Multiple sequence alignment - TraesCS6A01G253700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G253700 chr6A 100.000 4341 0 0 1 4341 469434838 469430498 0.000000e+00 8017.0
1 TraesCS6A01G253700 chr6A 84.932 292 42 1 1 292 215850386 215850675 1.180000e-75 294.0
2 TraesCS6A01G253700 chr6A 87.500 80 10 0 2301 2380 570383488 570383409 4.620000e-15 93.5
3 TraesCS6A01G253700 chr6B 91.229 3409 182 41 292 3635 490253452 490256808 0.000000e+00 4530.0
4 TraesCS6A01G253700 chr6B 85.629 668 68 11 3679 4341 490256810 490257454 0.000000e+00 676.0
5 TraesCS6A01G253700 chr6D 93.072 2656 104 26 674 3282 330159454 330156832 0.000000e+00 3812.0
6 TraesCS6A01G253700 chr6D 92.252 413 30 2 101 513 330160239 330159829 6.260000e-163 584.0
7 TraesCS6A01G253700 chr6D 90.130 385 36 2 3912 4294 330114337 330113953 2.330000e-137 499.0
8 TraesCS6A01G253700 chr6D 86.942 291 38 0 2 292 78466682 78466392 1.160000e-85 327.0
9 TraesCS6A01G253700 chr6D 87.023 262 26 6 3376 3635 330114765 330114510 5.490000e-74 289.0
10 TraesCS6A01G253700 chr6D 93.151 73 4 1 3308 3380 330115940 330115869 5.940000e-19 106.0
11 TraesCS6A01G253700 chr6D 86.047 86 12 0 2301 2386 425903630 425903545 4.620000e-15 93.5
12 TraesCS6A01G253700 chr2D 85.219 433 58 5 2499 2928 516370438 516370867 1.430000e-119 440.0
13 TraesCS6A01G253700 chr2D 85.135 148 20 2 1994 2140 14106349 14106203 2.700000e-32 150.0
14 TraesCS6A01G253700 chr2B 84.758 433 60 5 2499 2928 607953235 607953664 3.100000e-116 429.0
15 TraesCS6A01G253700 chr2B 83.108 148 23 2 1994 2140 25687528 25687382 2.720000e-27 134.0
16 TraesCS6A01G253700 chr2B 86.735 98 13 0 2286 2383 25687084 25686987 4.590000e-20 110.0
17 TraesCS6A01G253700 chr2A 85.158 411 55 5 2499 2906 660224041 660224448 2.410000e-112 416.0
18 TraesCS6A01G253700 chr2A 78.635 337 59 11 2516 2844 125900754 125900423 1.220000e-50 211.0
19 TraesCS6A01G253700 chr2A 85.135 148 20 2 1994 2140 16477998 16477852 2.700000e-32 150.0
20 TraesCS6A01G253700 chr2A 97.222 36 0 1 3643 3678 699870115 699870149 4.690000e-05 60.2
21 TraesCS6A01G253700 chr4B 88.581 289 32 1 4 292 483502268 483501981 2.480000e-92 350.0
22 TraesCS6A01G253700 chr4B 97.674 43 1 0 2333 2375 234387 234345 1.670000e-09 75.0
23 TraesCS6A01G253700 chr5D 87.543 289 34 1 1 289 99346733 99347019 2.500000e-87 333.0
24 TraesCS6A01G253700 chr7B 86.301 292 40 0 1 292 421692629 421692920 7.010000e-83 318.0
25 TraesCS6A01G253700 chr7B 85.172 290 43 0 3 292 695503798 695504087 9.130000e-77 298.0
26 TraesCS6A01G253700 chr7B 85.833 240 28 6 2514 2750 565577309 565577545 2.590000e-62 250.0
27 TraesCS6A01G253700 chr7B 78.696 230 38 5 1575 1803 730181129 730180910 4.530000e-30 143.0
28 TraesCS6A01G253700 chr7B 97.436 39 1 0 3643 3681 144728677 144728715 2.800000e-07 67.6
29 TraesCS6A01G253700 chr7B 95.000 40 1 1 3643 3681 527966517 527966556 1.300000e-05 62.1
30 TraesCS6A01G253700 chr3D 86.301 292 40 0 1 292 467495536 467495245 7.010000e-83 318.0
31 TraesCS6A01G253700 chr3D 97.222 36 0 1 3643 3678 23142455 23142489 4.690000e-05 60.2
32 TraesCS6A01G253700 chr4A 84.932 292 42 1 1 292 554087035 554087324 1.180000e-75 294.0
33 TraesCS6A01G253700 chr4A 97.674 43 1 0 2333 2375 193726 193684 1.670000e-09 75.0
34 TraesCS6A01G253700 chr7A 88.776 196 20 2 2514 2708 608359403 608359597 5.610000e-59 239.0
35 TraesCS6A01G253700 chr7A 77.391 230 41 3 1575 1803 724137187 724136968 4.560000e-25 126.0
36 TraesCS6A01G253700 chr7A 95.349 43 2 0 2335 2377 465377114 465377156 7.790000e-08 69.4
37 TraesCS6A01G253700 chr7A 92.500 40 2 1 3645 3684 713172435 713172397 6.060000e-04 56.5
38 TraesCS6A01G253700 chr7D 88.265 196 21 2 2514 2708 528080135 528080329 2.610000e-57 233.0
39 TraesCS6A01G253700 chr7D 100.000 32 0 0 3643 3674 588090417 588090386 4.690000e-05 60.2
40 TraesCS6A01G253700 chrUn 76.623 308 62 9 2632 2934 92744492 92744190 1.250000e-35 161.0
41 TraesCS6A01G253700 chrUn 76.957 230 42 3 1575 1803 92746368 92746149 2.120000e-23 121.0
42 TraesCS6A01G253700 chr4D 97.674 43 1 0 2333 2375 464280 464238 1.670000e-09 75.0
43 TraesCS6A01G253700 chr3A 97.368 38 0 1 3643 3680 747736749 747736713 3.620000e-06 63.9
44 TraesCS6A01G253700 chr1A 97.297 37 1 0 3643 3679 495592129 495592165 3.620000e-06 63.9
45 TraesCS6A01G253700 chr1D 100.000 32 0 0 3643 3674 470808526 470808495 4.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G253700 chr6A 469430498 469434838 4340 True 8017 8017 100.000000 1 4341 1 chr6A.!!$R1 4340
1 TraesCS6A01G253700 chr6B 490253452 490257454 4002 False 2603 4530 88.429000 292 4341 2 chr6B.!!$F1 4049
2 TraesCS6A01G253700 chr6D 330156832 330160239 3407 True 2198 3812 92.662000 101 3282 2 chr6D.!!$R4 3181
3 TraesCS6A01G253700 chr6D 330113953 330115940 1987 True 298 499 90.101333 3308 4294 3 chr6D.!!$R3 986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.035630 CAAAGGACTGGGAGGAGCTG 60.036 60.0 0.00 0.00 0.00 4.24 F
80 81 0.043940 AGGACTGGGAGGAGCTGAAT 59.956 55.0 0.00 0.00 0.00 2.57 F
81 82 0.179936 GGACTGGGAGGAGCTGAATG 59.820 60.0 0.00 0.00 0.00 2.67 F
769 1041 0.246086 ACAGTGTCAGCAGCTAGAGC 59.754 55.0 0.00 0.00 42.49 4.09 F
1033 1310 0.320683 GCCCAAAGTCACATTTGCCC 60.321 55.0 0.00 0.00 38.57 5.36 F
2207 2526 0.743097 ACGGGGATAGCTAACACGAC 59.257 55.0 24.55 0.67 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 2096 0.031585 GGTTCGGGTTGACCAAAAGC 59.968 55.000 2.12 1.95 40.22 3.51 R
1930 2213 1.841663 AACGTGCGTGCCAATCACTC 61.842 55.000 0.00 0.00 43.46 3.51 R
2088 2394 1.202533 CCCTTGGCCATGTACTCGTAG 60.203 57.143 6.09 0.00 0.00 3.51 R
2457 2777 0.248336 TAGGTTAGACGTGCGCGATG 60.248 55.000 28.73 2.91 42.00 3.84 R
2462 2782 0.529378 AGGGTTAGGTTAGACGTGCG 59.471 55.000 0.00 0.00 0.00 5.34 R
