Multiple sequence alignment - TraesCS6A01G254900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G254900 chr6A 100.000 6703 0 0 1 6703 472503463 472510165 0.000000e+00 12379.0
1 TraesCS6A01G254900 chr6A 94.019 836 49 1 1 836 88760300 88761134 0.000000e+00 1266.0
2 TraesCS6A01G254900 chr6A 95.745 188 6 2 3964 4151 182496110 182496295 1.090000e-77 302.0
3 TraesCS6A01G254900 chr6A 90.000 160 16 0 4808 4967 559731312 559731471 2.450000e-49 207.0
4 TraesCS6A01G254900 chr6D 98.395 3738 51 4 879 4612 332903647 332907379 0.000000e+00 6562.0
5 TraesCS6A01G254900 chr6D 96.285 1265 34 7 4603 5854 332907422 332908686 0.000000e+00 2063.0
6 TraesCS6A01G254900 chr6D 80.406 689 74 32 6016 6676 332908977 332909632 1.020000e-127 468.0
7 TraesCS6A01G254900 chr6D 90.234 256 20 5 3964 4216 267216550 267216803 5.010000e-86 329.0
8 TraesCS6A01G254900 chr6D 89.266 177 7 4 5844 6016 332908706 332908874 1.890000e-50 211.0
9 TraesCS6A01G254900 chr6D 79.167 168 29 6 6307 6470 338513193 338513028 1.980000e-20 111.0
10 TraesCS6A01G254900 chr6D 96.774 62 2 0 3905 3966 267216451 267216512 3.310000e-18 104.0
11 TraesCS6A01G254900 chr6B 94.487 1578 45 14 840 2398 487541721 487540167 0.000000e+00 2394.0
12 TraesCS6A01G254900 chr6B 92.600 1446 63 15 4603 6016 487535693 487534260 0.000000e+00 2037.0
13 TraesCS6A01G254900 chr6B 96.302 676 19 6 3941 4612 487536407 487535734 0.000000e+00 1105.0
14 TraesCS6A01G254900 chr6B 91.608 572 37 5 3205 3767 487539105 487538536 0.000000e+00 780.0
15 TraesCS6A01G254900 chr6B 87.863 585 46 12 2555 3134 487539698 487539134 0.000000e+00 664.0
16 TraesCS6A01G254900 chr6B 92.381 105 8 0 2618 2722 487539810 487539706 4.190000e-32 150.0
17 TraesCS6A01G254900 chr6B 93.478 92 5 1 2316 2407 438299056 438299146 1.170000e-27 135.0
18 TraesCS6A01G254900 chr6B 96.000 75 3 0 3547 3621 438299417 438299491 9.130000e-24 122.0
19 TraesCS6A01G254900 chr6B 95.890 73 3 0 2421 2493 487540170 487540098 1.180000e-22 119.0
20 TraesCS6A01G254900 chr6B 83.051 118 9 5 6016 6133 487534096 487533990 5.530000e-16 97.1
21 TraesCS6A01G254900 chr6B 91.803 61 5 0 6408 6468 660450087 660450147 1.200000e-12 86.1
22 TraesCS6A01G254900 chr3A 95.078 833 39 2 1 832 110465873 110465042 0.000000e+00 1310.0
23 TraesCS6A01G254900 chr3A 93.625 251 14 2 3966 4216 708225633 708225881 2.280000e-99 374.0
24 TraesCS6A01G254900 chr3A 95.455 66 2 1 3905 3969 708225531 708225596 3.310000e-18 104.0
25 TraesCS6A01G254900 chr3A 91.667 72 5 1 3899 3969 734758483 734758554 1.540000e-16 99.0
26 TraesCS6A01G254900 chr1A 93.645 834 50 3 1 832 462403297 462402465 0.000000e+00 1243.0
27 TraesCS6A01G254900 chr1A 84.709 654 93 7 184 832 320265305 320264654 0.000000e+00 647.0
28 TraesCS6A01G254900 chr5D 92.455 835 58 5 1 832 362572936 362573768 0.000000e+00 1188.0
29 TraesCS6A01G254900 chr5D 83.432 169 26 2 6498 6665 333380189 333380022 9.000000e-34 156.0
30 TraesCS6A01G254900 chr5D 81.871 171 28 3 6498 6667 392073957 392074125 2.520000e-29 141.0
31 TraesCS6A01G254900 chr4A 84.505 839 119 10 1 832 90428869 90429703 0.000000e+00 819.0
32 TraesCS6A01G254900 chr7A 97.375 381 9 1 5039 5419 620155459 620155080 0.000000e+00 647.0
33 TraesCS6A01G254900 chr7A 97.583 331 8 0 5089 5419 156460430 156460100 9.760000e-158 568.0
34 TraesCS6A01G254900 chr7A 92.520 254 17 2 3966 4219 65573411 65573160 4.940000e-96 363.0
35 TraesCS6A01G254900 chr7A 95.455 66 2 1 3905 3969 65573513 65573448 3.310000e-18 104.0
36 TraesCS6A01G254900 chrUn 78.991 852 152 24 1 835 16302087 16301246 2.110000e-154 556.0
37 TraesCS6A01G254900 chrUn 79.034 849 151 24 1 832 453243117 453243955 2.110000e-154 556.0
38 TraesCS6A01G254900 chrUn 78.873 852 153 24 1 835 16270948 16270107 9.820000e-153 551.0
39 TraesCS6A01G254900 chrUn 84.783 92 12 2 6373 6462 30895780 30895871 2.570000e-14 91.6
