Multiple sequence alignment - TraesCS6A01G252900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G252900 chr6A 100.000 2816 0 0 1 2816 467491230 467488415 0.000000e+00 5201.0
1 TraesCS6A01G252900 chr6D 88.613 1976 142 44 22 1956 328632265 328630332 0.000000e+00 2326.0
2 TraesCS6A01G252900 chr6D 85.714 224 27 4 2560 2782 328614843 328614624 6.070000e-57 231.0
3 TraesCS6A01G252900 chr6D 86.275 51 7 0 2182 2232 65908371 65908421 3.920000e-04 56.5
4 TraesCS6A01G252900 chr6B 88.343 1201 90 22 963 2144 492495213 492494044 0.000000e+00 1397.0
5 TraesCS6A01G252900 chr6B 91.195 318 21 4 577 891 492504668 492504355 2.590000e-115 425.0
6 TraesCS6A01G252900 chr6B 86.574 216 22 4 2567 2779 492493812 492493601 6.070000e-57 231.0
7 TraesCS6A01G252900 chr6B 97.500 40 0 1 2355 2394 664477180 664477142 1.810000e-07 67.6
8 TraesCS6A01G252900 chr6B 95.122 41 1 1 2358 2398 133446834 133446795 2.340000e-06 63.9
9 TraesCS6A01G252900 chr1D 77.709 323 61 8 1 322 106292963 106292651 1.330000e-43 187.0
10 TraesCS6A01G252900 chr1D 76.606 218 39 4 49 255 404782498 404782714 2.970000e-20 110.0
11 TraesCS6A01G252900 chr2A 73.431 478 99 20 1 469 103133963 103134421 1.350000e-33 154.0
12 TraesCS6A01G252900 chr4D 77.099 262 48 6 5 255 49876940 49877200 1.050000e-29 141.0
13 TraesCS6A01G252900 chr5A 78.404 213 35 4 54 255 513915928 513915716 8.190000e-26 128.0
14 TraesCS6A01G252900 chr5A 75.714 210 33 10 55 248 596527896 596527689 3.860000e-14 89.8
15 TraesCS6A01G252900 chr5A 74.060 266 43 17 210 469 342458033 342457788 5.000000e-13 86.1
16 TraesCS6A01G252900 chr7D 76.860 242 45 6 1 231 601911083 601910842 2.940000e-25 126.0
17 TraesCS6A01G252900 chr3D 80.690 145 24 4 23 166 545825381 545825522 2.970000e-20 110.0
18 TraesCS6A01G252900 chr3D 95.238 42 0 2 2359 2398 276744300 276744341 6.510000e-07 65.8
19 TraesCS6A01G252900 chr5B 82.759 116 14 5 154 266 664418532 664418644 6.420000e-17 99.0
20 TraesCS6A01G252900 chr5B 95.122 41 1 1 2355 2395 19586438 19586477 2.340000e-06 63.9
21 TraesCS6A01G252900 chr5B 95.122 41 1 1 2359 2399 686202627 686202666 2.340000e-06 63.9
22 TraesCS6A01G252900 chr2D 74.157 267 55 5 1 256 87946026 87946289 6.420000e-17 99.0
23 TraesCS6A01G252900 chr4B 95.556 45 1 1 2355 2399 562580492 562580535 1.400000e-08 71.3
24 TraesCS6A01G252900 chr4B 84.848 66 7 1 292 354 37857601 37857666 2.340000e-06 63.9
25 TraesCS6A01G252900 chr3B 90.566 53 5 0 2508 2560 703508721 703508669 1.400000e-08 71.3
26 TraesCS6A01G252900 chr3B 97.368 38 0 1 2359 2396 46103176 46103212 2.340000e-06 63.9
27 TraesCS6A01G252900 chr3A 97.500 40 0 1 2358 2397 696229598 696229560 1.810000e-07 67.6
28 TraesCS6A01G252900 chr3A 97.368 38 0 1 2358 2395 433550677 433550641 2.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G252900 chr6A 467488415 467491230 2815 True 5201 5201 100.0000 1 2816 1 chr6A.!!$R1 2815
1 TraesCS6A01G252900 chr6D 328630332 328632265 1933 True 2326 2326 88.6130 22 1956 1 chr6D.!!$R2 1934
2 TraesCS6A01G252900 chr6B 492493601 492495213 1612 True 814 1397 87.4585 963 2779 2 chr6B.!!$R4 1816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 407 0.106419 ACGAAGCAAAAACCCTCCCA 60.106 50.0 0.00 0.0 0.0 4.37 F
656 664 0.179145 CCCGCGTACAGTTACTCCAG 60.179 60.0 4.92 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1841 0.030369 CGGTGCCCGCTACTAACTAG 59.970 60.0 0.56 0.0 41.17 2.57 R
2252 2302 0.032952 CCTTGGAGGACGACGTTTCA 59.967 55.0 0.13 0.0 37.67 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.364318 ATCACCCCTCTCTCACCG 57.636 61.111 0.00 0.00 0.00 4.94
18 19 1.381872 ATCACCCCTCTCTCACCGG 60.382 63.158 0.00 0.00 0.00 5.28
19 20 1.875422 ATCACCCCTCTCTCACCGGA 61.875 60.000 9.46 0.00 0.00 5.14
20 21 2.055042 CACCCCTCTCTCACCGGAG 61.055 68.421 9.46 0.00 42.80 4.63
47 48 9.895138 ACGGACCAAACTTTTTATAGTATACAT 57.105 29.630 5.50 0.00 0.00 2.29
81 82 0.608130 TGCTAAGACCGCACATGACT 59.392 50.000 0.00 0.00 31.40 3.41
83 84 2.159240 TGCTAAGACCGCACATGACTAG 60.159 50.000 0.00 0.00 31.40 2.57
96 97 3.008375 ACATGACTAGCACACCAGAACAT 59.992 43.478 0.00 0.00 0.00 2.71
107 108 0.798776 CCAGAACATCAACTGTCGCC 59.201 55.000 0.00 0.00 36.98 5.54
108 109 1.511850 CAGAACATCAACTGTCGCCA 58.488 50.000 0.00 0.00 36.98 5.69
116 117 2.844946 TCAACTGTCGCCAATGAAGAA 58.155 42.857 0.00 0.00 0.00 2.52
127 128 8.559536 TGTCGCCAATGAAGAAAAATATAGATC 58.440 33.333 0.00 0.00 0.00 2.75
146 147 5.659048 GATCGAAATGATCCAACCTGTAC 57.341 43.478 0.00 0.00 46.55 2.90
159 160 2.975266 ACCTGTACACACACGAACAAA 58.025 42.857 0.00 0.00 0.00 2.83
161 162 3.191669 CCTGTACACACACGAACAAAGA 58.808 45.455 0.00 0.00 0.00 2.52
162 163 3.000925 CCTGTACACACACGAACAAAGAC 59.999 47.826 0.00 0.00 0.00 3.01
190 191 0.608035 GCGGATCCACCAAAGACCAA 60.608 55.000 13.41 0.00 38.90 3.67
231 232 2.279069 CCGCCAGAGACACACCTCT 61.279 63.158 0.00 0.00 43.84 3.69
241 242 0.251474 ACACACCTCTACACGCCCTA 60.251 55.000 0.00 0.00 0.00 3.53
242 243 1.112113 CACACCTCTACACGCCCTAT 58.888 55.000 0.00 0.00 0.00 2.57
245 246 1.067212 CACCTCTACACGCCCTATGAC 59.933 57.143 0.00 0.00 0.00 3.06
247 248 1.306148 CTCTACACGCCCTATGACGA 58.694 55.000 0.00 0.00 0.00 4.20
256 257 0.592148 CCCTATGACGACGCTAGACC 59.408 60.000 0.00 0.00 0.00 3.85
259 260 1.674441 CTATGACGACGCTAGACCCAA 59.326 52.381 0.00 0.00 0.00 4.12
271 272 1.227615 GACCCAACACCGAAACCGA 60.228 57.895 0.00 0.00 0.00 4.69
272 273 0.814812 GACCCAACACCGAAACCGAA 60.815 55.000 0.00 0.00 0.00 4.30
286 287 2.694305 CGAAGGAGGGAGGGGGTA 59.306 66.667 0.00 0.00 0.00 3.69
287 288 1.457831 CGAAGGAGGGAGGGGGTAG 60.458 68.421 0.00 0.00 0.00 3.18
288 289 1.074395 GAAGGAGGGAGGGGGTAGG 60.074 68.421 0.00 0.00 0.00 3.18
290 291 4.103928 GGAGGGAGGGGGTAGGCA 62.104 72.222 0.00 0.00 0.00 4.75
343 348 1.451567 CCGCCTCGTCCTGAGTAGA 60.452 63.158 0.00 0.00 43.64 2.59
354 359 4.679905 CGTCCTGAGTAGAATACAAACCCC 60.680 50.000 0.00 0.00 46.26 4.95
355 360 3.449737 TCCTGAGTAGAATACAAACCCCG 59.550 47.826 0.00 0.00 46.26 5.73
356 361 3.195661 CTGAGTAGAATACAAACCCCGC 58.804 50.000 0.00 0.00 46.26 6.13
361 366 3.653539 AGAATACAAACCCCGCAAAAC 57.346 42.857 0.00 0.00 0.00 2.43
362 367 2.297880 AGAATACAAACCCCGCAAAACC 59.702 45.455 0.00 0.00 0.00 3.27
376 381 3.676324 CGCAAAACCTTACAAAACCACCA 60.676 43.478 0.00 0.00 0.00 4.17
400 405 2.882927 AAACGAAGCAAAAACCCTCC 57.117 45.000 0.00 0.00 0.00 4.30
402 407 0.106419 ACGAAGCAAAAACCCTCCCA 60.106 50.000 0.00 0.00 0.00 4.37
411 416 1.075601 AAACCCTCCCATCAGCAAGA 58.924 50.000 0.00 0.00 0.00 3.02
416 421 1.681166 CCTCCCATCAGCAAGAGTTGG 60.681 57.143 0.00 0.00 0.00 3.77
420 425 1.548582 CCATCAGCAAGAGTTGGGGTT 60.549 52.381 0.00 0.00 0.00 4.11
435 440 3.499737 GTTCACCGCGCCTCCATG 61.500 66.667 0.00 0.00 0.00 3.66
436 441 3.700970 TTCACCGCGCCTCCATGA 61.701 61.111 0.00 0.00 0.00 3.07
438 443 4.758251 CACCGCGCCTCCATGACA 62.758 66.667 0.00 0.00 0.00 3.58
447 453 1.202976 GCCTCCATGACATAAGGCCAT 60.203 52.381 22.22 0.00 46.97 4.40
449 455 2.420642 CTCCATGACATAAGGCCATCG 58.579 52.381 5.01 0.00 0.00 3.84
484 490 3.391382 CGGGAGGCGGAGAAACCT 61.391 66.667 0.00 0.00 39.65 3.50
485 491 2.955881 CGGGAGGCGGAGAAACCTT 61.956 63.158 0.00 0.00 36.05 3.50
497 503 4.449405 CGGAGAAACCTTGAGTTCTTTCTC 59.551 45.833 9.52 9.52 44.10 2.87
501 507 6.113411 AGAAACCTTGAGTTCTTTCTCGAAA 58.887 36.000 0.00 0.00 37.88 3.46
502 508 6.768381 AGAAACCTTGAGTTCTTTCTCGAAAT 59.232 34.615 0.00 0.00 37.88 2.17
508 514 4.283467 TGAGTTCTTTCTCGAAATGGGAGA 59.717 41.667 0.00 0.00 38.71 3.71
509 515 5.046304 TGAGTTCTTTCTCGAAATGGGAGAT 60.046 40.000 0.00 0.00 40.05 2.75
514 520 1.502163 CTCGAAATGGGAGATGGCGC 61.502 60.000 0.00 0.00 33.27 6.53
515 521 1.524621 CGAAATGGGAGATGGCGCT 60.525 57.895 7.64 0.00 0.00 5.92
516 522 1.779025 CGAAATGGGAGATGGCGCTG 61.779 60.000 7.64 0.00 0.00 5.18
517 523 2.068277 GAAATGGGAGATGGCGCTGC 62.068 60.000 7.64 0.00 0.00 5.25
518 524 4.923942 ATGGGAGATGGCGCTGCG 62.924 66.667 19.17 19.17 0.00 5.18
521 527 4.521062 GGAGATGGCGCTGCGTCT 62.521 66.667 27.61 19.76 30.55 4.18
522 528 2.413351 GAGATGGCGCTGCGTCTA 59.587 61.111 27.61 15.66 30.55 2.59
523 529 1.226974 GAGATGGCGCTGCGTCTAA 60.227 57.895 27.61 8.84 30.55 2.10
