Multiple sequence alignment - TraesCS6A01G252600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G252600 chr6A 100.000 5566 0 0 1 5566 467042072 467047637 0.000000e+00 10279.0
1 TraesCS6A01G252600 chr6B 91.691 3045 170 33 1 3009 492188647 492191644 0.000000e+00 4145.0
2 TraesCS6A01G252600 chr6B 94.092 694 34 2 3198 3891 492191776 492192462 0.000000e+00 1048.0
3 TraesCS6A01G252600 chr6B 96.296 405 13 2 4197 4600 492192965 492193368 0.000000e+00 664.0
4 TraesCS6A01G252600 chr6B 85.477 661 49 30 4624 5264 492193445 492194078 0.000000e+00 645.0
5 TraesCS6A01G252600 chr6B 95.608 296 13 0 3890 4185 492192586 492192881 5.050000e-130 475.0
6 TraesCS6A01G252600 chr6B 86.538 260 25 5 5315 5566 492195876 492196133 1.530000e-70 278.0
7 TraesCS6A01G252600 chr6B 97.436 39 1 0 4601 4639 492193390 492193428 3.600000e-07 67.6
8 TraesCS6A01G252600 chr6D 90.741 3078 176 52 1 3009 328328152 328331189 0.000000e+00 4004.0
9 TraesCS6A01G252600 chr6D 95.726 1006 36 1 3198 4203 328331318 328332316 0.000000e+00 1613.0
10 TraesCS6A01G252600 chr6D 92.193 871 30 11 4197 5033 328332380 328333246 0.000000e+00 1197.0
11 TraesCS6A01G252600 chr6D 92.444 225 16 1 5342 5566 328336829 328337052 2.500000e-83 320.0
12 TraesCS6A01G252600 chr6D 87.108 287 15 6 5070 5346 328333328 328333602 7.010000e-79 305.0
13 TraesCS6A01G252600 chr4D 84.276 1768 171 54 1202 2951 494514059 494512381 0.000000e+00 1626.0
14 TraesCS6A01G252600 chr4D 82.935 1758 186 47 1202 2941 494476255 494474594 0.000000e+00 1480.0
15 TraesCS6A01G252600 chr4D 85.821 1340 147 22 3255 4573 494474271 494472954 0.000000e+00 1382.0
16 TraesCS6A01G252600 chr4D 84.336 715 87 14 3868 4573 494511459 494510761 0.000000e+00 676.0
17 TraesCS6A01G252600 chr4D 86.281 605 52 14 3286 3879 494512068 494511484 3.660000e-176 628.0
18 TraesCS6A01G252600 chr4D 80.658 517 63 14 3234 3728 494507699 494507198 3.170000e-97 366.0
19 TraesCS6A01G252600 chr4D 86.522 230 24 4 2721 2945 494508121 494507894 4.310000e-61 246.0
20 TraesCS6A01G252600 chr4D 97.500 40 1 0 986 1025 494476438 494476399 1.000000e-07 69.4
21 TraesCS6A01G252600 chr5A 84.361 1752 171 42 1202 2936 673836065 673837730 0.000000e+00 1622.0
22 TraesCS6A01G252600 chr5A 83.607 1769 193 41 1202 2948 673932652 673934345 0.000000e+00 1570.0
23 TraesCS6A01G252600 chr5A 85.437 1339 150 20 3255 4573 673934677 673935990 0.000000e+00 1351.0
24 TraesCS6A01G252600 chr5A 83.871 713 90 14 3870 4573 673838670 673839366 0.000000e+00 656.0
25 TraesCS6A01G252600 chr4B 84.291 1757 173 39 1202 2941 634079578 634077908 0.000000e+00 1620.0
26 TraesCS6A01G252600 chr4B 84.046 1755 196 44 1202 2941 633936590 633934905 0.000000e+00 1613.0
27 TraesCS6A01G252600 chr4B 84.992 1326 139 27 3267 4571 633934108 633932822 0.000000e+00 1291.0
28 TraesCS6A01G252600 chr4B 84.196 715 88 14 3868 4573 634077010 634076312 0.000000e+00 671.0
29 TraesCS6A01G252600 chr4B 85.417 240 28 6 3234 3469 634074094 634073858 5.570000e-60 243.0
30 TraesCS6A01G252600 chr4B 76.829 164 25 9 986 1139 633936773 633936613 4.620000e-11 80.5
31 TraesCS6A01G252600 chr1D 83.648 899 138 7 3253 4146 8921594 8920700 0.000000e+00 837.0
32 TraesCS6A01G252600 chr1D 80.687 611 112 4 3540 4150 8958602 8959206 2.350000e-128 470.0
33 TraesCS6A01G252600 chr1D 82.306 373 62 3 2581 2949 8925168 8924796 2.500000e-83 320.0
34 TraesCS6A01G252600 chr1D 82.274 299 51 2 2659 2957 8930629 8930925 1.990000e-64 257.0
35 TraesCS6A01G252600 chr1D 86.667 225 28 2 3248 3472 8958364 8958586 1.200000e-61 248.0
36 TraesCS6A01G252600 chr1B 81.728 903 155 9 3254 4150 12108949 12108051 0.000000e+00 745.0
37 TraesCS6A01G252600 chr1B 83.333 90 9 5 1711 1800 12150522 12150439 1.660000e-10 78.7
38 TraesCS6A01G252600 chr1A 81.333 900 140 14 3254 4146 10157084 10156206 0.000000e+00 706.0