3811 5285 0.035439 GATCGTGTGGGGACAACCAT 60.035 55.000 0.00 0.00 46.06 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.645667 TCGATCGAATCAAAACAGTGTG 57.354 40.909 16.99 0.00 0.00 3.82
22 23 3.431912 TCGATCGAATCAAAACAGTGTGG 59.568 43.478 16.99 0.00 0.00 4.17
23 24 3.186409 CGATCGAATCAAAACAGTGTGGT 59.814 43.478 10.26 0.00 0.00 4.16
24 25 4.319477 CGATCGAATCAAAACAGTGTGGTT 60.319 41.667 10.26 0.00 0.00 3.67
25 26 4.285807 TCGAATCAAAACAGTGTGGTTG 57.714 40.909 11.89 11.89 0.00 3.77
26 27 3.692101 TCGAATCAAAACAGTGTGGTTGT 59.308 39.130 15.82 2.61 0.00 3.32
27 28 3.790820 CGAATCAAAACAGTGTGGTTGTG 59.209 43.478 15.82 0.00 37.34 3.33
28 29 2.645730 TCAAAACAGTGTGGTTGTGC 57.354 45.000 15.82 0.00 36.21 4.57
29 30 1.203523 TCAAAACAGTGTGGTTGTGCC 59.796 47.619 15.82 0.00 36.21 5.01
30 31 1.067283 CAAAACAGTGTGGTTGTGCCA 60.067 47.619 0.00 0.00 46.95 4.92
37 38 3.586543 TGGTTGTGCCAGATCCCA 58.413 55.556 0.00 0.00 43.61 4.37
38 39 1.074775 TGGTTGTGCCAGATCCCAC 59.925 57.895 0.00 0.00 43.61 4.61
39 40 1.678970 GGTTGTGCCAGATCCCACC 60.679 63.158 6.37 0.00 37.17 4.61
40 41 1.074775 GTTGTGCCAGATCCCACCA 59.925 57.895 6.37 0.00 0.00 4.17
41 42 0.323725 GTTGTGCCAGATCCCACCAT 60.324 55.000 6.37 0.00 0.00 3.55
42 43 1.064758 GTTGTGCCAGATCCCACCATA 60.065 52.381 6.37 0.00 0.00 2.74
43 44 1.294041 TGTGCCAGATCCCACCATAA 58.706 50.000 6.37 0.00 0.00 1.90
44 45 1.852309 TGTGCCAGATCCCACCATAAT 59.148 47.619 6.37 0.00 0.00 1.28
45 46 2.158623 TGTGCCAGATCCCACCATAATC 60.159 50.000 6.37 0.00 0.00 1.75
46 47 1.072173 TGCCAGATCCCACCATAATCG 59.928 52.381 0.00 0.00 0.00 3.34
47 48 1.347707 GCCAGATCCCACCATAATCGA 59.652 52.381 0.00 0.00 0.00 3.59
48 49 2.224523 GCCAGATCCCACCATAATCGAA 60.225 50.000 0.00 0.00 0.00 3.71
49 50 3.668447 CCAGATCCCACCATAATCGAAG 58.332 50.000 0.00 0.00 0.00 3.79
50 51 3.071602 CCAGATCCCACCATAATCGAAGT 59.928 47.826 0.00 0.00 0.00 3.01
51 52 4.310769 CAGATCCCACCATAATCGAAGTC 58.689 47.826 0.00 0.00 0.00 3.01
52 53 3.325135 AGATCCCACCATAATCGAAGTCC 59.675 47.826 0.00 0.00 0.00 3.85
53 54 1.766496 TCCCACCATAATCGAAGTCCC 59.234 52.381 0.00 0.00 0.00 4.46
54 55 1.540363 CCCACCATAATCGAAGTCCCG 60.540 57.143 0.00 0.00 0.00 5.14
55 56 1.411246 CCACCATAATCGAAGTCCCGA 59.589 52.381 0.00 0.00 43.16 5.14
61 62 3.853104 ATCGAAGTCCCGATGCAAA 57.147 47.368 0.00 0.00 46.22 3.68
62 63 1.656652 ATCGAAGTCCCGATGCAAAG 58.343 50.000 0.00 0.00 46.22 2.77
63 64 0.391130 TCGAAGTCCCGATGCAAAGG 60.391 55.000 0.00 0.00 33.14 3.11
64 65 0.391130 CGAAGTCCCGATGCAAAGGA 60.391 55.000 11.88 5.57 0.00 3.36
67 68 2.471255 GTCCCGATGCAAAGGACTG 58.529 57.895 20.28 3.44 45.49 3.51
68 69 1.026718 GTCCCGATGCAAAGGACTGG 61.027 60.000 20.28 3.42 45.49 4.00
69 70 1.750399 CCCGATGCAAAGGACTGGG 60.750 63.158 11.88 2.17 0.00 4.45
70 71 1.299648 CCGATGCAAAGGACTGGGA 59.700 57.895 4.96 0.00 0.00 4.37
71 72 0.745845 CCGATGCAAAGGACTGGGAG 60.746 60.000 4.96 0.00 0.00 4.30
72 73 0.745845 CGATGCAAAGGACTGGGAGG 60.746 60.000 0.00 0.00 0.00 4.30
73 74 0.620556 GATGCAAAGGACTGGGAGGA 59.379 55.000 0.00 0.00 0.00 3.71
74 75 0.622665 ATGCAAAGGACTGGGAGGAG 59.377 55.000 0.00 0.00 0.00 3.69
75 76 1.377856 GCAAAGGACTGGGAGGAGC 60.378 63.158 0.00 0.00 0.00 4.70
76 77 1.846712 GCAAAGGACTGGGAGGAGCT 61.847 60.000 0.00 0.00 0.00 4.09
77 78 0.035630 CAAAGGACTGGGAGGAGCTG 60.036 60.000 0.00 0.00 0.00 4.24
78 79 0.178891 AAAGGACTGGGAGGAGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
79 80 0.178891 AAGGACTGGGAGGAGCTGAA 60.179 55.000 0.00 0.00 0.00 3.02
80 81 0.043940 AGGACTGGGAGGAGCTGAAT 59.956 55.000 0.00 0.00 0.00 2.57
81 82 0.179936 GGACTGGGAGGAGCTGAATG 59.820 60.000 0.00 0.00 0.00 2.67
82 83 1.198713 GACTGGGAGGAGCTGAATGA 58.801 55.000 0.00 0.00 0.00 2.57
83 84 1.767681 GACTGGGAGGAGCTGAATGAT 59.232 52.381 0.00 0.00 0.00 2.45
84 85 2.968574 GACTGGGAGGAGCTGAATGATA 59.031 50.000 0.00 0.00 0.00 2.15
85 86 2.971330 ACTGGGAGGAGCTGAATGATAG 59.029 50.000 0.00 0.00 0.00 2.08
86 87 3.237746 CTGGGAGGAGCTGAATGATAGA 58.762 50.000 0.00 0.00 0.00 1.98
87 88 3.839490 CTGGGAGGAGCTGAATGATAGAT 59.161 47.826 0.00 0.00 0.00 1.98
88 89 4.237843 TGGGAGGAGCTGAATGATAGATT 58.762 43.478 0.00 0.00 0.00 2.40
89 90 4.041321 TGGGAGGAGCTGAATGATAGATTG 59.959 45.833 0.00 0.00 0.00 2.67
90 91 4.002316 GGAGGAGCTGAATGATAGATTGC 58.998 47.826 0.00 0.00 0.00 3.56
91 92 4.002316 GAGGAGCTGAATGATAGATTGCC 58.998 47.826 0.00 0.00 0.00 4.52
92 93 3.393609 AGGAGCTGAATGATAGATTGCCA 59.606 43.478 0.00 0.00 0.00 4.92
93 94 3.752222 GGAGCTGAATGATAGATTGCCAG 59.248 47.826 0.00 0.00 0.00 4.85
94 95 4.504514 GGAGCTGAATGATAGATTGCCAGA 60.505 45.833 0.00 0.00 0.00 3.86
95 96 5.045012 AGCTGAATGATAGATTGCCAGAA 57.955 39.130 0.00 0.00 0.00 3.02
96 97 4.820716 AGCTGAATGATAGATTGCCAGAAC 59.179 41.667 0.00 0.00 0.00 3.01
97 98 4.820716 GCTGAATGATAGATTGCCAGAACT 59.179 41.667 0.00 0.00 0.00 3.01
98 99 5.994054 GCTGAATGATAGATTGCCAGAACTA 59.006 40.000 0.00 0.00 0.00 2.24
99 100 6.073331 GCTGAATGATAGATTGCCAGAACTAC 60.073 42.308 0.00 0.00 0.00 2.73
108 109 1.972198 CCAGAACTACGAGCCACCA 59.028 57.895 0.00 0.00 0.00 4.17
112 113 0.458716 GAACTACGAGCCACCAGAGC 60.459 60.000 0.00 0.00 0.00 4.09
124 125 1.181741 ACCAGAGCGCAGACAGAAGA 61.182 55.000 11.47 0.00 0.00 2.87
125 126 0.735632 CCAGAGCGCAGACAGAAGAC 60.736 60.000 11.47 0.00 0.00 3.01
189 190 1.376037 CAAGCCACCCTCTCCGTTC 60.376 63.158 0.00 0.00 0.00 3.95
202 203 2.760159 CCGTTCGCAATCCGCCAAT 61.760 57.895 0.00 0.00 37.30 3.16
203 204 1.583451 CGTTCGCAATCCGCCAATG 60.583 57.895 0.00 0.00 37.30 2.82
213 214 0.546122 TCCGCCAATGCCATCTAGTT 59.454 50.000 0.00 0.00 0.00 2.24
240 241 2.609350 GCAATGTTCATGCGTTTGGAT 58.391 42.857 0.00 0.00 33.57 3.41
250 251 5.125356 TCATGCGTTTGGATGACATAATCT 58.875 37.500 0.00 0.00 46.49 2.40
