Multiple sequence alignment - TraesCS6A01G253300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G253300 chr6A 100.000 2918 0 0 1 2918 468475933 468473016 0.000000e+00 5389.0
1 TraesCS6A01G253300 chr6A 84.663 163 24 1 2615 2777 76580114 76579953 8.370000e-36 161.0
2 TraesCS6A01G253300 chr6B 90.191 2355 111 41 5 2298 493354994 493352699 0.000000e+00 2959.0
3 TraesCS6A01G253300 chr6D 92.261 1977 69 23 353 2290 329082879 329080948 0.000000e+00 2726.0
4 TraesCS6A01G253300 chr6D 90.778 347 11 3 5 330 329083208 329082862 7.420000e-121 444.0
5 TraesCS6A01G253300 chr3A 97.778 630 13 1 2290 2918 22610705 22610076 0.000000e+00 1085.0
6 TraesCS6A01G253300 chr3A 88.787 437 48 1 2483 2918 713538509 713538073 4.280000e-148 534.0
7 TraesCS6A01G253300 chr5B 89.871 622 42 7 2298 2918 617232349 617231748 0.000000e+00 780.0
8 TraesCS6A01G253300 chr7A 87.519 657 44 9 2289 2918 688375540 688374895 0.000000e+00 725.0
9 TraesCS6A01G253300 chr7A 93.902 164 10 0 2754 2917 729678400 729678563 6.240000e-62 248.0
10 TraesCS6A01G253300 chr4A 88.503 461 51 2 2459 2918 19174489 19174030 9.130000e-155 556.0
11 TraesCS6A01G253300 chr4A 89.560 182 18 1 2298 2478 19177995 19177814 2.260000e-56 230.0
12 TraesCS6A01G253300 chr2A 84.663 163 24 1 2615 2777 607838564 607838725 8.370000e-36 161.0
13 TraesCS6A01G253300 chr2A 79.464 112 11 6 2805 2916 607838726 607838825 5.220000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G253300 chr6A 468473016 468475933 2917 True 5389 5389 100.0000 1 2918 1 chr6A.!!$R2 2917
1 TraesCS6A01G253300 chr6B 493352699 493354994 2295 True 2959 2959 90.1910 5 2298 1 chr6B.!!$R1 2293
2 TraesCS6A01G253300 chr6D 329080948 329083208 2260 True 1585 2726 91.5195 5 2290 2 chr6D.!!$R1 2285
3 TraesCS6A01G253300 chr3A 22610076 22610705 629 True 1085 1085 97.7780 2290 2918 1 chr3A.!!$R1 628
4 TraesCS6A01G253300 chr5B 617231748 617232349 601 True 780 780 89.8710 2298 2918 1 chr5B.!!$R1 620
5 TraesCS6A01G253300 chr7A 688374895 688375540 645 True 725 725 87.5190 2289 2918 1 chr7A.!!$R1 629
6 TraesCS6A01G253300 chr4A 19174030 19177995 3965 True 393 556 89.0315 2298 2918 2 chr4A.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 340 0.46187 CGGTGATTGAGCATCCGGAA 60.462 55.0 9.01 0.0 37.92 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2141 0.249911 AACAGAAGCACCCGTCACTC 60.25 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.693622 TCGGGGTGGCAGTTTAATCA 59.306 50.000 0.00 0.00 0.00 2.57
