Multiple sequence alignment - TraesCS6A01G254100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G254100 chr6A 100.000 3266 0 0 1 3266 470211855 470215120 0.000000e+00 6032.0
1 TraesCS6A01G254100 chr6A 82.474 97 9 6 283 374 409796036 409795943 9.720000e-11 78.7
2 TraesCS6A01G254100 chr6B 95.077 2458 93 15 491 2943 489715534 489713100 0.000000e+00 3843.0
3 TraesCS6A01G254100 chr6B 85.895 475 55 6 27 495 489718386 489717918 2.260000e-136 496.0
4 TraesCS6A01G254100 chr6B 94.286 315 17 1 2952 3266 489713022 489712709 6.340000e-132 481.0
5 TraesCS6A01G254100 chr6D 94.730 2315 71 21 621 2907 331254897 331257188 0.000000e+00 3552.0
6 TraesCS6A01G254100 chr6D 87.726 497 52 7 1 495 331253508 331253997 3.660000e-159 571.0
7 TraesCS6A01G254100 chr6D 90.948 232 14 5 2944 3169 331258494 331258724 4.090000e-79 305.0
8 TraesCS6A01G254100 chr6D 90.511 137 10 3 491 626 331254600 331254734 9.310000e-41 178.0
9 TraesCS6A01G254100 chr6D 96.939 98 3 0 3169 3266 331258795 331258892 7.250000e-37 165.0
10 TraesCS6A01G254100 chr2B 84.979 1185 152 18 993 2161 607106563 607107737 0.000000e+00 1179.0
11 TraesCS6A01G254100 chr2D 84.810 1185 154 19 993 2161 515630047 515631221 0.000000e+00 1168.0
12 TraesCS6A01G254100 chr2A 84.193 1183 165 16 993 2161 659323642 659324816 0.000000e+00 1129.0
13 TraesCS6A01G254100 chr2A 81.818 88 15 1 287 374 24117743 24117657 4.520000e-09 73.1
14 TraesCS6A01G254100 chr4B 78.400 125 15 9 331 445 63222931 63222809 1.630000e-08 71.3
15 TraesCS6A01G254100 chr4A 86.364 66 5 4 207 272 731588049 731587988 5.850000e-08 69.4
16 TraesCS6A01G254100 chr1A 87.302 63 5 3 328 388 536351864 536351925 5.850000e-08 69.4
17 TraesCS6A01G254100 chr3A 87.500 56 5 2 331 384 459943701 459943646 2.720000e-06 63.9
18 TraesCS6A01G254100 chr5B 94.444 36 2 0 347 382 610872547 610872582 4.550000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G254100 chr6A 470211855 470215120 3265 False 6032.000000 6032 100.000000 1 3266 1 chr6A.!!$F1 3265
1 TraesCS6A01G254100 chr6B 489712709 489718386 5677 True 1606.666667 3843 91.752667 27 3266 3 chr6B.!!$R1 3239
2 TraesCS6A01G254100 chr6D 331253508 331258892 5384 False 954.200000 3552 92.170800 1 3266 5 chr6D.!!$F1 3265
3 TraesCS6A01G254100 chr2B 607106563 607107737 1174 False 1179.000000 1179 84.979000 993 2161 1 chr2B.!!$F1 1168
4 TraesCS6A01G254100 chr2D 515630047 515631221 1174 False 1168.000000 1168 84.810000 993 2161 1 chr2D.!!$F1 1168