251 252 5.589855 TCATGCGTTTGGATGACATAATCTT 59.410 36.000 0.00 0.00 46.49 2.40
261 262 2.846206 TGACATAATCTTGAGGCCACCT 59.154 45.455 5.01 0.00 36.03 4.00
266 267 2.725221 ATCTTGAGGCCACCTTGATC 57.275 50.000 5.01 0.00 31.76 2.92
277 278 2.594541 CCTTGATCGCGAGGCTTAC 58.405 57.895 16.66 2.26 38.83 2.34
331 332 6.867799 TTTTTAATGCATGATACACAAGCG 57.132 33.333 0.00 0.00 44.76 4.68
374 376 6.705863 AGAAATTTAATCTGCATCCTCACC 57.294 37.500 0.00 0.00 0.00 4.02
408 410 6.096705 CCATAGTGTAATTTGCAGGGATTTCA 59.903 38.462 0.00 0.00 0.00 2.69
412 414 6.930722 AGTGTAATTTGCAGGGATTTCAAAAG 59.069 34.615 0.00 0.00 34.00 2.27
418 420 5.191727 TGCAGGGATTTCAAAAGGAGATA 57.808 39.130 0.00 0.00 0.00 1.98
446 449 3.363627 TCCAAACCCACGGTTAGTTTTT 58.636 40.909 0.00 0.00 46.20 1.94
460 463 5.580691 GGTTAGTTTTTGCCTCCATAAATGC 59.419 40.000 0.00 0.00 0.00 3.56
540 543 4.780815 TGGACCATATTGTCTGGAATCAC 58.219 43.478 6.87 0.00 37.22 3.06
566 569 3.571401 CCAGATGAAAATATGAGCCCCAC 59.429 47.826 0.00 0.00 0.00 4.61
636 639 6.989169 TGAAATAACAAAAATGTTGACCCCAG 59.011 34.615 4.55 0.00 33.59 4.45
637 640 2.908688 ACAAAAATGTTGACCCCAGC 57.091 45.000 0.00 0.00 0.00 4.85
646 650 1.611491 GTTGACCCCAGCGATCAAAAA 59.389 47.619 0.00 0.00 34.28 1.94
698 967 2.125310 CGCGTATTGGCCAGGTGA 60.125 61.111 5.11 0.00 0.00 4.02
702 971 0.824109 CGTATTGGCCAGGTGAGAGA 59.176 55.000 5.11 0.00 0.00 3.10
703 972 1.202463 CGTATTGGCCAGGTGAGAGAG 60.202 57.143 5.11 0.00 0.00 3.20
704 973 1.139853 GTATTGGCCAGGTGAGAGAGG 59.860 57.143 5.11 0.00 0.00 3.69
717 989 2.235650 TGAGAGAGGAAGAATGGCTGTG 59.764 50.000 0.00 0.00 0.00 3.66
769 1041 0.246086 ACAGTGTCAGCAGCTAGAGC 59.754 55.000 0.00 0.00 42.49 4.09
840 1115 2.018582 GAAGCAGTGACGCGCTCATC 62.019 60.000 5.73 0.40 37.54 2.92
841 1116 3.906649 GCAGTGACGCGCTCATCG 61.907 66.667 5.73 6.05 42.12 3.84
854 1129 2.346741 CGCTCATCGCTCGTTTGATTAC 60.347 50.000 0.00 0.00 36.13 1.89
941 1218 3.451894 GGGCGCCCAAATGACAGG 61.452 66.667 40.73 0.00 35.81 4.00
1033 1310 0.320683 GCCCAAAGTCACATTTGCCC 60.321 55.000 0.00 0.00 38.57 5.36
1073 1350 1.454111 ACGTAGCTGGAGCCTCGAT 60.454 57.895 16.25 2.83 43.38 3.59
1087 1364 1.759445 CCTCGATGGACCTGATTGAGT 59.241 52.381 7.84 0.00 38.35 3.41
1141 1419 5.396213 CCATAAGTCAGAAGAAAGAGGAGGG 60.396 48.000 0.00 0.00 0.00 4.30
1145 1423 2.383683 TCAGAAGAAAGAGGAGGGGAGA 59.616 50.000 0.00 0.00 0.00 3.71
1272 1550 1.337384 TGCCAGAGGTATCGCCATGT 61.337 55.000 0.00 0.00 40.61 3.21
1319 1602 4.250464 TGATTCCTTGATTCACCGTGTAC 58.750 43.478 0.00 0.00 0.00 2.90
1348 1631 5.515626 GTCGATATTTACAACTTCTGACGCT 59.484 40.000 0.00 0.00 0.00 5.07
1427 1710 3.751246 CCCAGCCCAATGCACACG 61.751 66.667 0.00 0.00 44.83 4.49
1428 1711 4.424566 CCAGCCCAATGCACACGC 62.425 66.667 0.00 0.00 44.83 5.34
1651 1934 1.269621 CGGAACTTCAAGTCGGACACT 60.270 52.381 11.27 0.00 36.64 3.55
1813 2096 2.002586 CAGGTGAATGAAGCTACGTGG 58.997 52.381 0.00 0.00 0.00 4.94
1901 2184 2.741759 AATTCCCAACCGAAATGTGC 57.258 45.000 0.00 0.00 0.00 4.57
1911 2194 1.358402 GAAATGTGCGTGTGTGCCA 59.642 52.632 0.00 0.00 0.00 4.92
1920 2203 1.097232 CGTGTGTGCCATCCATGATT 58.903 50.000 0.00 0.00 0.00 2.57
1930 2213 4.242475 GCCATCCATGATTATGCATGTTG 58.758 43.478 10.16 0.00 43.16 3.33
2106 2412 2.165641 TGTCTACGAGTACATGGCCAAG 59.834 50.000 10.96 8.43 0.00 3.61
2190 2502 5.504173 TATCAACTGATTAGAGACGCAGACG 60.504 44.000 0.00 0.00 39.53 4.18
2207 2526 0.743097 ACGGGGATAGCTAACACGAC 59.257 55.000 24.55 0.67 0.00 4.34
2227 2546 3.762293 GCATTGTGCTCACCACCA 58.238 55.556 0.00 0.00 44.01 4.17
2228 2547 1.286880 GCATTGTGCTCACCACCAC 59.713 57.895 0.00 0.00 44.01 4.16
2435 2755 1.635663 GACCCTTCACGTTCCGCATG 61.636 60.000 0.00 0.00 0.00 4.06
2436 2756 2.480555 CCTTCACGTTCCGCATGC 59.519 61.111 7.91 7.91 0.00 4.06
2437 2757 2.324330 CCTTCACGTTCCGCATGCA 61.324 57.895 19.57 0.00 0.00 3.96
2438 2758 1.154413 CTTCACGTTCCGCATGCAC 60.154 57.895 19.57 7.58 0.00 4.57
3002 3342 3.608662 GGTGGACACGGTCACGGA 61.609 66.667 6.41 0.00 46.48 4.69
3178 3528 8.183536 TGAGCATGTTATTTTCATGTGTCATAC 58.816 33.333 7.55 0.00 42.94 2.39
3179 3529 8.054152 AGCATGTTATTTTCATGTGTCATACA 57.946 30.769 7.55 0.00 42.94 2.29
3231 3585 5.337554 CATGTTCGTATCGGAACTCAACTA 58.662 41.667 6.94 0.00 45.11 2.24
3243 3597 3.223423 ACTCAACTAGCACATCGTCAG 57.777 47.619 0.00 0.00 0.00 3.51
3284 3639 4.692228 TGGAAGCCAGTTCAAATTTTGTC 58.308 39.130 8.89 4.49 36.82 3.18
3292 3647 3.425193 AGTTCAAATTTTGTCGCGAATGC 59.575 39.130 12.06 0.00 37.91 3.56
3302 3657 0.528466 TCGCGAATGCCAGAGATCAC 60.528 55.000 6.20 0.00 38.08 3.06
3304 3659 0.654683 GCGAATGCCAGAGATCACAC 59.345 55.000 0.00 0.00 33.98 3.82
3310 3665 0.247736 GCCAGAGATCACACGGAGTT 59.752 55.000 0.00 0.00 41.61 3.01
3440 4902 6.502136 GCTAAAGCAGATTGTCTAAAACCT 57.498 37.500 0.00 0.00 41.59 3.50
3441 4903 6.317857 GCTAAAGCAGATTGTCTAAAACCTG 58.682 40.000 0.00 0.00 41.59 4.00
3448 4910 1.080638 TGTCTAAAACCTGCCCCCAT 58.919 50.000 0.00 0.00 0.00 4.00
3482 4948 5.296283 CCTATTTCTCTTCCTTCAGTGCATG 59.704 44.000 0.00 0.00 0.00 4.06
3483 4949 2.775911 TCTCTTCCTTCAGTGCATGG 57.224 50.000 0.00 0.00 0.00 3.66
3484 4950 2.259917 TCTCTTCCTTCAGTGCATGGA 58.740 47.619 0.00 0.00 0.00 3.41
3485 4951 2.235650 TCTCTTCCTTCAGTGCATGGAG 59.764 50.000 0.00 0.00 33.78 3.86
3504 4970 7.094805 GCATGGAGTACAACTTATTTGAACTCA 60.095 37.037 0.00 0.00 38.73 3.41
3506 4972 8.322906 TGGAGTACAACTTATTTGAACTCATG 57.677 34.615 0.00 0.00 38.73 3.07
3507 4973 7.936847 TGGAGTACAACTTATTTGAACTCATGT 59.063 33.333 0.00 0.00 38.73 3.21
3529 4995 8.858186 CATGTTTGCATCACGATTATTAAAACA 58.142 29.630 0.00 0.00 38.79 2.83
3616 5090 7.587037 AATCCAAATGAACGGAATGATGTAT 57.413 32.000 0.00 0.00 34.22 2.29
3617 5091 6.618287 TCCAAATGAACGGAATGATGTATC 57.382 37.500 0.00 0.00 0.00 2.24