71 72 2.092323 GGGTGGCAGTTTAATCAGTCC 58.908 52.381 0.00 0.00 0.00 3.85
177 187 0.470341 TTCGACCCCACATGTCAACA 59.530 50.000 0.00 0.00 32.91 3.33
230 240 3.891977 TCCTAGTCATGTGCTATCACTCC 59.108 47.826 0.00 0.00 43.49 3.85
312 339 1.143838 CGGTGATTGAGCATCCGGA 59.856 57.895 6.61 6.61 37.92 5.14
313 340 0.461870 CGGTGATTGAGCATCCGGAA 60.462 55.000 9.01 0.00 37.92 4.30
314 341 1.303309 GGTGATTGAGCATCCGGAAG 58.697 55.000 9.01 4.82 0.00 3.46
315 342 1.134401 GGTGATTGAGCATCCGGAAGA 60.134 52.381 9.01 0.00 0.00 2.87
316 343 2.632377 GTGATTGAGCATCCGGAAGAA 58.368 47.619 9.01 0.00 0.00 2.52
317 344 3.209410 GTGATTGAGCATCCGGAAGAAT 58.791 45.455 9.01 0.00 0.00 2.40
318 345 3.249559 GTGATTGAGCATCCGGAAGAATC 59.750 47.826 9.01 10.29 0.00 2.52
319 346 1.939974 TTGAGCATCCGGAAGAATCG 58.060 50.000 9.01 0.00 0.00 3.34
320 347 1.111277 TGAGCATCCGGAAGAATCGA 58.889 50.000 9.01 0.00 0.00 3.59
321 348 1.688735 TGAGCATCCGGAAGAATCGAT 59.311 47.619 9.01 0.00 0.00 3.59
322 349 2.064762 GAGCATCCGGAAGAATCGATG 58.935 52.381 9.01 0.00 0.00 3.84
323 350 1.414181 AGCATCCGGAAGAATCGATGT 59.586 47.619 9.01 0.00 0.00 3.06
324 351 2.158900 AGCATCCGGAAGAATCGATGTT 60.159 45.455 9.01 0.00 0.00 2.71
325 352 3.069586 AGCATCCGGAAGAATCGATGTTA 59.930 43.478 9.01 0.00 0.00 2.41
326 353 3.807622 GCATCCGGAAGAATCGATGTTAA 59.192 43.478 9.01 0.00 0.00 2.01
327 354 4.452455 GCATCCGGAAGAATCGATGTTAAT 59.548 41.667 9.01 0.00 0.00 1.40
328 355 5.615544 GCATCCGGAAGAATCGATGTTAATG 60.616 44.000 9.01 0.00 0.00 1.90
329 356 3.807622 TCCGGAAGAATCGATGTTAATGC 59.192 43.478 0.00 0.00 0.00 3.56
330 357 3.809832 CCGGAAGAATCGATGTTAATGCT 59.190 43.478 0.00 0.00 0.00 3.79
331 358 4.273480 CCGGAAGAATCGATGTTAATGCTT 59.727 41.667 0.00 0.00 0.00 3.91
332 359 5.435557 CGGAAGAATCGATGTTAATGCTTC 58.564 41.667 0.00 0.00 0.00 3.86
333 360 5.559035 CGGAAGAATCGATGTTAATGCTTCC 60.559 44.000 10.18 10.18 44.04 3.46
334 361 5.529060 GGAAGAATCGATGTTAATGCTTCCT 59.471 40.000 12.28 0.00 44.08 3.36
335 362 6.293135 GGAAGAATCGATGTTAATGCTTCCTC 60.293 42.308 12.28 0.00 44.08 3.71
336 363 5.674525 AGAATCGATGTTAATGCTTCCTCA 58.325 37.500 0.00 0.00 0.00 3.86
337 364 6.294473 AGAATCGATGTTAATGCTTCCTCAT 58.706 36.000 0.00 0.00 0.00 2.90
338 365 6.426328 AGAATCGATGTTAATGCTTCCTCATC 59.574 38.462 0.00 0.00 0.00 2.92
339 366 4.380531 TCGATGTTAATGCTTCCTCATCC 58.619 43.478 0.00 0.00 0.00 3.51
340 367 4.101585 TCGATGTTAATGCTTCCTCATCCT 59.898 41.667 0.00 0.00 0.00 3.24