524 530 0.598680 GAGATGGCGCTGCGTCTAAT 60.599 55.000 27.61 13.79 30.55 1.73
525 531 0.598680 AGATGGCGCTGCGTCTAATC 60.599 55.000 27.61 21.35 30.55 1.75
526 532 1.560860 GATGGCGCTGCGTCTAATCC 61.561 60.000 27.61 16.76 30.55 3.01
527 533 3.330853 GGCGCTGCGTCTAATCCG 61.331 66.667 24.04 0.00 0.00 4.18
528 534 2.582498 GCGCTGCGTCTAATCCGT 60.582 61.111 24.04 0.00 0.00 4.69
529 535 2.860628 GCGCTGCGTCTAATCCGTG 61.861 63.158 24.04 0.00 0.00 4.94
530 536 2.860628 CGCTGCGTCTAATCCGTGC 61.861 63.158 14.93 0.00 0.00 5.34
531 537 1.519455 GCTGCGTCTAATCCGTGCT 60.519 57.895 0.00 0.00 0.00 4.40
534 540 0.800683 TGCGTCTAATCCGTGCTTCG 60.801 55.000 0.00 0.00 39.52 3.79
547 553 2.429930 CTTCGGTGCTTGGGACCA 59.570 61.111 8.77 0.00 32.45 4.02
609 617 7.552459 TCTTGGTTATGTCGATATCTCAAACA 58.448 34.615 0.00 0.00 0.00 2.83
621 629 6.128661 CGATATCTCAAACAAACCGTCAAGAA 60.129 38.462 0.34 0.00 0.00 2.52
633 641 5.845391 ACCGTCAAGAAAAATGAGGAAAA 57.155 34.783 0.00 0.00 35.30 2.29
639 647 7.097192 GTCAAGAAAAATGAGGAAAATACCCC 58.903 38.462 0.00 0.00 0.00 4.95
656 664 0.179145 CCCGCGTACAGTTACTCCAG 60.179 60.000 4.92 0.00 0.00 3.86
691 699 4.263677 CAGCCAAATTTGATCACGATTTCG 59.736 41.667 19.86 8.02 46.33 3.46
706 714 5.430220 CGATTTCGTTAACTTGATCACGA 57.570 39.130 6.16 2.91 39.80 4.35
707 715 5.472822 CGATTTCGTTAACTTGATCACGAG 58.527 41.667 6.16 0.00 42.26 4.18
708 716 5.498700 CGATTTCGTTAACTTGATCACGAGG 60.499 44.000 6.16 0.00 42.26 4.63
709 717 2.602878 TCGTTAACTTGATCACGAGGC 58.397 47.619 6.16 0.00 36.76 4.70
710 718 1.320555 CGTTAACTTGATCACGAGGCG 59.679 52.381 6.16 1.76 34.49 5.52
711 719 1.060698 GTTAACTTGATCACGAGGCGC 59.939 52.381 6.16 0.00 32.13 6.53
771 779 0.466124 GGCTATCCACTCCACTCCAC 59.534 60.000 0.00 0.00 0.00 4.02
794 802 1.681264 CCCAACAGAAATATTCCCCGC 59.319 52.381 0.00 0.00 0.00 6.13
929 940 4.147449 TCAGCCCACTCGCATCGG 62.147 66.667 0.00 0.00 0.00 4.18
955 966 2.678336 CCATTTAAACGCTCACCTCTCC 59.322 50.000 0.00 0.00 0.00 3.71
977 996 0.323451 TCCGAGCTCTGCAGTTAGGA 60.323 55.000 14.67 13.31 33.11 2.94
982 1001 1.216444 CTCTGCAGTTAGGAGCGCA 59.784 57.895 14.67 0.00 35.33 6.09
1139 1167 2.418334 GCAAGTACTTCCCCGGTAAGAG 60.418 54.545 18.00 5.49 0.00 2.85
1509 1537 0.683504 TCCTCTTCAGCTCCGGGTAC 60.684 60.000 0.00 0.00 0.00 3.34
1676 1705 3.003763 GCTGGAGGTCCCGGAGTT 61.004 66.667 0.73 0.00 44.44 3.01
1807 1836 4.649310 TGCGCTCGTTACGGTGCA 62.649 61.111 22.79 22.79 44.92 4.57
1808 1837 3.186047 GCGCTCGTTACGGTGCAT 61.186 61.111 20.42 0.00 38.62 3.96
1810 1839 1.516386 CGCTCGTTACGGTGCATCT 60.516 57.895 18.87 0.00 0.00 2.90
1811 1840 1.472276 CGCTCGTTACGGTGCATCTC 61.472 60.000 18.87 0.00 0.00 2.75
1812 1841 1.146358 GCTCGTTACGGTGCATCTCC 61.146 60.000 15.59 0.00 0.00 3.71
1813 1842 0.456221 CTCGTTACGGTGCATCTCCT 59.544 55.000 4.53 0.00 0.00 3.69
1814 1843 1.674441 CTCGTTACGGTGCATCTCCTA 59.326 52.381 4.53 0.00 0.00 2.94
1815 1844 1.674441 TCGTTACGGTGCATCTCCTAG 59.326 52.381 4.53 0.00 0.00 3.02
1816 1845 1.404391 CGTTACGGTGCATCTCCTAGT 59.596 52.381 0.00 0.00 0.00 2.57
1817 1846 2.159282 CGTTACGGTGCATCTCCTAGTT 60.159 50.000 0.00 0.00 0.00 2.24
1818 1847 3.065786 CGTTACGGTGCATCTCCTAGTTA 59.934 47.826 0.00 0.00 0.00 2.24
1819 1848 4.608951 GTTACGGTGCATCTCCTAGTTAG 58.391 47.826 0.00 0.00 0.00 2.34
1876 1922 5.362430 AGGCCTCTTGATGTTTGTTTGTAAA 59.638 36.000 0.00 0.00 0.00 2.01
1877 1923 6.045955 GGCCTCTTGATGTTTGTTTGTAAAA 58.954 36.000 0.00 0.00 0.00 1.52
1926 1973 6.431198 GTGAAACTGTGGAAGTAACAAGAA 57.569 37.500 0.00 0.00 38.56 2.52
1930 1977 8.617809 TGAAACTGTGGAAGTAACAAGAAATAC 58.382 33.333 0.00 0.00 38.56 1.89
1965 2012 4.553429 CGATAATTCGGAATAATTTGCGGC 59.447 41.667 3.22 0.00 45.53 6.53
1966 2013 2.793278 ATTCGGAATAATTTGCGGCC 57.207 45.000 0.34 0.00 45.53 6.13
1967 2014 0.741915 TTCGGAATAATTTGCGGCCC 59.258 50.000 0.00 0.00 45.53 5.80
1968 2015 1.008995 CGGAATAATTTGCGGCCCG 60.009 57.895 0.00 0.00 42.26 6.13
1971 2020 2.693250 GAATAATTTGCGGCCCGGCC 62.693 60.000 19.64 19.64 46.75 6.13
1982 2031 3.814268 CCCGGCCATTGCGTTCTG 61.814 66.667 2.24 0.00 38.85 3.02
1997 2046 1.194772 GTTCTGCACCTAAAGCACGAC 59.805 52.381 0.00 0.00 37.02 4.34
2005 2054 3.002791 ACCTAAAGCACGACATCATGTG 58.997 45.455 0.00 0.00 39.10 3.21
2032 2082 2.164827 GGTTGAAACCGTTGAACCACTT 59.835 45.455 15.88 0.00 46.83 3.16
2033 2083 3.175929 GTTGAAACCGTTGAACCACTTG 58.824 45.455 0.00 0.00 0.00 3.16
2036 2086 2.335316 AACCGTTGAACCACTTGCTA 57.665 45.000 0.00 0.00 0.00 3.49
2038 2088 2.218603 ACCGTTGAACCACTTGCTAAG 58.781 47.619 0.00 0.00 0.00 2.18
2050 2100 5.354234 ACCACTTGCTAAGGTGAAATTATCG 59.646 40.000 0.00 0.00 35.69 2.92
2055 2105 5.050490 TGCTAAGGTGAAATTATCGAGAGC 58.950 41.667 0.00 0.00 0.00 4.09
2056 2106 4.149046 GCTAAGGTGAAATTATCGAGAGCG 59.851 45.833 0.00 0.00 39.35 5.03
2057 2107 3.802948 AGGTGAAATTATCGAGAGCGT 57.197 42.857 0.00 0.00 38.98 5.07
2059 2109 5.258456 AGGTGAAATTATCGAGAGCGTTA 57.742 39.130 0.00 0.00 38.98 3.18
2061 2111 6.103997 AGGTGAAATTATCGAGAGCGTTAAA 58.896 36.000 0.00 0.00 35.89 1.52
2064 2114 6.408325 GTGAAATTATCGAGAGCGTTAAAAGC 59.592 38.462 0.00 0.00 35.89 3.51
2067 2117 3.999229 ATCGAGAGCGTTAAAAGCTTG 57.001 42.857 0.00 0.00 46.13 4.01
2074 2124 1.401539 GCGTTAAAAGCTTGGAGCCAG 60.402 52.381 0.00 0.00 43.77 4.85
2076 2126 0.881118 TTAAAAGCTTGGAGCCAGCG 59.119 50.000 0.00 0.00 43.77 5.18
2082 2132 1.603455 CTTGGAGCCAGCGGGAAAA 60.603 57.895 7.23 0.00 35.59 2.29
2144 2194 4.814967 AGGTTTCTCCCCAAATGAAAGAA 58.185 39.130 0.00 0.00 36.75 2.52
2145 2195 4.588951 AGGTTTCTCCCCAAATGAAAGAAC 59.411 41.667 0.00 0.00 36.75 3.01
2146 2196 4.343814 GGTTTCTCCCCAAATGAAAGAACA 59.656 41.667 0.00 0.00 31.48 3.18
2147 2197 5.509670 GGTTTCTCCCCAAATGAAAGAACAG 60.510 44.000 0.00 0.00 31.48 3.16
2148 2198 3.766545 TCTCCCCAAATGAAAGAACAGG 58.233 45.455 0.00 0.00 0.00 4.00
2149 2199 2.827921 CTCCCCAAATGAAAGAACAGGG 59.172 50.000 0.00 0.00 34.41 4.45
2151 2201 1.276138 CCCAAATGAAAGAACAGGGGC 59.724 52.381 0.00 0.00 0.00 5.80
2152 2202 1.969923 CCAAATGAAAGAACAGGGGCA 59.030 47.619 0.00 0.00 0.00 5.36
2153 2203 2.568509 CCAAATGAAAGAACAGGGGCAT 59.431 45.455 0.00 0.00 0.00 4.40
2154 2204 3.008266 CCAAATGAAAGAACAGGGGCATT 59.992 43.478 0.00 0.00 0.00 3.56
2155 2205 4.248058 CAAATGAAAGAACAGGGGCATTC 58.752 43.478 0.00 0.00 0.00 2.67
2156 2206 1.533625 TGAAAGAACAGGGGCATTCG 58.466 50.000 0.00 0.00 0.00 3.34
2157 2207 1.073125 TGAAAGAACAGGGGCATTCGA 59.927 47.619 0.00 0.00 0.00 3.71
2158 2208 2.159382 GAAAGAACAGGGGCATTCGAA 58.841 47.619 0.00 0.00 0.00 3.71
2159 2209 2.286365 AAGAACAGGGGCATTCGAAA 57.714 45.000 0.00 0.00 0.00 3.46
2160 2210 2.286365 AGAACAGGGGCATTCGAAAA 57.714 45.000 0.00 0.00 0.00 2.29
2161 2211 2.807676 AGAACAGGGGCATTCGAAAAT 58.192 42.857 0.00 0.00 0.00 1.82
2162 2212 2.755103 AGAACAGGGGCATTCGAAAATC 59.245 45.455 0.00 0.00 0.00 2.17
2163 2213 1.474330 ACAGGGGCATTCGAAAATCC 58.526 50.000 0.00 3.47 0.00 3.01
2164 2214 1.272425 ACAGGGGCATTCGAAAATCCA 60.272 47.619 0.00 0.00 0.00 3.41
2165 2215 2.034124 CAGGGGCATTCGAAAATCCAT 58.966 47.619 0.00 0.00 0.00 3.41
2166 2216 3.221771 CAGGGGCATTCGAAAATCCATA 58.778 45.455 0.00 0.00 0.00 2.74
2167 2217 3.254166 CAGGGGCATTCGAAAATCCATAG 59.746 47.826 0.00 0.00 0.00 2.23
2168 2218 2.029918 GGGGCATTCGAAAATCCATAGC 60.030 50.000 0.00 0.00 0.00 2.97
2169 2219 2.887152 GGGCATTCGAAAATCCATAGCT 59.113 45.455 0.00 0.00 0.00 3.32
2170 2220 3.304928 GGGCATTCGAAAATCCATAGCTG 60.305 47.826 0.00 0.00 0.00 4.24
2171 2221 3.565482 GGCATTCGAAAATCCATAGCTGA 59.435 43.478 0.00 0.00 0.00 4.26
2172 2222 4.217118 GGCATTCGAAAATCCATAGCTGAT 59.783 41.667 0.00 0.00 0.00 2.90
2173 2223 5.388944 GCATTCGAAAATCCATAGCTGATC 58.611 41.667 0.00 0.00 0.00 2.92
2174 2224 5.049198 GCATTCGAAAATCCATAGCTGATCA 60.049 40.000 0.00 0.00 0.00 2.92
2175 2225 5.991328 TTCGAAAATCCATAGCTGATCAC 57.009 39.130 0.00 0.00 0.00 3.06
2176 2226 5.022282 TCGAAAATCCATAGCTGATCACA 57.978 39.130 0.00 0.00 0.00 3.58
2177 2227 5.427378 TCGAAAATCCATAGCTGATCACAA 58.573 37.500 0.00 0.00 0.00 3.33
2178 2228 5.525012 TCGAAAATCCATAGCTGATCACAAG 59.475 40.000 0.00 0.00 0.00 3.16
2179 2229 5.511234 AAAATCCATAGCTGATCACAAGC 57.489 39.130 0.00 0.00 0.00 4.01