5 TraesCS6A01G254100 chr2A 659323642 659324816 1174 False 1129.000000 1129 84.193000 993 2161 1 chr2A.!!$F1 1168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.250727 ACTACCCATGCGTTGCAACT 60.251 50.0 26.09 9.09 43.62 3.16 F
918 3575 0.365859 GTCGAATTCGCCTGTTCGTC 59.634 55.0 22.90 0.00 45.34 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 4455 1.219124 CAGCCCGTACATGACAGCT 59.781 57.895 0.0 2.18 37.71 4.24 R
2645 5322 0.663269 CTTGCACGCTGACACTACGA 60.663 55.000 0.0 0.00 0.00 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 6.039781 TCGAACCGTCTGTTTTAAGAAAAG 57.960 37.500 0.00 0.00 37.29 2.27
103 104 6.313411 TCGAACCGTCTGTTTTAAGAAAAGAA 59.687 34.615 0.00 0.00 37.29 2.52
106 107 9.297586 GAACCGTCTGTTTTAAGAAAAGAAAAT 57.702 29.630 0.00 0.00 37.29 1.82
220 221 0.250727 ACTACCCATGCGTTGCAACT 60.251 50.000 26.09 9.09 43.62 3.16
235 236 5.276270 GTTGCAACTGGAGCATACATATTG 58.724 41.667 22.36 0.00 42.33 1.90
255 256 9.859427 CATATTGTAGTGGTTCAACATCAATTT 57.141 29.630 0.00 0.00 32.29 1.82
259 260 8.226819 TGTAGTGGTTCAACATCAATTTTGTA 57.773 30.769 0.00 0.00 0.00 2.41
261 262 9.128107 GTAGTGGTTCAACATCAATTTTGTATG 57.872 33.333 0.00 0.00 0.00 2.39
319 322 7.437713 TGATTTGTGTATGGATAGAGGAAGT 57.562 36.000 0.00 0.00 0.00 3.01
372 375 9.844257 TTTTGGTAAGATTTGATTTGATTTGGT 57.156 25.926 0.00 0.00 0.00 3.67
373 376 9.844257 TTTGGTAAGATTTGATTTGATTTGGTT 57.156 25.926 0.00 0.00 0.00 3.67
374 377 9.844257 TTGGTAAGATTTGATTTGATTTGGTTT 57.156 25.926 0.00 0.00 0.00 3.27
390 393 9.066892 TGATTTGGTTTAAGTATGGATAGATGC 57.933 33.333 0.00 0.00 0.00 3.91
394 397 7.977818 TGGTTTAAGTATGGATAGATGCAGAT 58.022 34.615 0.00 0.00 0.00 2.90
395 398 8.439971 TGGTTTAAGTATGGATAGATGCAGATT 58.560 33.333 0.00 0.00 0.00 2.40
396 399 9.289782 GGTTTAAGTATGGATAGATGCAGATTT 57.710 33.333 0.00 0.00 0.00 2.17
443 452 7.115378 GGTTTGACTTGATTGAGTTAATGCAAG 59.885 37.037 13.39 13.39 38.48 4.01
445 454 6.902341 TGACTTGATTGAGTTAATGCAAGAC 58.098 36.000 18.14 14.61 37.36 3.01
446 455 5.931532 ACTTGATTGAGTTAATGCAAGACG 58.068 37.500 18.14 0.00 37.36 4.18
447 456 5.470098 ACTTGATTGAGTTAATGCAAGACGT 59.530 36.000 18.14 0.00 37.36 4.34
448 457 5.940192 TGATTGAGTTAATGCAAGACGTT 57.060 34.783 0.00 0.00 0.00 3.99
456 467 5.238650 AGTTAATGCAAGACGTTAGCTTTGT 59.761 36.000 14.65 0.00 37.88 2.83
504 2973 9.793259 TTGTTCCAAGTTACTCTGAGAAATATT 57.207 29.630 12.44 0.00 0.00 1.28
505 2974 9.793259 TGTTCCAAGTTACTCTGAGAAATATTT 57.207 29.630 12.44 0.00 0.00 1.40