341 368 4.450419 CGATGTTAATGCTTCCTCATCCTC 59.550 45.833 0.00 0.00 0.00 3.71
342 369 4.842531 TGTTAATGCTTCCTCATCCTCA 57.157 40.909 0.00 0.00 0.00 3.86
343 370 5.178096 TGTTAATGCTTCCTCATCCTCAA 57.822 39.130 0.00 0.00 0.00 3.02
344 371 5.569355 TGTTAATGCTTCCTCATCCTCAAA 58.431 37.500 0.00 0.00 0.00 2.69
345 372 6.009589 TGTTAATGCTTCCTCATCCTCAAAA 58.990 36.000 0.00 0.00 0.00 2.44
346 373 6.493115 TGTTAATGCTTCCTCATCCTCAAAAA 59.507 34.615 0.00 0.00 0.00 1.94
379 406 2.985809 CAATGTTAATGCCACACAACCG 59.014 45.455 0.00 0.00 0.00 4.44
382 409 1.807742 GTTAATGCCACACAACCGCTA 59.192 47.619 0.00 0.00 0.00 4.26
400 457 2.234168 GCTAAAATAAACCCCGGCCAAA 59.766 45.455 2.24 0.00 0.00 3.28
402 459 1.718280 AAATAAACCCCGGCCAAACA 58.282 45.000 2.24 0.00 0.00 2.83
435 492 3.731136 GCTCACGCCACTGTTTCA 58.269 55.556 0.00 0.00 0.00 2.69
461 518 9.869844 AAAAATCGATCGATCACTTAATCAATC 57.130 29.630 29.48 0.00 33.08 2.67
465 522 5.059832 CGATCGATCACTTAATCAATCGGTC 59.940 44.000 24.40 12.94 44.37 4.79
476 533 8.141909 ACTTAATCAATCGGTCGAATTATCTCA 58.858 33.333 0.00 0.00 0.00 3.27
477 534 8.880878 TTAATCAATCGGTCGAATTATCTCAA 57.119 30.769 0.00 0.00 0.00 3.02
554 611 3.151022 GAGGAGAGGCCACGGAGG 61.151 72.222 5.01 0.00 40.02 4.30
606 673 1.805254 GCCTCGGTGAGCGTAACTA 59.195 57.895 3.30 0.00 0.00 2.24
792 859 1.543429 CCGTCCTTCTTTCCTGCTTGT 60.543 52.381 0.00 0.00 0.00 3.16
793 860 2.289444 CCGTCCTTCTTTCCTGCTTGTA 60.289 50.000 0.00 0.00 0.00 2.41
794 861 3.600388 CGTCCTTCTTTCCTGCTTGTAT 58.400 45.455 0.00 0.00 0.00 2.29
818 885 0.523546 CTCACGTACAGCGCTACAGG 60.524 60.000 10.99 9.17 46.11 4.00
835 902 0.905357 AGGGCACAGATGTACACCTC 59.095 55.000 0.00 0.00 0.00 3.85
977 1057 3.329929 TTAGCTCCCGGAAGACTTTTC 57.670 47.619 0.73 0.00 0.00 2.29
988 1068 1.204312 GACTTTTCGCTGCACCGAC 59.796 57.895 3.02 0.00 36.90 4.79
1126 1206 1.617263 CGGAGGAGGACAAGGAGAAGA 60.617 57.143 0.00 0.00 0.00 2.87
1127 1207 2.541466 GGAGGAGGACAAGGAGAAGAA 58.459 52.381 0.00 0.00 0.00 2.52
1128 1208 2.499693 GGAGGAGGACAAGGAGAAGAAG 59.500 54.545 0.00 0.00 0.00 2.85
1199 1279 0.318762 GTCAAGAAGGAGGAGCACGT 59.681 55.000 0.00 0.00 0.00 4.49
1284 1364 6.561737 TCGGTAAGTGCAAACATGATTTAA 57.438 33.333 0.00 0.00 0.00 1.52
1285 1365 7.151999 TCGGTAAGTGCAAACATGATTTAAT 57.848 32.000 0.00 0.00 0.00 1.40
1286 1366 7.598278 TCGGTAAGTGCAAACATGATTTAATT 58.402 30.769 0.00 0.00 0.00 1.40
1287 1367 8.731605 TCGGTAAGTGCAAACATGATTTAATTA 58.268 29.630 0.00 0.00 0.00 1.40