3621 5095 3.453424 TGAACGGAATGATGTATCGGTG 58.547 45.455 0.00 0.00 30.66 4.94
3624 5098 4.336889 ACGGAATGATGTATCGGTGAAT 57.663 40.909 0.00 0.00 0.00 2.57
3631 5105 7.360691 GGAATGATGTATCGGTGAATCATGAAG 60.361 40.741 0.00 0.00 39.20 3.02
3635 5109 5.729510 TGTATCGGTGAATCATGAAGACAA 58.270 37.500 0.00 0.00 0.00 3.18
3637 5111 5.808042 ATCGGTGAATCATGAAGACAAAG 57.192 39.130 0.00 0.00 0.00 2.77
3638 5112 4.893608 TCGGTGAATCATGAAGACAAAGA 58.106 39.130 0.00 1.43 0.00 2.52
3640 5114 5.179368 TCGGTGAATCATGAAGACAAAGAAC 59.821 40.000 0.00 0.00 0.00 3.01
3641 5115 5.049474 CGGTGAATCATGAAGACAAAGAACA 60.049 40.000 0.00 0.00 0.00 3.18
3642 5116 6.348786 CGGTGAATCATGAAGACAAAGAACAT 60.349 38.462 0.00 0.00 0.00 2.71
3643 5117 7.373493 GGTGAATCATGAAGACAAAGAACATT 58.627 34.615 0.00 0.00 0.00 2.71
3644 5118 8.514594 GGTGAATCATGAAGACAAAGAACATTA 58.485 33.333 0.00 0.00 0.00 1.90
3647 5121 9.512435 GAATCATGAAGACAAAGAACATTATGG 57.488 33.333 0.00 0.00 0.00 2.74
3648 5122 8.812513 ATCATGAAGACAAAGAACATTATGGA 57.187 30.769 0.00 0.00 0.00 3.41
3649 5123 8.634335 TCATGAAGACAAAGAACATTATGGAA 57.366 30.769 0.00 0.00 0.00 3.53
3650 5124 9.246670 TCATGAAGACAAAGAACATTATGGAAT 57.753 29.630 0.00 0.00 0.00 3.01
3665 5139 9.990868 ACATTATGGAATAAAACTCTTTACCCT 57.009 29.630 0.00 0.00 42.96 4.34
3667 5141 8.726870 TTATGGAATAAAACTCTTTACCCTCG 57.273 34.615 0.00 0.00 35.49 4.63
3668 5142 4.939439 TGGAATAAAACTCTTTACCCTCGC 59.061 41.667 0.00 0.00 29.82 5.03
3669 5143 4.939439 GGAATAAAACTCTTTACCCTCGCA 59.061 41.667 0.00 0.00 29.82 5.10
3670 5144 5.413523 GGAATAAAACTCTTTACCCTCGCAA 59.586 40.000 0.00 0.00 29.82 4.85
3671 5145 6.072342 GGAATAAAACTCTTTACCCTCGCAAA 60.072 38.462 0.00 0.00 29.82 3.68
3672 5146 6.887626 ATAAAACTCTTTACCCTCGCAAAA 57.112 33.333 0.00 0.00 29.82 2.44
3673 5147 5.585820 AAAACTCTTTACCCTCGCAAAAA 57.414 34.783 0.00 0.00 0.00 1.94
3674 5148 5.784578 AAACTCTTTACCCTCGCAAAAAT 57.215 34.783 0.00 0.00 0.00 1.82
3675 5149 6.887626 AAACTCTTTACCCTCGCAAAAATA 57.112 33.333 0.00 0.00 0.00 1.40
3676 5150 6.887626 AACTCTTTACCCTCGCAAAAATAA 57.112 33.333 0.00 0.00 0.00 1.40
3677 5151 6.887626 ACTCTTTACCCTCGCAAAAATAAA 57.112 33.333 0.00 0.00 0.00 1.40
3678 5152 7.279750 ACTCTTTACCCTCGCAAAAATAAAA 57.720 32.000 0.00 0.00 0.00 1.52
3679 5153 7.892609 ACTCTTTACCCTCGCAAAAATAAAAT 58.107 30.769 0.00 0.00 0.00 1.82
3680 5154 7.812669 ACTCTTTACCCTCGCAAAAATAAAATG 59.187 33.333 0.00 0.00 0.00 2.32
3681 5155 7.887381 TCTTTACCCTCGCAAAAATAAAATGA 58.113 30.769 0.00 0.00 0.00 2.57
3682 5156 8.361139 TCTTTACCCTCGCAAAAATAAAATGAA 58.639 29.630 0.00 0.00 0.00 2.57
3683 5157 7.876896 TTACCCTCGCAAAAATAAAATGAAC 57.123 32.000 0.00 0.00 0.00 3.18
3706 5180 2.874648 CTATTGCCCACGGAGCTGCA 62.875 60.000 5.91 0.00 0.00 4.41
3729 5203 3.954904 ACGTATGCTCAACTAGGTCATCT 59.045 43.478 0.00 0.00 0.00 2.90
3734 5208 5.227569 TGCTCAACTAGGTCATCTCAAAA 57.772 39.130 0.00 0.00 0.00 2.44
3738 5212 6.500684 TCAACTAGGTCATCTCAAAATTGC 57.499 37.500 0.00 0.00 0.00 3.56
3741 5215 6.059787 ACTAGGTCATCTCAAAATTGCTCT 57.940 37.500 0.00 0.00 0.00 4.09
3758 5232 6.537453 TTGCTCTGCTTAGTCTTCTATCTT 57.463 37.500 0.00 0.00 0.00 2.40
3763 5237 7.106439 TCTGCTTAGTCTTCTATCTTTGGAG 57.894 40.000 0.00 0.00 0.00 3.86
3791 5265 6.655003 ACTTCAATAGATGTGTAGGTTTGGTG 59.345 38.462 0.00 0.00 31.61 4.17
3792 5266 4.941263 TCAATAGATGTGTAGGTTTGGTGC 59.059 41.667 0.00 0.00 0.00 5.01
3796 5270 2.949177 TGTGTAGGTTTGGTGCTGAT 57.051 45.000 0.00 0.00 0.00 2.90
3797 5271 2.503331 TGTGTAGGTTTGGTGCTGATG 58.497 47.619 0.00 0.00 0.00 3.07
3798 5272 2.158682 TGTGTAGGTTTGGTGCTGATGT 60.159 45.455 0.00 0.00 0.00 3.06
3799 5273 2.484264 GTGTAGGTTTGGTGCTGATGTC 59.516 50.000 0.00 0.00 0.00 3.06
3800 5274 1.732259 GTAGGTTTGGTGCTGATGTCG 59.268 52.381 0.00 0.00 0.00 4.35
3801 5275 1.210155 GGTTTGGTGCTGATGTCGC 59.790 57.895 0.00 0.00 0.00 5.19
3802 5276 1.237285 GGTTTGGTGCTGATGTCGCT 61.237 55.000 0.00 0.00 0.00 4.93
3803 5277 0.166814 GTTTGGTGCTGATGTCGCTC 59.833 55.000 0.00 0.00 0.00 5.03
3804 5278 0.035317 TTTGGTGCTGATGTCGCTCT 59.965 50.000 0.00 0.00 0.00 4.09
3805 5279 0.671472 TTGGTGCTGATGTCGCTCTG 60.671 55.000 0.00 0.00 0.00 3.35
3806 5280 1.812922 GGTGCTGATGTCGCTCTGG 60.813 63.158 0.00 0.00 0.00 3.86
3807 5281 1.079543 GTGCTGATGTCGCTCTGGT 60.080 57.895 0.00 0.00 0.00 4.00
3808 5282 0.173481 GTGCTGATGTCGCTCTGGTA 59.827 55.000 0.00 0.00 0.00 3.25
3809 5283 1.114627 TGCTGATGTCGCTCTGGTAT 58.885 50.000 0.00 0.00 0.00 2.73
3810 5284 1.067669 TGCTGATGTCGCTCTGGTATC 59.932 52.381 0.00 0.00 0.00 2.24
3811 5285 1.067669 GCTGATGTCGCTCTGGTATCA 59.932 52.381 0.00 0.00 0.00 2.15
3812 5286 2.288702 GCTGATGTCGCTCTGGTATCAT 60.289 50.000 0.00 0.00 0.00 2.45
3813 5287 3.315418 CTGATGTCGCTCTGGTATCATG 58.685 50.000 0.00 0.00 0.00 3.07
3814 5288 2.036346 TGATGTCGCTCTGGTATCATGG 59.964 50.000 0.00 0.00 0.00 3.66
3815 5289 1.485124 TGTCGCTCTGGTATCATGGT 58.515 50.000 0.00 0.00 0.00 3.55
3840 5334 3.262151 TCCCCACACGATCATACTCAAAA 59.738 43.478 0.00 0.00 0.00 2.44
3869 5365 5.751990 TCTTTGATCTCACATGATGTCATCG 59.248 40.000 8.29 0.00 33.61 3.84
3881 5377 4.236147 TGATGTCATCGTTTGCCAAAATG 58.764 39.130 8.29 0.00 34.18 2.32
3883 5379 3.379240 TGTCATCGTTTGCCAAAATGTG 58.621 40.909 0.00 0.00 34.46 3.21
3903 5399 8.538409 AATGTGTTTTGATCCAAAAATCTAGC 57.462 30.769 6.45 0.00 43.50 3.42
3905 5401 7.495901 TGTGTTTTGATCCAAAAATCTAGCAA 58.504 30.769 6.45 0.00 43.50 3.91
3920 5416 5.222079 TCTAGCAAGTACATGAACAACCA 57.778 39.130 0.00 0.00 0.00 3.67
3929 5425 2.622942 ACATGAACAACCACAAAGCGAT 59.377 40.909 0.00 0.00 0.00 4.58
3965 5461 2.259917 TGCTCTCTCAACATCCTTCCA 58.740 47.619 0.00 0.00 0.00 3.53
3992 5488 6.647895 GCTGATTGAACCTTGTTGAAATGAAT 59.352 34.615 0.00 0.00 0.00 2.57