40 TraesCS6A01G254900 chr2A 95.793 309 13 0 5111 5419 21840116 21840424 3.610000e-137 499.0
41 TraesCS6A01G254900 chr7D 92.578 256 17 2 3964 4219 102573785 102573532 3.820000e-97 366.0
42 TraesCS6A01G254900 chr7D 90.217 92 8 1 2316 2407 508598276 508598366 1.180000e-22 119.0
43 TraesCS6A01G254900 chr7D 95.455 66 2 1 3905 3969 102573884 102573819 3.310000e-18 104.0
44 TraesCS6A01G254900 chr7D 80.342 117 19 3 6375 6487 138510225 138510341 1.200000e-12 86.1
45 TraesCS6A01G254900 chr1D 88.387 310 29 4 2640 2947 170220891 170220587 3.820000e-97 366.0
46 TraesCS6A01G254900 chr1D 91.892 259 16 4 3964 4219 92984474 92984218 2.300000e-94 357.0
47 TraesCS6A01G254900 chr1D 91.406 256 17 4 3964 4216 25450688 25450941 4.980000e-91 346.0
48 TraesCS6A01G254900 chr1D 89.583 96 8 2 2313 2407 170220983 170220889 3.280000e-23 121.0
49 TraesCS6A01G254900 chr1D 95.455 66 2 1 3905 3969 25450589 25450654 3.310000e-18 104.0
50 TraesCS6A01G254900 chr1D 95.455 66 2 1 3905 3969 92984573 92984508 3.310000e-18 104.0
51 TraesCS6A01G254900 chr1D 82.474 97 17 0 6374 6470 88220188 88220092 1.200000e-12 86.1
52 TraesCS6A01G254900 chr1B 89.375 160 17 0 4808 4967 667238690 667238531 1.140000e-47 202.0
53 TraesCS6A01G254900 chr1B 81.000 200 34 4 6474 6671 606584851 606584654 9.000000e-34 156.0
54 TraesCS6A01G254900 chr3B 88.125 160 16 1 4808 4967 771131832 771131988 3.190000e-43 187.0
55 TraesCS6A01G254900 chr4D 77.879 330 42 20 6367 6671 421890931 421890608 6.910000e-40 176.0
56 TraesCS6A01G254900 chr4D 92.391 92 6 1 2316 2407 465578052 465577962 5.460000e-26 130.0
57 TraesCS6A01G254900 chr2B 85.799 169 20 4 6504 6671 424509859 424509694 6.910000e-40 176.0
58 TraesCS6A01G254900 chr2B 76.752 314 39 16 6365 6648 558046598 558046907 1.950000e-30 145.0
59 TraesCS6A01G254900 chr7B 84.024 169 24 3 6498 6665 303167692 303167858 6.960000e-35 159.0
60 TraesCS6A01G254900 chr7B 81.061 132 17 4 6525 6654 144628176 144628051 1.540000e-16 99.0
61 TraesCS6A01G254900 chr7B 93.939 66 3 1 3905 3969 293125541 293125606 1.540000e-16 99.0
62 TraesCS6A01G254900 chr7B 78.947 133 28 0 6338 6470 389015996 389015864 2.570000e-14 91.6
63 TraesCS6A01G254900 chr2D 83.432 169 26 2 6498 6665 638403179 638403346 9.000000e-34 156.0
64 TraesCS6A01G254900 chr5B 82.286 175 28 3 6498 6671 473085170 473085342 1.510000e-31 148.0
65 TraesCS6A01G254900 chr5B 84.314 102 14 2 6368 6467 35152076 35151975 1.540000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G254900 chr6A 472503463 472510165 6702 False 12379.0000 12379 100.00000 1 6703 1 chr6A.!!$F3 6702
1 TraesCS6A01G254900 chr6A 88760300 88761134 834 False 1266.0000 1266 94.01900 1 836 1 chr6A.!!$F1 835
2 TraesCS6A01G254900 chr6D 332903647 332909632 5985 False 2326.0000 6562 91.08800 879 6676 4 chr6D.!!$F2 5797
3 TraesCS6A01G254900 chr6B 487533990 487541721 7731 True 918.2625 2394 91.77275 840 6133 8 chr6B.!!$R1 5293
4 TraesCS6A01G254900 chr3A 110465042 110465873 831 True 1310.0000 1310 95.07800 1 832 1 chr3A.!!$R1 831
5 TraesCS6A01G254900 chr1A 462402465 462403297 832 True 1243.0000 1243 93.64500 1 832 1 chr1A.!!$R2 831
6 TraesCS6A01G254900 chr1A 320264654 320265305 651 True 647.0000 647 84.70900 184 832 1 chr1A.!!$R1 648
7 TraesCS6A01G254900 chr5D 362572936 362573768 832 False 1188.0000 1188 92.45500 1 832 1 chr5D.!!$F1 831
8 TraesCS6A01G254900 chr4A 90428869 90429703 834 False 819.0000 819 84.50500 1 832 1 chr4A.!!$F1 831
9 TraesCS6A01G254900 chrUn 16301246 16302087 841 True 556.0000 556 78.99100 1 835 1 chrUn.!!$R2 834
10 TraesCS6A01G254900 chrUn 453243117 453243955 838 False 556.0000 556 79.03400 1 832 1 chrUn.!!$F2 831
11 TraesCS6A01G254900 chrUn 16270107 16270948 841 True 551.0000 551 78.87300 1 835 1 chrUn.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 852 0.324460 CCTAACGAGAGGGGACTGGT 60.324 60.000 0.00 0.00 44.43 4.00 F