2180 2230 4.434545 AATCCATAGCTGATCACAAGCT 57.565 40.909 12.09 12.09 42.12 3.74
2181 2231 3.465742 TCCATAGCTGATCACAAGCTC 57.534 47.619 10.91 0.00 39.79 4.09
2182 2232 2.767960 TCCATAGCTGATCACAAGCTCA 59.232 45.455 10.91 0.53 39.79 4.26
2183 2233 3.390311 TCCATAGCTGATCACAAGCTCAT 59.610 43.478 10.91 2.55 39.79 2.90
2184 2234 3.747010 CCATAGCTGATCACAAGCTCATC 59.253 47.826 10.91 0.00 39.79 2.92
2185 2235 4.503469 CCATAGCTGATCACAAGCTCATCT 60.503 45.833 10.91 0.00 39.79 2.90
2186 2236 2.907634 AGCTGATCACAAGCTCATCTG 58.092 47.619 2.24 0.00 32.98 2.90
2187 2237 1.331138 GCTGATCACAAGCTCATCTGC 59.669 52.381 0.00 9.49 35.28 4.26
2188 2238 2.907634 CTGATCACAAGCTCATCTGCT 58.092 47.619 0.00 0.00 46.40 4.24
2189 2239 2.867368 CTGATCACAAGCTCATCTGCTC 59.133 50.000 0.00 0.00 43.24 4.26
2190 2240 2.211806 GATCACAAGCTCATCTGCTCC 58.788 52.381 0.00 0.00 43.24 4.70
2191 2241 0.251354 TCACAAGCTCATCTGCTCCC 59.749 55.000 0.00 0.00 43.24 4.30
2192 2242 1.088340 CACAAGCTCATCTGCTCCCG 61.088 60.000 0.00 0.00 43.24 5.14
2193 2243 1.523258 CAAGCTCATCTGCTCCCGG 60.523 63.158 0.00 0.00 43.24 5.73
2194 2244 1.687146 AAGCTCATCTGCTCCCGGA 60.687 57.895 0.73 0.00 43.24 5.14
2195 2245 1.053264 AAGCTCATCTGCTCCCGGAT 61.053 55.000 0.73 0.00 43.24 4.18
2202 2252 2.088104 TCTGCTCCCGGATGAATAGT 57.912 50.000 0.73 0.00 0.00 2.12
2203 2253 3.238788 TCTGCTCCCGGATGAATAGTA 57.761 47.619 0.73 0.00 0.00 1.82
2204 2254 3.572642 TCTGCTCCCGGATGAATAGTAA 58.427 45.455 0.73 0.00 0.00 2.24
2205 2255 3.964688 TCTGCTCCCGGATGAATAGTAAA 59.035 43.478 0.73 0.00 0.00 2.01
2206 2256 4.593206 TCTGCTCCCGGATGAATAGTAAAT 59.407 41.667 0.73 0.00 0.00 1.40
2207 2257 5.071788 TCTGCTCCCGGATGAATAGTAAATT 59.928 40.000 0.73 0.00 0.00 1.82
2208 2258 5.305585 TGCTCCCGGATGAATAGTAAATTC 58.694 41.667 0.73 0.00 0.00 2.17
2209 2259 5.163248 TGCTCCCGGATGAATAGTAAATTCA 60.163 40.000 0.73 3.13 41.59 2.57
2210 2260 5.763204 GCTCCCGGATGAATAGTAAATTCAA 59.237 40.000 0.73 0.00 40.84 2.69
2211 2261 6.262273 GCTCCCGGATGAATAGTAAATTCAAA 59.738 38.462 0.73 0.00 40.84 2.69
2212 2262 7.201785 GCTCCCGGATGAATAGTAAATTCAAAA 60.202 37.037 0.73 0.00 40.84 2.44
2213 2263 8.220755 TCCCGGATGAATAGTAAATTCAAAAG 57.779 34.615 0.73 0.40 40.84 2.27
2214 2264 8.050325 TCCCGGATGAATAGTAAATTCAAAAGA 58.950 33.333 0.73 0.00 40.84 2.52
2215 2265 8.682710 CCCGGATGAATAGTAAATTCAAAAGAA 58.317 33.333 0.73 0.00 40.84 2.52
2245 2295 9.985730 AGCAAAGAGAAATTCAAAACAATATGA 57.014 25.926 0.00 0.00 0.00 2.15
2259 2309 9.965748 CAAAACAATATGAAGTTTTTGAAACGT 57.034 25.926 9.80 0.00 43.26 3.99
2261 2311 7.603297 ACAATATGAAGTTTTTGAAACGTCG 57.397 32.000 12.43 0.00 32.55 5.12
2262 2312 7.190871 ACAATATGAAGTTTTTGAAACGTCGT 58.809 30.769 15.03 15.03 32.55 4.34
2263 2313 7.375017 ACAATATGAAGTTTTTGAAACGTCGTC 59.625 33.333 14.39 0.00 32.55 4.20
2264 2314 4.006026 TGAAGTTTTTGAAACGTCGTCC 57.994 40.909 0.00 0.00 32.55 4.79
2265 2315 3.685756 TGAAGTTTTTGAAACGTCGTCCT 59.314 39.130 0.00 0.00 32.55 3.85
2266 2316 3.938778 AGTTTTTGAAACGTCGTCCTC 57.061 42.857 0.00 0.00 0.00 3.71
2267 2317 2.610833 AGTTTTTGAAACGTCGTCCTCC 59.389 45.455 0.00 0.00 0.00 4.30
2268 2318 2.312722 TTTTGAAACGTCGTCCTCCA 57.687 45.000 0.00 0.00 0.00 3.86
2269 2319 2.312722 TTTGAAACGTCGTCCTCCAA 57.687 45.000 0.00 0.00 0.00 3.53
2270 2320 1.860676 TTGAAACGTCGTCCTCCAAG 58.139 50.000 0.00 0.00 0.00 3.61
2271 2321 0.032952 TGAAACGTCGTCCTCCAAGG 59.967 55.000 0.00 0.00 36.46 3.61
2272 2322 0.669625 GAAACGTCGTCCTCCAAGGG 60.670 60.000 0.00 0.00 35.59 3.95
2273 2323 1.117142 AAACGTCGTCCTCCAAGGGA 61.117 55.000 0.00 0.00 35.59 4.20
2274 2324 1.117142 AACGTCGTCCTCCAAGGGAA 61.117 55.000 0.00 0.00 37.10 3.97
2309 2359 7.487829 TGAAAATGAACTGTACAAGAAACAAGC 59.512 33.333 0.00 0.00 0.00 4.01
2332 2383 6.496911 AGCCAGAAATGTAAAAGGTTGGTATT 59.503 34.615 0.00 0.00 0.00 1.89
2350 2401 4.812626 GGTATTACCATGGTAAGTTGGTCG 59.187 45.833 34.31 0.00 42.61 4.79
2355 2406 3.275143 CCATGGTAAGTTGGTCGCATAA 58.725 45.455 2.57 0.00 0.00 1.90
2356 2407 3.064820 CCATGGTAAGTTGGTCGCATAAC 59.935 47.826 2.57 0.00 0.00 1.89
2358 2409 3.945346 TGGTAAGTTGGTCGCATAACAT 58.055 40.909 0.00 0.00 0.00 2.71
2360 2411 4.189231 GGTAAGTTGGTCGCATAACATCT 58.811 43.478 0.00 0.00 0.00 2.90
2361 2412 5.105269 TGGTAAGTTGGTCGCATAACATCTA 60.105 40.000 0.00 0.00 0.00 1.98
2362 2413 5.813672 GGTAAGTTGGTCGCATAACATCTAA 59.186 40.000 0.00 0.00 0.00 2.10
2363 2414 6.314400 GGTAAGTTGGTCGCATAACATCTAAA 59.686 38.462 0.00 0.00 0.00 1.85
2364 2415 7.012044 GGTAAGTTGGTCGCATAACATCTAAAT 59.988 37.037 0.00 0.00 0.00 1.40
2367 2418 8.142994 AGTTGGTCGCATAACATCTAAATAAG 57.857 34.615 0.00 0.00 0.00 1.73
2368 2419 7.985184 AGTTGGTCGCATAACATCTAAATAAGA 59.015 33.333 0.00 0.00 39.02 2.10
2369 2420 7.709269 TGGTCGCATAACATCTAAATAAGAC 57.291 36.000 0.00 0.00 36.93 3.01
2370 2421 7.497595 TGGTCGCATAACATCTAAATAAGACT 58.502 34.615 0.00 0.00 36.93 3.24
2371 2422 7.985184 TGGTCGCATAACATCTAAATAAGACTT 59.015 33.333 0.00 0.00 36.93 3.01
2372 2423 9.472361 GGTCGCATAACATCTAAATAAGACTTA 57.528 33.333 0.00 0.00 36.93 2.24
2399 2450 4.388378 AGAAACGGAGGAAGTAGTATGC 57.612 45.455 0.00 0.00 0.00 3.14
2400 2451 3.767673 AGAAACGGAGGAAGTAGTATGCA 59.232 43.478 0.00 0.00 0.00 3.96
2401 2452 3.802948 AACGGAGGAAGTAGTATGCAG 57.197 47.619 0.00 0.00 0.00 4.41
2402 2453 2.032620 ACGGAGGAAGTAGTATGCAGG 58.967 52.381 0.00 0.00 0.00 4.85
2403 2454 1.341531 CGGAGGAAGTAGTATGCAGGG 59.658 57.143 0.00 0.00 0.00 4.45
2404 2455 1.070914 GGAGGAAGTAGTATGCAGGGC 59.929 57.143 0.00 0.00 0.00 5.19
2405 2456 1.762957 GAGGAAGTAGTATGCAGGGCA 59.237 52.381 0.00 0.00 44.86 5.36
2406 2457 1.486726 AGGAAGTAGTATGCAGGGCAC 59.513 52.381 0.00 0.00 43.04 5.01
2407 2458 1.209504 GGAAGTAGTATGCAGGGCACA 59.790 52.381 0.00 0.00 43.04 4.57
2408 2459 2.158755 GGAAGTAGTATGCAGGGCACAT 60.159 50.000 0.00 0.00 43.04 3.21
2409 2460 2.627515 AGTAGTATGCAGGGCACATG 57.372 50.000 0.00 0.00 43.04 3.21
2410 2461 0.947244 GTAGTATGCAGGGCACATGC 59.053 55.000 5.09 5.09 43.04 4.06
2411 2462 0.839277 TAGTATGCAGGGCACATGCT 59.161 50.000 11.96 9.37 43.04 3.79
2412 2463 0.465097 AGTATGCAGGGCACATGCTC 60.465 55.000 11.96 0.00 43.04 4.26
2420 2471 2.338577 GGGCACATGCTCTATGACTT 57.661 50.000 3.48 0.00 39.21 3.01
2421 2472 3.475566 GGGCACATGCTCTATGACTTA 57.524 47.619 3.48 0.00 39.21 2.24
2422 2473 4.013267 GGGCACATGCTCTATGACTTAT 57.987 45.455 3.48 0.00 39.21 1.73
2423 2474 5.152623 GGGCACATGCTCTATGACTTATA 57.847 43.478 3.48 0.00 39.21 0.98
2424 2475 4.932200 GGGCACATGCTCTATGACTTATAC 59.068 45.833 3.48 0.00 39.21 1.47
2425 2476 5.279708 GGGCACATGCTCTATGACTTATACT 60.280 44.000 3.48 0.00 39.21 2.12
2426 2477 5.636965 GGCACATGCTCTATGACTTATACTG 59.363 44.000 3.48 0.00 39.21 2.74
2427 2478 5.119898 GCACATGCTCTATGACTTATACTGC 59.880 44.000 0.00 0.00 39.21 4.40
2428 2479 6.453943 CACATGCTCTATGACTTATACTGCT 58.546 40.000 0.00 0.00 39.21 4.24
2429 2480 6.365518 CACATGCTCTATGACTTATACTGCTG 59.634 42.308 0.00 0.00 39.21 4.41
2430 2481 4.876125 TGCTCTATGACTTATACTGCTGC 58.124 43.478 0.00 0.00 0.00 5.25
2431 2482 4.586421 TGCTCTATGACTTATACTGCTGCT 59.414 41.667 0.00 0.00 0.00 4.24
2432 2483 4.922692 GCTCTATGACTTATACTGCTGCTG 59.077 45.833 4.89 4.89 0.00 4.41
2433 2484 5.278709 GCTCTATGACTTATACTGCTGCTGA 60.279 44.000 13.69 0.00 0.00 4.26
2434 2485 6.572119 GCTCTATGACTTATACTGCTGCTGAT 60.572 42.308 13.69 5.35 0.00 2.90
2435 2486 7.362487 GCTCTATGACTTATACTGCTGCTGATA 60.362 40.741 13.69 4.47 0.00 2.15
2436 2487 8.409358 TCTATGACTTATACTGCTGCTGATAA 57.591 34.615 13.69 10.91 0.00 1.75
2437 2488 8.300286 TCTATGACTTATACTGCTGCTGATAAC 58.700 37.037 13.69 3.99 0.00 1.89
2438 2489 5.281727 TGACTTATACTGCTGCTGATAACG 58.718 41.667 13.69 8.87 0.00 3.18
2439 2490 4.621991 ACTTATACTGCTGCTGATAACGG 58.378 43.478 13.69 5.45 0.00 4.44
2440 2491 4.099573 ACTTATACTGCTGCTGATAACGGT 59.900 41.667 13.69 5.93 0.00 4.83
2441 2492 2.579207 TACTGCTGCTGATAACGGTC 57.421 50.000 13.69 0.00 0.00 4.79
2442 2493 0.608130 ACTGCTGCTGATAACGGTCA 59.392 50.000 13.69 0.00 0.00 4.02
2443 2494 1.001974 ACTGCTGCTGATAACGGTCAA 59.998 47.619 13.69 0.00 0.00 3.18
2444 2495 2.076100 CTGCTGCTGATAACGGTCAAA 58.924 47.619 0.00 0.00 0.00 2.69