619 3089 4.201812 CGCATACAACAATCTTGGTAGGTG 60.202 45.833 0.00 0.00 0.00 4.00
698 3336 1.308069 AACATGCTCATGGACCACGC 61.308 55.000 13.69 0.23 42.91 5.34
913 3570 1.956629 ATCCCGTCGAATTCGCCTGT 61.957 55.000 22.90 3.97 39.60 4.00
918 3575 0.365859 GTCGAATTCGCCTGTTCGTC 59.634 55.000 22.90 0.00 45.34 4.20
930 3587 2.352814 CCTGTTCGTCGTTCCATCTTCT 60.353 50.000 0.00 0.00 0.00 2.85
932 3589 1.390463 GTTCGTCGTTCCATCTTCTGC 59.610 52.381 0.00 0.00 0.00 4.26
936 3593 0.537188 TCGTTCCATCTTCTGCCTCC 59.463 55.000 0.00 0.00 0.00 4.30
939 3596 1.134250 GTTCCATCTTCTGCCTCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
941 3598 1.575788 TCCATCTTCTGCCTCCCTCTA 59.424 52.381 0.00 0.00 0.00 2.43
942 3599 2.180973 TCCATCTTCTGCCTCCCTCTAT 59.819 50.000 0.00 0.00 0.00 1.98
956 3614 2.179427 CCTCTATCTGTGTGGTGGTCA 58.821 52.381 0.00 0.00 0.00 4.02
957 3615 2.093973 CCTCTATCTGTGTGGTGGTCAC 60.094 54.545 0.00 0.00 46.23 3.67
966 3624 4.813346 GGTGGTCACCCAATTCGT 57.187 55.556 8.89 0.00 44.15 3.85
967 3625 3.030415 GGTGGTCACCCAATTCGTT 57.970 52.632 8.89 0.00 44.15 3.85
968 3626 1.324383 GGTGGTCACCCAATTCGTTT 58.676 50.000 8.89 0.00 44.15 3.60
977 3635 5.627780 GTCACCCAATTCGTTTGTGTTAATC 59.372 40.000 0.00 0.00 33.15 1.75
1119 3783 1.487231 CAAGACCTTCGCGAACGTG 59.513 57.895 24.73 16.54 41.18 4.49
1788 4455 0.463654 GGCTGTCCATGGCGTTCATA 60.464 55.000 6.96 0.00 34.12 2.15
1983 4650 4.373116 GAGCGCCTGTTCCACGGA 62.373 66.667 2.29 0.00 0.00 4.69
2274 4941 0.098728 CCAGCGCTTAAATTCCGGTG 59.901 55.000 7.50 4.69 46.38 4.94
2325 4994 1.954362 GCTCTCTCATCCACGCTGGT 61.954 60.000 4.33 0.00 39.03 4.00
2326 4995 0.534412 CTCTCTCATCCACGCTGGTT 59.466 55.000 4.33 0.00 39.03 3.67
2327 4996 1.751351 CTCTCTCATCCACGCTGGTTA 59.249 52.381 4.33 0.00 39.03 2.85
2328 4997 2.166459 CTCTCTCATCCACGCTGGTTAA 59.834 50.000 4.33 0.00 39.03 2.01
2329 4998 2.094182 TCTCTCATCCACGCTGGTTAAC 60.094 50.000 0.00 0.00 39.03 2.01
2338 5007 2.415512 CACGCTGGTTAACTTAAGCTCC 59.584 50.000 19.21 0.96 37.10 4.70
2362 5031 2.842485 CGTAGTAGTTTTCCACGCTACG 59.158 50.000 13.49 13.49 45.98 3.51
2371 5046 2.494918 CACGCTACGAGAAGGGGG 59.505 66.667 0.00 0.00 33.91 5.40
2392 5067 1.959985 TCAGCGGATCAGAGAGGAATC 59.040 52.381 0.00 0.00 0.00 2.52
2645 5322 7.718272 TTTCAGTATTTAGTTACTTGTGCGT 57.282 32.000 0.00 0.00 29.93 5.24
2694 5371 3.510531 TGTGTGTGGTTAATTGGGCTA 57.489 42.857 0.00 0.00 0.00 3.93