953 986 1.154580 GAACAAGTTCGCAGCGAGC 60.155 57.895 22.81 22.81 37.14 5.03 F
2055 2088 1.595382 GGATCTCATTCACCGGCCG 60.595 63.158 21.04 21.04 0.00 6.13 F
2820 3193 0.676466 CAAGTATGGGTCGGCTTGCA 60.676 55.000 0.00 0.00 33.14 4.08 F
3030 3412 0.613260 CCATCTGGAAAGGTGACCGA 59.387 55.000 0.00 0.00 37.39 4.69 F
4971 7430 0.609662 GCACTGGCCATTGGTTGAAT 59.390 50.000 23.17 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2134 0.108138 CCTCTTTTGCCGTCGGAGAT 60.108 55.000 17.49 0.00 40.67 2.75 R
2102 2135 1.292223 CCTCTTTTGCCGTCGGAGA 59.708 57.895 17.49 7.88 0.00 3.71 R
2967 3348 2.512974 GGGCATTCCCGTGTACCG 60.513 66.667 0.00 0.00 43.94 4.02 R
4971 7430 7.415095 CCAACAAGACAATGTTCTTTACTGTGA 60.415 37.037 0.00 0.00 41.44 3.58 R
5096 7555 5.121811 CAGCTAGTATGAACCATTGAAGCT 58.878 41.667 0.00 0.00 33.92 3.74 R
6309 8987 0.177604 AGTGAGCAGGCTGTAGATGC 59.822 55.000 17.16 0.53 40.29 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 4.505742 CCTGGACCCTATAGAAATTGCCTC 60.506 50.000 0.00 0.00 0.00 4.70
211 212 3.552875 CCTCTGGGAAGTCGTGTATCTA 58.447 50.000 0.00 0.00 33.58 1.98
285 286 0.618458 ATACGGTGCCAGAACCACAT 59.382 50.000 0.00 0.00 40.53 3.21
289 290 0.813184 GGTGCCAGAACCACATCATG 59.187 55.000 0.00 0.00 40.22 3.07
334 335 1.410004 CCCATTACTCGCTCCCAGTA 58.590 55.000 0.00 0.00 0.00 2.74
389 391 1.048724 CCTCCAGAGGGCGGATGTTA 61.049 60.000 5.74 0.00 41.97 2.41
399 401 1.810151 GGCGGATGTTAACTTTCTGCA 59.190 47.619 28.45 4.27 34.64 4.41
634 638 2.517959 CATCTTCTTGTTCCCTTGCCA 58.482 47.619 0.00 0.00 0.00 4.92
670 678 0.831307 GGGCTGTGACCTAACCCTAG 59.169 60.000 0.00 0.00 37.59 3.02
723 736 1.235281 GGGGAGTGAAACCAGAACGC 61.235 60.000 0.00 0.00 37.80 4.84
750 763 1.031029 GTCGTTAGACGGAGAGGGCT 61.031 60.000 0.27 0.00 42.81 5.19
775 788 2.630580 GCGATCAGAGGTAGGGAAAGAT 59.369 50.000 0.00 0.00 0.00 2.40
787 801 3.488363 AGGGAAAGATATCTCTACGCGT 58.512 45.455 19.17 19.17 0.00 6.01
837 851 2.506065 CCTAACGAGAGGGGACTGG 58.494 63.158 0.00 0.00 44.43 4.00
838 852 0.324460 CCTAACGAGAGGGGACTGGT 60.324 60.000 0.00 0.00 44.43 4.00
876 890 2.746277 CCCTTTCCGCCGGAAGTG 60.746 66.667 19.18 15.11 43.06 3.16
877 891 3.431725 CCTTTCCGCCGGAAGTGC 61.432 66.667 19.18 0.00 43.06 4.40
935 959 2.086869 CCAGCCCACAATCACAAGTAG 58.913 52.381 0.00 0.00 0.00 2.57
953 986 1.154580 GAACAAGTTCGCAGCGAGC 60.155 57.895 22.81 22.81 37.14 5.03
1098 1131 4.162690 GCCATCTCCTTCCGCCGT 62.163 66.667 0.00 0.00 0.00 5.68
2055 2088 1.595382 GGATCTCATTCACCGGCCG 60.595 63.158 21.04 21.04 0.00 6.13
2101 2134 5.738783 GCAGCAAAGGTTTGTTCCTATTCAA 60.739 40.000 4.45 0.00 40.24 2.69
2102 2135 6.458210 CAGCAAAGGTTTGTTCCTATTCAAT 58.542 36.000 4.45 0.00 40.24 2.57
2560 2931 7.572523 TCTGGCTGGAATTAAACTATCATTG 57.427 36.000 0.00 0.00 0.00 2.82
2606 2977 4.558898 CGCAGAAGCTATTATTCGGGTACT 60.559 45.833 0.00 0.00 39.10 2.73
2820 3193 0.676466 CAAGTATGGGTCGGCTTGCA 60.676 55.000 0.00 0.00 33.14 4.08
2967 3348 8.451908 ACATTGTAATTATAGAAGGCTGGAAC 57.548 34.615 0.00 0.00 0.00 3.62
3030 3412 0.613260 CCATCTGGAAAGGTGACCGA 59.387 55.000 0.00 0.00 37.39 4.69
3555 3940 9.869757 ATACTTCCCTACATTTGTTTTTATTGC 57.130 29.630 0.00 0.00 0.00 3.56
4711 7162 5.250774 ACACCCTTCATACCTGTAACTCAAT 59.749 40.000 0.00 0.00 0.00 2.57
4971 7430 0.609662 GCACTGGCCATTGGTTGAAT 59.390 50.000 23.17 0.00 0.00 2.57
5001 7460 9.349713 AGTAAAGAACATTGTCTTGTTGGAATA 57.650 29.630 0.00 0.00 39.85 1.75
5211 7673 5.934402 TGTTGTTTCTACCTAGAGATCCC 57.066 43.478 0.00 0.00 33.21 3.85
5269 7731 9.750125 TGCATGTACTAACTTGACATCTAATAG 57.250 33.333 0.00 0.00 33.65 1.73
5280 7742 7.831193 ACTTGACATCTAATAGAAAACCTGCAT 59.169 33.333 0.00 0.00 0.00 3.96
5281 7743 8.579850 TTGACATCTAATAGAAAACCTGCATT 57.420 30.769 0.00 0.00 0.00 3.56