4032 5528 8.482128 TGTGGGTTAGAAATTTCTTCACAATTT 58.518 29.630 25.02 1.22 38.70 1.82
4034 5530 8.700051 TGGGTTAGAAATTTCTTCACAATTTCA 58.300 29.630 25.02 12.69 46.49 2.69
4059 5555 4.293102 ACCACAAGGGATATATGCCATCAT 59.707 41.667 23.67 5.69 41.29 2.45
4114 5610 7.913789 ACCATTGACTATAAAGTTCACCACTA 58.086 34.615 0.00 0.00 35.56 2.74
4122 5618 4.623932 AAAGTTCACCACTAGAGCATCA 57.376 40.909 0.00 0.00 32.73 3.07
4133 5629 5.337089 CCACTAGAGCATCACCATCGATATT 60.337 44.000 0.00 0.00 37.82 1.28
4156 5652 0.951558 GTCATTGTGCGACCAAGGTT 59.048 50.000 0.00 0.00 0.00 3.50
4157 5653 1.336755 GTCATTGTGCGACCAAGGTTT 59.663 47.619 0.00 0.00 0.00 3.27
4173 5669 1.467342 GGTTTCCCAACGTATGAGTGC 59.533 52.381 0.00 0.00 33.13 4.40
4179 5675 2.491693 CCCAACGTATGAGTGCCAAATT 59.508 45.455 0.00 0.00 0.00 1.82
4180 5676 3.056891 CCCAACGTATGAGTGCCAAATTT 60.057 43.478 0.00 0.00 0.00 1.82
4182 5678 5.092781 CCAACGTATGAGTGCCAAATTTAC 58.907 41.667 0.00 0.00 0.00 2.01
4191 5687 7.048629 TGAGTGCCAAATTTACAAATCTTGA 57.951 32.000 0.00 0.00 0.00 3.02
4201 5697 9.598517 AAATTTACAAATCTTGAGAAAGCAACA 57.401 25.926 0.00 0.00 0.00 3.33
4217 5713 2.490903 GCAACAGCTTCAAGGATGATGT 59.509 45.455 0.00 0.00 37.81 3.06
4225 5721 5.482878 AGCTTCAAGGATGATGTTTGGATTT 59.517 36.000 0.00 0.00 34.96 2.17
4235 5731 2.898705 TGTTTGGATTTGGTGCAACAC 58.101 42.857 2.40 0.00 37.93 3.32
4269 5765 3.383185 TGATATCGGGGGCAATGTTTTTC 59.617 43.478 0.00 0.00 0.00 2.29
4280 5778 3.069443 GCAATGTTTTTCCTCCAAGACCA 59.931 43.478 0.00 0.00 0.00 4.02
4294 5792 0.109153 AGACCAAGTGCACATGCTCA 59.891 50.000 21.04 0.00 42.66 4.26
4295 5793 0.239347 GACCAAGTGCACATGCTCAC 59.761 55.000 21.04 9.24 42.66 3.51
4297 5795 0.240145 CCAAGTGCACATGCTCACAG 59.760 55.000 21.04 0.00 42.66 3.66
4298 5796 0.949397 CAAGTGCACATGCTCACAGT 59.051 50.000 21.04 5.04 42.66 3.55
4299 5797 2.145536 CAAGTGCACATGCTCACAGTA 58.854 47.619 21.04 0.00 42.66 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.431912 CCACACTGTTTTGATTCGATCGA 59.568 43.478 15.15 15.15 0.00 3.59
1 2 3.186409 ACCACACTGTTTTGATTCGATCG 59.814 43.478 9.36 9.36 0.00 3.69
2 3 4.749245 ACCACACTGTTTTGATTCGATC 57.251 40.909 0.00 0.00 0.00 3.69
3 4 4.338118 ACAACCACACTGTTTTGATTCGAT 59.662 37.500 7.13 0.00 0.00 3.59
4 5 3.692101 ACAACCACACTGTTTTGATTCGA 59.308 39.130 7.13 0.00 0.00 3.71
5 6 3.790820 CACAACCACACTGTTTTGATTCG 59.209 43.478 7.13 0.00 29.45 3.34
6 7 3.551485 GCACAACCACACTGTTTTGATTC 59.449 43.478 7.13 0.00 29.45 2.52
7 8 3.520569 GCACAACCACACTGTTTTGATT 58.479 40.909 7.13 0.00 29.45 2.57
8 9 2.159114 GGCACAACCACACTGTTTTGAT 60.159 45.455 7.13 0.00 38.86 2.57
9 10 1.203523 GGCACAACCACACTGTTTTGA 59.796 47.619 7.13 0.00 38.86 2.69
10 11 1.067283 TGGCACAACCACACTGTTTTG 60.067 47.619 0.00 0.43 46.36 2.44
11 12 1.204467 CTGGCACAACCACACTGTTTT 59.796 47.619 0.00 0.00 46.36 2.43
12 13 0.817013 CTGGCACAACCACACTGTTT 59.183 50.000 0.00 0.00 46.36 2.83
13 14 0.034574 TCTGGCACAACCACACTGTT 60.035 50.000 0.00 0.00 46.36 3.16
14 15 0.183492 ATCTGGCACAACCACACTGT 59.817 50.000 0.00 0.00 46.36 3.55
15 16 0.877071 GATCTGGCACAACCACACTG 59.123 55.000 0.00 0.00 46.36 3.66
16 17 0.250901 GGATCTGGCACAACCACACT 60.251 55.000 0.00 0.00 46.36 3.55
17 18 1.244019 GGGATCTGGCACAACCACAC 61.244 60.000 0.00 0.00 46.36 3.82
18 19 1.074775 GGGATCTGGCACAACCACA 59.925 57.895 0.00 0.00 46.36 4.17
19 20 1.074775 TGGGATCTGGCACAACCAC 59.925 57.895 0.00 0.00 46.36 4.16
21 22 1.678970 GGTGGGATCTGGCACAACC 60.679 63.158 0.00 0.00 38.70 3.77
22 23 0.323725 ATGGTGGGATCTGGCACAAC 60.324 55.000 0.00 0.00 38.70 3.32
23 24 1.294041 TATGGTGGGATCTGGCACAA 58.706 50.000 0.00 0.00 38.70 3.33
24 25 1.294041 TTATGGTGGGATCTGGCACA 58.706 50.000 0.00 0.00 0.00 4.57
25 26 2.508526 GATTATGGTGGGATCTGGCAC 58.491 52.381 0.00 0.00 0.00 5.01
26 27 1.072173 CGATTATGGTGGGATCTGGCA 59.928 52.381 0.00 0.00 0.00 4.92
27 28 1.347707 TCGATTATGGTGGGATCTGGC 59.652 52.381 0.00 0.00 0.00 4.85
28 29 3.071602 ACTTCGATTATGGTGGGATCTGG 59.928 47.826 0.00 0.00 0.00 3.86
29 30 4.310769 GACTTCGATTATGGTGGGATCTG 58.689 47.826 0.00 0.00 0.00 2.90
30 31 3.325135 GGACTTCGATTATGGTGGGATCT 59.675 47.826 0.00 0.00 0.00 2.75
31 32 3.557264 GGGACTTCGATTATGGTGGGATC 60.557 52.174 0.00 0.00 0.00 3.36
32 33 2.372172 GGGACTTCGATTATGGTGGGAT 59.628 50.000 0.00 0.00 0.00 3.85
33 34 1.766496 GGGACTTCGATTATGGTGGGA 59.234 52.381 0.00 0.00 0.00 4.37
34 35 1.540363 CGGGACTTCGATTATGGTGGG 60.540 57.143 0.00 0.00 0.00 4.61
35 36 1.411246 TCGGGACTTCGATTATGGTGG 59.589 52.381 0.00 0.00 33.92 4.61
36 37 2.882927 TCGGGACTTCGATTATGGTG 57.117 50.000 0.00 0.00 33.92 4.17
37 38 2.548067 GCATCGGGACTTCGATTATGGT 60.548 50.000 0.00 0.00 46.23 3.55
38 39 2.069273 GCATCGGGACTTCGATTATGG 58.931 52.381 0.00 0.00 46.23 2.74
39 40 2.754472 TGCATCGGGACTTCGATTATG 58.246 47.619 0.00 0.00 46.23 1.90
40 41 3.469008 TTGCATCGGGACTTCGATTAT 57.531 42.857 0.00 0.00 46.23 1.28
41 42 2.971660 TTGCATCGGGACTTCGATTA 57.028 45.000 0.00 0.00 46.23 1.75
42 43 2.009774 CTTTGCATCGGGACTTCGATT 58.990 47.619 0.00 0.00 46.23 3.34
44 45 0.391130 CCTTTGCATCGGGACTTCGA 60.391 55.000 0.00 0.00 43.61 3.71
45 46 0.391130 TCCTTTGCATCGGGACTTCG 60.391 55.000 0.00 0.00 0.00 3.79
46 47 1.087501 GTCCTTTGCATCGGGACTTC 58.912 55.000 19.47 1.56 44.21 3.01
47 48 3.249687 GTCCTTTGCATCGGGACTT 57.750 52.632 19.47 0.00 44.21 3.01
49 50 1.026718 CCAGTCCTTTGCATCGGGAC 61.027 60.000 19.25 19.25 46.94 4.46
50 51 1.299648 CCAGTCCTTTGCATCGGGA 59.700 57.895 0.00 0.00 0.00 5.14
51 52 1.750399 CCCAGTCCTTTGCATCGGG 60.750 63.158 0.00 0.00 0.00 5.14
52 53 0.745845 CTCCCAGTCCTTTGCATCGG 60.746 60.000 0.00 0.00 0.00 4.18
53 54 0.745845 CCTCCCAGTCCTTTGCATCG 60.746 60.000 0.00 0.00 0.00 3.84
54 55 0.620556 TCCTCCCAGTCCTTTGCATC 59.379 55.000 0.00 0.00 0.00 3.91