2445 2496 1.804151 TGCTGCTGATAACGGTCAAAC 59.196 47.619 0.00 0.00 0.00 2.93
2446 2497 1.804151 GCTGCTGATAACGGTCAAACA 59.196 47.619 0.00 0.00 0.00 2.83
2447 2498 2.412847 GCTGCTGATAACGGTCAAACAC 60.413 50.000 0.00 0.00 0.00 3.32
2448 2499 2.805671 CTGCTGATAACGGTCAAACACA 59.194 45.455 0.00 0.00 0.00 3.72
2449 2500 2.805671 TGCTGATAACGGTCAAACACAG 59.194 45.455 0.00 0.00 0.00 3.66
2450 2501 2.159627 GCTGATAACGGTCAAACACAGG 59.840 50.000 0.00 0.00 0.00 4.00
2451 2502 3.399330 CTGATAACGGTCAAACACAGGT 58.601 45.455 0.00 0.00 0.00 4.00
2452 2503 4.562082 CTGATAACGGTCAAACACAGGTA 58.438 43.478 0.00 0.00 0.00 3.08
2453 2504 4.958509 TGATAACGGTCAAACACAGGTAA 58.041 39.130 0.00 0.00 0.00 2.85
2454 2505 4.992319 TGATAACGGTCAAACACAGGTAAG 59.008 41.667 0.00 0.00 0.00 2.34
2455 2506 3.547054 AACGGTCAAACACAGGTAAGA 57.453 42.857 0.00 0.00 0.00 2.10
2456 2507 3.107642 ACGGTCAAACACAGGTAAGAG 57.892 47.619 0.00 0.00 0.00 2.85
2457 2508 2.696707 ACGGTCAAACACAGGTAAGAGA 59.303 45.455 0.00 0.00 0.00 3.10
2458 2509 3.133362 ACGGTCAAACACAGGTAAGAGAA 59.867 43.478 0.00 0.00 0.00 2.87
2459 2510 4.202326 ACGGTCAAACACAGGTAAGAGAAT 60.202 41.667 0.00 0.00 0.00 2.40
2460 2511 5.011329 ACGGTCAAACACAGGTAAGAGAATA 59.989 40.000 0.00 0.00 0.00 1.75
2461 2512 5.347907 CGGTCAAACACAGGTAAGAGAATAC 59.652 44.000 0.00 0.00 0.00 1.89
2462 2513 5.347907 GGTCAAACACAGGTAAGAGAATACG 59.652 44.000 0.00 0.00 0.00 3.06
2463 2514 5.347907 GTCAAACACAGGTAAGAGAATACGG 59.652 44.000 0.00 0.00 0.00 4.02
2464 2515 5.244402 TCAAACACAGGTAAGAGAATACGGA 59.756 40.000 0.00 0.00 0.00 4.69
2465 2516 5.733620 AACACAGGTAAGAGAATACGGAA 57.266 39.130 0.00 0.00 0.00 4.30
2466 2517 5.326200 ACACAGGTAAGAGAATACGGAAG 57.674 43.478 0.00 0.00 0.00 3.46
2467 2518 4.159879 ACACAGGTAAGAGAATACGGAAGG 59.840 45.833 0.00 0.00 0.00 3.46
2468 2519 4.401519 CACAGGTAAGAGAATACGGAAGGA 59.598 45.833 0.00 0.00 0.00 3.36
2469 2520 5.069251 CACAGGTAAGAGAATACGGAAGGAT 59.931 44.000 0.00 0.00 34.80 3.24
2470 2521 5.069251 ACAGGTAAGAGAATACGGAAGGATG 59.931 44.000 0.00 0.00 32.52 3.51
2471 2522 4.039366 AGGTAAGAGAATACGGAAGGATGC 59.961 45.833 0.00 0.00 32.52 3.91
2472 2523 4.039366 GGTAAGAGAATACGGAAGGATGCT 59.961 45.833 0.00 0.00 45.67 3.79
2473 2524 3.742433 AGAGAATACGGAAGGATGCTG 57.258 47.619 0.00 0.00 41.82 4.41
2474 2525 2.366916 AGAGAATACGGAAGGATGCTGG 59.633 50.000 0.00 0.00 41.82 4.85
2480 2531 1.342074 CGGAAGGATGCTGGATAGGA 58.658 55.000 0.00 0.00 0.00 2.94
2483 2534 3.131933 CGGAAGGATGCTGGATAGGATAG 59.868 52.174 0.00 0.00 34.85 2.08
2503 2554 3.874392 GCCCATTGCTAATTGTTCTGT 57.126 42.857 0.00 0.00 36.87 3.41
2504 2555 4.981806 GCCCATTGCTAATTGTTCTGTA 57.018 40.909 0.00 0.00 36.87 2.74
2506 2557 6.633500 GCCCATTGCTAATTGTTCTGTATA 57.367 37.500 0.00 0.00 36.87 1.47
2508 2559 8.335532 GCCCATTGCTAATTGTTCTGTATATA 57.664 34.615 0.00 0.00 36.87 0.86
2509 2560 8.454106 GCCCATTGCTAATTGTTCTGTATATAG 58.546 37.037 0.00 0.00 36.87 1.31
2521 2572 9.952030 TTGTTCTGTATATAGTCATTTGTTGGA 57.048 29.630 0.00 0.00 0.00 3.53
2525 2576 8.768397 TCTGTATATAGTCATTTGTTGGAACCT 58.232 33.333 0.00 0.00 0.00 3.50
2532 2583 7.654022 AGTCATTTGTTGGAACCTTTAGAAA 57.346 32.000 0.00 0.00 0.00 2.52
2533 2584 7.716612 AGTCATTTGTTGGAACCTTTAGAAAG 58.283 34.615 0.00 0.00 35.79 2.62
2535 2586 7.648112 GTCATTTGTTGGAACCTTTAGAAAGAC 59.352 37.037 3.52 0.00 38.28 3.01
2536 2587 7.559897 TCATTTGTTGGAACCTTTAGAAAGACT 59.440 33.333 3.52 0.00 38.28 3.24
2537 2588 7.712204 TTTGTTGGAACCTTTAGAAAGACTT 57.288 32.000 3.52 0.00 38.28 3.01
2538 2589 8.810990 TTTGTTGGAACCTTTAGAAAGACTTA 57.189 30.769 3.52 0.00 38.28 2.24
2539 2590 8.990163 TTGTTGGAACCTTTAGAAAGACTTAT 57.010 30.769 3.52 0.00 38.28 1.73
2545 2596 9.043079 GGAACCTTTAGAAAGACTTATATTCGG 57.957 37.037 3.52 0.00 38.28 4.30
2546 2597 8.959705 AACCTTTAGAAAGACTTATATTCGGG 57.040 34.615 3.52 0.00 38.28 5.14
2547 2598 8.315220 ACCTTTAGAAAGACTTATATTCGGGA 57.685 34.615 3.52 0.00 38.28 5.14
2549 2600 9.043079 CCTTTAGAAAGACTTATATTCGGGAAC 57.957 37.037 3.52 0.00 38.28 3.62
2550 2601 9.595823 CTTTAGAAAGACTTATATTCGGGAACA 57.404 33.333 0.00 0.00 38.28 3.18
2551 2602 9.595823 TTTAGAAAGACTTATATTCGGGAACAG 57.404 33.333 0.00 0.00 0.00 3.16
2552 2603 7.419711 AGAAAGACTTATATTCGGGAACAGA 57.580 36.000 0.00 0.00 0.00 3.41
2554 2605 7.982354 AGAAAGACTTATATTCGGGAACAGAAG 59.018 37.037 0.00 0.00 0.00 2.85
2555 2606 6.163135 AGACTTATATTCGGGAACAGAAGG 57.837 41.667 0.00 0.00 0.00 3.46
2556 2607 5.897824 AGACTTATATTCGGGAACAGAAGGA 59.102 40.000 0.00 0.00 0.00 3.36
2557 2608 6.041069 AGACTTATATTCGGGAACAGAAGGAG 59.959 42.308 0.00 0.00 0.00 3.69
2558 2609 5.661759 ACTTATATTCGGGAACAGAAGGAGT 59.338 40.000 0.00 0.00 0.00 3.85
2559 2610 6.837568 ACTTATATTCGGGAACAGAAGGAGTA 59.162 38.462 0.00 0.00 0.00 2.59
2560 2611 5.793030 ATATTCGGGAACAGAAGGAGTAG 57.207 43.478 0.00 0.00 0.00 2.57
2562 2613 0.895530 CGGGAACAGAAGGAGTAGCA 59.104 55.000 0.00 0.00 0.00 3.49
2563 2614 1.275291 CGGGAACAGAAGGAGTAGCAA 59.725 52.381 0.00 0.00 0.00 3.91
2565 2616 2.615747 GGGAACAGAAGGAGTAGCAACC 60.616 54.545 0.00 0.00 0.00 3.77
2574 2636 1.229082 AGTAGCAACCGGGGTCAGA 60.229 57.895 6.32 0.00 0.00 3.27
2591 2653 3.004734 GTCAGAACACCATTGTTGGGAAG 59.995 47.826 0.00 0.00 46.43 3.46
2621 2683 4.438472 CCAGTAGCGGAGTTGAACTACTAC 60.438 50.000 17.87 17.87 42.56 2.73
2625 2687 2.490903 GCGGAGTTGAACTACTACAGGA 59.509 50.000 5.94 0.00 0.00 3.86
2651 2713 4.468095 ACGACAAAGTGAGCAAATGTAC 57.532 40.909 0.00 0.00 0.00 2.90
2657 2719 5.050363 ACAAAGTGAGCAAATGTACGTACTG 60.050 40.000 25.12 16.51 0.00 2.74
2663 2725 2.348666 GCAAATGTACGTACTGCCTCTG 59.651 50.000 25.12 14.35 0.00 3.35
2674 2736 6.558909 ACGTACTGCCTCTGTAAACTAATAC 58.441 40.000 0.00 0.00 0.00 1.89
2742 2807 2.267642 GGCACAGGCGTACATGGA 59.732 61.111 0.00 0.00 42.47 3.41
2746 2811 2.494059 GCACAGGCGTACATGGATATT 58.506 47.619 0.00 0.00 0.00 1.28
2751 2816 5.050363 CACAGGCGTACATGGATATTAACAC 60.050 44.000 0.00 0.00 0.00 3.32
2753 2818 5.177511 CAGGCGTACATGGATATTAACACAG 59.822 44.000 0.00 0.00 0.00 3.66
2773 2838 8.029642 ACACAGTAAGTTAAATCTGTATGTGC 57.970 34.615 4.76 0.00 38.79 4.57
2779 2844 9.931210 GTAAGTTAAATCTGTATGTGCAATACC 57.069 33.333 13.15 0.00 0.00 2.73
2780 2845 8.807948 AAGTTAAATCTGTATGTGCAATACCT 57.192 30.769 13.15 2.65 0.00 3.08
2781 2846 8.438676 AGTTAAATCTGTATGTGCAATACCTC 57.561 34.615 13.15 0.00 0.00 3.85
2782 2847 8.046708 AGTTAAATCTGTATGTGCAATACCTCA 58.953 33.333 13.15 0.00 0.00 3.86
2783 2848 8.673711 GTTAAATCTGTATGTGCAATACCTCAA 58.326 33.333 13.15 0.00 0.00 3.02
2784 2849 7.701539 AAATCTGTATGTGCAATACCTCAAA 57.298 32.000 13.15 0.00 0.00 2.69
2785 2850 7.701539 AATCTGTATGTGCAATACCTCAAAA 57.298 32.000 13.15 0.00 0.00 2.44
2786 2851 7.886629 ATCTGTATGTGCAATACCTCAAAAT 57.113 32.000 13.15 0.00 0.00 1.82
2787 2852 7.087409 TCTGTATGTGCAATACCTCAAAATG 57.913 36.000 13.15 0.00 0.00 2.32
2788 2853 6.883756 TCTGTATGTGCAATACCTCAAAATGA 59.116 34.615 13.15 0.00 0.00 2.57
2789 2854 7.066163 TCTGTATGTGCAATACCTCAAAATGAG 59.934 37.037 13.15 0.32 43.91 2.90
2790 2855 4.439305 TGTGCAATACCTCAAAATGAGC 57.561 40.909 1.79 0.00 42.98 4.26
2791 2856 3.825585 TGTGCAATACCTCAAAATGAGCA 59.174 39.130 1.79 0.00 42.98 4.26
2792 2857 4.280425 TGTGCAATACCTCAAAATGAGCAA 59.720 37.500 1.79 0.00 42.98 3.91
2793 2858 5.221402 TGTGCAATACCTCAAAATGAGCAAA 60.221 36.000 1.79 0.00 42.98 3.68
2794 2859 5.870978 GTGCAATACCTCAAAATGAGCAAAT 59.129 36.000 1.79 0.00 42.98 2.32
2795 2860 6.369615 GTGCAATACCTCAAAATGAGCAAATT 59.630 34.615 1.79 0.00 42.98 1.82
2796 2861 7.545265 GTGCAATACCTCAAAATGAGCAAATTA 59.455 33.333 1.79 0.00 42.98 1.40
2797 2862 8.093307 TGCAATACCTCAAAATGAGCAAATTAA 58.907 29.630 1.79 0.00 42.98 1.40
2798 2863 8.382875 GCAATACCTCAAAATGAGCAAATTAAC 58.617 33.333 1.79 0.00 42.98 2.01
2799 2864 9.421806 CAATACCTCAAAATGAGCAAATTAACA 57.578 29.630 1.79 0.00 42.98 2.41
2801 2866 7.894376 ACCTCAAAATGAGCAAATTAACATG 57.106 32.000 1.79 0.00 42.98 3.21
2802 2867 7.444299 ACCTCAAAATGAGCAAATTAACATGT 58.556 30.769 0.00 0.00 42.98 3.21
2803 2868 7.385752 ACCTCAAAATGAGCAAATTAACATGTG 59.614 33.333 0.00 0.00 42.98 3.21
2804 2869 7.385752 CCTCAAAATGAGCAAATTAACATGTGT 59.614 33.333 0.00 0.00 42.98 3.72