39 TraesCS6A01G252600 chr1A 83.850 613 88 8 1912 2514 10159839 10159228 1.740000e-159 573.0
40 TraesCS6A01G252600 chr1A 87.838 296 36 0 4280 4575 10156040 10155745 1.150000e-91 348.0
41 TraesCS6A01G252600 chr1A 81.553 103 18 1 1698 1800 10159995 10159894 3.570000e-12 84.2
42 TraesCS6A01G252600 chr2A 78.349 642 113 18 1892 2514 662746871 662746237 5.230000e-105 392.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G252600 chr6A 467042072 467047637 5565 False 10279.000000 10279 100.000000 1 5566 1 chr6A.!!$F1 5565
1 TraesCS6A01G252600 chr6B 492188647 492196133 7486 False 1046.085714 4145 92.448286 1 5566 7 chr6B.!!$F1 5565
2 TraesCS6A01G252600 chr6D 328328152 328337052 8900 False 1487.800000 4004 91.642400 1 5566 5 chr6D.!!$F1 5565
3 TraesCS6A01G252600 chr4D 494472954 494476438 3484 True 977.133333 1480 88.752000 986 4573 3 chr4D.!!$R1 3587
4 TraesCS6A01G252600 chr4D 494507198 494514059 6861 True 708.400000 1626 84.414600 1202 4573 5 chr4D.!!$R2 3371
5 TraesCS6A01G252600 chr5A 673932652 673935990 3338 False 1460.500000 1570 84.522000 1202 4573 2 chr5A.!!$F2 3371
6 TraesCS6A01G252600 chr5A 673836065 673839366 3301 False 1139.000000 1622 84.116000 1202 4573 2 chr5A.!!$F1 3371
7 TraesCS6A01G252600 chr4B 633932822 633936773 3951 True 994.833333 1613 81.955667 986 4571 3 chr4B.!!$R1 3585
8 TraesCS6A01G252600 chr4B 634073858 634079578 5720 True 844.666667 1620 84.634667 1202 4573 3 chr4B.!!$R2 3371
9 TraesCS6A01G252600 chr1D 8920700 8925168 4468 True 578.500000 837 82.977000 2581 4146 2 chr1D.!!$R1 1565
10 TraesCS6A01G252600 chr1D 8958364 8959206 842 False 359.000000 470 83.677000 3248 4150 2 chr1D.!!$F2 902
11 TraesCS6A01G252600 chr1B 12108051 12108949 898 True 745.000000 745 81.728000 3254 4150 1 chr1B.!!$R1 896
12 TraesCS6A01G252600 chr1A 10155745 10159995 4250 True 427.800000 706 83.643500 1698 4575 4 chr1A.!!$R1 2877
13 TraesCS6A01G252600 chr2A 662746237 662746871 634 True 392.000000 392 78.349000 1892 2514 1 chr2A.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 318 0.321830 TTTTTCCACGGGGTCGATCC 60.322 55.000 6.02 6.02 40.11 3.36 F
688 738 0.322456 CGTCCAAATCCCAGCCAAGA 60.322 55.000 0.00 0.00 0.00 3.02 F
1632 1745 1.133761 TCCTCGTCCTCTTCATCCGAT 60.134 52.381 0.00 0.00 0.00 4.18 F
2436 2606 0.458543 CGTCCTTCCATGTCTCCACG 60.459 60.000 0.00 0.00 0.00 4.94 F
2850 3041 0.754957 CAGGAGAGGGCGATGAGTCT 60.755 60.000 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1703 0.250338 ACTGGCGGTTCTTGAAGGAC 60.250 55.000 0.00 0.00 0.00 3.85 R
1674 1796 1.479323 GAGGTGGAGGTGTTGCGTATA 59.521 52.381 0.00 0.00 0.00 1.47 R
3191 7208 1.894881 AATTTTGCAACATGGCACCC 58.105 45.000 0.00 0.00 44.86 4.61 R
4150 8379 1.291132 GAGATAACAGAAGCACCGGC 58.709 55.000 0.00 0.00 41.61 6.13 R
4771 9204 0.107017 TATTCAGAGCTGGGCCAAGC 60.107 55.000 25.93 25.93 43.88 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.162154 GGATGGGTCCCCTCGTCC 61.162 72.222 5.13 4.26 38.69 4.79
72 73 3.062466 TCGAGCCGACCTCCTGTG 61.062 66.667 0.00 0.00 37.27 3.66
115 121 3.257624 TCCATCGTCTCCATGATCATCAG 59.742 47.826 4.86 5.06 0.00 2.90
293 318 0.321830 TTTTTCCACGGGGTCGATCC 60.322 55.000 6.02 6.02 40.11 3.36
329 354 2.105128 CAGGCACGACCCGAGATC 59.895 66.667 0.00 0.00 40.58 2.75
448 498 2.159338 TCACGCCTTACTTTACGCCTAG 60.159 50.000 0.00 0.00 0.00 3.02
464 514 2.035576 GCCTAGAATACCGTACTGTGGG 59.964 54.545 0.00 0.00 0.00 4.61
473 523 0.535335 CGTACTGTGGGCTGTGGTAT 59.465 55.000 0.00 0.00 0.00 2.73
474 524 1.739035 CGTACTGTGGGCTGTGGTATG 60.739 57.143 0.00 0.00 0.00 2.39
494 544 6.881065 GGTATGGTATACAGGAGTACACGATA 59.119 42.308 5.01 0.00 30.32 2.92
498 548 7.879070 TGGTATACAGGAGTACACGATATTTC 58.121 38.462 5.01 0.00 28.23 2.17
518 568 2.484651 TCTCTTCTCGTCTCTTTCACCG 59.515 50.000 0.00 0.00 0.00 4.94
550 600 4.100707 TCGACAGGTTAATTCACTACCG 57.899 45.455 0.00 0.00 37.04 4.02