55 56 0.622665 CTCCTCCCAGTCCTTTGCAT 59.377 55.000 0.00 0.00 0.00 3.96
56 57 2.069776 CTCCTCCCAGTCCTTTGCA 58.930 57.895 0.00 0.00 0.00 4.08
57 58 1.377856 GCTCCTCCCAGTCCTTTGC 60.378 63.158 0.00 0.00 0.00 3.68
58 59 0.035630 CAGCTCCTCCCAGTCCTTTG 60.036 60.000 0.00 0.00 0.00 2.77
59 60 0.178891 TCAGCTCCTCCCAGTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
60 61 0.178891 TTCAGCTCCTCCCAGTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
61 62 0.043940 ATTCAGCTCCTCCCAGTCCT 59.956 55.000 0.00 0.00 0.00 3.85
62 63 0.179936 CATTCAGCTCCTCCCAGTCC 59.820 60.000 0.00 0.00 0.00 3.85
63 64 1.198713 TCATTCAGCTCCTCCCAGTC 58.801 55.000 0.00 0.00 0.00 3.51
64 65 1.890552 ATCATTCAGCTCCTCCCAGT 58.109 50.000 0.00 0.00 0.00 4.00
65 66 3.237746 TCTATCATTCAGCTCCTCCCAG 58.762 50.000 0.00 0.00 0.00 4.45
66 67 3.334910 TCTATCATTCAGCTCCTCCCA 57.665 47.619 0.00 0.00 0.00 4.37
67 68 4.577875 CAATCTATCATTCAGCTCCTCCC 58.422 47.826 0.00 0.00 0.00 4.30
68 69 4.002316 GCAATCTATCATTCAGCTCCTCC 58.998 47.826 0.00 0.00 0.00 4.30
69 70 4.002316 GGCAATCTATCATTCAGCTCCTC 58.998 47.826 0.00 0.00 0.00 3.71
70 71 3.393609 TGGCAATCTATCATTCAGCTCCT 59.606 43.478 0.00 0.00 0.00 3.69
71 72 3.748083 TGGCAATCTATCATTCAGCTCC 58.252 45.455 0.00 0.00 0.00 4.70
72 73 4.639334 TCTGGCAATCTATCATTCAGCTC 58.361 43.478 0.00 0.00 0.00 4.09
73 74 4.701651 TCTGGCAATCTATCATTCAGCT 57.298 40.909 0.00 0.00 0.00 4.24
74 75 4.820716 AGTTCTGGCAATCTATCATTCAGC 59.179 41.667 0.00 0.00 0.00 4.26
75 76 6.145209 CGTAGTTCTGGCAATCTATCATTCAG 59.855 42.308 0.00 0.00 0.00 3.02
76 77 5.985530 CGTAGTTCTGGCAATCTATCATTCA 59.014 40.000 0.00 0.00 0.00 2.57
77 78 6.216569 TCGTAGTTCTGGCAATCTATCATTC 58.783 40.000 0.00 0.00 0.00 2.67
78 79 6.161855 TCGTAGTTCTGGCAATCTATCATT 57.838 37.500 0.00 0.00 0.00 2.57
79 80 5.777802 CTCGTAGTTCTGGCAATCTATCAT 58.222 41.667 0.00 0.00 0.00 2.45
80 81 4.499865 GCTCGTAGTTCTGGCAATCTATCA 60.500 45.833 0.00 0.00 0.00 2.15
81 82 3.984633 GCTCGTAGTTCTGGCAATCTATC 59.015 47.826 0.00 0.00 0.00 2.08
82 83 3.243907 GGCTCGTAGTTCTGGCAATCTAT 60.244 47.826 0.00 0.00 0.00 1.98
83 84 2.100916 GGCTCGTAGTTCTGGCAATCTA 59.899 50.000 0.00 0.00 0.00 1.98
84 85 1.134670 GGCTCGTAGTTCTGGCAATCT 60.135 52.381 0.00 0.00 0.00 2.40
85 86 1.291132 GGCTCGTAGTTCTGGCAATC 58.709 55.000 0.00 0.00 0.00 2.67
86 87 0.613260 TGGCTCGTAGTTCTGGCAAT 59.387 50.000 0.00 0.00 32.14 3.56
87 88 0.320421 GTGGCTCGTAGTTCTGGCAA 60.320 55.000 0.00 0.00 36.77 4.52
88 89 1.292223 GTGGCTCGTAGTTCTGGCA 59.708 57.895 0.00 0.00 0.00 4.92
89 90 1.448013 GGTGGCTCGTAGTTCTGGC 60.448 63.158 0.00 0.00 0.00 4.85
90 91 0.108615 CTGGTGGCTCGTAGTTCTGG 60.109 60.000 0.00 0.00 0.00 3.86
91 92 0.888619 TCTGGTGGCTCGTAGTTCTG 59.111 55.000 0.00 0.00 0.00 3.02
92 93 1.178276 CTCTGGTGGCTCGTAGTTCT 58.822 55.000 0.00 0.00 0.00 3.01
93 94 0.458716 GCTCTGGTGGCTCGTAGTTC 60.459 60.000 0.00 0.00 0.00 3.01
94 95 1.592223 GCTCTGGTGGCTCGTAGTT 59.408 57.895 0.00 0.00 0.00 2.24
95 96 2.701780 CGCTCTGGTGGCTCGTAGT 61.702 63.158 0.00 0.00 0.00 2.73
96 97 2.103143 CGCTCTGGTGGCTCGTAG 59.897 66.667 0.00 0.00 0.00 3.51
97 98 4.129737 GCGCTCTGGTGGCTCGTA 62.130 66.667 0.00 0.00 0.00 3.43
108 109 1.211449 CGTCTTCTGTCTGCGCTCT 59.789 57.895 9.73 0.00 0.00 4.09
112 113 2.148982 CGCTCGTCTTCTGTCTGCG 61.149 63.158 0.00 0.00 36.19 5.18
139 140 5.334414 GCATCATTTAGCAGAAATACCTCCG 60.334 44.000 0.00 0.00 0.00 4.63
141 142 5.334414 CCGCATCATTTAGCAGAAATACCTC 60.334 44.000 0.00 0.00 0.00 3.85
202 203 1.343985 TGCCCTCCTAACTAGATGGCA 60.344 52.381 5.77 5.77 0.00 4.92
203 204 1.424638 TGCCCTCCTAACTAGATGGC 58.575 55.000 0.00 0.70 0.00 4.40
213 214 1.746861 CGCATGAACATTGCCCTCCTA 60.747 52.381 0.00 0.00 0.00 2.94
240 241 2.846206 AGGTGGCCTCAAGATTATGTCA 59.154 45.455 3.32 0.00 0.00 3.58
250 251 1.377202 GCGATCAAGGTGGCCTCAA 60.377 57.895 3.32 0.00 30.89 3.02
251 252 2.268920 GCGATCAAGGTGGCCTCA 59.731 61.111 3.32 0.00 30.89 3.86
261 262 0.815095 TCTGTAAGCCTCGCGATCAA 59.185 50.000 10.36 0.00 0.00 2.57
266 267 0.382158 TGAGATCTGTAAGCCTCGCG 59.618 55.000 0.00 0.00 36.56 5.87
277 278 4.502962 GGAAAAGAGTGGACTGAGATCTG 58.497 47.826 0.00 0.00 0.00 2.90
374 376 3.685139 ATTACACTATGGGATGCTCCG 57.315 47.619 0.00 0.00 37.43 4.63
388 390 6.147656 CCTTTTGAAATCCCTGCAAATTACAC 59.852 38.462 0.00 0.00 32.27 2.90
397 399 6.721704 ATTATCTCCTTTTGAAATCCCTGC 57.278 37.500 0.00 0.00 0.00 4.85
408 410 9.332713 TGGGTTTGGAAAATATTATCTCCTTTT 57.667 29.630 10.78 0.00 0.00 2.27
412 414 6.238925 CCGTGGGTTTGGAAAATATTATCTCC 60.239 42.308 0.00 0.00 0.00 3.71
418 420 5.776208 ACTAACCGTGGGTTTGGAAAATATT 59.224 36.000 5.22 0.00 44.33 1.28
446 449 1.958579 GCTGATGCATTTATGGAGGCA 59.041 47.619 0.00 0.00 41.00 4.75
460 463 5.851720 AGAACAGTATATCTGGTGCTGATG 58.148 41.667 0.00 0.00 45.06 3.07
540 543 4.522022 GGGCTCATATTTTCATCTGGAAGG 59.478 45.833 0.00 0.00 36.72 3.46
566 569 5.314923 ACAGCAATTAAGGCACACATAAG 57.685 39.130 4.90 0.00 0.00 1.73
636 639 9.065871 GGAGCATAATAACATATTTTTGATCGC 57.934 33.333 0.00 0.00 0.00 4.58
646 650 8.310382 GTCAGACTCAGGAGCATAATAACATAT 58.690 37.037 0.00 0.00 0.00 1.78
666 670 5.345202 CCAATACGCGGAAATATAGTCAGAC 59.655 44.000 12.47 0.00 0.00 3.51
698 967 1.065564 GCACAGCCATTCTTCCTCTCT 60.066 52.381 0.00 0.00 0.00 3.10
941 1218 1.080705 CGTGGAACTCCTCGTGGAC 60.081 63.158 11.19 0.00 45.02 4.02
1073 1350 2.367241 TCGTCAAACTCAATCAGGTCCA 59.633 45.455 0.00 0.00 0.00 4.02
1087 1364 3.243301 GCTATATCCCTCGTGTCGTCAAA 60.243 47.826 0.00 0.00 0.00 2.69
1141 1419 3.214328 CTGTAGCTCTCTCCTCTTCTCC 58.786 54.545 0.00 0.00 0.00 3.71
1145 1423 1.287739 AGGCTGTAGCTCTCTCCTCTT 59.712 52.381 3.63 0.00 41.70 2.85
1272 1550 8.786898 CAAGGTAGAACAAGATCAATTGAGAAA 58.213 33.333 14.54 0.00 34.20 2.52