1294 1374 7.696453 GTGCAAACATGATTTAATTAGTAGCGT 59.304 33.333 0.00 0.00 0.00 5.07
1315 1395 7.011828 GCGTTTTGCTGTATTATTTAGGAGA 57.988 36.000 0.00 0.00 41.73 3.71
1316 1396 7.639945 GCGTTTTGCTGTATTATTTAGGAGAT 58.360 34.615 0.00 0.00 41.73 2.75
1317 1397 8.129211 GCGTTTTGCTGTATTATTTAGGAGATT 58.871 33.333 0.00 0.00 41.73 2.40
1346 1426 1.007849 GGCACGGTTGTTGCGATTT 60.008 52.632 0.00 0.00 0.00 2.17
1407 1487 1.679153 GAAGAGGAGGAGGTGATCGAC 59.321 57.143 0.00 0.00 0.00 4.20
1606 1695 1.170290 TGACGTGAAGACAGAGGCGA 61.170 55.000 0.00 0.00 0.00 5.54
2052 2141 3.047877 GGTCCGTGAAGCCCGTTG 61.048 66.667 0.00 0.00 0.00 4.10
2077 2166 0.868406 CGGGTGCTTCTGTTTCAGTC 59.132 55.000 0.00 0.00 32.61 3.51
2079 2168 2.576615 GGGTGCTTCTGTTTCAGTCTT 58.423 47.619 0.00 0.00 32.61 3.01
2080 2169 2.952310 GGGTGCTTCTGTTTCAGTCTTT 59.048 45.455 0.00 0.00 32.61 2.52
2081 2170 3.243201 GGGTGCTTCTGTTTCAGTCTTTG 60.243 47.826 0.00 0.00 32.61 2.77
2082 2171 3.627577 GGTGCTTCTGTTTCAGTCTTTGA 59.372 43.478 0.00 0.00 32.61 2.69
2094 2190 4.425772 TCAGTCTTTGAAGGTCCTGGATA 58.574 43.478 0.00 0.00 31.34 2.59
2103 2199 5.437060 TGAAGGTCCTGGATATTGTTAAGC 58.563 41.667 0.00 0.00 0.00 3.09
2187 2286 1.961793 TTCCGCCCAGTACATATTGC 58.038 50.000 0.00 0.00 0.00 3.56
2193 2292 2.030540 GCCCAGTACATATTGCTGCATG 60.031 50.000 1.84 1.00 0.00 4.06
2224 2323 8.575565 AAGATATATAGCGTATATTGTTGCGG 57.424 34.615 6.25 0.00 33.60 5.69
2225 2324 7.713750 AGATATATAGCGTATATTGTTGCGGT 58.286 34.615 6.25 0.00 38.59 5.68
2226 2325 8.195436 AGATATATAGCGTATATTGTTGCGGTT 58.805 33.333 6.25 0.00 36.47 4.44
2260 2361 5.514914 GCCGGAAATATATTGTTGTGTTGTG 59.485 40.000 5.05 0.00 0.00 3.33
2262 2363 6.089476 CGGAAATATATTGTTGTGTTGTGCA 58.911 36.000 0.00 0.00 0.00 4.57
2290 2391 2.571212 TGTTGCTCGAAAGATGGTGTT 58.429 42.857 0.00 0.00 40.84 3.32
2573 6029 2.225117 CCAATTCTTGACCCCCTTCACT 60.225 50.000 0.00 0.00 0.00 3.41
2873 6355 4.415596 TGCAAGTTCCCAAGGATTTACAT 58.584 39.130 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.104120 GGCTGGCCGTTCTTTTGTTT 59.896 50.000 0.00 0.00 0.00 2.83
1 2 1.739667 GGCTGGCCGTTCTTTTGTT 59.260 52.632 0.00 0.00 0.00 2.83
2 3 2.200337 GGGCTGGCCGTTCTTTTGT 61.200 57.895 3.84 0.00 36.85 2.83
3 4 2.650778 GGGCTGGCCGTTCTTTTG 59.349 61.111 3.84 0.00 36.85 2.44
95 100 1.606601 GGGTGGGGTTTCCTTGCTC 60.607 63.158 0.00 0.00 36.20 4.26
196 206 1.438562 GACTAGGACGACGAGAGGGC 61.439 65.000 0.00 0.00 0.00 5.19