567 617 2.145905 CGAAAAATGCTGACGCGCC 61.146 57.895 5.73 0.00 39.65 6.53
589 639 3.499737 CTTCCGCGCCGCAAATCT 61.500 61.111 10.75 0.00 0.00 2.40
600 650 1.702299 GCAAATCTCGGACGTGACG 59.298 57.895 2.24 2.24 0.00 4.35
630 680 3.508840 CCCGCGCACCCAAATCTC 61.509 66.667 8.75 0.00 0.00 2.75
631 681 2.745884 CCGCGCACCCAAATCTCA 60.746 61.111 8.75 0.00 0.00 3.27
633 683 2.034879 CGCGCACCCAAATCTCAGT 61.035 57.895 8.75 0.00 0.00 3.41
639 689 2.819608 GCACCCAAATCTCAGTTTAGCA 59.180 45.455 0.00 0.00 0.00 3.49
644 694 3.128242 CCAAATCTCAGTTTAGCAGCAGG 59.872 47.826 0.00 0.00 0.00 4.85
650 700 3.347216 TCAGTTTAGCAGCAGGAAATCC 58.653 45.455 0.00 0.00 0.00 3.01
652 702 1.094785 TTTAGCAGCAGGAAATCCGC 58.905 50.000 0.00 7.81 42.08 5.54
663 713 4.672409 CAGGAAATCCGCTTGTTTAATCC 58.328 43.478 0.00 0.00 42.08 3.01
670 720 1.400494 CGCTTGTTTAATCCCTTCCCG 59.600 52.381 0.00 0.00 0.00 5.14
671 721 2.443416 GCTTGTTTAATCCCTTCCCGT 58.557 47.619 0.00 0.00 0.00 5.28
672 722 2.422479 GCTTGTTTAATCCCTTCCCGTC 59.578 50.000 0.00 0.00 0.00 4.79
674 724 1.986631 TGTTTAATCCCTTCCCGTCCA 59.013 47.619 0.00 0.00 0.00 4.02
677 727 4.021229 GTTTAATCCCTTCCCGTCCAAAT 58.979 43.478 0.00 0.00 0.00 2.32
678 728 2.437085 AATCCCTTCCCGTCCAAATC 57.563 50.000 0.00 0.00 0.00 2.17
681 731 1.688811 CCTTCCCGTCCAAATCCCA 59.311 57.895 0.00 0.00 0.00 4.37
682 732 0.394352 CCTTCCCGTCCAAATCCCAG 60.394 60.000 0.00 0.00 0.00 4.45
683 733 1.001393 TTCCCGTCCAAATCCCAGC 60.001 57.895 0.00 0.00 0.00 4.85
684 734 2.440247 CCCGTCCAAATCCCAGCC 60.440 66.667 0.00 0.00 0.00 4.85
685 735 2.354729 CCGTCCAAATCCCAGCCA 59.645 61.111 0.00 0.00 0.00 4.75
686 736 1.304052 CCGTCCAAATCCCAGCCAA 60.304 57.895 0.00 0.00 0.00 4.52
687 737 1.315257 CCGTCCAAATCCCAGCCAAG 61.315 60.000 0.00 0.00 0.00 3.61
688 738 0.322456 CGTCCAAATCCCAGCCAAGA 60.322 55.000 0.00 0.00 0.00 3.02
689 739 1.467920 GTCCAAATCCCAGCCAAGAG 58.532 55.000 0.00 0.00 0.00 2.85
740 790 3.857854 GTGCGCTGGCTCATGACG 61.858 66.667 9.73 0.00 40.82 4.35
765 815 4.110493 GCCGCTGCCTACAAGTAG 57.890 61.111 0.21 0.21 0.00 2.57
768 818 4.110493 GCTGCCTACAAGTAGCGG 57.890 61.111 1.69 4.45 31.95 5.52
771 821 2.311688 CTGCCTACAAGTAGCGGGGG 62.312 65.000 1.69 0.00 31.95 5.40
773 823 2.106332 CTACAAGTAGCGGGGGCG 59.894 66.667 0.00 0.00 0.00 6.13
774 824 3.441011 CTACAAGTAGCGGGGGCGG 62.441 68.421 0.00 0.00 0.00 6.13
813 863 2.744768 GCAGAGAGCGGCGAAAAGG 61.745 63.158 12.98 0.00 0.00 3.11
897 975 1.687494 CCTAGACTTGCAACGCTCGC 61.687 60.000 0.00 0.00 0.00 5.03
899 977 2.154798 TAGACTTGCAACGCTCGCCT 62.155 55.000 0.00 0.00 0.00 5.52
900 978 3.016474 GACTTGCAACGCTCGCCTC 62.016 63.158 0.00 0.00 0.00 4.70
901 979 4.139420 CTTGCAACGCTCGCCTCG 62.139 66.667 0.00 0.00 0.00 4.63
902 980 4.656117 TTGCAACGCTCGCCTCGA 62.656 61.111 0.00 0.00 0.00 4.04
1403 1507 2.345991 CCCTTCGTTCTCGCCCAA 59.654 61.111 0.00 0.00 36.96 4.12
1404 1508 1.741770 CCCTTCGTTCTCGCCCAAG 60.742 63.158 0.00 0.00 36.96 3.61
1405 1509 2.391389 CCTTCGTTCTCGCCCAAGC 61.391 63.158 0.00 0.00 36.96 4.01
1632 1745 1.133761 TCCTCGTCCTCTTCATCCGAT 60.134 52.381 0.00 0.00 0.00 4.18
1692 1814 1.648504 GTATACGCAACACCTCCACC 58.351 55.000 0.00 0.00 0.00 4.61
1800 1922 4.838486 GCCGTCGACGAGGAGCAG 62.838 72.222 37.65 20.24 43.02 4.24
1801 1923 4.838486 CCGTCGACGAGGAGCAGC 62.838 72.222 37.65 0.00 43.02 5.25
1809 1937 2.817396 GAGGAGCAGCGCAAGTCC 60.817 66.667 11.47 12.20 41.68 3.85
1842 1970 2.359975 CCCAAGTCCGGCCAGTTC 60.360 66.667 2.24 0.00 0.00 3.01
1884 2012 1.627297 AATCCGGCCAGTCTCCTTCC 61.627 60.000 2.24 0.00 0.00 3.46
2436 2606 0.458543 CGTCCTTCCATGTCTCCACG 60.459 60.000 0.00 0.00 0.00 4.94
2700 2888 3.743396 AGAAGAAACAGCGTGAGATTGAC 59.257 43.478 0.00 0.00 0.00 3.18
2841 3032 2.045536 CAGGCAACAGGAGAGGGC 60.046 66.667 0.00 0.00 41.41 5.19