2757 5440 6.008331 ACCATTACGTGATACTCCTAGCATA 58.992 40.000 0.00 0.00 0.00 3.14
2758 5441 6.492429 ACCATTACGTGATACTCCTAGCATAA 59.508 38.462 0.00 0.00 0.00 1.90
2759 5442 7.014905 ACCATTACGTGATACTCCTAGCATAAA 59.985 37.037 0.00 0.00 0.00 1.40
2760 5443 7.328737 CCATTACGTGATACTCCTAGCATAAAC 59.671 40.741 0.00 0.00 0.00 2.01
2761 5444 5.847111 ACGTGATACTCCTAGCATAAACA 57.153 39.130 0.00 0.00 0.00 2.83
2762 5445 6.406692 ACGTGATACTCCTAGCATAAACAT 57.593 37.500 0.00 0.00 0.00 2.71
2806 5489 1.131126 CTATGTCCCAAGCAAGCAACG 59.869 52.381 0.00 0.00 0.00 4.10
2807 5490 2.050077 GTCCCAAGCAAGCAACGC 60.050 61.111 0.00 0.00 0.00 4.84
2825 5508 1.882352 CGCAAGCTTGTAAAGGGTCCT 60.882 52.381 26.55 0.00 46.35 3.85
2882 5565 9.829507 TTTATTTGACTTTGTCCATTGTTTCAT 57.170 25.926 0.00 0.00 0.00 2.57
2907 6827 4.004314 CAGACGTTCCTGAGAGAGTTCTA 58.996 47.826 0.00 0.00 36.29 2.10
2918 6838 4.023963 TGAGAGAGTTCTATTACGGCATCG 60.024 45.833 0.00 0.00 36.69 3.84
2931 6851 2.951642 ACGGCATCGATCAATTGGATTT 59.048 40.909 5.42 0.00 36.00 2.17
2932 6852 3.243168 ACGGCATCGATCAATTGGATTTG 60.243 43.478 5.42 0.00 36.00 2.32
2933 6853 3.003585 CGGCATCGATCAATTGGATTTGA 59.996 43.478 5.42 1.41 39.77 2.69
2934 6854 4.543692 GGCATCGATCAATTGGATTTGAG 58.456 43.478 5.42 0.00 38.90 3.02
2935 6855 4.276678 GGCATCGATCAATTGGATTTGAGA 59.723 41.667 5.42 0.00 38.90 3.27
2937 6857 6.444633 GCATCGATCAATTGGATTTGAGATT 58.555 36.000 5.42 0.00 38.90 2.40
2938 6858 6.581542 GCATCGATCAATTGGATTTGAGATTC 59.418 38.462 5.42 0.00 38.90 2.52
2939 6859 6.291067 TCGATCAATTGGATTTGAGATTCG 57.709 37.500 5.42 0.00 38.90 3.34
2940 6860 4.908156 CGATCAATTGGATTTGAGATTCGC 59.092 41.667 5.42 0.00 38.90 4.70
2941 6861 5.504501 CGATCAATTGGATTTGAGATTCGCA 60.505 40.000 5.42 0.00 38.90 5.10
2942 6862 5.840243 TCAATTGGATTTGAGATTCGCAT 57.160 34.783 5.42 0.00 32.07 4.73
2943 6863 5.824429 TCAATTGGATTTGAGATTCGCATC 58.176 37.500 5.42 0.00 32.07 3.91
2944 6864 5.357596 TCAATTGGATTTGAGATTCGCATCA 59.642 36.000 5.42 0.00 32.07 3.07
2945 6865 4.621068 TTGGATTTGAGATTCGCATCAC 57.379 40.909 0.00 0.00 0.00 3.06
2946 6866 2.609002 TGGATTTGAGATTCGCATCACG 59.391 45.455 0.00 0.00 45.62 4.35
2947 6867 2.032549 GGATTTGAGATTCGCATCACGG 60.033 50.000 0.00 0.00 43.89 4.94
2949 6869 2.378445 TTGAGATTCGCATCACGGAA 57.622 45.000 0.00 0.00 43.89 4.30
2955 6943 5.633601 TGAGATTCGCATCACGGAATATTAC 59.366 40.000 0.00 0.00 43.89 1.89
2972 6960 7.867909 GGAATATTACGAGTTCTCATGACATGA 59.132 37.037 17.09 17.09 37.76 3.07
