47.619 5.05 0.00 33.50 4.24
3385 3705 2.469516 CGCCCATGCCGGAAGTTAC 61.470 63.158 5.05 0.00 36.56 2.50
3401 3721 3.052082 CGATGATGGGCCATCCGC 61.052 66.667 36.86 27.82 39.87 5.54
3402 3722 1.669115 GTCGATGATGGGCCATCCG 60.669 63.158 36.86 32.32 39.87 4.18
3403 3723 1.669115 CGTCGATGATGGGCCATCC 60.669 63.158 36.86 24.15 39.87 3.51
3404 3724 1.669115 CCGTCGATGATGGGCCATC 60.669 63.158 34.65 34.65 40.88 3.51
3431 3751 2.920384 TACCACTCGCTGCCCACA 60.920 61.111 0.00 0.00 0.00 4.17
3437 3757 0.459237 CCTGAAGCTACCACTCGCTG 60.459 60.000 0.00 0.00 36.45 5.18
3438 3758 1.608717 CCCTGAAGCTACCACTCGCT 61.609 60.000 0.00 0.00 38.30 4.93
3440 3760 0.608640 AACCCTGAAGCTACCACTCG 59.391 55.000 0.00 0.00 0.00 4.18
3442 3762 2.174854 ACAAAACCCTGAAGCTACCACT 59.825 45.455 0.00 0.00 0.00 4.00
3443 3763 2.583143 ACAAAACCCTGAAGCTACCAC 58.417 47.619 0.00 0.00 0.00 4.16
3444 3764 3.306472 AACAAAACCCTGAAGCTACCA 57.694 42.857 0.00 0.00 0.00 3.25
3540 3865 9.692749 CGGAGTAGCTTATTTTGATTAGATGTA 57.307 33.333 0.00 0.00 0.00 2.29
3541 3866 8.204836 ACGGAGTAGCTTATTTTGATTAGATGT 58.795 33.333 0.00 0.00 41.94 3.06
3542 3867 8.594881 ACGGAGTAGCTTATTTTGATTAGATG 57.405 34.615 0.00 0.00 41.94 2.90
3587 3912 3.070018 ACTGAGTGACTGTTGCTATTGC 58.930 45.455 0.00 0.00 40.20 3.56
3600 3925 0.469892 TGAGTGGCCTGACTGAGTGA 60.470 55.000 3.32 0.00 0.00 3.41
3601 3926 0.037512 CTGAGTGGCCTGACTGAGTG 60.038 60.000 3.32 0.00 0.00 3.51
3602 3927 0.470833 ACTGAGTGGCCTGACTGAGT 60.471 55.000 9.19 9.19 35.80 3.41
3603 3928 0.246086 GACTGAGTGGCCTGACTGAG 59.754 60.000 3.32 6.19 33.75 3.35
3604 3929 0.469892 TGACTGAGTGGCCTGACTGA 60.470 55.000 3.32 0.00 0.00 3.41
3605 3930 0.037512 CTGACTGAGTGGCCTGACTG 60.038 60.000 3.32 1.73 0.00 3.51
3606 3931 0.470833 ACTGACTGAGTGGCCTGACT 60.471 55.000 3.32 0.00 31.75 3.41
3607 3932 2.053618 ACTGACTGAGTGGCCTGAC 58.946 57.895 3.32 0.00 31.75 3.51
3637 3962 4.236935 GAGAAACTCAGAGACTCAAGCAG 58.763 47.826 3.79 0.00 0.00 4.24
3653 3978 6.635030 AATAAGTCACAACTTGGGAGAAAC 57.365 37.500 0.00 0.00 45.37 2.78
3669 3994 6.549912 AACGTTCCAAGTTGGTAATAAGTC 57.450 37.500 21.35 0.00 39.03 3.01
3737 4062 1.333619 CACTACACCAAGCGCACTTTT 59.666 47.619 11.47 0.00 32.29 2.27
3745 4070 7.041984 GCTAATTAGATAACCACTACACCAAGC 60.042 40.741 16.85 0.00 0.00 4.01
3777 4102 0.541863 CGGTTCTCTGGCAACCCTAT 59.458 55.000 0.63 0.00 40.37 2.57
3840 4165 8.538701 TGATCCCATGCAAATACAGTAAAAATT 58.461 29.630 0.00 0.00 0.00 1.82
3876 4259 5.361285 CCAGACCTGCTTAGAGTACATTACT 59.639 44.000 0.00 0.00 42.86 2.24