2850 3041 0.754957 CAGGAGAGGGCGATGAGTCT 60.755 60.000 0.00 0.00 0.00 3.24
2941 3132 4.677182 ACCTGGATCCAAGTAAGCATTTT 58.323 39.130 14.63 0.00 0.00 1.82
2968 3159 7.201145 TGTTGTTATCTTAGATAAGCGTCCTC 58.799 38.462 14.25 2.94 33.40 3.71
3158 7159 4.450976 TGCTGTGTTCACTGTTAATCACT 58.549 39.130 10.50 0.00 0.00 3.41
3159 7160 4.273235 TGCTGTGTTCACTGTTAATCACTG 59.727 41.667 10.50 0.00 0.00 3.66
3170 7187 5.702670 ACTGTTAATCACTGAAGTGGACATG 59.297 40.000 10.45 0.00 45.65 3.21
3171 7188 5.620206 TGTTAATCACTGAAGTGGACATGT 58.380 37.500 10.45 0.00 45.65 3.21
3173 7190 6.017192 TGTTAATCACTGAAGTGGACATGTTG 60.017 38.462 10.45 0.00 45.65 3.33
3174 7191 2.221169 TCACTGAAGTGGACATGTTGC 58.779 47.619 10.45 0.00 45.65 4.17
3176 7193 2.031420 CACTGAAGTGGACATGTTGCAG 60.031 50.000 0.00 0.10 42.10 4.41
3179 7196 2.618241 TGAAGTGGACATGTTGCAGAAC 59.382 45.455 0.00 0.00 0.00 3.01
3180 7197 2.645838 AGTGGACATGTTGCAGAACT 57.354 45.000 0.00 0.00 32.79 3.01
3183 7200 3.701040 AGTGGACATGTTGCAGAACTTTT 59.299 39.130 0.00 0.00 32.79 2.27
3184 7201 4.160252 AGTGGACATGTTGCAGAACTTTTT 59.840 37.500 0.00 0.00 32.79 1.94
3311 7342 6.932356 TTACTGATTCAGATTCTTGATGGC 57.068 37.500 20.33 0.00 35.18 4.40
3331 7365 6.712179 TGGCAAATGTATGAATAATGCAGA 57.288 33.333 0.00 0.00 34.08 4.26
3503 7568 8.893219 TCTAAGTTGCATAGAGTTATCATTGG 57.107 34.615 0.00 0.00 0.00 3.16
3558 7626 6.012858 TGGTCATATGGTTTCTTCTGTAGGTT 60.013 38.462 2.13 0.00 0.00 3.50
3645 7713 2.415090 GCTCAACCAGATGTGCAATGTC 60.415 50.000 0.00 0.00 39.10 3.06
3685 7753 4.019860 TGTCTGCTCTCTGGCTTCTTATTT 60.020 41.667 0.00 0.00 0.00 1.40
3905 8134 9.659830 GTTTGTTTAATAGGATAATACCTTGCG 57.340 33.333 0.00 0.00 41.00 4.85
3970 8199 5.759763 TGTGGAGGAAATGAATATCATGACG 59.240 40.000 0.00 0.00 37.15 4.35
4072 8301 3.541242 AGGAGTCCTGATATGGGAGAG 57.459 52.381 12.07 0.00 33.04 3.20
4150 8379 2.601763 GGAAAGAATACTACGGTGCGTG 59.398 50.000 0.00 0.00 41.39 5.34
4555 8903 1.592669 GGATGCCGACGACATGGAG 60.593 63.158 0.00 0.00 0.00 3.86
4675 9108 8.953990 GTGTGTTGTGTAGTATAAAAAGCTTTG 58.046 33.333 13.54 0.00 0.00 2.77
4685 9118 2.314323 AAAAGCTTTGGTGCACTTGG 57.686 45.000 17.98 6.08 34.99 3.61
4697 9130 2.093890 TGCACTTGGTGATAGGCAATG 58.906 47.619 1.57 0.00 35.23 2.82
4820 9253 2.507324 GGAACGAGACGGCAGCTC 60.507 66.667 0.00 0.00 0.00 4.09
4954 9412 3.027974 ACGGAGTAAGAAGAGCACAAC 57.972 47.619 0.00 0.00 41.94 3.32
4955 9413 2.288886 ACGGAGTAAGAAGAGCACAACC 60.289 50.000 0.00 0.00 41.94 3.77
4956 9414 2.338500 GGAGTAAGAAGAGCACAACCG 58.662 52.381 0.00 0.00 0.00 4.44
4957 9415 1.727335 GAGTAAGAAGAGCACAACCGC 59.273 52.381 0.00 0.00 0.00 5.68
4958 9416 0.438830 GTAAGAAGAGCACAACCGCG 59.561 55.000 0.00 0.00 36.85 6.46
4959 9417 1.289109 TAAGAAGAGCACAACCGCGC 61.289 55.000 0.00 0.00 36.85 6.86
5024 9482 0.322456 AAGCATCTTACGCAAGGGCA 60.322 50.000 13.14 0.00 46.39 5.36
5076 9569 4.776322 CGAAGCACCGCCCATGGA 62.776 66.667 15.22 0.00 0.00 3.41
5153 9668 3.578282 GGAGAAATGTGGATGTGGGTTTT 59.422 43.478 0.00 0.00 0.00 2.43
5157 9672 4.605640 AATGTGGATGTGGGTTTTCAAG 57.394 40.909 0.00 0.00 0.00 3.02
5185 9701 1.811778 TGAGAGCATTGAGGGCCTAT 58.188 50.000 5.73 0.00 0.00 2.57
5186 9702 2.130193 TGAGAGCATTGAGGGCCTATT 58.870 47.619 5.73 0.00 0.00 1.73
5187 9703 2.158711 TGAGAGCATTGAGGGCCTATTG 60.159 50.000 5.73 5.69 0.00 1.90
5232 9757 0.469144 GTAGGGCCTCTCTGCTAGCT 60.469 60.000 10.74 0.00 0.00 3.32
5233 9758 0.468958 TAGGGCCTCTCTGCTAGCTG 60.469 60.000 10.74 16.05 0.00 4.24
5234 9759 1.760086 GGGCCTCTCTGCTAGCTGA 60.760 63.158 21.40 21.40 0.00 4.26
5235 9760 1.741525 GGCCTCTCTGCTAGCTGAG 59.258 63.158 34.05 34.05 41.45 3.35
5249 9774 3.648507 AGCTGAGCTCAATGAAATCCT 57.351 42.857 18.85 1.50 30.62 3.24
5250 9775 3.543665 AGCTGAGCTCAATGAAATCCTC 58.456 45.455 18.85 0.00 30.62 3.71
5251 9776 3.054582 AGCTGAGCTCAATGAAATCCTCA 60.055 43.478 18.85 0.00 33.65 3.86