5444 7921 0.463620 GTGTGCATCTCTCCCCTCTC 59.536 60.000 0.00 0.00 0.00 3.20
5448 7925 2.562298 GTGCATCTCTCCCCTCTCATAG 59.438 54.545 0.00 0.00 0.00 2.23
5697 8179 2.321263 ATCAGATGGTGAGCGGCCAG 62.321 60.000 2.24 0.00 39.07 4.85
5750 8232 2.362397 CCGCTCTTGCAAGGATCTACTA 59.638 50.000 25.73 3.34 39.64 1.82
5786 8268 4.287766 AGTTCTTGTCACCTGTTATCCC 57.712 45.455 0.00 0.00 0.00 3.85
5804 8286 9.005777 TGTTATCCCTGTTGTACTTGTAAAATC 57.994 33.333 0.00 0.00 0.00 2.17
5842 8324 4.742167 CGAGTGTAAGCCTTCACTGATATG 59.258 45.833 12.30 0.00 43.64 1.78
5900 8412 7.328493 CAGTACACTCGATTTGTCAGTTCATTA 59.672 37.037 3.21 0.00 0.00 1.90
5901 8413 8.035394 AGTACACTCGATTTGTCAGTTCATTAT 58.965 33.333 3.21 0.00 0.00 1.28
5902 8414 9.297586 GTACACTCGATTTGTCAGTTCATTATA 57.702 33.333 3.21 0.00 0.00 0.98
5903 8415 8.186178 ACACTCGATTTGTCAGTTCATTATAC 57.814 34.615 0.00 0.00 0.00 1.47
5904 8416 8.035394 ACACTCGATTTGTCAGTTCATTATACT 58.965 33.333 0.00 0.00 0.00 2.12
5905 8417 9.516314 CACTCGATTTGTCAGTTCATTATACTA 57.484 33.333 0.00 0.00 0.00 1.82
5906 8418 9.737427 ACTCGATTTGTCAGTTCATTATACTAG 57.263 33.333 0.00 0.00 0.00 2.57
5942 8454 4.647424 TGTGTGGTGAATTTCAGTTTCC 57.353 40.909 0.00 0.00 0.00 3.13
5943 8455 3.383185 TGTGTGGTGAATTTCAGTTTCCC 59.617 43.478 0.00 0.00 0.00 3.97
5950 8462 4.218635 GTGAATTTCAGTTTCCCCCTTCTC 59.781 45.833 0.00 0.00 0.00 2.87
5997 8513 1.286305 TAATGGCTGAGGGGTTCCCC 61.286 60.000 18.61 18.61 46.99 4.81
6012 8528 1.304713 CCCCCTGCAAAGATGTGCT 60.305 57.895 0.00 0.00 45.17 4.40
6013 8529 1.601419 CCCCCTGCAAAGATGTGCTG 61.601 60.000 0.00 0.00 45.17 4.41
6014 8530 0.609957 CCCCTGCAAAGATGTGCTGA 60.610 55.000 3.64 0.00 45.17 4.26
6015 8531 0.809385 CCCTGCAAAGATGTGCTGAG 59.191 55.000 3.64 0.00 45.17 3.35
6016 8532 0.809385 CCTGCAAAGATGTGCTGAGG 59.191 55.000 3.64 0.00 45.17 3.86
6017 8533 1.612462 CCTGCAAAGATGTGCTGAGGA 60.612 52.381 3.64 0.00 45.17 3.71
6019 8535 1.072806 TGCAAAGATGTGCTGAGGAGT 59.927 47.619 0.00 0.00 45.17 3.85
6020 8536 2.302733 TGCAAAGATGTGCTGAGGAGTA 59.697 45.455 0.00 0.00 45.17 2.59
6022 8538 4.162131 TGCAAAGATGTGCTGAGGAGTATA 59.838 41.667 0.00 0.00 45.17 1.47
6023 8539 5.163269 TGCAAAGATGTGCTGAGGAGTATAT 60.163 40.000 0.00 0.00 45.17 0.86
6024 8540 5.178996 GCAAAGATGTGCTGAGGAGTATATG 59.821 44.000 0.00 0.00 41.51 1.78
6025 8541 6.519382 CAAAGATGTGCTGAGGAGTATATGA 58.481 40.000 0.00 0.00 0.00 2.15
6027 8543 5.639139 AGATGTGCTGAGGAGTATATGAGA 58.361 41.667 0.00 0.00 0.00 3.27
6028 8544 6.255287 AGATGTGCTGAGGAGTATATGAGAT 58.745 40.000 0.00 0.00 0.00 2.75
6134 8812 8.062065 TGTCCACAAAGAAACTTGATAAAAGT 57.938 30.769 0.00 0.00 0.00 2.66
6135 8813 8.188139 TGTCCACAAAGAAACTTGATAAAAGTC 58.812 33.333 0.00 0.00 0.00 3.01
6160 8838 4.532126 AGGGTCATCGGCAATCTGAATATA 59.468 41.667 0.00 0.00 0.00 0.86
6161 8839 5.190528 AGGGTCATCGGCAATCTGAATATAT 59.809 40.000 0.00 0.00 0.00 0.86
6192 8870 3.334691 CCTCGTTCCAAATAGTGCTCAA 58.665 45.455 0.00 0.00 0.00 3.02
6194 8872 3.071479 TCGTTCCAAATAGTGCTCAACC 58.929 45.455 0.00 0.00 0.00 3.77
6200 8878 0.739813 AATAGTGCTCAACCGGCGAC 60.740 55.000 9.30 0.00 0.00 5.19
6202 8880 4.681978 GTGCTCAACCGGCGACCT 62.682 66.667 9.30 0.00 0.00 3.85
6207 8885 0.249073 CTCAACCGGCGACCTATGAG 60.249 60.000 9.30 10.43 0.00 2.90
6229 8907 0.975040 TGCCTCCTCAGCCTCTCTTC 60.975 60.000 0.00 0.00 0.00 2.87
6258 8936 3.932822 TCCATGCGTTGTGTTGTACTAT 58.067 40.909 0.00 0.00 0.00 2.12
6262 8940 5.293324 CCATGCGTTGTGTTGTACTATGTAT 59.707 40.000 0.00 0.00 29.54 2.29
6265 8943 7.886405 TGCGTTGTGTTGTACTATGTATTTA 57.114 32.000 0.00 0.00 0.00 1.40
6267 8945 7.599621 TGCGTTGTGTTGTACTATGTATTTAGT 59.400 33.333 0.00 0.00 36.43 2.24
6268 8946 8.437742 GCGTTGTGTTGTACTATGTATTTAGTT 58.562 33.333 0.00 0.00 34.35 2.24
6299 8977 4.875544 TGTGTTTTCTCTGTTACTGTGC 57.124 40.909 0.00 0.00 0.00 4.57
6301 8979 4.881273 TGTGTTTTCTCTGTTACTGTGCAT 59.119 37.500 0.00 0.00 0.00 3.96