3894 4277 0.816373 GGAGTCGTAGAACCCAGACC 59.184 60.000 0.00 0.00 39.69 3.85
3902 4285 3.306917 TTGCGAATTGGAGTCGTAGAA 57.693 42.857 0.00 0.00 39.69 2.10
3907 4295 3.063861 TGATGAATTGCGAATTGGAGTCG 59.936 43.478 0.00 0.00 41.46 4.18
3968 4357 4.883083 ACTCGACTTCTGTATTTGCTTCA 58.117 39.130 0.00 0.00 0.00 3.02
4027 4418 1.618837 ACTGAGCGCTTCTTCTTACCA 59.381 47.619 13.26 0.00 0.00 3.25
4033 4424 0.530288 AGAGGACTGAGCGCTTCTTC 59.470 55.000 13.26 11.69 0.00 2.87
4036 4427 0.811915 TACAGAGGACTGAGCGCTTC 59.188 55.000 13.26 4.92 46.03 3.86
4039 4430 1.134965 ACAATACAGAGGACTGAGCGC 60.135 52.381 0.00 0.00 46.03 5.92
4040 4431 2.534298 CACAATACAGAGGACTGAGCG 58.466 52.381 0.00 0.00 46.03 5.03
4081 4472 2.886512 GAAGCTGATTTGACCGCGCG 62.887 60.000 25.67 25.67 0.00 6.86
4114 4505 4.025979 GCGAGGGTTAAGTATCATTTGACG 60.026 45.833 0.00 0.00 0.00 4.35
4199 4599 1.737838 TCCATTTGCTTCTACCGCTG 58.262 50.000 0.00 0.00 0.00 5.18
5058 5530 9.609346 GGCAGGAGTATAGTAATTGAAGTAAAA 57.391 33.333 0.00 0.00 0.00 1.52
5059 5531 8.208903 GGGCAGGAGTATAGTAATTGAAGTAAA 58.791 37.037 0.00 0.00 0.00 2.01
5060 5532 7.346175 TGGGCAGGAGTATAGTAATTGAAGTAA 59.654 37.037 0.00 0.00 0.00 2.24
5061 5533 6.842280 TGGGCAGGAGTATAGTAATTGAAGTA 59.158 38.462 0.00 0.00 0.00 2.24
5062 5534 5.665812 TGGGCAGGAGTATAGTAATTGAAGT 59.334 40.000 0.00 0.00 0.00 3.01
5063 5535 6.174720 TGGGCAGGAGTATAGTAATTGAAG 57.825 41.667 0.00 0.00 0.00 3.02
5064 5536 6.763715 ATGGGCAGGAGTATAGTAATTGAA 57.236 37.500 0.00 0.00 0.00 2.69
5896 6662 4.390297 CGATTTCACCCTCAGAGTTCTTTC 59.610 45.833 0.00 0.00 0.00 2.62
5897 6663 4.319177 CGATTTCACCCTCAGAGTTCTTT 58.681 43.478 0.00 0.00 0.00 2.52
5905 6671 0.035056 AAGGCCGATTTCACCCTCAG 60.035 55.000 0.00 0.00 0.00 3.35
5909 6675 1.545841 AGAAAAGGCCGATTTCACCC 58.454 50.000 27.88 10.85 38.86 4.61
5937 6703 5.622378 GTCTTCCATCTGAAATGACGAAAC 58.378 41.667 0.00 0.00 31.06 2.78
6069 6835 1.065401 TGACTTTTTGCTGCGAACAGG 59.935 47.619 17.55 7.24 44.63 4.00
6293 7060 0.482446 TGGAATGGAACTGGCCTTGT 59.518 50.000 3.32 0.00 0.00 3.16
6330 7097 0.251341 GGTGGAGTGTTGCAAGGGAT 60.251 55.000 0.00 0.00 0.00 3.85
6372 7139 4.221262 ACCATCATGGGAAACAATCAACAG 59.779 41.667 9.04 0.00 43.37 3.16
6406 7173 2.163815 AGTAGACTCGTACACCATGTGC 59.836 50.000 0.00 0.00 36.98 4.57
6415 7182 6.783162 ACACAACATATGAGTAGACTCGTAC 58.217 40.000 10.38 0.00 44.50 3.67
6420 7187 8.988546 AGAGATACACAACATATGAGTAGACT 57.011 34.615 10.38 9.54 38.28 3.24
6609 7379 6.187727 AGACCTTACTTGAACAGGAATTCA 57.812 37.500 7.93 0.00 36.80 2.57