5252 9777 3.065095 GCTGAGCTCAATGAAATCCTCAC 59.935 47.826 18.85 0.00 36.69 3.51
5253 9778 3.264947 TGAGCTCAATGAAATCCTCACG 58.735 45.455 15.67 0.00 36.69 4.35
5254 9779 3.055891 TGAGCTCAATGAAATCCTCACGA 60.056 43.478 15.67 0.00 36.69 4.35
5255 9780 3.935203 GAGCTCAATGAAATCCTCACGAA 59.065 43.478 9.40 0.00 36.69 3.85
5256 9781 3.686726 AGCTCAATGAAATCCTCACGAAC 59.313 43.478 0.00 0.00 36.69 3.95
5257 9782 3.484229 GCTCAATGAAATCCTCACGAACG 60.484 47.826 0.00 0.00 36.69 3.95
5258 9783 3.920446 TCAATGAAATCCTCACGAACGA 58.080 40.909 0.14 0.00 36.69 3.85
5259 9784 4.311606 TCAATGAAATCCTCACGAACGAA 58.688 39.130 0.14 0.00 36.69 3.85
5260 9785 4.388773 TCAATGAAATCCTCACGAACGAAG 59.611 41.667 0.14 0.00 36.69 3.79
5261 9786 3.653539 TGAAATCCTCACGAACGAAGA 57.346 42.857 0.14 0.00 0.00 2.87
5262 9787 3.575630 TGAAATCCTCACGAACGAAGAG 58.424 45.455 0.14 7.65 0.00 2.85
5272 9797 3.061139 CACGAACGAAGAGTGAACTCAAC 60.061 47.826 12.76 5.30 45.21 3.18
5321 9877 3.942829 TGGCTCCAACAATCTAGTGAAG 58.057 45.455 0.00 0.00 0.00 3.02
5339 9895 0.251787 AGGCTGGTTGCTTAAAGGGG 60.252 55.000 0.00 0.00 42.39 4.79
5457 17087 4.103311 ACCTTCTGAATTATGCTACCTCCC 59.897 45.833 0.00 0.00 0.00 4.30
5460 17090 5.489792 TCTGAATTATGCTACCTCCCATC 57.510 43.478 0.00 0.00 0.00 3.51
5518 17148 4.479156 TTCCACCCTTTCCCTAAAACAT 57.521 40.909 0.00 0.00 0.00 2.71
5541 17171 3.057526 GGGGACAGCATGACAAACTTAAC 60.058 47.826 0.00 0.00 39.69 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.459089 GGCACAGGAGGTCGGCTC 62.459 72.222 0.00 0.00 0.00 4.70
72 73 2.424705 TAACACAGTGGACGGACGGC 62.425 60.000 5.31 0.00 0.00 5.68
115 121 2.295253 ATCTCGTGATTTGGACGGAC 57.705 50.000 0.00 0.00 37.43 4.79
154 173 3.199891 GGCACGCCACCGGTAATC 61.200 66.667 6.87 0.00 39.22 1.75
190 209 2.410469 GTCACCGGTCGTATCCCG 59.590 66.667 2.59 0.00 45.07 5.14
210 229 4.344865 TGACCCCTGCTTTCGGCC 62.345 66.667 0.00 0.00 40.92 6.13
257 280 3.788333 AAAAGATTGGCACCATCGATG 57.212 42.857 18.76 18.76 0.00 3.84
293 318 0.385390 GCCGGCCATGTTTAAGGATG 59.615 55.000 18.11 0.00 0.00 3.51
374 399 1.645034 CAGTAGACGCCCAATGTGAG 58.355 55.000 0.00 0.00 0.00 3.51
443 493 2.035576 CCCACAGTACGGTATTCTAGGC 59.964 54.545 0.00 0.00 0.00 3.93
448 498 1.206371 ACAGCCCACAGTACGGTATTC 59.794 52.381 0.00 0.00 0.00 1.75
464 514 3.641906 ACTCCTGTATACCATACCACAGC 59.358 47.826 0.00 0.00 37.63 4.40
473 523 7.722728 AGAAATATCGTGTACTCCTGTATACCA 59.277 37.037 0.00 0.00 37.45 3.25
474 524 8.108551 AGAAATATCGTGTACTCCTGTATACC 57.891 38.462 0.00 0.00 37.45 2.73
494 544 5.474825 GGTGAAAGAGACGAGAAGAGAAAT 58.525 41.667 0.00 0.00 0.00 2.17
498 548 2.226912 ACGGTGAAAGAGACGAGAAGAG 59.773 50.000 0.00 0.00 0.00 2.85
527 577 3.864003 GGTAGTGAATTAACCTGTCGAGC 59.136 47.826 0.00 0.00 0.00 5.03
535 585 6.526674 CAGCATTTTTCGGTAGTGAATTAACC 59.473 38.462 0.00 0.00 0.00 2.85
550 600 1.801512 GGGCGCGTCAGCATTTTTC 60.802 57.895 14.93 0.00 45.49 2.29
589 639 3.417224 CTCGACCGTCACGTCCGA 61.417 66.667 10.14 10.14 0.00 4.55
615 665 1.577328 AACTGAGATTTGGGTGCGCG 61.577 55.000 0.00 0.00 0.00 6.86
630 680 2.096496 CGGATTTCCTGCTGCTAAACTG 59.904 50.000 0.00 0.00 0.00 3.16
631 681 2.359900 CGGATTTCCTGCTGCTAAACT 58.640 47.619 0.00 0.00 0.00 2.66
633 683 1.094785 GCGGATTTCCTGCTGCTAAA 58.905 50.000 0.00 0.00 34.38 1.85
639 689 1.620822 AAACAAGCGGATTTCCTGCT 58.379 45.000 9.24 9.24 43.81 4.24
644 694 4.983671 AGGGATTAAACAAGCGGATTTC 57.016 40.909 0.00 0.00 0.00 2.17
650 700 1.400494 CGGGAAGGGATTAAACAAGCG 59.600 52.381 0.00 0.00 0.00 4.68
652 702 3.014623 GGACGGGAAGGGATTAAACAAG 58.985 50.000 0.00 0.00 0.00 3.16
663 713 0.394352 CTGGGATTTGGACGGGAAGG 60.394 60.000 0.00 0.00 0.00 3.46
670 720 1.467920 CTCTTGGCTGGGATTTGGAC 58.532 55.000 0.00 0.00 0.00 4.02
671 721 0.323725 GCTCTTGGCTGGGATTTGGA 60.324 55.000 0.00 0.00 38.06 3.53