2979 6967 8.498054 ACGAGTTCTCATGACATGATATTTTT 57.502 30.769 18.28 3.29 38.85 1.94
2989 6977 7.634671 TGACATGATATTTTTGTGCTGATCT 57.365 32.000 0.00 0.00 0.00 2.75
2991 6979 9.346005 TGACATGATATTTTTGTGCTGATCTAT 57.654 29.630 0.00 0.00 0.00 1.98
3004 6992 6.598850 TGTGCTGATCTATTTACATTCTGCAA 59.401 34.615 4.69 0.00 41.05 4.08
3023 7011 2.555757 CAAGCAGAAGGAACAGGGAAAG 59.444 50.000 0.00 0.00 0.00 2.62
3210 7269 5.450376 AAAGCACAACGTCGTTATCATAG 57.550 39.130 10.86 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.061357 TCCGCGGTCAAATATTCATACA 57.939 40.909 27.15 0.00 0.00 2.29
101 102 9.549509 TTGTGTTCGTATATGCTTTACATTTTC 57.450 29.630 0.00 0.00 40.38 2.29
103 104 8.941977 TCTTGTGTTCGTATATGCTTTACATTT 58.058 29.630 0.00 0.00 40.38 2.32
106 107 7.385478 TGTTCTTGTGTTCGTATATGCTTTACA 59.615 33.333 0.00 0.00 0.00 2.41
113 114 7.738345 TCACATTGTTCTTGTGTTCGTATATG 58.262 34.615 3.98 0.00 43.86 1.78
116 117 6.612247 TTCACATTGTTCTTGTGTTCGTAT 57.388 33.333 3.98 0.00 43.86 3.06
220 221 5.887214 ACCACTACAATATGTATGCTCCA 57.113 39.130 0.00 0.00 31.66 3.86
235 236 9.128107 CATACAAAATTGATGTTGAACCACTAC 57.872 33.333 0.00 0.00 32.27 2.73
255 256 7.856145 TGTGTGCAATGTATATGTCATACAA 57.144 32.000 0.00 0.00 37.93 2.41
259 260 7.754851 ATGATGTGTGCAATGTATATGTCAT 57.245 32.000 0.00 0.00 0.00 3.06
261 262 8.938906 TCATATGATGTGTGCAATGTATATGTC 58.061 33.333 0.00 0.00 32.15 3.06
302 305 7.733773 TTCTTTGACTTCCTCTATCCATACA 57.266 36.000 0.00 0.00 0.00 2.29
409 418 7.785033 ACTCAATCAAGTCAAACCAAATCTTT 58.215 30.769 0.00 0.00 0.00 2.52
418 427 7.862372 TCTTGCATTAACTCAATCAAGTCAAAC 59.138 33.333 0.00 0.00 35.50 2.93
424 433 5.931532 ACGTCTTGCATTAACTCAATCAAG 58.068 37.500 0.00 0.00 35.41 3.02
443 452 6.529463 TGGTACTTTTACAAAGCTAACGTC 57.471 37.500 0.00 0.00 0.00 4.34
445 454 8.071368 TCAAATGGTACTTTTACAAAGCTAACG 58.929 33.333 0.00 0.00 0.00 3.18
446 455 9.908152 ATCAAATGGTACTTTTACAAAGCTAAC 57.092 29.630 0.00 0.00 0.00 2.34
530 2999 3.265479 ACAGCTAGGAGCATTTTCTTCCT 59.735 43.478 0.64 0.00 45.56 3.36
589 3059 4.065423 AGATTGTTGTATGCGTTTGACG 57.935 40.909 0.00 0.00 45.88 4.35
619 3089 2.543238 GGCGGTGTATGAGTAGTACAGC 60.543 54.545 2.52 5.64 43.49 4.40
666 3304 1.860326 AGCATGTTTTGTTTTCTGCGC 59.140 42.857 0.00 0.00 34.89 6.09
698 3336 5.789643 AAATCGTGGGAAAATATCATGGG 57.210 39.130 0.00 0.00 0.00 4.00
733 3390 1.976474 GCCTGCCATCGTGGGAAAA 60.976 57.895 6.23 0.00 37.44 2.29