6302 8980 5.356751 TGTGTTTTCTCTGTTACTGTGCATT 59.643 36.000 0.00 0.00 0.00 3.56
6304 8982 5.822519 TGTTTTCTCTGTTACTGTGCATTCT 59.177 36.000 0.00 0.00 0.00 2.40
6308 8986 6.590234 TCTCTGTTACTGTGCATTCTTAGA 57.410 37.500 0.00 0.00 0.00 2.10
6309 8987 6.625362 TCTCTGTTACTGTGCATTCTTAGAG 58.375 40.000 0.00 0.00 0.00 2.43
6310 8988 5.171476 TCTGTTACTGTGCATTCTTAGAGC 58.829 41.667 0.00 0.00 0.00 4.09
6311 8989 4.893608 TGTTACTGTGCATTCTTAGAGCA 58.106 39.130 0.00 0.00 35.63 4.26
6312 8990 5.491070 TGTTACTGTGCATTCTTAGAGCAT 58.509 37.500 0.00 0.00 40.78 3.79
6313 8991 5.582269 TGTTACTGTGCATTCTTAGAGCATC 59.418 40.000 0.00 0.00 40.78 3.91
6326 9004 2.600439 AGCATCTACAGCCTGCTCA 58.400 52.632 0.00 0.00 42.35 4.26
6327 9005 0.177604 AGCATCTACAGCCTGCTCAC 59.822 55.000 0.00 0.00 42.35 3.51
6328 9006 0.177604 GCATCTACAGCCTGCTCACT 59.822 55.000 0.00 0.00 33.15 3.41
6329 9007 1.410517 GCATCTACAGCCTGCTCACTA 59.589 52.381 0.00 0.00 33.15 2.74
6330 9008 2.159043 GCATCTACAGCCTGCTCACTAA 60.159 50.000 0.00 0.00 33.15 2.24
6331 9009 3.679917 GCATCTACAGCCTGCTCACTAAA 60.680 47.826 0.00 0.00 33.15 1.85
6332 9010 4.701765 CATCTACAGCCTGCTCACTAAAT 58.298 43.478 0.00 0.00 0.00 1.40
6333 9011 4.392921 TCTACAGCCTGCTCACTAAATC 57.607 45.455 0.00 0.00 0.00 2.17
6334 9012 2.409948 ACAGCCTGCTCACTAAATCC 57.590 50.000 0.00 0.00 0.00 3.01
6335 9013 1.293924 CAGCCTGCTCACTAAATCCG 58.706 55.000 0.00 0.00 0.00 4.18
6336 9014 1.134699 CAGCCTGCTCACTAAATCCGA 60.135 52.381 0.00 0.00 0.00 4.55
6345 9023 4.575885 CTCACTAAATCCGACCCTCAAAA 58.424 43.478 0.00 0.00 0.00 2.44
6353 9031 0.951558 CGACCCTCAAAAACCTGTGG 59.048 55.000 0.00 0.00 0.00 4.17
6359 9037 1.657181 CAAAAACCTGTGGACGCGC 60.657 57.895 5.73 0.00 0.00 6.86
6393 9071 2.045926 GCATTGACCGGGCACTCT 60.046 61.111 11.33 0.00 0.00 3.24
6402 9080 1.073923 ACCGGGCACTCTTCAAATCTT 59.926 47.619 6.32 0.00 0.00 2.40
6403 9081 1.470098 CCGGGCACTCTTCAAATCTTG 59.530 52.381 0.00 0.00 0.00 3.02
6405 9083 3.334691 CGGGCACTCTTCAAATCTTGTA 58.665 45.455 0.00 0.00 0.00 2.41
6417 9095 4.020573 TCAAATCTTGTAGTCCACATCCGT 60.021 41.667 0.00 0.00 36.90 4.69
6418 9096 3.526931 ATCTTGTAGTCCACATCCGTG 57.473 47.619 0.00 0.00 43.21 4.94
6432 9110 4.156008 CACATCCGTGTATCTCATATCCGA 59.844 45.833 0.00 0.00 38.41 4.55
6435 9113 6.773200 ACATCCGTGTATCTCATATCCGATAT 59.227 38.462 0.00 0.00 36.63 1.63
6461 9139 9.555727 TCCTAAATCCATACTAAAGCATACAAC 57.444 33.333 0.00 0.00 0.00 3.32
6468 9146 7.223971 TCCATACTAAAGCATACAACGTGAATC 59.776 37.037 0.00 0.00 0.00 2.52
6470 9148 6.165659 ACTAAAGCATACAACGTGAATCAC 57.834 37.500 2.75 2.75 0.00 3.06
6471 9149 4.419522 AAAGCATACAACGTGAATCACC 57.580 40.909 7.91 0.00 0.00 4.02
6472 9150 3.052455 AGCATACAACGTGAATCACCA 57.948 42.857 7.91 0.00 0.00 4.17
6473 9151 3.407698 AGCATACAACGTGAATCACCAA 58.592 40.909 7.91 0.00 0.00 3.67
6488 9192 7.703621 GTGAATCACCAAATGGACATAGAAATG 59.296 37.037 6.42 0.00 38.94 2.32
6491 9195 5.657745 TCACCAAATGGACATAGAAATGCAT 59.342 36.000 6.42 0.00 36.15 3.96
6495 9199 8.362639 ACCAAATGGACATAGAAATGCATATTC 58.637 33.333 6.42 6.57 36.15 1.75
6506 9210 5.771666 AGAAATGCATATTCCGATCACCAAT 59.228 36.000 0.00 0.00 0.00 3.16
6511 9215 6.108687 TGCATATTCCGATCACCAATAGATC 58.891 40.000 0.00 0.00 38.77 2.75
6512 9216 6.070596 TGCATATTCCGATCACCAATAGATCT 60.071 38.462 0.00 0.00 39.73 2.75
6514 9218 4.873746 TTCCGATCACCAATAGATCTCC 57.126 45.455 0.00 0.00 39.73 3.71
6518 9222 5.130311 TCCGATCACCAATAGATCTCCAAAA 59.870 40.000 0.00 0.00 39.73 2.44
6550 9254 8.655970 GCCAAAGTTCAAATAATCCACATAAAC 58.344 33.333 0.00 0.00 0.00 2.01
6555 9259 7.332430 AGTTCAAATAATCCACATAAACGACGA 59.668 33.333 0.00 0.00 0.00 4.20
6571 9276 6.502195 AACGACGAACAAGTTTAACTAGAC 57.498 37.500 0.00 0.00 0.00 2.59
6603 9308 5.770417 ACTCGAATTTAAAGACAGAGACGT 58.230 37.500 15.18 0.00 0.00 4.34