672 722 1.660560 CGCTCTTGGCTGGGATTTGG 61.661 60.000 0.00 0.00 39.13 3.28
674 724 2.048603 GCGCTCTTGGCTGGGATTT 61.049 57.895 0.00 0.00 39.13 2.17
684 734 3.838795 GTACGTGGCGCGCTCTTG 61.839 66.667 32.29 19.98 46.11 3.02
792 842 2.731691 TTTTCGCCGCTCTCTGCCTT 62.732 55.000 0.00 0.00 38.78 4.35
793 843 3.240134 TTTTCGCCGCTCTCTGCCT 62.240 57.895 0.00 0.00 38.78 4.75
794 844 2.742372 TTTTCGCCGCTCTCTGCC 60.742 61.111 0.00 0.00 38.78 4.85
795 845 2.744768 CCTTTTCGCCGCTCTCTGC 61.745 63.158 0.00 0.00 38.57 4.26
796 846 0.951040 AACCTTTTCGCCGCTCTCTG 60.951 55.000 0.00 0.00 0.00 3.35
797 847 0.670854 GAACCTTTTCGCCGCTCTCT 60.671 55.000 0.00 0.00 0.00 3.10
798 848 1.788481 GAACCTTTTCGCCGCTCTC 59.212 57.895 0.00 0.00 0.00 3.20
813 863 0.317020 GCTGACAACACTTGGCGAAC 60.317 55.000 0.00 0.00 43.38 3.95
897 975 0.596083 AATCAATCGCTCGCTCGAGG 60.596 55.000 15.58 4.50 42.14 4.63
899 977 1.588404 GAAAATCAATCGCTCGCTCGA 59.412 47.619 1.62 1.62 43.09 4.04
900 978 1.652045 CGAAAATCAATCGCTCGCTCG 60.652 52.381 0.00 0.00 33.07 5.03
901 979 1.997151 CGAAAATCAATCGCTCGCTC 58.003 50.000 0.00 0.00 33.07 5.03
922 1000 0.104672 TCCCACCTCTCACCCTTTCA 60.105 55.000 0.00 0.00 0.00 2.69
924 1002 0.842467 CCTCCCACCTCTCACCCTTT 60.842 60.000 0.00 0.00 0.00 3.11
925 1003 1.229658 CCTCCCACCTCTCACCCTT 60.230 63.158 0.00 0.00 0.00 3.95
926 1004 2.452114 CCTCCCACCTCTCACCCT 59.548 66.667 0.00 0.00 0.00 4.34
927 1005 2.689034 CCCTCCCACCTCTCACCC 60.689 72.222 0.00 0.00 0.00 4.61
1245 1343 3.636231 TCGTCCCAGCCCTTGGTG 61.636 66.667 0.00 0.00 46.25 4.17
1246 1350 3.637273 GTCGTCCCAGCCCTTGGT 61.637 66.667 0.00 0.00 46.25 3.67
1379 1483 1.019673 CGAGAACGAAGGGGACGATA 58.980 55.000 0.00 0.00 42.66 2.92
1587 1700 1.566018 GGCGGTTCTTGAAGGACACG 61.566 60.000 5.89 7.89 0.00 4.49
1590 1703 0.250338 ACTGGCGGTTCTTGAAGGAC 60.250 55.000 0.00 0.00 0.00 3.85
1674 1796 1.479323 GAGGTGGAGGTGTTGCGTATA 59.521 52.381 0.00 0.00 0.00 1.47
1761 1883 4.722700 GGCGCCATGGGTGACTGT 62.723 66.667 24.80 0.00 38.38 3.55
1800 1922 2.437359 ATGGCAGAGGACTTGCGC 60.437 61.111 0.00 0.00 0.00 6.09
1801 1923 2.758089 GCATGGCAGAGGACTTGCG 61.758 63.158 0.00 0.00 42.50 4.85
1802 1924 2.758089 CGCATGGCAGAGGACTTGC 61.758 63.158 0.00 0.00 46.77 4.01
1809 1937 2.202987 GGAGGTCGCATGGCAGAG 60.203 66.667 0.00 0.00 0.00 3.35
2436 2606 4.271291 GCCTCTTGAATCCGATCAAAGTAC 59.729 45.833 0.00 0.00 38.75 2.73
2700 2888 2.401583 TGTCAATGGTGATCCCTTCG 57.598 50.000 0.00 0.00 35.80 3.79
2916 3107 3.686016 TGCTTACTTGGATCCAGGTTTC 58.314 45.455 31.88 20.81 37.44 2.78
2941 3132 8.038944 AGGACGCTTATCTAAGATAACAACAAA 58.961 33.333 1.13 0.00 35.33 2.83
2944 3135 7.201145 TGAGGACGCTTATCTAAGATAACAAC 58.799 38.462 1.13 0.00 35.33 3.32
2945 3136 7.342769 TGAGGACGCTTATCTAAGATAACAA 57.657 36.000 1.13 0.00 35.33 2.83
2946 3137 6.954487 TGAGGACGCTTATCTAAGATAACA 57.046 37.500 1.13 0.00 35.33 2.41
2947 3138 7.822658 AGATGAGGACGCTTATCTAAGATAAC 58.177 38.462 1.13 0.00 35.33 1.89
2950 3141 6.909550 AAGATGAGGACGCTTATCTAAGAT 57.090 37.500 1.13 0.00 35.33 2.40
2960 3151 3.437049 GCAAAGTAAAAGATGAGGACGCT 59.563 43.478 0.00 0.00 0.00 5.07
2963 3154 4.691216 ACTCGCAAAGTAAAAGATGAGGAC 59.309 41.667 0.00 0.00 36.07 3.85
2968 3159 8.948853 TGATTTAACTCGCAAAGTAAAAGATG 57.051 30.769 0.00 0.00 37.17 2.90
3010 4557 7.559590 AATTTCTACATGGCAGATGAAGTAC 57.440 36.000 0.00 0.00 0.00 2.73
3012 4559 7.177216 TCAAAATTTCTACATGGCAGATGAAGT 59.823 33.333 0.00 0.00 0.00 3.01
3013 4560 7.541162 TCAAAATTTCTACATGGCAGATGAAG 58.459 34.615 0.00 0.00 0.00 3.02
3015 4562 6.405065 GCTCAAAATTTCTACATGGCAGATGA 60.405 38.462 0.00 0.00 0.00 2.92
3021 6443 5.314923 TGAGCTCAAAATTTCTACATGGC 57.685 39.130 15.67 0.00 0.00 4.40
3022 6444 7.092137 TCATGAGCTCAAAATTTCTACATGG 57.908 36.000 22.50 0.00 35.06 3.66
3101 6575 9.683069 CAAGTCTTAACAGTAAGCATGATTTTT 57.317 29.630 0.00 0.00 37.27 1.94