1319 1602 8.169268 GTCAGAAGTTGTAAATATCGACCAAAG 58.831 37.037 0.00 0.00 0.00 2.77
1427 1710 4.849329 GCTCATTGCTGCCGCTGC 62.849 66.667 14.83 14.83 38.95 5.25
1813 2096 0.031585 GGTTCGGGTTGACCAAAAGC 59.968 55.000 2.12 1.95 40.22 3.51
1901 2184 6.840392 GCATAATCATGGATGGCACACACG 62.840 50.000 0.00 0.00 34.76 4.49
1911 2194 6.066032 TCACTCAACATGCATAATCATGGAT 58.934 36.000 0.00 0.00 46.02 3.41
1920 2203 3.129113 GTGCCAATCACTCAACATGCATA 59.871 43.478 0.00 0.00 42.38 3.14
1930 2213 1.841663 AACGTGCGTGCCAATCACTC 61.842 55.000 0.00 0.00 43.46 3.51
2085 2391 1.842052 TGGCCATGTACTCGTAGACA 58.158 50.000 0.00 0.00 0.00 3.41
2088 2394 1.202533 CCCTTGGCCATGTACTCGTAG 60.203 57.143 6.09 0.00 0.00 3.51
2106 2412 1.153349 GTGATCCTCGAGGTTGCCC 60.153 63.158 30.17 15.74 36.34 5.36
2190 2502 2.030096 GCTAGTCGTGTTAGCTATCCCC 60.030 54.545 0.00 0.00 40.24 4.81
2219 2538 2.836154 GCCTTCTGGTGGTGGTGA 59.164 61.111 0.00 0.00 35.27 4.02
2220 2539 2.669569 CGCCTTCTGGTGGTGGTG 60.670 66.667 0.00 0.00 40.05 4.17
2221 2540 4.643387 GCGCCTTCTGGTGGTGGT 62.643 66.667 0.00 0.00 43.74 4.16
2248 2567 4.056125 CTCCACGACAGCGGCTGA 62.056 66.667 34.70 11.61 43.17 4.26
2302 2621 3.426568 GAGTGCAGGAACGCCAGC 61.427 66.667 0.00 0.00 46.10 4.85
2308 2627 1.216710 CTCCGAGGAGTGCAGGAAC 59.783 63.158 10.88 0.00 37.47 3.62
2456 2776 2.316687 GTTAGACGTGCGCGATGC 59.683 61.111 28.73 14.74 46.70 3.91
2457 2777 0.248336 TAGGTTAGACGTGCGCGATG 60.248 55.000 28.73 2.91 42.00 3.84
2462 2782 0.529378 AGGGTTAGGTTAGACGTGCG 59.471 55.000 0.00 0.00 0.00 5.34
2463 2783 1.134877 GGAGGGTTAGGTTAGACGTGC 60.135 57.143 0.00 0.00 0.00 5.34
2885 3207 1.522569 GACCTCCTTCATGGACGGG 59.477 63.158 0.00 0.00 40.56 5.28
2985 3325 3.608662 TCCGTGACCGTGTCCACC 61.609 66.667 2.23 0.00 0.00 4.61
2987 3327 2.834043 TGTCCGTGACCGTGTCCA 60.834 61.111 2.23 0.00 0.00 4.02
2990 3330 2.726274 GACTGTCCGTGACCGTGT 59.274 61.111 0.00 1.69 30.64 4.49
3178 3528 7.981789 ACCTATAGATTACCGCACATTCATATG 59.018 37.037 0.00 0.00 37.79 1.78
3179 3529 8.079211 ACCTATAGATTACCGCACATTCATAT 57.921 34.615 0.00 0.00 0.00 1.78
3180 3530 7.476540 ACCTATAGATTACCGCACATTCATA 57.523 36.000 0.00 0.00 0.00 2.15
3181 3531 6.360370 ACCTATAGATTACCGCACATTCAT 57.640 37.500 0.00 0.00 0.00 2.57
3184 3534 5.305585 CCAACCTATAGATTACCGCACATT 58.694 41.667 0.00 0.00 0.00 2.71
3231 3585 1.317613 TTTTTGGCTGACGATGTGCT 58.682 45.000 0.00 0.00 0.00 4.40
3284 3639 0.807275 TGTGATCTCTGGCATTCGCG 60.807 55.000 0.00 0.00 39.92 5.87
3292 3647 2.001812 CAACTCCGTGTGATCTCTGG 57.998 55.000 0.00 0.00 0.00 3.86
3310 3665 2.208132 TTCCTTATTCCGCAAAGGCA 57.792 45.000 0.00 0.00 41.76 4.75
3417 4879 6.317857 CAGGTTTTAGACAATCTGCTTTAGC 58.682 40.000 0.00 0.00 42.50 3.09
3423 4885 2.164422 GGGCAGGTTTTAGACAATCTGC 59.836 50.000 9.73 9.73 44.60 4.26
3484 4950 9.950680 CAAACATGAGTTCAAATAAGTTGTACT 57.049 29.630 0.00 0.30 46.91 2.73
3485 4951 8.690840 GCAAACATGAGTTCAAATAAGTTGTAC 58.309 33.333 0.00 0.00 36.84 2.90
3504 4970 8.978564 TGTTTTAATAATCGTGATGCAAACAT 57.021 26.923 0.00 0.00 39.98 2.71
3529 4995 5.888691 TTGTATGCCGTGAATACACAAAT 57.111 34.783 4.69 0.00 46.20 2.32
3533 4999 5.478233 TGAATTGTATGCCGTGAATACAC 57.522 39.130 4.69 0.00 39.58 2.90
3537 5003 7.094508 TGTTATTGAATTGTATGCCGTGAAT 57.905 32.000 0.00 0.00 0.00 2.57
3543 5009 9.369904 ACTTGAAATGTTATTGAATTGTATGCC 57.630 29.630 0.00 0.00 0.00 4.40
3591 5064 8.690203 ATACATCATTCCGTTCATTTGGATTA 57.310 30.769 0.00 0.00 33.42 1.75
3605 5079 5.934043 TCATGATTCACCGATACATCATTCC 59.066 40.000 0.00 0.00 34.73 3.01
3616 5090 4.893608 TCTTTGTCTTCATGATTCACCGA 58.106 39.130 0.00 0.00 0.00 4.69
3617 5091 5.049474 TGTTCTTTGTCTTCATGATTCACCG 60.049 40.000 0.00 0.00 0.00 4.94
3621 5095 9.512435 CCATAATGTTCTTTGTCTTCATGATTC 57.488 33.333 0.00 0.00 0.00 2.52
3624 5098 8.634335 TTCCATAATGTTCTTTGTCTTCATGA 57.366 30.769 0.00 0.00 0.00 3.07
3641 5115 9.338622 CGAGGGTAAAGAGTTTTATTCCATAAT 57.661 33.333 0.00 0.00 32.26 1.28
3642 5116 7.281549 GCGAGGGTAAAGAGTTTTATTCCATAA 59.718 37.037 0.00 0.00 32.26 1.90
3643 5117 6.764560 GCGAGGGTAAAGAGTTTTATTCCATA 59.235 38.462 0.00 0.00 32.26 2.74
3644 5118 5.589050 GCGAGGGTAAAGAGTTTTATTCCAT 59.411 40.000 0.00 0.00 32.26 3.41
3645 5119 4.939439 GCGAGGGTAAAGAGTTTTATTCCA 59.061 41.667 0.00 0.00 32.26 3.53
3646 5120 4.939439 TGCGAGGGTAAAGAGTTTTATTCC 59.061 41.667 0.00 0.00 31.81 3.01
3647 5121 6.490566 TTGCGAGGGTAAAGAGTTTTATTC 57.509 37.500 0.00 0.00 31.81 1.75
3648 5122 6.887626 TTTGCGAGGGTAAAGAGTTTTATT 57.112 33.333 0.00 0.00 31.81 1.40
3649 5123 6.887626 TTTTGCGAGGGTAAAGAGTTTTAT 57.112 33.333 0.00 0.00 31.81 1.40
3650 5124 6.696441 TTTTTGCGAGGGTAAAGAGTTTTA 57.304 33.333 0.00 0.00 0.00 1.52
3651 5125 5.585820 TTTTTGCGAGGGTAAAGAGTTTT 57.414 34.783 0.00 0.00 0.00 2.43
3652 5126 5.784578 ATTTTTGCGAGGGTAAAGAGTTT 57.215 34.783 0.00 0.00 0.00 2.66
3653 5127 6.887626 TTATTTTTGCGAGGGTAAAGAGTT 57.112 33.333 0.00 0.00 0.00 3.01
3654 5128 6.887626 TTTATTTTTGCGAGGGTAAAGAGT 57.112 33.333 0.00 0.00 0.00 3.24
3655 5129 8.026607 TCATTTTATTTTTGCGAGGGTAAAGAG 58.973 33.333 0.00 0.00 0.00 2.85
3656 5130 7.887381 TCATTTTATTTTTGCGAGGGTAAAGA 58.113 30.769 0.00 0.00 0.00 2.52
3657 5131 8.432359 GTTCATTTTATTTTTGCGAGGGTAAAG 58.568 33.333 0.00 0.00 0.00 1.85
3658 5132 7.926555 TGTTCATTTTATTTTTGCGAGGGTAAA 59.073 29.630 0.00 0.00 0.00 2.01
3659 5133 7.434492 TGTTCATTTTATTTTTGCGAGGGTAA 58.566 30.769 0.00 0.00 0.00 2.85
3660 5134 6.982852 TGTTCATTTTATTTTTGCGAGGGTA 58.017 32.000 0.00 0.00 0.00 3.69
3661 5135 5.848406 TGTTCATTTTATTTTTGCGAGGGT 58.152 33.333 0.00 0.00 0.00 4.34
3662 5136 6.777526 TTGTTCATTTTATTTTTGCGAGGG 57.222 33.333 0.00 0.00 0.00 4.30
3663 5137 7.850501 AGTTTGTTCATTTTATTTTTGCGAGG 58.149 30.769 0.00 0.00 0.00 4.63