2805 2870 8.296799 TCAAAATGAGCAAATTAACATGTGTC 57.703 30.769 0.00 0.00 0.00 3.67
2806 2871 7.924947 TCAAAATGAGCAAATTAACATGTGTCA 59.075 29.630 0.00 0.00 0.00 3.58
2807 2872 8.549548 CAAAATGAGCAAATTAACATGTGTCAA 58.450 29.630 0.00 0.00 0.00 3.18
2808 2873 7.878477 AATGAGCAAATTAACATGTGTCAAG 57.122 32.000 0.00 0.00 0.00 3.02
2809 2874 6.389830 TGAGCAAATTAACATGTGTCAAGT 57.610 33.333 0.00 0.00 0.00 3.16
2810 2875 7.503521 TGAGCAAATTAACATGTGTCAAGTA 57.496 32.000 0.00 0.00 0.00 2.24
2811 2876 7.935520 TGAGCAAATTAACATGTGTCAAGTAA 58.064 30.769 0.00 0.00 0.00 2.24
2812 2877 7.860373 TGAGCAAATTAACATGTGTCAAGTAAC 59.140 33.333 0.00 0.00 0.00 2.50
2813 2878 7.711846 AGCAAATTAACATGTGTCAAGTAACA 58.288 30.769 0.00 0.00 0.00 2.41
2814 2879 7.862372 AGCAAATTAACATGTGTCAAGTAACAG 59.138 33.333 0.00 0.00 0.00 3.16
2815 2880 7.647715 GCAAATTAACATGTGTCAAGTAACAGT 59.352 33.333 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.381872 CCGGTGAGAGAGGGGTGAT 60.382 63.158 0.00 0.00 0.00 3.06
1 2 2.037367 CCGGTGAGAGAGGGGTGA 59.963 66.667 0.00 0.00 0.00 4.02
2 3 2.037367 TCCGGTGAGAGAGGGGTG 59.963 66.667 0.00 0.00 0.00 4.61
3 4 2.239439 TCTCCGGTGAGAGAGGGGT 61.239 63.158 0.00 0.00 42.73 4.95
4 5 2.684104 TCTCCGGTGAGAGAGGGG 59.316 66.667 0.00 0.00 42.73 4.79
16 17 1.589803 AAAAGTTTGGTCCGTCTCCG 58.410 50.000 0.00 0.00 0.00 4.63
17 18 5.936372 ACTATAAAAAGTTTGGTCCGTCTCC 59.064 40.000 0.00 0.00 0.00 3.71
18 19 8.713737 ATACTATAAAAAGTTTGGTCCGTCTC 57.286 34.615 0.00 0.00 0.00 3.36
19 20 9.591792 GTATACTATAAAAAGTTTGGTCCGTCT 57.408 33.333 0.00 0.00 0.00 4.18
20 21 9.369904 TGTATACTATAAAAAGTTTGGTCCGTC 57.630 33.333 4.17 0.00 0.00 4.79
47 48 5.408356 GTCTTAGCACGATGACTTCCTAAA 58.592 41.667 0.00 0.00 0.00 1.85
49 50 3.380637 GGTCTTAGCACGATGACTTCCTA 59.619 47.826 0.00 0.00 0.00 2.94
50 51 2.166664 GGTCTTAGCACGATGACTTCCT 59.833 50.000 0.00 0.00 0.00 3.36
76 77 3.261643 TGATGTTCTGGTGTGCTAGTCAT 59.738 43.478 0.00 0.00 0.00 3.06
77 78 2.632512 TGATGTTCTGGTGTGCTAGTCA 59.367 45.455 0.00 0.00 0.00 3.41
81 82 3.181455 ACAGTTGATGTTCTGGTGTGCTA 60.181 43.478 0.00 0.00 39.96 3.49
83 84 1.949525 ACAGTTGATGTTCTGGTGTGC 59.050 47.619 0.00 0.00 39.96 4.57
96 97 2.542020 TCTTCATTGGCGACAGTTGA 57.458 45.000 2.08 2.08 44.54 3.18
127 128 4.000325 TGTGTACAGGTTGGATCATTTCG 59.000 43.478 0.00 0.00 0.00 3.46
132 133 2.547007 CGTGTGTGTACAGGTTGGATCA 60.547 50.000 0.00 0.00 37.52 2.92
146 147 3.059597 GGATCAGTCTTTGTTCGTGTGTG 60.060 47.826 0.00 0.00 0.00 3.82
182 183 2.702592 TTCAGTCGGTGTTGGTCTTT 57.297 45.000 0.00 0.00 0.00 2.52
190 191 2.264794 GCGGGATTCAGTCGGTGT 59.735 61.111 0.00 0.00 0.00 4.16
217 218 1.401670 GCGTGTAGAGGTGTGTCTCTG 60.402 57.143 4.80 0.00 43.32 3.35
220 221 1.533469 GGGCGTGTAGAGGTGTGTCT 61.533 60.000 0.00 0.00 0.00 3.41
231 232 1.723273 CGTCGTCATAGGGCGTGTA 59.277 57.895 0.00 0.00 0.00 2.90
241 242 0.172803 GTTGGGTCTAGCGTCGTCAT 59.827 55.000 0.00 0.00 0.00 3.06
242 243 1.174078 TGTTGGGTCTAGCGTCGTCA 61.174 55.000 0.00 0.00 0.00 4.35
245 246 1.445582 GGTGTTGGGTCTAGCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
247 248 1.466025 TTCGGTGTTGGGTCTAGCGT 61.466 55.000 0.00 0.00 36.75 5.07
256 257 0.533308 TCCTTCGGTTTCGGTGTTGG 60.533 55.000 0.00 0.00 36.95 3.77
259 260 1.370064 CCTCCTTCGGTTTCGGTGT 59.630 57.895 0.00 0.00 36.95 4.16
271 272 3.129976 CCTACCCCCTCCCTCCTT 58.870 66.667 0.00 0.00 0.00 3.36
272 273 3.780275 GCCTACCCCCTCCCTCCT 61.780 72.222 0.00 0.00 0.00 3.69
275 276 4.109656 CCTGCCTACCCCCTCCCT 62.110 72.222 0.00 0.00 0.00 4.20
277 278 4.103928 TCCCTGCCTACCCCCTCC 62.104 72.222 0.00 0.00 0.00 4.30
283 284 1.875488 TAAGGTTCTCCCTGCCTACC 58.125 55.000 0.00 0.00 45.47 3.18
285 286 4.008916 AGAATAAGGTTCTCCCTGCCTA 57.991 45.455 0.00 0.00 45.47 3.93
286 287 2.852130 AGAATAAGGTTCTCCCTGCCT 58.148 47.619 0.00 0.00 45.47 4.75
287 288 4.595350 AGATAGAATAAGGTTCTCCCTGCC 59.405 45.833 0.00 0.00 45.47 4.85
288 289 5.279758 GGAGATAGAATAAGGTTCTCCCTGC 60.280 48.000 6.08 0.00 45.47 4.85
330 333 4.159135 GGGTTTGTATTCTACTCAGGACGA 59.841 45.833 0.00 0.00 0.00 4.20
331 334 4.430908 GGGTTTGTATTCTACTCAGGACG 58.569 47.826 0.00 0.00 0.00 4.79
332 335 4.679905 CGGGGTTTGTATTCTACTCAGGAC 60.680 50.000 0.00 0.00 0.00 3.85
334 337 3.793559 CGGGGTTTGTATTCTACTCAGG 58.206 50.000 0.00 0.00 0.00 3.86
335 338 3.195661 GCGGGGTTTGTATTCTACTCAG 58.804 50.000 0.00 0.00 0.00 3.35
336 339 2.568062 TGCGGGGTTTGTATTCTACTCA 59.432 45.455 0.00 0.00 0.00 3.41
343 348 2.321719 AGGTTTTGCGGGGTTTGTATT 58.678 42.857 0.00 0.00 0.00 1.89
354 359 2.861335 GGTGGTTTTGTAAGGTTTTGCG 59.139 45.455 0.00 0.00 0.00 4.85
355 360 3.863041 TGGTGGTTTTGTAAGGTTTTGC 58.137 40.909 0.00 0.00 0.00 3.68
356 361 6.803154 TTTTGGTGGTTTTGTAAGGTTTTG 57.197 33.333 0.00 0.00 0.00 2.44
392 397 1.005215 CTCTTGCTGATGGGAGGGTTT 59.995 52.381 0.00 0.00 0.00 3.27
399 404 2.877975 CCCAACTCTTGCTGATGGG 58.122 57.895 0.00 0.00 44.38 4.00
400 405 0.038744 ACCCCAACTCTTGCTGATGG 59.961 55.000 0.00 0.00 0.00 3.51
402 407 1.425066 TGAACCCCAACTCTTGCTGAT 59.575 47.619 0.00 0.00 0.00 2.90
420 425 4.451150 GTCATGGAGGCGCGGTGA 62.451 66.667 8.83 0.00 0.00 4.02
431 436 2.549064 TCGATGGCCTTATGTCATGG 57.451 50.000 3.32 0.00 0.00 3.66
432 437 3.732212 TCTTCGATGGCCTTATGTCATG 58.268 45.455 3.32 0.00 0.00 3.07
435 440 4.932200 CCTTATCTTCGATGGCCTTATGTC 59.068 45.833 3.32 0.00 0.00 3.06
436 441 4.804261 GCCTTATCTTCGATGGCCTTATGT 60.804 45.833 3.32 0.00 37.81 2.29
438 443 3.617531 CGCCTTATCTTCGATGGCCTTAT 60.618 47.826 3.32 0.00 40.40 1.73
447 453 1.731433 CCGGTCCGCCTTATCTTCGA 61.731 60.000 5.50 0.00 0.00 3.71
449 455 1.594564 GCCGGTCCGCCTTATCTTC 60.595 63.158 5.50 0.00 0.00 2.87
469 475 0.391793 CTCAAGGTTTCTCCGCCTCC 60.392 60.000 0.00 0.00 41.99 4.30
473 479 2.171341 AGAACTCAAGGTTTCTCCGC 57.829 50.000 0.00 0.00 41.99 5.54
475 481 4.449405 CGAGAAAGAACTCAAGGTTTCTCC 59.551 45.833 14.81 0.00 46.48 3.71
476 482 5.290386 TCGAGAAAGAACTCAAGGTTTCTC 58.710 41.667 11.84 11.84 46.05 2.87
479 485 6.238759 CCATTTCGAGAAAGAACTCAAGGTTT 60.239 38.462 4.54 0.00 36.80 3.27
484 490 4.968259 TCCCATTTCGAGAAAGAACTCAA 58.032 39.130 4.54 0.00 36.80 3.02
485 491 4.283467 TCTCCCATTTCGAGAAAGAACTCA 59.717 41.667 4.54 0.00 36.80 3.41
497 503 1.524621 AGCGCCATCTCCCATTTCG 60.525 57.895 2.29 0.00 0.00 3.46
501 507 4.923942 CGCAGCGCCATCTCCCAT 62.924 66.667 2.29 0.00 0.00 4.00
508 514 1.595382 GGATTAGACGCAGCGCCAT 60.595 57.895 16.61 3.16 0.00 4.40
509 515 2.202878 GGATTAGACGCAGCGCCA 60.203 61.111 16.61 0.00 0.00 5.69
514 520 0.924090 GAAGCACGGATTAGACGCAG 59.076 55.000 0.00 0.00 34.00 5.18
515 521 0.800683 CGAAGCACGGATTAGACGCA 60.801 55.000 0.00 0.00 38.46 5.24
516 522 1.917921 CGAAGCACGGATTAGACGC 59.082 57.895 0.00 0.00 38.46 5.19
526 532 3.726517 CCCAAGCACCGAAGCACG 61.727 66.667 2.02 0.00 42.18 5.34
527 533 2.281484 TCCCAAGCACCGAAGCAC 60.281 61.111 2.02 0.00 36.85 4.40
528 534 2.281484 GTCCCAAGCACCGAAGCA 60.281 61.111 2.02 0.00 36.85 3.91
529 535 3.056328 GGTCCCAAGCACCGAAGC 61.056 66.667 0.00 0.00 0.00 3.86
530 536 0.251916 TATGGTCCCAAGCACCGAAG 59.748 55.000 0.00 0.00 36.61 3.79
531 537 0.035820 GTATGGTCCCAAGCACCGAA 60.036 55.000 0.00 0.00 36.61 4.30
534 540 0.679960 GGTGTATGGTCCCAAGCACC 60.680 60.000 19.77 19.77 42.62 5.01
588 596 7.407337 GGTTTGTTTGAGATATCGACATAACC 58.593 38.462 18.27 18.27 31.28 2.85
596 604 5.347635 TCTTGACGGTTTGTTTGAGATATCG 59.652 40.000 0.00 0.00 0.00 2.92
609 617 5.845391 TTCCTCATTTTTCTTGACGGTTT 57.155 34.783 0.00 0.00 0.00 3.27
621 629 2.425668 CGCGGGGTATTTTCCTCATTTT 59.574 45.455 0.00 0.00 0.00 1.82
633 641 1.678101 GAGTAACTGTACGCGGGGTAT 59.322 52.381 12.47 0.00 35.20 2.73
639 647 0.109458 TGCTGGAGTAACTGTACGCG 60.109 55.000 3.53 3.53 35.20 6.01
691 699 1.060698 GCGCCTCGTGATCAAGTTAAC 59.939 52.381 8.54 0.00 0.00 2.01
694 702 1.005037 TGCGCCTCGTGATCAAGTT 60.005 52.632 4.18 0.00 0.00 2.66
696 704 1.153765 TCTGCGCCTCGTGATCAAG 60.154 57.895 4.18 0.00 0.00 3.02
697 705 1.446099 GTCTGCGCCTCGTGATCAA 60.446 57.895 4.18 0.00 0.00 2.57
698 706 2.181777 GTCTGCGCCTCGTGATCA 59.818 61.111 4.18 0.00 0.00 2.92
699 707 2.583593 GGTCTGCGCCTCGTGATC 60.584 66.667 4.18 0.00 0.00 2.92