6664 7434 9.955102 AGTGTCCGAGCCGATAATATATATATA 57.045 33.333 5.66 4.92 0.00 0.86
6665 7435 8.731605 CAGTGTCCGAGCCGATAATATATATAT 58.268 37.037 0.00 0.00 0.00 0.86
6666 7436 7.718314 ACAGTGTCCGAGCCGATAATATATATA 59.282 37.037 0.00 0.00 0.00 0.86
6667 7437 6.546403 ACAGTGTCCGAGCCGATAATATATAT 59.454 38.462 0.00 0.00 0.00 0.86
6668 7438 5.884232 ACAGTGTCCGAGCCGATAATATATA 59.116 40.000 0.00 0.00 0.00 0.86
6669 7439 4.705507 ACAGTGTCCGAGCCGATAATATAT 59.294 41.667 0.00 0.00 0.00 0.86
6670 7440 4.077108 ACAGTGTCCGAGCCGATAATATA 58.923 43.478 0.00 0.00 0.00 0.86
6671 7441 2.891580 ACAGTGTCCGAGCCGATAATAT 59.108 45.455 0.00 0.00 0.00 1.28
6672 7442 2.304092 ACAGTGTCCGAGCCGATAATA 58.696 47.619 0.00 0.00 0.00 0.98
6673 7443 1.112113 ACAGTGTCCGAGCCGATAAT 58.888 50.000 0.00 0.00 0.00 1.28
6674 7444 0.892755 AACAGTGTCCGAGCCGATAA 59.107 50.000 0.00 0.00 0.00 1.75
6675 7445 0.172578 CAACAGTGTCCGAGCCGATA 59.827 55.000 0.00 0.00 0.00 2.92
6676 7446 1.079819 CAACAGTGTCCGAGCCGAT 60.080 57.895 0.00 0.00 0.00 4.18
6677 7447 2.338620 CAACAGTGTCCGAGCCGA 59.661 61.111 0.00 0.00 0.00 5.54
6678 7448 2.029073 ACAACAGTGTCCGAGCCG 59.971 61.111 0.00 0.00 29.49 5.52
6686 7456 3.389329 AGGAGAATGTGAGACAACAGTGT 59.611 43.478 0.00 0.00 42.10 3.55
6687 7457 3.993081 GAGGAGAATGTGAGACAACAGTG 59.007 47.826 0.00 0.00 32.52 3.66
6688 7458 3.900601 AGAGGAGAATGTGAGACAACAGT 59.099 43.478 0.00 0.00 32.52 3.55
6689 7459 4.533919 AGAGGAGAATGTGAGACAACAG 57.466 45.455 0.00 0.00 32.52 3.16
6690 7460 4.963318 AAGAGGAGAATGTGAGACAACA 57.037 40.909 0.00 0.00 0.00 3.33
6691 7461 7.913674 AATAAAGAGGAGAATGTGAGACAAC 57.086 36.000 0.00 0.00 0.00 3.32
6704 7474 9.343539 CCCCTACTGATTTTTAATAAAGAGGAG 57.656 37.037 0.00 0.00 0.00 3.69
6705 7475 7.778382 GCCCCTACTGATTTTTAATAAAGAGGA 59.222 37.037 0.00 0.00 0.00 3.71
6706 7476 7.780271 AGCCCCTACTGATTTTTAATAAAGAGG 59.220 37.037 0.00 0.00 0.00 3.69
6707 7477 8.753497 AGCCCCTACTGATTTTTAATAAAGAG 57.247 34.615 0.00 0.00 0.00 2.85
6708 7478 9.185680 GAAGCCCCTACTGATTTTTAATAAAGA 57.814 33.333 0.00 0.00 0.00 2.52
6709 7479 9.190317 AGAAGCCCCTACTGATTTTTAATAAAG 57.810 33.333 0.00 0.00 0.00 1.85
6710 7480 9.185680 GAGAAGCCCCTACTGATTTTTAATAAA 57.814 33.333 0.00 0.00 0.00 1.40
6711 7481 7.778382 GGAGAAGCCCCTACTGATTTTTAATAA 59.222 37.037 0.00 0.00 0.00 1.40
6712 7482 7.287810 GGAGAAGCCCCTACTGATTTTTAATA 58.712 38.462 0.00 0.00 0.00 0.98
6713 7483 6.129874 GGAGAAGCCCCTACTGATTTTTAAT 58.870 40.000 0.00 0.00 0.00 1.40