197 207 0.107800 TGACTAGGACGACGAGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
242 269 5.883673 TGGATTTCGTTACTAAATCAAGGGG 59.116 40.000 19.23 0.00 42.54 4.79
312 339 6.115446 TGAGGAAGCATTAACATCGATTCTT 58.885 36.000 0.00 0.00 0.00 2.52
313 340 5.674525 TGAGGAAGCATTAACATCGATTCT 58.325 37.500 0.00 0.00 0.00 2.40
314 341 5.991328 TGAGGAAGCATTAACATCGATTC 57.009 39.130 0.00 0.00 0.00 2.52
315 342 5.471456 GGATGAGGAAGCATTAACATCGATT 59.529 40.000 0.00 0.00 34.88 3.34
316 343 4.999950 GGATGAGGAAGCATTAACATCGAT 59.000 41.667 0.00 0.00 34.88 3.59
317 344 4.101585 AGGATGAGGAAGCATTAACATCGA 59.898 41.667 0.00 0.00 34.88 3.59
318 345 4.384056 AGGATGAGGAAGCATTAACATCG 58.616 43.478 0.00 0.00 34.88 3.84
319 346 5.371526 TGAGGATGAGGAAGCATTAACATC 58.628 41.667 0.00 0.00 34.02 3.06
320 347 5.378230 TGAGGATGAGGAAGCATTAACAT 57.622 39.130 0.00 0.00 0.00 2.71
321 348 4.842531 TGAGGATGAGGAAGCATTAACA 57.157 40.909 0.00 0.00 0.00 2.41
322 349 6.515272 TTTTGAGGATGAGGAAGCATTAAC 57.485 37.500 0.00 0.00 0.00 2.01
349 376 7.714377 TGTGTGGCATTAACATTGATTCTTTTT 59.286 29.630 0.00 0.00 0.00 1.94
379 406 1.476477 TGGCCGGGGTTTATTTTAGC 58.524 50.000 2.18 0.00 0.00 3.09
382 409 2.047830 TGTTTGGCCGGGGTTTATTTT 58.952 42.857 2.18 0.00 0.00 1.82
400 457 3.387374 TGAGCCATTTTGTCCACAAATGT 59.613 39.130 5.72 0.00 44.30 2.71
402 459 3.552684 CGTGAGCCATTTTGTCCACAAAT 60.553 43.478 5.72 0.00 44.30 2.32
433 490 8.419076 TGATTAAGTGATCGATCGATTTTTGA 57.581 30.769 29.89 19.89 34.60 2.69
435 492 9.869844 GATTGATTAAGTGATCGATCGATTTTT 57.130 29.630 29.89 23.63 37.26 1.94
465 522 8.283291 GGCAATACTTTAGGTTGAGATAATTCG 58.717 37.037 0.00 0.00 0.00 3.34
476 533 3.681874 GCTCTCCGGCAATACTTTAGGTT 60.682 47.826 0.00 0.00 0.00 3.50
477 534 2.158943 GCTCTCCGGCAATACTTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
606 673 3.170362 CCATGTGGAGTGGTGGGT 58.830 61.111 0.00 0.00 37.39 4.51
818 885 1.469940 CGAGAGGTGTACATCTGTGCC 60.470 57.143 14.85 1.00 37.10 5.01
850 917 0.179097 GCTGTCAAGGAGGTCGATCC 60.179 60.000 0.00 0.00 39.89 3.36
895 962 2.329267 TGTGACTGATGAAGGTGTCCT 58.671 47.619 0.00 0.00 33.87 3.85
977 1057 4.498520 AGATCGGTCGGTGCAGCG 62.499 66.667 31.22 31.22 38.65 5.18
988 1068 1.539157 TCCTCCATGATCGAGATCGG 58.461 55.000 8.37 4.98 40.63 4.18
1126 1206 0.907230 GTGACCAGCTCCTCCTCCTT 60.907 60.000 0.00 0.00 0.00 3.36
1127 1207 1.305718 GTGACCAGCTCCTCCTCCT 60.306 63.158 0.00 0.00 0.00 3.69
1128 1208 2.363172 GGTGACCAGCTCCTCCTCC 61.363 68.421 0.00 0.00 0.00 4.30