6614 9319 2.163412 GACAGAGACGTCAGAGCTTCAT 59.837 50.000 19.50 0.00 35.88 2.57
6615 9320 2.163412 ACAGAGACGTCAGAGCTTCATC 59.837 50.000 19.50 2.81 0.00 2.92
6670 9375 2.726691 CGCTGTTGTAGGCGTTCGG 61.727 63.158 0.00 0.00 45.34 4.30
6672 9377 1.005394 CTGTTGTAGGCGTTCGGGT 60.005 57.895 0.00 0.00 0.00 5.28
6673 9378 0.244450 CTGTTGTAGGCGTTCGGGTA 59.756 55.000 0.00 0.00 0.00 3.69
6674 9379 0.244450 TGTTGTAGGCGTTCGGGTAG 59.756 55.000 0.00 0.00 0.00 3.18
6676 9381 2.105729 GTAGGCGTTCGGGTAGGC 59.894 66.667 0.00 0.00 0.00 3.93
6677 9382 3.520862 TAGGCGTTCGGGTAGGCG 61.521 66.667 0.00 0.00 35.47 5.52
6680 9385 4.125695 GCGTTCGGGTAGGCGTCT 62.126 66.667 0.00 0.00 0.00 4.18
6681 9386 2.202570 CGTTCGGGTAGGCGTCTG 60.203 66.667 0.00 0.00 0.00 3.51
6682 9387 2.508663 GTTCGGGTAGGCGTCTGC 60.509 66.667 0.00 0.00 41.71 4.26
6683 9388 4.124351 TTCGGGTAGGCGTCTGCG 62.124 66.667 0.00 0.00 44.10 5.18
6694 9399 4.767255 GTCTGCGGCAGGAGGTGG 62.767 72.222 28.18 3.40 36.39 4.61
6699 9404 3.402681 CGGCAGGAGGTGGGTCAT 61.403 66.667 0.00 0.00 0.00 3.06
6700 9405 2.592308 GGCAGGAGGTGGGTCATC 59.408 66.667 0.00 0.00 0.00 2.92
6701 9406 2.187946 GCAGGAGGTGGGTCATCG 59.812 66.667 0.00 0.00 0.00 3.84
6702 9407 2.187946 CAGGAGGTGGGTCATCGC 59.812 66.667 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 1.171308 CCAGCCTCACATGACTTTGG 58.829 55.000 0.00 0.00 0.00 3.28
211 212 2.368548 GACAGGTTGGAAATTTGGGCTT 59.631 45.455 0.00 0.00 0.00 4.35
285 286 0.692756 TGGGTATTCCGAGGGCATGA 60.693 55.000 0.00 0.00 38.76 3.07
289 290 1.073199 CCATGGGTATTCCGAGGGC 59.927 63.158 2.85 0.00 36.67 5.19
334 335 1.606885 CCAATTCGCATGCTTGGGGT 61.607 55.000 23.17 0.32 36.58 4.95
389 391 2.689983 CTGGAACCTTGTGCAGAAAGTT 59.310 45.455 10.12 10.12 39.16 2.66
399 401 1.529244 GTGCAGCCTGGAACCTTGT 60.529 57.895 0.00 0.00 0.00 3.16
634 638 1.757699 GCCCGGTAGAACTCATCTTCT 59.242 52.381 0.00 0.00 39.71 2.85
670 678 4.752879 TAGCGGCGACTGGTTGGC 62.753 66.667 12.98 4.67 36.29 4.52
723 736 2.505557 GTCTAACGACGGGTGCGG 60.506 66.667 0.00 0.00 0.00 5.69
748 761 1.269517 CCTACCTCTGATCGCTGAAGC 60.270 57.143 0.00 0.00 37.78 3.86
750 763 1.063942 TCCCTACCTCTGATCGCTGAA 60.064 52.381 0.00 0.00 0.00 3.02
858 872 4.717313 ACTTCCGGCGGAAAGGGC 62.717 66.667 37.48 0.00 41.54 5.19
876 890 0.038159 AGTACTGTTGGCGAGTCTGC 60.038 55.000 0.00 0.00 0.00 4.26
877 891 1.670087 CCAGTACTGTTGGCGAGTCTG 60.670 57.143 21.18 0.00 0.00 3.51
935 959 1.154580 GCTCGCTGCGAACTTGTTC 60.155 57.895 25.86 3.60 34.74 3.18
953 986 2.000447 GGTTCGAGGTTTTGGATCGAG 59.000 52.381 0.00 0.00 45.23 4.04
992 1025 1.002315 CCTTGGCCTCCATTGTTTTGG 59.998 52.381 3.32 0.00 38.18 3.28
1362 1395 3.494336 CGTACCGCGTCGAGACCT 61.494 66.667 4.92 0.00 35.54 3.85
2055 2088 3.119096 GCCGTCTCCTTTGCCGTC 61.119 66.667 0.00 0.00 0.00 4.79
2101 2134 0.108138 CCTCTTTTGCCGTCGGAGAT 60.108 55.000 17.49 0.00 40.67 2.75
2102 2135 1.292223 CCTCTTTTGCCGTCGGAGA 59.708 57.895 17.49 7.88 0.00 3.71
2606 2977 1.679977 GCTTCAGCAGGAATGGCCA 60.680 57.895 8.56 8.56 41.59 5.36
2659 3030 2.778299 TGTTTGTCCACTGATACCAGC 58.222 47.619 0.00 0.00 44.16 4.85
2668 3039 3.932089 GCACAAATTGTTGTTTGTCCACT 59.068 39.130 0.00 0.00 46.32 4.00
2710 3081 5.663106 TCATGAAGGTAGCTAAGAGAACCAT 59.337 40.000 0.00 0.00 34.29 3.55
2820 3193 2.584835 TTGTATTGCTTCCAGCCAGT 57.415 45.000 0.00 0.00 41.51 4.00
2967 3348 2.512974 GGGCATTCCCGTGTACCG 60.513 66.667 0.00 0.00 43.94 4.02
3168 3550 9.421806 CAATGTTGCTTTCTTCCACATTTATTA 57.578 29.630 0.00 0.00 0.00 0.98
3218 3600 2.943690 CAACAGGAAGATCATGCTGGAG 59.056 50.000 21.23 10.71 42.45 3.86
3555 3940 5.314923 CCATGTTGGTTCAGACAAATAGG 57.685 43.478 0.00 0.00 31.35 2.57
4971 7430 7.415095 CCAACAAGACAATGTTCTTTACTGTGA 60.415 37.037 0.00 0.00 41.44 3.58
5014 7473 8.589701 TCAGTGTCTATATTCCTGTTCACTAA 57.410 34.615 0.00 0.00 34.29 2.24