700 708 4.498520 CGGTCTGCGCCTCGTGAT 62.499 66.667 4.18 0.00 0.00 3.06
722 730 2.668550 AGTTCCCGGCGTTTCTGC 60.669 61.111 6.01 0.00 0.00 4.26
753 761 0.466124 GGTGGAGTGGAGTGGATAGC 59.534 60.000 0.00 0.00 0.00 2.97
781 789 4.200092 GGAGGATATGCGGGGAATATTTC 58.800 47.826 0.00 0.00 0.00 2.17
929 940 2.538939 GGTGAGCGTTTAAATGGCGATC 60.539 50.000 9.42 8.48 40.77 3.69
977 996 2.037702 TGTGTTGTGTGTGTGCGCT 61.038 52.632 9.73 0.00 0.00 5.92
982 1001 2.358582 CCATGATGTGTGTTGTGTGTGT 59.641 45.455 0.00 0.00 0.00 3.72
1021 1049 4.695231 CGGCTCGGTCGTCACGTT 62.695 66.667 0.00 0.00 0.00 3.99
1139 1167 5.001874 GCTATGGCCTATGGGTTAACTAAC 58.998 45.833 3.32 0.00 35.50 2.34
1421 1449 3.569049 AAGTAGACGGCGCGCAGTT 62.569 57.895 35.74 25.85 0.00 3.16
1422 1450 3.966026 GAAGTAGACGGCGCGCAGT 62.966 63.158 36.01 36.01 0.00 4.40
1749 1778 4.505217 GCGGCGTCGAACATGCAG 62.505 66.667 16.53 0.00 39.02 4.41
1798 1827 4.275810 ACTAACTAGGAGATGCACCGTAA 58.724 43.478 0.00 0.00 0.00 3.18
1800 1829 2.736347 ACTAACTAGGAGATGCACCGT 58.264 47.619 0.00 0.00 0.00 4.83
1807 1836 2.158505 TGCCCGCTACTAACTAGGAGAT 60.159 50.000 0.00 0.00 36.31 2.75
1808 1837 1.213678 TGCCCGCTACTAACTAGGAGA 59.786 52.381 0.00 0.00 36.31 3.71
1810 1839 1.396653 GTGCCCGCTACTAACTAGGA 58.603 55.000 0.00 0.00 0.00 2.94
1811 1840 0.388294 GGTGCCCGCTACTAACTAGG 59.612 60.000 0.00 0.00 0.00 3.02
1812 1841 0.030369 CGGTGCCCGCTACTAACTAG 59.970 60.000 0.56 0.00 41.17 2.57
1813 1842 2.109431 CGGTGCCCGCTACTAACTA 58.891 57.895 0.56 0.00 41.17 2.24
1814 1843 2.890371 CGGTGCCCGCTACTAACT 59.110 61.111 0.56 0.00 41.17 2.24
1835 1864 2.840572 TGCTAAGCGGGGCCGATA 60.841 61.111 0.00 0.00 42.83 2.92
1844 1873 0.179062 ATCAAGAGGCCTGCTAAGCG 60.179 55.000 12.00 0.00 0.00 4.68
1894 1941 6.231211 ACTTCCACAGTTTCACTAATACCAG 58.769 40.000 0.00 0.00 27.32 4.00
1896 1943 7.658575 TGTTACTTCCACAGTTTCACTAATACC 59.341 37.037 0.00 0.00 36.88 2.73
1897 1944 8.597662 TGTTACTTCCACAGTTTCACTAATAC 57.402 34.615 0.00 0.00 36.88 1.89
1900 1947 7.332557 TCTTGTTACTTCCACAGTTTCACTAA 58.667 34.615 0.00 0.00 36.88 2.24
1902 1949 5.741011 TCTTGTTACTTCCACAGTTTCACT 58.259 37.500 0.00 0.00 36.88 3.41
1903 1950 6.431198 TTCTTGTTACTTCCACAGTTTCAC 57.569 37.500 0.00 0.00 36.88 3.18
1904 1951 7.639113 ATTTCTTGTTACTTCCACAGTTTCA 57.361 32.000 0.00 0.00 36.88 2.69
1905 1952 8.617809 TGTATTTCTTGTTACTTCCACAGTTTC 58.382 33.333 0.00 0.00 36.88 2.78
1907 1954 8.514330 TTGTATTTCTTGTTACTTCCACAGTT 57.486 30.769 0.00 0.00 36.88 3.16
1917 1964 9.968743 CGGTCTCTTTATTGTATTTCTTGTTAC 57.031 33.333 0.00 0.00 0.00 2.50
1918 1965 9.932207 TCGGTCTCTTTATTGTATTTCTTGTTA 57.068 29.630 0.00 0.00 0.00 2.41
1919 1966 8.842358 TCGGTCTCTTTATTGTATTTCTTGTT 57.158 30.769 0.00 0.00 0.00 2.83
1952 1999 1.299850 GCCGGGCCGCAAATTATTC 60.300 57.895 23.20 0.00 0.00 1.75
1965 2012 3.814268 CAGAACGCAATGGCCGGG 61.814 66.667 2.18 0.00 36.38 5.73
1966 2013 4.481112 GCAGAACGCAATGGCCGG 62.481 66.667 0.00 0.00 41.79 6.13
1980 2029 1.394917 GATGTCGTGCTTTAGGTGCAG 59.605 52.381 0.00 0.00 41.41 4.41
1982 2031 1.438651 TGATGTCGTGCTTTAGGTGC 58.561 50.000 0.00 0.00 0.00 5.01
1997 2046 4.396166 GGTTTCAACCCTAGACACATGATG 59.604 45.833 0.00 0.00 43.43 3.07
2005 2054 3.116079 TCAACGGTTTCAACCCTAGAC 57.884 47.619 3.02 0.00 46.53 2.59
2007 2056 2.551032 GGTTCAACGGTTTCAACCCTAG 59.449 50.000 16.02 0.00 46.53 3.02
2009 2058 1.341187 TGGTTCAACGGTTTCAACCCT 60.341 47.619 20.94 0.00 46.53 4.34
2012 2061 3.175929 CAAGTGGTTCAACGGTTTCAAC 58.824 45.455 0.00 0.00 0.00 3.18
2013 2062 2.416162 GCAAGTGGTTCAACGGTTTCAA 60.416 45.455 0.00 0.00 0.00 2.69
2023 2073 3.569194 TTCACCTTAGCAAGTGGTTCA 57.431 42.857 0.00 0.00 30.72 3.18
2032 2082 5.050490 GCTCTCGATAATTTCACCTTAGCA 58.950 41.667 0.00 0.00 0.00 3.49
2033 2083 4.149046 CGCTCTCGATAATTTCACCTTAGC 59.851 45.833 0.00 0.00 38.10 3.09
2036 2086 4.124851 ACGCTCTCGATAATTTCACCTT 57.875 40.909 0.00 0.00 39.41 3.50
2038 2088 5.961395 TTAACGCTCTCGATAATTTCACC 57.039 39.130 0.00 0.00 39.41 4.02
2050 2100 2.159639 GCTCCAAGCTTTTAACGCTCTC 60.160 50.000 0.00 0.00 38.45 3.20
2055 2105 1.401539 GCTGGCTCCAAGCTTTTAACG 60.402 52.381 0.00 0.00 41.99 3.18
2056 2106 1.401539 CGCTGGCTCCAAGCTTTTAAC 60.402 52.381 0.00 0.00 41.99 2.01
2057 2107 0.881118 CGCTGGCTCCAAGCTTTTAA 59.119 50.000 0.00 0.00 41.99 1.52
2059 2109 2.270986 CCGCTGGCTCCAAGCTTTT 61.271 57.895 0.00 0.00 41.99 2.27
2061 2111 4.729918 CCCGCTGGCTCCAAGCTT 62.730 66.667 0.00 0.00 41.99 3.74
2064 2114 0.967380 ATTTTCCCGCTGGCTCCAAG 60.967 55.000 0.00 0.00 0.00 3.61
2067 2117 2.418083 CCATTTTCCCGCTGGCTCC 61.418 63.158 0.00 0.00 0.00 4.70
2074 2124 6.983890 ACATAATATGTTTTCCATTTTCCCGC 59.016 34.615 0.00 0.00 41.63 6.13
2099 2149 4.525024 TCTCTTGGTCCGTTTGGTTAAAA 58.475 39.130 0.00 0.00 36.30 1.52
2103 2153 2.572290 CTTCTCTTGGTCCGTTTGGTT 58.428 47.619 0.00 0.00 36.30 3.67
2136 2186 2.094675 CGAATGCCCCTGTTCTTTCAT 58.905 47.619 0.00 0.00 0.00 2.57
2137 2187 1.073125 TCGAATGCCCCTGTTCTTTCA 59.927 47.619 0.00 0.00 0.00 2.69
2144 2194 1.272425 TGGATTTTCGAATGCCCCTGT 60.272 47.619 0.00 0.00 0.00 4.00
2145 2195 1.473258 TGGATTTTCGAATGCCCCTG 58.527 50.000 0.00 0.00 0.00 4.45
2146 2196 2.459555 ATGGATTTTCGAATGCCCCT 57.540 45.000 0.00 0.00 0.00 4.79
2147 2197 2.029918 GCTATGGATTTTCGAATGCCCC 60.030 50.000 0.00 0.00 0.00 5.80
2148 2198 2.887152 AGCTATGGATTTTCGAATGCCC 59.113 45.455 0.00 0.84 0.00 5.36
2149 2199 3.565482 TCAGCTATGGATTTTCGAATGCC 59.435 43.478 0.00 1.40 0.00 4.40
2150 2200 4.818534 TCAGCTATGGATTTTCGAATGC 57.181 40.909 0.00 0.00 0.00 3.56
2151 2201 6.017687 TGTGATCAGCTATGGATTTTCGAATG 60.018 38.462 0.00 0.00 0.00 2.67
2152 2202 6.057533 TGTGATCAGCTATGGATTTTCGAAT 58.942 36.000 0.00 0.00 0.00 3.34
2153 2203 5.427378 TGTGATCAGCTATGGATTTTCGAA 58.573 37.500 0.00 0.00 0.00 3.71
2154 2204 5.022282 TGTGATCAGCTATGGATTTTCGA 57.978 39.130 0.00 0.00 0.00 3.71
2155 2205 5.739752 TTGTGATCAGCTATGGATTTTCG 57.260 39.130 0.00 0.00 0.00 3.46
2156 2206 5.298777 AGCTTGTGATCAGCTATGGATTTTC 59.701 40.000 6.17 0.00 37.11 2.29
2157 2207 5.198965 AGCTTGTGATCAGCTATGGATTTT 58.801 37.500 6.17 0.00 37.11 1.82
2158 2208 4.789807 AGCTTGTGATCAGCTATGGATTT 58.210 39.130 6.17 0.00 37.11 2.17
2159 2209 4.141551 TGAGCTTGTGATCAGCTATGGATT 60.142 41.667 7.84 0.00 39.21 3.01
2160 2210 3.390311 TGAGCTTGTGATCAGCTATGGAT 59.610 43.478 7.84 0.00 39.21 3.41
2161 2211 2.767960 TGAGCTTGTGATCAGCTATGGA 59.232 45.455 7.84 0.00 39.21 3.41
2162 2212 3.189618 TGAGCTTGTGATCAGCTATGG 57.810 47.619 7.84 0.00 39.21 2.74
2163 2213 4.994220 GATGAGCTTGTGATCAGCTATG 57.006 45.455 7.84 0.00 42.19 2.23
2167 2217 1.331138 GCAGATGAGCTTGTGATCAGC 59.669 52.381 0.00 0.00 44.27 4.26
2168 2218 2.867368 GAGCAGATGAGCTTGTGATCAG 59.133 50.000 0.00 0.00 46.75 2.90
2169 2219 2.419713 GGAGCAGATGAGCTTGTGATCA 60.420 50.000 3.59 0.00 46.75 2.92
2170 2220 2.211806 GGAGCAGATGAGCTTGTGATC 58.788 52.381 0.00 0.00 46.75 2.92
2171 2221 1.134159 GGGAGCAGATGAGCTTGTGAT 60.134 52.381 0.00 0.00 46.75 3.06
2172 2222 0.251354 GGGAGCAGATGAGCTTGTGA 59.749 55.000 0.00 0.00 46.75 3.58
2173 2223 1.088340 CGGGAGCAGATGAGCTTGTG 61.088 60.000 0.00 0.00 46.75 3.33
2174 2224 1.220206 CGGGAGCAGATGAGCTTGT 59.780 57.895 0.00 0.00 46.75 3.16
2175 2225 1.523258 CCGGGAGCAGATGAGCTTG 60.523 63.158 0.00 0.00 46.75 4.01
2176 2226 1.053264 ATCCGGGAGCAGATGAGCTT 61.053 55.000 0.00 0.00 46.75 3.74
2178 2228 1.301558 CATCCGGGAGCAGATGAGC 60.302 63.158 0.00 0.00 42.04 4.26
2179 2229 0.755079 TTCATCCGGGAGCAGATGAG 59.245 55.000 0.00 0.00 47.00 2.90
2180 2230 1.427809 ATTCATCCGGGAGCAGATGA 58.572 50.000 0.00 0.00 45.43 2.92
2181 2231 2.301296 ACTATTCATCCGGGAGCAGATG 59.699 50.000 0.00 0.00 41.05 2.90
2182 2232 2.614259 ACTATTCATCCGGGAGCAGAT 58.386 47.619 0.00 0.00 0.00 2.90
2183 2233 2.088104 ACTATTCATCCGGGAGCAGA 57.912 50.000 0.00 0.00 0.00 4.26
2184 2234 4.336889 TTTACTATTCATCCGGGAGCAG 57.663 45.455 0.00 0.00 0.00 4.24
2185 2235 4.974645 ATTTACTATTCATCCGGGAGCA 57.025 40.909 0.00 0.00 0.00 4.26
2186 2236 5.305585 TGAATTTACTATTCATCCGGGAGC 58.694 41.667 0.00 0.00 33.55 4.70
2187 2237 7.801716 TTTGAATTTACTATTCATCCGGGAG 57.198 36.000 0.00 0.00 37.79 4.30