1199 1279 0.826715 CTCCTTCTTCTCGCCATCCA 59.173 55.000 0.00 0.00 0.00 3.41
1307 1387 8.258007 CGTGCCATATCCTAATAATCTCCTAAA 58.742 37.037 0.00 0.00 0.00 1.85
1309 1389 6.323996 CCGTGCCATATCCTAATAATCTCCTA 59.676 42.308 0.00 0.00 0.00 2.94
1310 1390 5.129485 CCGTGCCATATCCTAATAATCTCCT 59.871 44.000 0.00 0.00 0.00 3.69
1314 1394 5.938125 ACAACCGTGCCATATCCTAATAATC 59.062 40.000 0.00 0.00 0.00 1.75
1315 1395 5.876357 ACAACCGTGCCATATCCTAATAAT 58.124 37.500 0.00 0.00 0.00 1.28
1316 1396 5.298989 ACAACCGTGCCATATCCTAATAA 57.701 39.130 0.00 0.00 0.00 1.40
1317 1397 4.967084 ACAACCGTGCCATATCCTAATA 57.033 40.909 0.00 0.00 0.00 0.98
1332 1412 1.399727 GGTCAGAAATCGCAACAACCG 60.400 52.381 0.00 0.00 0.00 4.44
1346 1426 1.087501 CGATCACTCACGAGGTCAGA 58.912 55.000 0.00 0.00 0.00 3.27
1407 1487 2.126071 ATCACCTCGCCGTTGTCG 60.126 61.111 0.00 0.00 0.00 4.35
1539 1619 2.034879 GTCATGGTGGGTCTGCACG 61.035 63.158 0.00 0.00 0.00 5.34
2052 2141 0.249911 AACAGAAGCACCCGTCACTC 60.250 55.000 0.00 0.00 0.00 3.51
2077 2166 7.415653 GCTTAACAATATCCAGGACCTTCAAAG 60.416 40.741 0.00 0.00 0.00 2.77
2079 2168 5.885912 GCTTAACAATATCCAGGACCTTCAA 59.114 40.000 0.00 0.00 0.00 2.69
2080 2169 5.191722 AGCTTAACAATATCCAGGACCTTCA 59.808 40.000 0.00 0.00 0.00 3.02
2081 2170 5.685728 AGCTTAACAATATCCAGGACCTTC 58.314 41.667 0.00 0.00 0.00 3.46
2082 2171 5.717119 AGCTTAACAATATCCAGGACCTT 57.283 39.130 0.00 0.00 0.00 3.50
2094 2190 7.039363 TGCCCATAAGTAAACAAGCTTAACAAT 60.039 33.333 0.00 0.00 31.91 2.71
2103 2199 5.009610 ACACAAGTGCCCATAAGTAAACAAG 59.990 40.000 0.00 0.00 0.00 3.16
2187 2286 6.367149 ACGCTATATATCTTCACAACATGCAG 59.633 38.462 0.00 0.00 0.00 4.41
2226 2325 9.495572 AACAATATATTTCCGGCAAAAGAAAAA 57.504 25.926 0.00 0.00 35.72 1.94
2231 2330 6.811170 ACACAACAATATATTTCCGGCAAAAG 59.189 34.615 0.00 0.00 0.00 2.27
2239 2338 7.545265 ACATGCACAACACAACAATATATTTCC 59.455 33.333 0.00 0.00 0.00 3.13
2260 2361 5.153513 TCTTTCGAGCAACAATTAACATGC 58.846 37.500 0.00 0.00 39.06 4.06
2262 2363 6.071952 ACCATCTTTCGAGCAACAATTAACAT 60.072 34.615 0.00 0.00 0.00 2.71
2290 2391 7.001674 TGCTAAATAGACAGTCCCAAGAAAAA 58.998 34.615 0.00 0.00 0.00 1.94
2295 2396 5.091261 AGTGCTAAATAGACAGTCCCAAG 57.909 43.478 0.00 0.00 0.00 3.61
2573 6029 4.949856 GGGGATGAAGAATTTGTGAAGCTA 59.050 41.667 0.00 0.00 0.00 3.32
2715 6197 7.385267 TGTAATTTTTGGCATTAGACTGCAAT 58.615 30.769 0.00 0.00 44.12 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.