878 3535 2.538449 CGGGATTTGTATTCGTCTTCCG 59.462 50.000 0.00 0.00 38.13 4.30
890 3547 0.725117 GCGAATTCGACGGGATTTGT 59.275 50.000 31.01 0.00 43.02 2.83
891 3548 0.027586 GGCGAATTCGACGGGATTTG 59.972 55.000 31.01 0.00 43.02 2.32
892 3549 2.390427 GGCGAATTCGACGGGATTT 58.610 52.632 31.01 0.00 43.02 2.17
893 3550 4.120085 GGCGAATTCGACGGGATT 57.880 55.556 31.01 0.00 43.02 3.01
913 3570 1.671850 GGCAGAAGATGGAACGACGAA 60.672 52.381 0.00 0.00 0.00 3.85
918 3575 0.462759 GGGAGGCAGAAGATGGAACG 60.463 60.000 0.00 0.00 0.00 3.95
930 3587 1.489481 CACACAGATAGAGGGAGGCA 58.511 55.000 0.00 0.00 0.00 4.75
932 3589 1.759445 CACCACACAGATAGAGGGAGG 59.241 57.143 0.00 0.00 0.00 4.30
936 3593 2.093973 GTGACCACCACACAGATAGAGG 60.094 54.545 0.00 0.00 45.03 3.69
958 3616 5.922546 TCGAGATTAACACAAACGAATTGG 58.077 37.500 9.76 0.00 43.66 3.16
959 3617 7.744276 TGAATCGAGATTAACACAAACGAATTG 59.256 33.333 0.00 0.00 44.95 2.32
960 3618 7.802738 TGAATCGAGATTAACACAAACGAATT 58.197 30.769 0.00 0.00 32.48 2.17
961 3619 7.359262 TGAATCGAGATTAACACAAACGAAT 57.641 32.000 0.00 0.00 32.48 3.34
962 3620 6.772770 TGAATCGAGATTAACACAAACGAA 57.227 33.333 0.00 0.00 32.48 3.85
963 3621 6.772770 TTGAATCGAGATTAACACAAACGA 57.227 33.333 0.00 0.00 0.00 3.85
964 3622 7.636363 GATTGAATCGAGATTAACACAAACG 57.364 36.000 0.00 0.00 0.00 3.60
1119 3783 2.740714 GCCGACCACAGCGATGAAC 61.741 63.158 8.12 0.00 0.00 3.18
1788 4455 1.219124 CAGCCCGTACATGACAGCT 59.781 57.895 0.00 2.18 37.71 4.24
2274 4941 2.354821 AGCAAATTAATCCTCGGCGAAC 59.645 45.455 12.13 0.00 0.00 3.95
2338 5007 0.986992 CGTGGAAAACTACTACGCGG 59.013 55.000 12.47 0.00 35.77 6.46
2362 5031 2.034048 GATCCGCTGACCCCCTTCTC 62.034 65.000 0.00 0.00 0.00 2.87
2371 5046 1.107114 TTCCTCTCTGATCCGCTGAC 58.893 55.000 0.00 0.00 0.00 3.51
2392 5067 0.745845 ACAAATAGCTGAGCCAGGCG 60.746 55.000 5.55 0.00 31.21 5.52
2645 5322 0.663269 CTTGCACGCTGACACTACGA 60.663 55.000 0.00 0.00 0.00 3.43
2694 5371 1.074775 TCGTCCCAATTGCTTGCCT 59.925 52.632 0.00 0.00 0.00 4.75
2758 5441 6.774354 ACAGTTCGAAACGTATACAATGTT 57.226 33.333 0.00 0.00 39.05 2.71
2759 5442 6.201425 ACAACAGTTCGAAACGTATACAATGT 59.799 34.615 0.00 0.00 36.23 2.71
2760 5443 6.586751 ACAACAGTTCGAAACGTATACAATG 58.413 36.000 0.00 0.00 36.23 2.82
2761 5444 6.774354 ACAACAGTTCGAAACGTATACAAT 57.226 33.333 0.00 0.00 36.23 2.71
2762 5445 6.917477 AGTACAACAGTTCGAAACGTATACAA 59.083 34.615 0.00 0.00 36.23 2.41
2806 5489 1.541588 CAGGACCCTTTACAAGCTTGC 59.458 52.381 26.27 7.11 0.00 4.01