2188 2238 8.050325 TCTTTTGAATTTACTATTCATCCGGGA 58.950 33.333 0.00 0.00 37.79 5.14
2189 2239 8.220755 TCTTTTGAATTTACTATTCATCCGGG 57.779 34.615 0.00 0.00 37.79 5.73
2219 2269 9.985730 TCATATTGTTTTGAATTTCTCTTTGCT 57.014 25.926 0.00 0.00 0.00 3.91
2233 2283 9.965748 ACGTTTCAAAAACTTCATATTGTTTTG 57.034 25.926 10.06 0.00 43.04 2.44
2235 2285 8.528295 CGACGTTTCAAAAACTTCATATTGTTT 58.472 29.630 8.98 0.00 37.92 2.83
2236 2286 7.698970 ACGACGTTTCAAAAACTTCATATTGTT 59.301 29.630 0.00 0.00 0.00 2.83
2237 2287 7.190871 ACGACGTTTCAAAAACTTCATATTGT 58.809 30.769 0.00 0.00 0.00 2.71
2238 2288 7.149192 GGACGACGTTTCAAAAACTTCATATTG 60.149 37.037 0.13 0.00 0.00 1.90
2239 2289 6.854381 GGACGACGTTTCAAAAACTTCATATT 59.146 34.615 0.13 0.00 0.00 1.28
2240 2290 6.204108 AGGACGACGTTTCAAAAACTTCATAT 59.796 34.615 0.13 0.00 0.00 1.78
2241 2291 5.524646 AGGACGACGTTTCAAAAACTTCATA 59.475 36.000 0.13 0.00 0.00 2.15
2242 2292 4.334481 AGGACGACGTTTCAAAAACTTCAT 59.666 37.500 0.13 0.00 0.00 2.57
2243 2293 3.685756 AGGACGACGTTTCAAAAACTTCA 59.314 39.130 0.13 0.00 0.00 3.02
2244 2294 4.268767 AGGACGACGTTTCAAAAACTTC 57.731 40.909 0.13 0.96 0.00 3.01
2245 2295 3.064408 GGAGGACGACGTTTCAAAAACTT 59.936 43.478 0.13 0.00 0.00 2.66
2246 2296 2.610833 GGAGGACGACGTTTCAAAAACT 59.389 45.455 0.13 0.00 0.00 2.66
2247 2297 2.352342 TGGAGGACGACGTTTCAAAAAC 59.648 45.455 0.13 0.00 0.00 2.43
2248 2298 2.630158 TGGAGGACGACGTTTCAAAAA 58.370 42.857 0.13 0.00 0.00 1.94
2249 2299 2.312722 TGGAGGACGACGTTTCAAAA 57.687 45.000 0.13 0.00 0.00 2.44
2250 2300 2.206750 CTTGGAGGACGACGTTTCAAA 58.793 47.619 0.13 2.66 0.00 2.69
2251 2301 1.539496 CCTTGGAGGACGACGTTTCAA 60.539 52.381 0.13 0.00 37.67 2.69
2252 2302 0.032952 CCTTGGAGGACGACGTTTCA 59.967 55.000 0.13 0.00 37.67 2.69
2253 2303 0.669625 CCCTTGGAGGACGACGTTTC 60.670 60.000 0.13 3.35 37.67 2.78
2254 2304 1.117142 TCCCTTGGAGGACGACGTTT 61.117 55.000 0.13 0.00 37.67 3.60
2255 2305 1.117142 TTCCCTTGGAGGACGACGTT 61.117 55.000 0.13 0.00 37.67 3.99
2256 2306 0.903454 ATTCCCTTGGAGGACGACGT 60.903 55.000 0.00 0.00 37.67 4.34
2257 2307 0.249398 AATTCCCTTGGAGGACGACG 59.751 55.000 0.00 0.00 37.67 5.12
2258 2308 1.003233 ACAATTCCCTTGGAGGACGAC 59.997 52.381 0.00 0.00 37.67 4.34
2259 2309 1.358152 ACAATTCCCTTGGAGGACGA 58.642 50.000 0.00 0.00 37.67 4.20
2260 2310 2.084546 GAACAATTCCCTTGGAGGACG 58.915 52.381 0.00 0.00 37.67 4.79
2261 2311 3.441500 AGAACAATTCCCTTGGAGGAC 57.558 47.619 0.00 0.00 37.67 3.85
2262 2312 4.141041 TCAAAGAACAATTCCCTTGGAGGA 60.141 41.667 0.00 0.00 37.67 3.71
2263 2313 4.151883 TCAAAGAACAATTCCCTTGGAGG 58.848 43.478 0.00 0.00 39.30 4.30
2264 2314 5.789643 TTCAAAGAACAATTCCCTTGGAG 57.210 39.130 0.00 0.00 39.30 3.86
2265 2315 6.552445 TTTTCAAAGAACAATTCCCTTGGA 57.448 33.333 0.00 0.00 39.30 3.53
2266 2316 6.991531 TCATTTTCAAAGAACAATTCCCTTGG 59.008 34.615 0.00 0.00 39.30 3.61
2267 2317 8.337532 GTTCATTTTCAAAGAACAATTCCCTTG 58.662 33.333 0.00 0.00 40.89 3.61
2268 2318 8.267183 AGTTCATTTTCAAAGAACAATTCCCTT 58.733 29.630 0.00 0.00 43.00 3.95
2269 2319 7.712205 CAGTTCATTTTCAAAGAACAATTCCCT 59.288 33.333 0.00 0.00 43.00 4.20
2270 2320 7.495606 ACAGTTCATTTTCAAAGAACAATTCCC 59.504 33.333 0.00 0.00 43.00 3.97
2271 2321 8.424274 ACAGTTCATTTTCAAAGAACAATTCC 57.576 30.769 0.00 0.00 43.00 3.01
2273 2323 9.868277 TGTACAGTTCATTTTCAAAGAACAATT 57.132 25.926 0.00 0.00 43.00 2.32
2274 2324 9.868277 TTGTACAGTTCATTTTCAAAGAACAAT 57.132 25.926 0.00 0.00 43.00 2.71
2295 2345 5.831997 ACATTTCTGGCTTGTTTCTTGTAC 58.168 37.500 0.00 0.00 0.00 2.90
2296 2346 7.575414 TTACATTTCTGGCTTGTTTCTTGTA 57.425 32.000 0.00 0.00 0.00 2.41
2297 2347 6.463995 TTACATTTCTGGCTTGTTTCTTGT 57.536 33.333 0.00 0.00 0.00 3.16
2298 2348 7.042523 CCTTTTACATTTCTGGCTTGTTTCTTG 60.043 37.037 0.00 0.00 0.00 3.02
2299 2349 6.986231 CCTTTTACATTTCTGGCTTGTTTCTT 59.014 34.615 0.00 0.00 0.00 2.52
2309 2359 8.248253 GGTAATACCAACCTTTTACATTTCTGG 58.752 37.037 4.24 0.00 38.42 3.86
2344 2395 7.985184 AGTCTTATTTAGATGTTATGCGACCAA 59.015 33.333 0.00 0.00 34.79 3.67
2374 2425 6.985059 GCATACTACTTCCTCCGTTTCTAAAT 59.015 38.462 0.00 0.00 0.00 1.40
2376 2427 5.419788 TGCATACTACTTCCTCCGTTTCTAA 59.580 40.000 0.00 0.00 0.00 2.10
2377 2428 4.951715 TGCATACTACTTCCTCCGTTTCTA 59.048 41.667 0.00 0.00 0.00 2.10
2378 2429 3.767673 TGCATACTACTTCCTCCGTTTCT 59.232 43.478 0.00 0.00 0.00 2.52
2379 2430 4.113354 CTGCATACTACTTCCTCCGTTTC 58.887 47.826 0.00 0.00 0.00 2.78
2383 2434 1.341531 CCCTGCATACTACTTCCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
2384 2435 1.070914 GCCCTGCATACTACTTCCTCC 59.929 57.143 0.00 0.00 0.00 4.30
2385 2436 1.762957 TGCCCTGCATACTACTTCCTC 59.237 52.381 0.00 0.00 31.71 3.71
2388 2439 2.691409 TGTGCCCTGCATACTACTTC 57.309 50.000 0.00 0.00 41.91 3.01
2389 2440 2.923121 CATGTGCCCTGCATACTACTT 58.077 47.619 0.00 0.00 41.91 2.24
2395 2446 1.130777 TAGAGCATGTGCCCTGCATA 58.869 50.000 0.57 0.00 41.91 3.14
2396 2447 0.477204 ATAGAGCATGTGCCCTGCAT 59.523 50.000 0.57 0.00 41.91 3.96
2397 2448 0.464916 CATAGAGCATGTGCCCTGCA 60.465 55.000 0.57 0.00 42.15 4.41
2398 2449 0.179037 TCATAGAGCATGTGCCCTGC 60.179 55.000 0.57 0.00 43.38 4.85
2399 2450 1.140452 AGTCATAGAGCATGTGCCCTG 59.860 52.381 0.57 0.00 43.38 4.45
2400 2451 1.504912 AGTCATAGAGCATGTGCCCT 58.495 50.000 0.57 0.00 43.38 5.19
2401 2452 2.338577 AAGTCATAGAGCATGTGCCC 57.661 50.000 0.57 0.00 43.38 5.36
2402 2453 5.636965 CAGTATAAGTCATAGAGCATGTGCC 59.363 44.000 0.57 0.00 43.38 5.01
2403 2454 5.119898 GCAGTATAAGTCATAGAGCATGTGC 59.880 44.000 0.00 0.00 42.49 4.57
2404 2455 6.365518 CAGCAGTATAAGTCATAGAGCATGTG 59.634 42.308 0.00 0.00 35.96 3.21
2405 2456 6.453943 CAGCAGTATAAGTCATAGAGCATGT 58.546 40.000 0.00 0.00 35.96 3.21
2406 2457 5.348179 GCAGCAGTATAAGTCATAGAGCATG 59.652 44.000 0.00 0.00 35.81 4.06
2407 2458 5.245751 AGCAGCAGTATAAGTCATAGAGCAT 59.754 40.000 0.00 0.00 0.00 3.79
2408 2459 4.586421 AGCAGCAGTATAAGTCATAGAGCA 59.414 41.667 0.00 0.00 0.00 4.26
2409 2460 4.922692 CAGCAGCAGTATAAGTCATAGAGC 59.077 45.833 0.00 0.00 0.00 4.09
2410 2461 6.324561 TCAGCAGCAGTATAAGTCATAGAG 57.675 41.667 0.00 0.00 0.00 2.43
2411 2462 6.907853 ATCAGCAGCAGTATAAGTCATAGA 57.092 37.500 0.00 0.00 0.00 1.98
2412 2463 7.272299 CGTTATCAGCAGCAGTATAAGTCATAG 59.728 40.741 0.00 0.00 0.00 2.23
2413 2464 7.084486 CGTTATCAGCAGCAGTATAAGTCATA 58.916 38.462 0.00 0.00 0.00 2.15
2414 2465 5.923114 CGTTATCAGCAGCAGTATAAGTCAT 59.077 40.000 0.00 0.00 0.00 3.06
2415 2466 5.281727 CGTTATCAGCAGCAGTATAAGTCA 58.718 41.667 0.00 0.00 0.00 3.41
2416 2467 4.681942 CCGTTATCAGCAGCAGTATAAGTC 59.318 45.833 0.00 0.00 0.00 3.01
2417 2468 4.099573 ACCGTTATCAGCAGCAGTATAAGT 59.900 41.667 0.00 0.00 0.00 2.24
2418 2469 4.621991 ACCGTTATCAGCAGCAGTATAAG 58.378 43.478 0.00 0.00 0.00 1.73
2419 2470 4.098807 TGACCGTTATCAGCAGCAGTATAA 59.901 41.667 0.00 0.00 0.00 0.98
2420 2471 3.634910 TGACCGTTATCAGCAGCAGTATA 59.365 43.478 0.00 0.00 0.00 1.47
2421 2472 2.430694 TGACCGTTATCAGCAGCAGTAT 59.569 45.455 0.00 0.00 0.00 2.12
2422 2473 1.822371 TGACCGTTATCAGCAGCAGTA 59.178 47.619 0.00 0.00 0.00 2.74
2423 2474 0.608130 TGACCGTTATCAGCAGCAGT 59.392 50.000 0.00 0.00 0.00 4.40
2424 2475 1.725641 TTGACCGTTATCAGCAGCAG 58.274 50.000 0.00 0.00 0.00 4.24
2425 2476 1.804151 GTTTGACCGTTATCAGCAGCA 59.196 47.619 0.00 0.00 0.00 4.41
2426 2477 1.804151 TGTTTGACCGTTATCAGCAGC 59.196 47.619 0.00 0.00 0.00 5.25
2427 2478 2.805671 TGTGTTTGACCGTTATCAGCAG 59.194 45.455 0.00 0.00 0.00 4.24
2428 2479 2.805671 CTGTGTTTGACCGTTATCAGCA 59.194 45.455 0.00 0.00 0.00 4.41
2429 2480 2.159627 CCTGTGTTTGACCGTTATCAGC 59.840 50.000 0.00 0.00 0.00 4.26
2430 2481 3.399330 ACCTGTGTTTGACCGTTATCAG 58.601 45.455 0.00 0.00 0.00 2.90
2431 2482 3.478857 ACCTGTGTTTGACCGTTATCA 57.521 42.857 0.00 0.00 0.00 2.15
2432 2483 5.232463 TCTTACCTGTGTTTGACCGTTATC 58.768 41.667 0.00 0.00 0.00 1.75
2433 2484 5.011329 TCTCTTACCTGTGTTTGACCGTTAT 59.989 40.000 0.00 0.00 0.00 1.89
2434 2485 4.341806 TCTCTTACCTGTGTTTGACCGTTA 59.658 41.667 0.00 0.00 0.00 3.18
2435 2486 3.133362 TCTCTTACCTGTGTTTGACCGTT 59.867 43.478 0.00 0.00 0.00 4.44
2436 2487 2.696707 TCTCTTACCTGTGTTTGACCGT 59.303 45.455 0.00 0.00 0.00 4.83