6714 7484 5.506708 GGAGAAGCCCCTACTGATTTTTAA 58.493 41.667 0.00 0.00 0.00 1.52
6715 7485 5.112129 GGAGAAGCCCCTACTGATTTTTA 57.888 43.478 0.00 0.00 0.00 1.52
6716 7486 3.969553 GGAGAAGCCCCTACTGATTTTT 58.030 45.455 0.00 0.00 0.00 1.94
6717 7487 3.653835 GGAGAAGCCCCTACTGATTTT 57.346 47.619 0.00 0.00 0.00 1.82
6729 7499 1.916206 GACCAGAAGGGGGAGAAGCC 61.916 65.000 0.00 0.00 42.91 4.35
6730 7500 0.912006 AGACCAGAAGGGGGAGAAGC 60.912 60.000 0.00 0.00 42.91 3.86
6731 7501 2.292587 ACTAGACCAGAAGGGGGAGAAG 60.293 54.545 0.00 0.00 42.91 2.85
6732 7502 1.722851 ACTAGACCAGAAGGGGGAGAA 59.277 52.381 0.00 0.00 42.91 2.87
6733 7503 1.394532 ACTAGACCAGAAGGGGGAGA 58.605 55.000 0.00 0.00 42.91 3.71
6734 7504 2.255770 AACTAGACCAGAAGGGGGAG 57.744 55.000 0.00 0.00 42.91 4.30
6735 7505 2.735259 AAACTAGACCAGAAGGGGGA 57.265 50.000 0.00 0.00 42.91 4.81
6736 7506 3.808834 AAAAACTAGACCAGAAGGGGG 57.191 47.619 0.00 0.00 42.91 5.40
6842 7612 9.250624 CCCATTGTTTTGTTTCGTTTTCTATTA 57.749 29.630 0.00 0.00 0.00 0.98
6844 7614 6.704050 CCCCATTGTTTTGTTTCGTTTTCTAT 59.296 34.615 0.00 0.00 0.00 1.98
6845 7615 6.043411 CCCCATTGTTTTGTTTCGTTTTCTA 58.957 36.000 0.00 0.00 0.00 2.10
6846 7616 4.873259 CCCCATTGTTTTGTTTCGTTTTCT 59.127 37.500 0.00 0.00 0.00 2.52
6847 7617 4.632251 ACCCCATTGTTTTGTTTCGTTTTC 59.368 37.500 0.00 0.00 0.00 2.29
6848 7618 4.580868 ACCCCATTGTTTTGTTTCGTTTT 58.419 34.783 0.00 0.00 0.00 2.43
6849 7619 4.209307 ACCCCATTGTTTTGTTTCGTTT 57.791 36.364 0.00 0.00 0.00 3.60
6850 7620 3.897141 ACCCCATTGTTTTGTTTCGTT 57.103 38.095 0.00 0.00 0.00 3.85
6851 7621 3.897141 AACCCCATTGTTTTGTTTCGT 57.103 38.095 0.00 0.00 0.00 3.85
6852 7622 3.311048 CCAAACCCCATTGTTTTGTTTCG 59.689 43.478 0.00 0.00 36.33 3.46
6853 7623 3.629855 CCCAAACCCCATTGTTTTGTTTC 59.370 43.478 0.00 0.00 36.33 2.78
6854 7624 3.625853 CCCAAACCCCATTGTTTTGTTT 58.374 40.909 0.00 0.00 36.33 2.83
6855 7625 2.092158 CCCCAAACCCCATTGTTTTGTT 60.092 45.455 0.00 0.00 36.33 2.83
6856 7626 1.492599 CCCCAAACCCCATTGTTTTGT 59.507 47.619 0.00 0.00 36.33 2.83
6857 7627 1.202867 CCCCCAAACCCCATTGTTTTG 60.203 52.381 0.00 0.00 36.33 2.44
6858 7628 1.144691 CCCCCAAACCCCATTGTTTT 58.855 50.000 0.00 0.00 36.33 2.43
6859 7629 2.861353 CCCCCAAACCCCATTGTTT 58.139 52.632 0.00 0.00 38.95 2.83
6860 7630 4.658427 CCCCCAAACCCCATTGTT 57.342 55.556 0.00 0.00 0.00 2.83
6879 7649 2.177734 AGAAAGTACGAAGAGTCCCCC 58.822 52.381 0.00 0.00 0.00 5.40
6880 7650 3.957591 AAGAAAGTACGAAGAGTCCCC 57.042 47.619 0.00 0.00 0.00 4.81
6881 7651 4.244066 GGAAAGAAAGTACGAAGAGTCCC 58.756 47.826 0.00 0.00 0.00 4.46