3670 5144 9.566432 TGGGCAATAGTTTGTTCATTTTATTTT 57.434 25.926 0.00 0.00 35.17 1.82
3671 5145 8.998377 GTGGGCAATAGTTTGTTCATTTTATTT 58.002 29.630 0.00 0.00 35.17 1.40
3672 5146 7.330700 CGTGGGCAATAGTTTGTTCATTTTATT 59.669 33.333 0.00 0.00 35.17 1.40
3673 5147 6.811170 CGTGGGCAATAGTTTGTTCATTTTAT 59.189 34.615 0.00 0.00 35.17 1.40
3674 5148 6.153067 CGTGGGCAATAGTTTGTTCATTTTA 58.847 36.000 0.00 0.00 35.17 1.52
3675 5149 4.987912 CGTGGGCAATAGTTTGTTCATTTT 59.012 37.500 0.00 0.00 35.17 1.82
3676 5150 4.555262 CGTGGGCAATAGTTTGTTCATTT 58.445 39.130 0.00 0.00 35.17 2.32
3677 5151 3.056891 CCGTGGGCAATAGTTTGTTCATT 60.057 43.478 0.00 0.00 35.17 2.57
3678 5152 2.491693 CCGTGGGCAATAGTTTGTTCAT 59.508 45.455 0.00 0.00 35.17 2.57
3679 5153 1.883275 CCGTGGGCAATAGTTTGTTCA 59.117 47.619 0.00 0.00 35.17 3.18
3680 5154 2.156098 TCCGTGGGCAATAGTTTGTTC 58.844 47.619 0.00 0.00 35.17 3.18
3681 5155 2.159382 CTCCGTGGGCAATAGTTTGTT 58.841 47.619 0.00 0.00 35.17 2.83
3682 5156 1.821216 CTCCGTGGGCAATAGTTTGT 58.179 50.000 0.00 0.00 35.17 2.83
3683 5157 0.451783 GCTCCGTGGGCAATAGTTTG 59.548 55.000 0.00 0.00 35.85 2.93
3706 5180 4.402793 AGATGACCTAGTTGAGCATACGTT 59.597 41.667 0.00 0.00 0.00 3.99
3709 5183 5.521906 TGAGATGACCTAGTTGAGCATAC 57.478 43.478 0.00 0.00 0.00 2.39
3729 5203 6.000219 AGAAGACTAAGCAGAGCAATTTTGA 59.000 36.000 0.00 0.00 0.00 2.69
3734 5208 6.729690 AGATAGAAGACTAAGCAGAGCAAT 57.270 37.500 0.00 0.00 32.04 3.56
3738 5212 7.106439 TCCAAAGATAGAAGACTAAGCAGAG 57.894 40.000 0.00 0.00 32.04 3.35
3741 5215 5.395768 GCCTCCAAAGATAGAAGACTAAGCA 60.396 44.000 0.00 0.00 32.04 3.91
3758 5232 4.263462 ACACATCTATTGAAGTGCCTCCAA 60.263 41.667 11.55 0.00 43.34 3.53
3763 5237 4.770795 ACCTACACATCTATTGAAGTGCC 58.229 43.478 11.55 0.00 43.34 5.01
3791 5265 1.067669 TGATACCAGAGCGACATCAGC 59.932 52.381 0.00 0.00 0.00 4.26
3792 5266 3.315418 CATGATACCAGAGCGACATCAG 58.685 50.000 0.00 0.00 0.00 2.90
3796 5270 1.485124 ACCATGATACCAGAGCGACA 58.515 50.000 0.00 0.00 0.00 4.35
3797 5271 2.205074 CAACCATGATACCAGAGCGAC 58.795 52.381 0.00 0.00 0.00 5.19
3798 5272 1.831106 ACAACCATGATACCAGAGCGA 59.169 47.619 0.00 0.00 0.00 4.93
3799 5273 2.205074 GACAACCATGATACCAGAGCG 58.795 52.381 0.00 0.00 0.00 5.03
3800 5274 2.565841 GGACAACCATGATACCAGAGC 58.434 52.381 0.00 0.00 35.97 4.09
3801 5275 2.158755 GGGGACAACCATGATACCAGAG 60.159 54.545 0.00 0.00 42.91 3.35
3802 5276 1.843851 GGGGACAACCATGATACCAGA 59.156 52.381 0.00 0.00 42.91 3.86
3803 5277 1.563879 TGGGGACAACCATGATACCAG 59.436 52.381 0.00 0.00 42.91 4.00
3804 5278 1.283613 GTGGGGACAACCATGATACCA 59.716 52.381 0.00 0.00 46.06 3.25
3805 5279 1.283613 TGTGGGGACAACCATGATACC 59.716 52.381 0.00 0.00 46.06 2.73
3806 5280 2.365582 GTGTGGGGACAACCATGATAC 58.634 52.381 0.00 0.00 46.06 2.24
3807 5281 1.065782 CGTGTGGGGACAACCATGATA 60.066 52.381 0.00 0.00 46.06 2.15
3808 5282 0.322456 CGTGTGGGGACAACCATGAT 60.322 55.000 0.00 0.00 46.06 2.45
3809 5283 1.072332 CGTGTGGGGACAACCATGA 59.928 57.895 0.00 0.00 46.06 3.07
3810 5284 0.322456 ATCGTGTGGGGACAACCATG 60.322 55.000 0.00 0.00 46.06 3.66
3811 5285 0.035439 GATCGTGTGGGGACAACCAT 60.035 55.000 0.00 0.00 46.06 3.55
3812 5286 1.373435 GATCGTGTGGGGACAACCA 59.627 57.895 0.00 0.00 46.06 3.67
3813 5287 0.035439 ATGATCGTGTGGGGACAACC 60.035 55.000 0.00 0.00 46.06 3.77
3814 5288 2.093658 AGTATGATCGTGTGGGGACAAC 60.094 50.000 0.00 0.00 46.06 3.32
3815 5289 2.167693 GAGTATGATCGTGTGGGGACAA 59.832 50.000 0.00 0.00 46.06 3.18
3840 5334 5.132312 ACATCATGTGAGATCAAAGAGGGAT 59.868 40.000 0.00 0.00 0.00 3.85
3881 5377 7.653311 ACTTGCTAGATTTTTGGATCAAAACAC 59.347 33.333 1.04 3.87 42.02 3.32
3883 5379 9.129209 GTACTTGCTAGATTTTTGGATCAAAAC 57.871 33.333 1.04 0.00 42.02 2.43
3893 5389 8.082242 GGTTGTTCATGTACTTGCTAGATTTTT 58.918 33.333 1.04 0.00 0.00 1.94
3903 5399 4.739716 GCTTTGTGGTTGTTCATGTACTTG 59.260 41.667 4.01 2.36 0.00 3.16
3905 5401 3.003275 CGCTTTGTGGTTGTTCATGTACT 59.997 43.478 4.01 0.00 0.00 2.73
3920 5416 3.446873 TGGGATATTGCAAATCGCTTTGT 59.553 39.130 24.65 4.97 43.07 2.83
3929 5425 4.957954 AGAGAGCATTTGGGATATTGCAAA 59.042 37.500 1.71 0.00 37.56 3.68
3965 5461 3.228188 TCAACAAGGTTCAATCAGCCT 57.772 42.857 0.00 0.00 0.00 4.58
3992 5488 4.982241 AACCCACAAGATGAGAAGAGAA 57.018 40.909 0.00 0.00 0.00 2.87
4032 5528 4.079500 TGGCATATATCCCTTGTGGTTTGA 60.080 41.667 0.00 0.00 34.77 2.69
4034 5530 4.534647 TGGCATATATCCCTTGTGGTTT 57.465 40.909 0.00 0.00 34.77 3.27
4059 5555 4.684724 ACCCAGTGGACTACTATCTTTGA 58.315 43.478 11.95 0.00 37.60 2.69
4114 5610 4.879197 TCAATATCGATGGTGATGCTCT 57.121 40.909 8.54 0.00 0.00 4.09
4122 5618 5.049198 GCACAATGACATCAATATCGATGGT 60.049 40.000 8.54 0.00 45.87 3.55
4133 5629 1.805943 CTTGGTCGCACAATGACATCA 59.194 47.619 0.00 0.00 38.10 3.07
4156 5652 0.687920 TGGCACTCATACGTTGGGAA 59.312 50.000 0.00 0.00 0.00 3.97
4157 5653 0.687920 TTGGCACTCATACGTTGGGA 59.312 50.000 0.00 0.00 0.00 4.37
4173 5669 8.592105 TGCTTTCTCAAGATTTGTAAATTTGG 57.408 30.769 0.00 0.00 30.57 3.28
4179 5675 6.208644 GCTGTTGCTTTCTCAAGATTTGTAA 58.791 36.000 0.00 0.00 36.03 2.41
4180 5676 5.762045 GCTGTTGCTTTCTCAAGATTTGTA 58.238 37.500 0.00 0.00 36.03 2.41
4201 5697 4.038271 TCCAAACATCATCCTTGAAGCT 57.962 40.909 0.00 0.00 34.96 3.74
4217 5713 3.902881 AAGTGTTGCACCAAATCCAAA 57.097 38.095 0.00 0.00 34.49 3.28
4225 5721 6.577103 TCAAATATTCAAAAGTGTTGCACCA 58.423 32.000 0.00 0.00 34.49 4.17
4235 5731 6.015519 TGCCCCCGATATCAAATATTCAAAAG 60.016 38.462 3.12 0.00 0.00 2.27
4253 5749 0.246360 GAGGAAAAACATTGCCCCCG 59.754 55.000 0.00 0.00 0.00 5.73
4269 5765 0.179020 TGTGCACTTGGTCTTGGAGG 60.179 55.000 19.41 0.00 0.00 4.30
4280 5778 2.549064 TACTGTGAGCATGTGCACTT 57.451 45.000 19.41 9.21 45.16 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.