2807 5490 3.140325 TCAGGACCCTTTACAAGCTTG 57.860 47.619 24.84 24.84 0.00 4.01
2882 5565 2.155279 CTCTCTCAGGAACGTCTGTCA 58.845 52.381 4.38 0.00 36.25 3.58
2907 6827 3.738982 TCCAATTGATCGATGCCGTAAT 58.261 40.909 0.54 0.00 37.05 1.89
2918 6838 5.824429 TGCGAATCTCAAATCCAATTGATC 58.176 37.500 7.12 0.00 38.55 2.92
2931 6851 2.602257 ATTCCGTGATGCGAATCTCA 57.398 45.000 4.68 0.00 44.77 3.27
2932 6852 5.220043 CGTAATATTCCGTGATGCGAATCTC 60.220 44.000 4.68 0.00 44.77 2.75
2933 6853 4.621460 CGTAATATTCCGTGATGCGAATCT 59.379 41.667 4.68 0.00 44.77 2.40
2934 6854 4.619760 TCGTAATATTCCGTGATGCGAATC 59.380 41.667 0.00 0.00 44.77 2.52
2935 6855 4.552355 TCGTAATATTCCGTGATGCGAAT 58.448 39.130 0.11 0.00 44.77 3.34
2937 6857 3.004002 ACTCGTAATATTCCGTGATGCGA 59.996 43.478 9.12 0.00 44.77 5.10
2938 6858 3.305964 ACTCGTAATATTCCGTGATGCG 58.694 45.455 9.12 0.00 40.95 4.73
2939 6859 4.982916 AGAACTCGTAATATTCCGTGATGC 59.017 41.667 9.12 0.00 0.00 3.91
2940 6860 6.206498 TGAGAACTCGTAATATTCCGTGATG 58.794 40.000 9.12 0.00 0.00 3.07
2941 6861 6.387041 TGAGAACTCGTAATATTCCGTGAT 57.613 37.500 9.12 0.00 0.00 3.06
2942 6862 5.823209 TGAGAACTCGTAATATTCCGTGA 57.177 39.130 9.12 0.00 0.00 4.35
2943 6863 6.142480 GTCATGAGAACTCGTAATATTCCGTG 59.858 42.308 0.00 0.89 0.00 4.94
2944 6864 6.183360 TGTCATGAGAACTCGTAATATTCCGT 60.183 38.462 0.00 0.00 0.00 4.69
2945 6865 6.206498 TGTCATGAGAACTCGTAATATTCCG 58.794 40.000 0.00 0.00 0.00 4.30
2946 6866 7.867909 TCATGTCATGAGAACTCGTAATATTCC 59.132 37.037 11.62 0.00 33.59 3.01
2947 6867 8.803201 TCATGTCATGAGAACTCGTAATATTC 57.197 34.615 11.62 0.00 33.59 1.75
2955 6943 8.393366 ACAAAAATATCATGTCATGAGAACTCG 58.607 33.333 19.86 8.84 43.53 4.18
2979 6967 6.114767 TGCAGAATGTAAATAGATCAGCACA 58.885 36.000 0.00 0.00 39.31 4.57
2989 6977 6.179756 TCCTTCTGCTTGCAGAATGTAAATA 58.820 36.000 30.26 13.87 41.07 1.40
2991 6979 4.397420 TCCTTCTGCTTGCAGAATGTAAA 58.603 39.130 30.26 14.44 41.07 2.01
2994 6982 2.555757 GTTCCTTCTGCTTGCAGAATGT 59.444 45.455 30.26 0.00 40.04 2.71
3004 6992 1.546548 GCTTTCCCTGTTCCTTCTGCT 60.547 52.381 0.00 0.00 0.00 4.24
3069 7057 4.814294 CGACCACGCAGGGCTACC 62.814 72.222 0.00 0.00 46.64 3.18
3083 7071 1.209640 GTGAGGACGACTGACCGAC 59.790 63.158 0.00 0.00 34.90 4.79
3102 7090 3.967401 GAAGAGATACTTCGCCTGGTAC 58.033 50.000 0.00 0.00 44.15 3.34
3210 7269 2.099062 CAGCTTGGATCGTTGCGC 59.901 61.111 0.00 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.