6882 7652 3.919197 CGGAAAGAAAGTACGAAGAGTCC 59.081 47.826 0.00 0.00 0.00 3.85
6883 7653 3.364322 GCGGAAAGAAAGTACGAAGAGTC 59.636 47.826 0.00 0.00 0.00 3.36
6884 7654 3.243636 TGCGGAAAGAAAGTACGAAGAGT 60.244 43.478 0.00 0.00 0.00 3.24
6885 7655 3.121445 GTGCGGAAAGAAAGTACGAAGAG 59.879 47.826 0.00 0.00 0.00 2.85
6886 7656 3.054878 GTGCGGAAAGAAAGTACGAAGA 58.945 45.455 0.00 0.00 0.00 2.87
6887 7657 3.057734 AGTGCGGAAAGAAAGTACGAAG 58.942 45.455 0.00 0.00 0.00 3.79
6888 7658 2.798283 CAGTGCGGAAAGAAAGTACGAA 59.202 45.455 0.00 0.00 0.00 3.85
6889 7659 2.223876 ACAGTGCGGAAAGAAAGTACGA 60.224 45.455 0.00 0.00 0.00 3.43
6890 7660 2.132762 ACAGTGCGGAAAGAAAGTACG 58.867 47.619 0.00 0.00 0.00 3.67
6891 7661 5.390567 CCATAACAGTGCGGAAAGAAAGTAC 60.391 44.000 0.00 0.00 0.00 2.73
6892 7662 4.693566 CCATAACAGTGCGGAAAGAAAGTA 59.306 41.667 0.00 0.00 0.00 2.24
6893 7663 3.502211 CCATAACAGTGCGGAAAGAAAGT 59.498 43.478 0.00 0.00 0.00 2.66
6894 7664 3.751175 TCCATAACAGTGCGGAAAGAAAG 59.249 43.478 0.00 0.00 0.00 2.62
6895 7665 3.745799 TCCATAACAGTGCGGAAAGAAA 58.254 40.909 0.00 0.00 0.00 2.52
6896 7666 3.410631 TCCATAACAGTGCGGAAAGAA 57.589 42.857 0.00 0.00 0.00 2.52
6897 7667 3.627395 ATCCATAACAGTGCGGAAAGA 57.373 42.857 0.00 0.00 0.00 2.52
6898 7668 4.271049 CACTATCCATAACAGTGCGGAAAG 59.729 45.833 0.00 0.00 33.86 2.62
6899 7669 4.081365 TCACTATCCATAACAGTGCGGAAA 60.081 41.667 0.00 0.00 39.60 3.13
6900 7670 3.449377 TCACTATCCATAACAGTGCGGAA 59.551 43.478 0.00 0.00 39.60 4.30
6901 7671 3.028130 TCACTATCCATAACAGTGCGGA 58.972 45.455 0.00 0.00 39.60 5.54
6902 7672 3.123804 GTCACTATCCATAACAGTGCGG 58.876 50.000 0.00 0.00 39.60 5.69
6903 7673 2.789339 CGTCACTATCCATAACAGTGCG 59.211 50.000 0.00 0.00 39.60 5.34
6904 7674 3.782046 ACGTCACTATCCATAACAGTGC 58.218 45.455 0.00 0.00 39.60 4.40
6905 7675 7.200455 TCATTACGTCACTATCCATAACAGTG 58.800 38.462 0.00 0.00 40.83 3.66
6906 7676 7.342769 TCATTACGTCACTATCCATAACAGT 57.657 36.000 0.00 0.00 0.00 3.55
6909 7813 9.309516 TCTTTTCATTACGTCACTATCCATAAC 57.690 33.333 0.00 0.00 0.00 1.89
6923 7827 8.837059 CGTTGTATCCTTTTTCTTTTCATTACG 58.163 33.333 0.00 0.00 0.00 3.18
6927 7831 8.512138 CCTACGTTGTATCCTTTTTCTTTTCAT 58.488 33.333 0.00 0.00 0.00 2.57
6934 7838 5.813080 ATGCCTACGTTGTATCCTTTTTC 57.187 39.130 0.00 0.00 0.00 2.29
6958 7862 3.194329 TGAGTGTTTCATGTTGTGGCAAA 59.806 39.130 0.00 0.00 0.00 3.68
6959 7863 2.757314 TGAGTGTTTCATGTTGTGGCAA 59.243 40.909 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.