2437 2488 3.380479 TCTCTTACCTGTGTTTGACCG 57.620 47.619 0.00 0.00 0.00 4.79
2438 2489 5.347907 CGTATTCTCTTACCTGTGTTTGACC 59.652 44.000 0.00 0.00 0.00 4.02
2439 2490 5.347907 CCGTATTCTCTTACCTGTGTTTGAC 59.652 44.000 0.00 0.00 0.00 3.18
2440 2491 5.244402 TCCGTATTCTCTTACCTGTGTTTGA 59.756 40.000 0.00 0.00 0.00 2.69
2441 2492 5.475719 TCCGTATTCTCTTACCTGTGTTTG 58.524 41.667 0.00 0.00 0.00 2.93
2442 2493 5.733620 TCCGTATTCTCTTACCTGTGTTT 57.266 39.130 0.00 0.00 0.00 2.83
2443 2494 5.337330 CCTTCCGTATTCTCTTACCTGTGTT 60.337 44.000 0.00 0.00 0.00 3.32
2444 2495 4.159879 CCTTCCGTATTCTCTTACCTGTGT 59.840 45.833 0.00 0.00 0.00 3.72
2445 2496 4.401519 TCCTTCCGTATTCTCTTACCTGTG 59.598 45.833 0.00 0.00 0.00 3.66
2446 2497 4.607239 TCCTTCCGTATTCTCTTACCTGT 58.393 43.478 0.00 0.00 0.00 4.00
2447 2498 5.533482 CATCCTTCCGTATTCTCTTACCTG 58.467 45.833 0.00 0.00 0.00 4.00
2448 2499 4.039366 GCATCCTTCCGTATTCTCTTACCT 59.961 45.833 0.00 0.00 0.00 3.08
2449 2500 4.039366 AGCATCCTTCCGTATTCTCTTACC 59.961 45.833 0.00 0.00 0.00 2.85
2450 2501 4.985409 CAGCATCCTTCCGTATTCTCTTAC 59.015 45.833 0.00 0.00 0.00 2.34
2451 2502 4.039245 CCAGCATCCTTCCGTATTCTCTTA 59.961 45.833 0.00 0.00 0.00 2.10
2452 2503 3.181461 CCAGCATCCTTCCGTATTCTCTT 60.181 47.826 0.00 0.00 0.00 2.85
2453 2504 2.366916 CCAGCATCCTTCCGTATTCTCT 59.633 50.000 0.00 0.00 0.00 3.10
2454 2505 2.365617 TCCAGCATCCTTCCGTATTCTC 59.634 50.000 0.00 0.00 0.00 2.87
2455 2506 2.398588 TCCAGCATCCTTCCGTATTCT 58.601 47.619 0.00 0.00 0.00 2.40
2456 2507 2.910688 TCCAGCATCCTTCCGTATTC 57.089 50.000 0.00 0.00 0.00 1.75
2457 2508 3.261897 CCTATCCAGCATCCTTCCGTATT 59.738 47.826 0.00 0.00 0.00 1.89
2458 2509 2.834549 CCTATCCAGCATCCTTCCGTAT 59.165 50.000 0.00 0.00 0.00 3.06
2459 2510 2.158370 TCCTATCCAGCATCCTTCCGTA 60.158 50.000 0.00 0.00 0.00 4.02
2460 2511 1.051812 CCTATCCAGCATCCTTCCGT 58.948 55.000 0.00 0.00 0.00 4.69
2461 2512 1.342074 TCCTATCCAGCATCCTTCCG 58.658 55.000 0.00 0.00 0.00 4.30
2462 2513 3.118445 GCTATCCTATCCAGCATCCTTCC 60.118 52.174 0.00 0.00 35.35 3.46
2463 2514 3.118445 GGCTATCCTATCCAGCATCCTTC 60.118 52.174 0.00 0.00 37.02 3.46
2464 2515 2.843113 GGCTATCCTATCCAGCATCCTT 59.157 50.000 0.00 0.00 37.02 3.36
2465 2516 2.476199 GGCTATCCTATCCAGCATCCT 58.524 52.381 0.00 0.00 37.02 3.24
2466 2517 1.488393 GGGCTATCCTATCCAGCATCC 59.512 57.143 0.00 0.00 37.02 3.51
2467 2518 2.191400 TGGGCTATCCTATCCAGCATC 58.809 52.381 0.00 0.00 37.02 3.91
2468 2519 2.349167 TGGGCTATCCTATCCAGCAT 57.651 50.000 0.00 0.00 37.02 3.79
2469 2520 2.306805 CAATGGGCTATCCTATCCAGCA 59.693 50.000 0.00 0.00 37.02 4.41
2470 2521 2.943199 GCAATGGGCTATCCTATCCAGC 60.943 54.545 0.00 0.00 40.25 4.85
2471 2522 2.996631 GCAATGGGCTATCCTATCCAG 58.003 52.381 0.00 0.00 40.25 3.86
2483 2534 3.874392 ACAGAACAATTAGCAATGGGC 57.126 42.857 0.00 0.00 45.30 5.36
2496 2547 9.952030 TTCCAACAAATGACTATATACAGAACA 57.048 29.630 0.00 0.00 0.00 3.18
2499 2550 8.768397 AGGTTCCAACAAATGACTATATACAGA 58.232 33.333 0.00 0.00 0.00 3.41
2501 2552 9.747898 AAAGGTTCCAACAAATGACTATATACA 57.252 29.630 0.00 0.00 0.00 2.29
2506 2557 8.934023 TTCTAAAGGTTCCAACAAATGACTAT 57.066 30.769 0.00 0.00 0.00 2.12
2508 2559 7.559897 TCTTTCTAAAGGTTCCAACAAATGACT 59.440 33.333 2.77 0.00 36.67 3.41
2509 2560 7.648112 GTCTTTCTAAAGGTTCCAACAAATGAC 59.352 37.037 2.77 0.00 36.67 3.06
2511 2562 7.716612 AGTCTTTCTAAAGGTTCCAACAAATG 58.283 34.615 2.77 0.00 36.67 2.32
2512 2563 7.898014 AGTCTTTCTAAAGGTTCCAACAAAT 57.102 32.000 2.77 0.00 36.67 2.32
2513 2564 7.712204 AAGTCTTTCTAAAGGTTCCAACAAA 57.288 32.000 2.77 0.00 36.67 2.83
2519 2570 9.043079 CCGAATATAAGTCTTTCTAAAGGTTCC 57.957 37.037 2.77 0.00 36.67 3.62
2520 2571 9.043079 CCCGAATATAAGTCTTTCTAAAGGTTC 57.957 37.037 2.77 0.00 36.67 3.62
2521 2572 8.765517 TCCCGAATATAAGTCTTTCTAAAGGTT 58.234 33.333 2.77 0.74 36.67 3.50
2525 2576 9.595823 CTGTTCCCGAATATAAGTCTTTCTAAA 57.404 33.333 0.00 0.00 0.00 1.85
2529 2580 7.224949 CCTTCTGTTCCCGAATATAAGTCTTTC 59.775 40.741 0.00 0.00 0.00 2.62
2530 2581 7.048512 CCTTCTGTTCCCGAATATAAGTCTTT 58.951 38.462 0.00 0.00 0.00 2.52
2532 2583 5.897824 TCCTTCTGTTCCCGAATATAAGTCT 59.102 40.000 0.00 0.00 0.00 3.24
2533 2584 6.158023 TCCTTCTGTTCCCGAATATAAGTC 57.842 41.667 0.00 0.00 0.00 3.01
2535 2586 6.163135 ACTCCTTCTGTTCCCGAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
2536 2587 6.239232 GCTACTCCTTCTGTTCCCGAATATAA 60.239 42.308 0.00 0.00 0.00 0.98
2537 2588 5.243283 GCTACTCCTTCTGTTCCCGAATATA 59.757 44.000 0.00 0.00 0.00 0.86
2538 2589 4.039366 GCTACTCCTTCTGTTCCCGAATAT 59.961 45.833 0.00 0.00 0.00 1.28
2539 2590 3.383825 GCTACTCCTTCTGTTCCCGAATA 59.616 47.826 0.00 0.00 0.00 1.75
2542 2593 1.183549 GCTACTCCTTCTGTTCCCGA 58.816 55.000 0.00 0.00 0.00 5.14
2543 2594 0.895530 TGCTACTCCTTCTGTTCCCG 59.104 55.000 0.00 0.00 0.00 5.14
2545 2596 2.701107 GGTTGCTACTCCTTCTGTTCC 58.299 52.381 0.00 0.00 0.00 3.62
2546 2597 2.338500 CGGTTGCTACTCCTTCTGTTC 58.662 52.381 0.00 0.00 0.00 3.18
2547 2598 1.002087 CCGGTTGCTACTCCTTCTGTT 59.998 52.381 0.00 0.00 0.00 3.16
2549 2600 0.108138 CCCGGTTGCTACTCCTTCTG 60.108 60.000 0.00 0.00 0.00 3.02
2550 2601 1.265454 CCCCGGTTGCTACTCCTTCT 61.265 60.000 0.00 0.00 0.00 2.85
2551 2602 1.221021 CCCCGGTTGCTACTCCTTC 59.779 63.158 0.00 0.00 0.00 3.46
2552 2603 1.538135 ACCCCGGTTGCTACTCCTT 60.538 57.895 0.00 0.00 0.00 3.36
2554 2605 2.240162 CTGACCCCGGTTGCTACTCC 62.240 65.000 0.00 0.00 0.00 3.85
2555 2606 1.218316 CTGACCCCGGTTGCTACTC 59.782 63.158 0.00 0.00 0.00 2.59
2556 2607 0.834687 TTCTGACCCCGGTTGCTACT 60.835 55.000 0.00 0.00 0.00 2.57
2557 2608 0.672711 GTTCTGACCCCGGTTGCTAC 60.673 60.000 0.00 0.00 0.00 3.58
2558 2609 1.122632 TGTTCTGACCCCGGTTGCTA 61.123 55.000 0.00 0.00 0.00 3.49
2559 2610 2.430367 GTTCTGACCCCGGTTGCT 59.570 61.111 0.00 0.00 0.00 3.91
2560 2611 2.112297 TGTTCTGACCCCGGTTGC 59.888 61.111 0.00 0.00 0.00 4.17
2562 2613 1.423794 ATGGTGTTCTGACCCCGGTT 61.424 55.000 0.00 0.00 34.79 4.44
2563 2614 1.423794 AATGGTGTTCTGACCCCGGT 61.424 55.000 0.00 0.00 34.79 5.28
2565 2616 0.250727 ACAATGGTGTTCTGACCCCG 60.251 55.000 0.00 0.00 32.58 5.73
2591 2653 1.218316 CTCCGCTACTGGTTCCCAC 59.782 63.158 0.00 0.00 0.00 4.61
2621 2683 4.213270 TGCTCACTTTGTCGTATTTTCCTG 59.787 41.667 0.00 0.00 0.00 3.86
2625 2687 6.503524 ACATTTGCTCACTTTGTCGTATTTT 58.496 32.000 0.00 0.00 0.00 1.82
2651 2713 6.558009 TGTATTAGTTTACAGAGGCAGTACG 58.442 40.000 0.00 0.00 0.00 3.67
2676 2738 9.162764 TGCTTGATTTAGTGATCTAAAAGGTAC 57.837 33.333 4.86 0.00 45.40 3.34
2677 2739 9.383519 CTGCTTGATTTAGTGATCTAAAAGGTA 57.616 33.333 4.86 0.00 45.40 3.08
2708 2772 1.604755 TGCCACGTGATTTGTTGTACC 59.395 47.619 19.30 0.00 0.00 3.34
2717 2782 2.443260 TACGCCTGTGCCACGTGATT 62.443 55.000 19.30 0.00 40.78 2.57
2722 2787 2.434185 ATGTACGCCTGTGCCACG 60.434 61.111 0.00 0.00 0.00 4.94
2733 2798 8.867112 ACTTACTGTGTTAATATCCATGTACG 57.133 34.615 0.00 0.00 0.00 3.67
2753 2818 9.931210 GGTATTGCACATACAGATTTAACTTAC 57.069 33.333 15.97 0.00 0.00 2.34
2764 2829 7.087409 TCATTTTGAGGTATTGCACATACAG 57.913 36.000 15.97 0.00 0.00 2.74
2772 2837 6.973229 AATTTGCTCATTTTGAGGTATTGC 57.027 33.333 6.64 0.00 44.43 3.56
2773 2838 9.421806 TGTTAATTTGCTCATTTTGAGGTATTG 57.578 29.630 6.64 0.00 44.43 1.90
2779 2844 8.301730 ACACATGTTAATTTGCTCATTTTGAG 57.698 30.769 0.00 0.08 46.90 3.02
2780 2845 7.924947 TGACACATGTTAATTTGCTCATTTTGA 59.075 29.630 0.00 0.00 0.00 2.69
2781 2846 8.074474 TGACACATGTTAATTTGCTCATTTTG 57.926 30.769 0.00 0.00 0.00 2.44
2782 2847 8.659925 TTGACACATGTTAATTTGCTCATTTT 57.340 26.923 0.00 0.00 0.00 1.82
2783 2848 7.927629 ACTTGACACATGTTAATTTGCTCATTT 59.072 29.630 0.00 0.00 0.00 2.32
2784 2849 7.436118 ACTTGACACATGTTAATTTGCTCATT 58.564 30.769 0.00 0.00 0.00 2.57
2785 2850 6.985117 ACTTGACACATGTTAATTTGCTCAT 58.015 32.000 0.00 0.00 0.00 2.90
2786 2851 6.389830 ACTTGACACATGTTAATTTGCTCA 57.610 33.333 0.00 0.00 0.00 4.26
2787 2852 7.860373 TGTTACTTGACACATGTTAATTTGCTC 59.140 33.333 0.00 0.00 0.00 4.26
2788 2853 7.711846 TGTTACTTGACACATGTTAATTTGCT 58.288 30.769 0.00 0.00 0.00 3.91
2789 2854 7.647715 ACTGTTACTTGACACATGTTAATTTGC 59.352 33.333 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.