5096 7555 5.121811 CAGCTAGTATGAACCATTGAAGCT 58.878 41.667 0.00 0.00 33.92 3.74
5211 7673 7.911651 ACTATATGGGATCCAAATCTGTGTAG 58.088 38.462 15.23 1.62 36.95 2.74
5294 7771 5.342259 GCGCTTTTGAAACGAAAACTATCAT 59.658 36.000 0.00 0.00 0.00 2.45
5305 7782 4.614673 AGCAGCGCTTTTGAAACG 57.385 50.000 7.50 0.00 33.89 3.60
5315 7792 0.308993 AAACAGACTTGAAGCAGCGC 59.691 50.000 0.00 0.00 0.00 5.92
5444 7921 7.665690 AGTATCTGGTATGCAGAAGAACTATG 58.334 38.462 0.00 0.00 31.89 2.23
5448 7925 7.093992 GGATAGTATCTGGTATGCAGAAGAAC 58.906 42.308 9.97 0.00 31.89 3.01
5750 8232 8.774586 GTGACAAGAACTATGTAGTGAAACAAT 58.225 33.333 0.00 0.00 41.43 2.71
5786 8268 6.148811 ACCATCCGATTTTACAAGTACAACAG 59.851 38.462 0.00 0.00 0.00 3.16
5804 8286 1.227089 CTCGCTCCTTCACCATCCG 60.227 63.158 0.00 0.00 0.00 4.18
5855 8367 0.179018 GATGGGCTTAGACGGGCAAT 60.179 55.000 0.00 0.00 0.00 3.56
5900 8412 9.770097 CACACATTTGGTCATTCTATCTAGTAT 57.230 33.333 0.00 0.00 0.00 2.12
5901 8413 8.204160 CCACACATTTGGTCATTCTATCTAGTA 58.796 37.037 0.00 0.00 0.00 1.82
5902 8414 7.050377 CCACACATTTGGTCATTCTATCTAGT 58.950 38.462 0.00 0.00 0.00 2.57
5903 8415 7.488187 CCACACATTTGGTCATTCTATCTAG 57.512 40.000 0.00 0.00 0.00 2.43
5942 8454 5.367937 TGATATCCTCAAAGAAGAGAAGGGG 59.632 44.000 0.00 0.00 37.87 4.79
5943 8455 6.491714 TGATATCCTCAAAGAAGAGAAGGG 57.508 41.667 0.00 0.00 37.87 3.95
5997 8513 0.809385 CCTCAGCACATCTTTGCAGG 59.191 55.000 0.00 0.00 45.62 4.85
6134 8812 0.911769 AGATTGCCGATGACCCTTGA 59.088 50.000 0.00 0.00 0.00 3.02
6135 8813 1.019673 CAGATTGCCGATGACCCTTG 58.980 55.000 0.00 0.00 0.00 3.61
6146 8824 6.619446 GCGACTGACAATATATTCAGATTGCC 60.619 42.308 17.56 0.00 41.65 4.52
6160 8838 0.389948 GGAACGAGGCGACTGACAAT 60.390 55.000 0.00 0.00 44.43 2.71
6161 8839 1.006571 GGAACGAGGCGACTGACAA 60.007 57.895 0.00 0.00 44.43 3.18
6233 8911 1.536766 ACAACACAACGCATGGATCAG 59.463 47.619 0.00 0.00 0.00 2.90
6291 8969 5.982356 AGATGCTCTAAGAATGCACAGTAA 58.018 37.500 0.00 0.00 39.63 2.24
6292 8970 5.604758 AGATGCTCTAAGAATGCACAGTA 57.395 39.130 0.00 0.00 39.63 2.74
6293 8971 4.484537 AGATGCTCTAAGAATGCACAGT 57.515 40.909 0.00 0.00 39.63 3.55
6294 8972 5.354767 TGTAGATGCTCTAAGAATGCACAG 58.645 41.667 0.00 0.00 39.63 3.66
6296 8974 4.210955 GCTGTAGATGCTCTAAGAATGCAC 59.789 45.833 0.00 0.00 39.63 4.57
6298 8976 3.745458 GGCTGTAGATGCTCTAAGAATGC 59.255 47.826 0.00 0.00 29.58 3.56
6299 8977 4.989797 CAGGCTGTAGATGCTCTAAGAATG 59.010 45.833 6.28 0.00 29.58 2.67
6301 8979 3.181471 GCAGGCTGTAGATGCTCTAAGAA 60.181 47.826 17.16 0.00 37.00 2.52
6302 8980 2.363680 GCAGGCTGTAGATGCTCTAAGA 59.636 50.000 17.16 0.00 37.00 2.10
6304 8982 2.898729 GCAGGCTGTAGATGCTCTAA 57.101 50.000 17.16 0.00 37.00 2.10
6309 8987 0.177604 AGTGAGCAGGCTGTAGATGC 59.822 55.000 17.16 0.53 40.29 3.91
6310 8988 3.808466 TTAGTGAGCAGGCTGTAGATG 57.192 47.619 17.16 0.00 0.00 2.90
6311 8989 4.202305 GGATTTAGTGAGCAGGCTGTAGAT 60.202 45.833 17.16 0.65 0.00 1.98
6312 8990 3.133003 GGATTTAGTGAGCAGGCTGTAGA 59.867 47.826 17.16 0.00 0.00 2.59
6313 8991 3.462021 GGATTTAGTGAGCAGGCTGTAG 58.538 50.000 17.16 0.00 0.00 2.74
6314 8992 2.159099 CGGATTTAGTGAGCAGGCTGTA 60.159 50.000 17.16 0.00 0.00 2.74
6316 8994 1.134699 TCGGATTTAGTGAGCAGGCTG 60.135 52.381 10.94 10.94 0.00 4.85
6317 8995 1.134670 GTCGGATTTAGTGAGCAGGCT 60.135 52.381 0.00 0.00 0.00 4.58
6318 8996 1.291132 GTCGGATTTAGTGAGCAGGC 58.709 55.000 0.00 0.00 0.00 4.85
6319 8997 1.473434 GGGTCGGATTTAGTGAGCAGG 60.473 57.143 0.00 0.00 31.98 4.85
6320 8998 1.482593 AGGGTCGGATTTAGTGAGCAG 59.517 52.381 0.00 0.00 31.98 4.24
6321 8999 1.480954 GAGGGTCGGATTTAGTGAGCA 59.519 52.381 0.00 0.00 31.98 4.26
6322 9000 1.480954 TGAGGGTCGGATTTAGTGAGC 59.519 52.381 0.00 0.00 0.00 4.26
6323 9001 3.887621 TTGAGGGTCGGATTTAGTGAG 57.112 47.619 0.00 0.00 0.00 3.51