3102 6576 8.850156 ACAAGTCTTAACAGTAAGCATGATTTT 58.150 29.630 0.00 0.00 37.27 1.82
3103 6577 8.396272 ACAAGTCTTAACAGTAAGCATGATTT 57.604 30.769 0.00 0.00 37.27 2.17
3104 6578 7.986085 ACAAGTCTTAACAGTAAGCATGATT 57.014 32.000 0.17 0.17 37.27 2.57
3106 6580 7.598869 CACTACAAGTCTTAACAGTAAGCATGA 59.401 37.037 0.00 0.00 37.27 3.07
3107 6581 7.622256 GCACTACAAGTCTTAACAGTAAGCATG 60.622 40.741 0.00 0.00 37.27 4.06
3108 6582 6.369065 GCACTACAAGTCTTAACAGTAAGCAT 59.631 38.462 0.00 0.00 37.27 3.79
3109 6583 5.694910 GCACTACAAGTCTTAACAGTAAGCA 59.305 40.000 0.00 0.00 37.27 3.91
3110 6584 5.694910 TGCACTACAAGTCTTAACAGTAAGC 59.305 40.000 0.00 0.00 37.27 3.09
3111 6585 6.924060 AGTGCACTACAAGTCTTAACAGTAAG 59.076 38.462 20.16 0.00 38.50 2.34
3113 6587 6.213677 CAGTGCACTACAAGTCTTAACAGTA 58.786 40.000 21.20 0.00 0.00 2.74
3114 6588 5.050490 CAGTGCACTACAAGTCTTAACAGT 58.950 41.667 21.20 0.00 0.00 3.55
3115 6589 4.084328 GCAGTGCACTACAAGTCTTAACAG 60.084 45.833 21.20 2.68 0.00 3.16
3116 6590 3.807622 GCAGTGCACTACAAGTCTTAACA 59.192 43.478 21.20 0.00 0.00 2.41
3118 6592 4.058124 CAGCAGTGCACTACAAGTCTTAA 58.942 43.478 21.20 0.00 0.00 1.85
3119 6593 3.069586 ACAGCAGTGCACTACAAGTCTTA 59.930 43.478 21.20 0.00 0.00 2.10
3158 7159 2.618241 GTTCTGCAACATGTCCACTTCA 59.382 45.455 0.00 0.00 32.14 3.02
3159 7160 2.880890 AGTTCTGCAACATGTCCACTTC 59.119 45.455 0.00 0.00 34.60 3.01
3189 7206 2.985512 TTTTGCAACATGGCACCCGC 62.986 55.000 0.00 0.00 44.86 6.13
3191 7208 1.894881 AATTTTGCAACATGGCACCC 58.105 45.000 0.00 0.00 44.86 4.61
3192 7209 3.986442 AAAATTTTGCAACATGGCACC 57.014 38.095 1.75 0.00 44.86 5.01
3195 7212 6.297694 TCTTGTAAAATTTTGCAACATGGC 57.702 33.333 24.79 0.00 37.74 4.40
3196 7213 9.810231 GTATTCTTGTAAAATTTTGCAACATGG 57.190 29.630 24.79 17.16 37.74 3.66
3331 7365 6.596888 GCATCATGTCTGCCAAGTATATGTAT 59.403 38.462 10.65 0.00 33.44 2.29
3503 7568 2.417719 AGGCATCTTGACGTCAGAAAC 58.582 47.619 19.11 13.15 0.00 2.78
3558 7626 4.496341 GCTTTGCGCTCTCTAAATGCATTA 60.496 41.667 13.39 0.00 35.20 1.90
3645 7713 1.732259 GACACTATGAGGCCAACAACG 59.268 52.381 5.01 3.13 0.00 4.10
3685 7753 1.447140 GTGTCGTCGCTATGCCCAA 60.447 57.895 0.00 0.00 0.00 4.12
3905 8134 5.451342 GTGCTTAAAACGTCAGTCAAAGAAC 59.549 40.000 0.00 0.00 0.00 3.01
3970 8199 6.916932 GGTTATCATAACGTAGGAAGACTGTC 59.083 42.308 0.00 0.00 0.00 3.51
4072 8301 7.680588 GCAACATGAATAGAGAAGTCAATTCCC 60.681 40.741 0.00 0.00 38.84 3.97
4150 8379 1.291132 GAGATAACAGAAGCACCGGC 58.709 55.000 0.00 0.00 41.61 6.13
4202 8541 4.588899 TGGCACTACAAACTTCATATGCT 58.411 39.130 0.00 0.00 32.44 3.79
4269 8615 1.909700 ATGTAACTGGGCCACAAGTG 58.090 50.000 0.00 0.00 0.00 3.16
4584 8932 4.753233 AGTTGCTACTGCTGTATCTTCTG 58.247 43.478 0.00 0.00 40.48 3.02
4675 9108 0.322456 TGCCTATCACCAAGTGCACC 60.322 55.000 14.63 0.00 32.98 5.01
4685 9118 3.750130 CCACTATCTGCATTGCCTATCAC 59.250 47.826 6.12 0.00 0.00 3.06
4697 9130 4.142093 ACATTTCAAATGGCCACTATCTGC 60.142 41.667 8.16 0.00 0.00 4.26
4771 9204 0.107017 TATTCAGAGCTGGGCCAAGC 60.107 55.000 25.93 25.93 43.88 4.01
4772 9205 2.106166 AGATATTCAGAGCTGGGCCAAG 59.894 50.000 8.04 1.30 0.00 3.61
4773 9206 2.130193 AGATATTCAGAGCTGGGCCAA 58.870 47.619 8.04 0.00 0.00 4.52
4820 9253 4.135153 CGTGGAGGAGACGGCTGG 62.135 72.222 0.00 0.00 33.08 4.85
4931 9389 0.170561 TGCTCTTCTTACTCCGTCGC 59.829 55.000 0.00 0.00 0.00 5.19
4932 9390 1.199327 TGTGCTCTTCTTACTCCGTCG 59.801 52.381 0.00 0.00 0.00 5.12
4933 9391 2.987821 GTTGTGCTCTTCTTACTCCGTC 59.012 50.000 0.00 0.00 0.00 4.79
4934 9392 2.288886 GGTTGTGCTCTTCTTACTCCGT 60.289 50.000 0.00 0.00 0.00 4.69
4935 9393 2.338500 GGTTGTGCTCTTCTTACTCCG 58.662 52.381 0.00 0.00 0.00 4.63
4936 9394 2.338500 CGGTTGTGCTCTTCTTACTCC 58.662 52.381 0.00 0.00 0.00 3.85
4938 9396 1.797025 GCGGTTGTGCTCTTCTTACT 58.203 50.000 0.00 0.00 0.00 2.24