6324 9002 4.627284 TTTTGAGGGTCGGATTTAGTGA 57.373 40.909 0.00 0.00 0.00 3.41
6325 9003 4.082949 GGTTTTTGAGGGTCGGATTTAGTG 60.083 45.833 0.00 0.00 0.00 2.74
6326 9004 4.077108 GGTTTTTGAGGGTCGGATTTAGT 58.923 43.478 0.00 0.00 0.00 2.24
6327 9005 4.156008 CAGGTTTTTGAGGGTCGGATTTAG 59.844 45.833 0.00 0.00 0.00 1.85
6328 9006 4.076394 CAGGTTTTTGAGGGTCGGATTTA 58.924 43.478 0.00 0.00 0.00 1.40
6329 9007 2.890945 CAGGTTTTTGAGGGTCGGATTT 59.109 45.455 0.00 0.00 0.00 2.17
6330 9008 2.158519 ACAGGTTTTTGAGGGTCGGATT 60.159 45.455 0.00 0.00 0.00 3.01
6331 9009 1.423921 ACAGGTTTTTGAGGGTCGGAT 59.576 47.619 0.00 0.00 0.00 4.18
6332 9010 0.841289 ACAGGTTTTTGAGGGTCGGA 59.159 50.000 0.00 0.00 0.00 4.55
6333 9011 0.951558 CACAGGTTTTTGAGGGTCGG 59.048 55.000 0.00 0.00 0.00 4.79
6334 9012 0.951558 CCACAGGTTTTTGAGGGTCG 59.048 55.000 0.00 0.00 0.00 4.79
6335 9013 1.954382 GTCCACAGGTTTTTGAGGGTC 59.046 52.381 0.00 0.00 30.74 4.46
6336 9014 1.749286 CGTCCACAGGTTTTTGAGGGT 60.749 52.381 0.00 0.00 30.74 4.34
6365 9043 3.418913 TCAATGCCCGTGAACGCG 61.419 61.111 3.53 3.53 38.18 6.01
6370 9048 4.402528 CCCGGTCAATGCCCGTGA 62.403 66.667 1.07 0.00 43.98 4.35
6393 9071 4.935205 CGGATGTGGACTACAAGATTTGAA 59.065 41.667 0.00 0.00 43.77 2.69
6435 9113 9.555727 GTTGTATGCTTTAGTATGGATTTAGGA 57.444 33.333 0.00 0.00 0.00 2.94
6457 9135 3.004315 GTCCATTTGGTGATTCACGTTGT 59.996 43.478 10.56 0.00 34.83 3.32
6461 9139 4.875536 TCTATGTCCATTTGGTGATTCACG 59.124 41.667 10.56 0.00 34.83 4.35
6468 9146 5.327616 TGCATTTCTATGTCCATTTGGTG 57.672 39.130 0.00 0.00 34.12 4.17
6470 9148 7.816031 GGAATATGCATTTCTATGTCCATTTGG 59.184 37.037 3.54 0.00 34.12 3.28
6471 9149 7.539710 CGGAATATGCATTTCTATGTCCATTTG 59.460 37.037 3.54 0.00 34.12 2.32
6472 9150 7.448161 TCGGAATATGCATTTCTATGTCCATTT 59.552 33.333 3.54 0.00 34.12 2.32
6473 9151 6.942005 TCGGAATATGCATTTCTATGTCCATT 59.058 34.615 3.54 0.00 34.12 3.16
6488 9192 6.344500 AGATCTATTGGTGATCGGAATATGC 58.656 40.000 0.00 0.00 43.52 3.14
6491 9195 6.016555 TGGAGATCTATTGGTGATCGGAATA 58.983 40.000 0.00 0.00 43.52 1.75
6495 9199 4.607293 TTGGAGATCTATTGGTGATCGG 57.393 45.455 0.00 0.00 43.52 4.18
6518 9222 8.567104 GTGGATTATTTGAACTTTGGCAAATTT 58.433 29.630 13.89 14.20 40.68 1.82
6520 9224 7.222872 TGTGGATTATTTGAACTTTGGCAAAT 58.777 30.769 13.89 0.00 44.36 2.32
6521 9225 6.586344 TGTGGATTATTTGAACTTTGGCAAA 58.414 32.000 12.79 12.79 38.25 3.68
6522 9226 6.166984 TGTGGATTATTTGAACTTTGGCAA 57.833 33.333 0.00 0.00 0.00 4.52
6523 9227 5.798125 TGTGGATTATTTGAACTTTGGCA 57.202 34.783 0.00 0.00 0.00 4.92
6530 9234 7.457868 TCGTCGTTTATGTGGATTATTTGAAC 58.542 34.615 0.00 0.00 0.00 3.18
6535 9239 6.971527 TGTTCGTCGTTTATGTGGATTATT 57.028 33.333 0.00 0.00 0.00 1.40
6550 9254 7.074502 AGTAGTCTAGTTAAACTTGTTCGTCG 58.925 38.462 0.00 0.00 0.00 5.12
6583 9288 5.856986 TCTGACGTCTCTGTCTTTAAATTCG 59.143 40.000 17.92 0.00 39.64 3.34
6584 9289 6.183360 GCTCTGACGTCTCTGTCTTTAAATTC 60.183 42.308 17.92 0.00 39.64 2.17
6587 9292 4.278669 AGCTCTGACGTCTCTGTCTTTAAA 59.721 41.667 17.92 0.00 39.64 1.52
6594 9299 1.610363 TGAAGCTCTGACGTCTCTGT 58.390 50.000 17.92 0.00 0.00 3.41
6596 9301 2.163412 GTGATGAAGCTCTGACGTCTCT 59.837 50.000 17.92 5.80 0.00 3.10
6601 9306 2.094286 AGGAAGTGATGAAGCTCTGACG 60.094 50.000 0.00 0.00 0.00 4.35
6603 9308 2.165234 CGAGGAAGTGATGAAGCTCTGA 59.835 50.000 0.00 0.00 0.00 3.27
6644 9349 2.429571 TACAACAGCGCCGACGAC 60.430 61.111 2.29 0.00 43.93 4.34
6677 9382 4.767255 CCACCTCCTGCCGCAGAC 62.767 72.222 22.35 0.00 32.44 3.51
6682 9387 3.391665 GATGACCCACCTCCTGCCG 62.392 68.421 0.00 0.00 0.00 5.69
6683 9388 2.592308 GATGACCCACCTCCTGCC 59.408 66.667 0.00 0.00 0.00 4.85
6684 9389 2.187946 CGATGACCCACCTCCTGC 59.812 66.667 0.00 0.00 0.00 4.85
6685 9390 2.187946 GCGATGACCCACCTCCTG 59.812 66.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.