4939 9397 0.438830 CGCGGTTGTGCTCTTCTTAC 59.561 55.000 0.00 0.00 0.00 2.34
4940 9398 2.822306 CGCGGTTGTGCTCTTCTTA 58.178 52.632 0.00 0.00 0.00 2.10
4941 9399 3.642755 CGCGGTTGTGCTCTTCTT 58.357 55.556 0.00 0.00 0.00 2.52
4954 9412 3.414700 GACTTCACACCAGCGCGG 61.415 66.667 8.83 15.25 42.50 6.46
4955 9413 3.767230 CGACTTCACACCAGCGCG 61.767 66.667 0.00 0.00 0.00 6.86
4956 9414 4.077188 GCGACTTCACACCAGCGC 62.077 66.667 0.00 0.00 37.60 5.92
4957 9415 1.568612 AATGCGACTTCACACCAGCG 61.569 55.000 0.00 0.00 0.00 5.18
4958 9416 0.166814 GAATGCGACTTCACACCAGC 59.833 55.000 0.00 0.00 0.00 4.85
4959 9417 0.439985 CGAATGCGACTTCACACCAG 59.560 55.000 0.00 0.00 40.82 4.00
5034 9492 4.704833 CACCAGACTGGGGCACGG 62.705 72.222 25.34 0.00 43.37 4.94
5035 9493 4.704833 CCACCAGACTGGGGCACG 62.705 72.222 25.34 5.25 40.43 5.34
5036 9494 3.570212 ACCACCAGACTGGGGCAC 61.570 66.667 25.34 0.00 40.43 5.01
5037 9495 3.569210 CACCACCAGACTGGGGCA 61.569 66.667 25.34 0.00 40.43 5.36
5039 9497 4.351054 GGCACCACCAGACTGGGG 62.351 72.222 25.34 21.74 43.37 4.96
5181 9697 3.439476 GCTCAGCATCAATAGCCAATAGG 59.561 47.826 0.00 0.00 38.23 2.57
5185 9701 2.723322 AGCTCAGCATCAATAGCCAA 57.277 45.000 0.00 0.00 35.54 4.52
5186 9702 2.686405 CAAAGCTCAGCATCAATAGCCA 59.314 45.455 0.00 0.00 35.54 4.75
5187 9703 2.543238 GCAAAGCTCAGCATCAATAGCC 60.543 50.000 0.00 0.00 35.54 3.93
5189 9705 3.377485 ACAGCAAAGCTCAGCATCAATAG 59.623 43.478 12.23 0.00 36.40 1.73
5190 9706 3.349927 ACAGCAAAGCTCAGCATCAATA 58.650 40.909 12.23 0.00 36.40 1.90
5232 9757 3.055891 TCGTGAGGATTTCATTGAGCTCA 60.056 43.478 13.74 13.74 38.29 4.26
5233 9758 3.525537 TCGTGAGGATTTCATTGAGCTC 58.474 45.455 6.82 6.82 38.29 4.09
5234 9759 3.616956 TCGTGAGGATTTCATTGAGCT 57.383 42.857 0.00 0.00 38.29 4.09
5235 9760 3.484229 CGTTCGTGAGGATTTCATTGAGC 60.484 47.826 0.00 0.00 38.29 4.26
5236 9761 3.926527 TCGTTCGTGAGGATTTCATTGAG 59.073 43.478 0.00 0.00 38.29 3.02
5237 9762 3.920446 TCGTTCGTGAGGATTTCATTGA 58.080 40.909 0.00 0.00 38.29 2.57
5238 9763 4.388773 TCTTCGTTCGTGAGGATTTCATTG 59.611 41.667 0.00 0.00 38.29 2.82
5239 9764 4.566004 TCTTCGTTCGTGAGGATTTCATT 58.434 39.130 0.00 0.00 38.29 2.57
5240 9765 4.177026 CTCTTCGTTCGTGAGGATTTCAT 58.823 43.478 8.87 0.00 38.29 2.57
5241 9766 3.005472 ACTCTTCGTTCGTGAGGATTTCA 59.995 43.478 16.29 0.00 32.58 2.69
5242 9767 3.365220 CACTCTTCGTTCGTGAGGATTTC 59.635 47.826 16.29 0.00 32.58 2.17
5243 9768 3.005472 TCACTCTTCGTTCGTGAGGATTT 59.995 43.478 16.29 1.05 33.15 2.17
5244 9769 2.557056 TCACTCTTCGTTCGTGAGGATT 59.443 45.455 16.29 1.29 33.15 3.01
5245 9770 2.160205 TCACTCTTCGTTCGTGAGGAT 58.840 47.619 16.29 1.77 33.15 3.24
5246 9771 1.601166 TCACTCTTCGTTCGTGAGGA 58.399 50.000 16.29 10.77 33.15 3.71
5247 9772 2.052157 GTTCACTCTTCGTTCGTGAGG 58.948 52.381 16.29 9.42 38.71 3.86
5248 9773 2.974536 GAGTTCACTCTTCGTTCGTGAG 59.025 50.000 0.00 12.79 38.71 3.51
5249 9774 2.356695 TGAGTTCACTCTTCGTTCGTGA 59.643 45.455 8.41 0.00 43.25 4.35
5250 9775 2.727777 TGAGTTCACTCTTCGTTCGTG 58.272 47.619 8.41 0.00 43.25 4.35
5251 9776 3.114065 GTTGAGTTCACTCTTCGTTCGT 58.886 45.455 8.41 0.00 43.25 3.85
5252 9777 2.151360 CGTTGAGTTCACTCTTCGTTCG 59.849 50.000 8.41 1.57 43.25 3.95
5253 9778 3.369385 TCGTTGAGTTCACTCTTCGTTC 58.631 45.455 17.12 1.61 43.25 3.95
5254 9779 3.431922 TCGTTGAGTTCACTCTTCGTT 57.568 42.857 17.12 0.00 43.25 3.85
5255 9780 3.431922 TTCGTTGAGTTCACTCTTCGT 57.568 42.857 17.12 0.00 43.25 3.85
5256 9781 4.143305 GGATTTCGTTGAGTTCACTCTTCG 60.143 45.833 8.41 11.68 43.25 3.79
5257 9782 4.991687 AGGATTTCGTTGAGTTCACTCTTC 59.008 41.667 8.41 1.26 43.25 2.87
5258 9783 4.962155 AGGATTTCGTTGAGTTCACTCTT 58.038 39.130 8.41 0.00 43.25 2.85
5259 9784 4.039245 TGAGGATTTCGTTGAGTTCACTCT 59.961 41.667 8.41 0.00 43.25 3.24
5260 9785 4.150804 GTGAGGATTTCGTTGAGTTCACTC 59.849 45.833 0.00 0.00 43.15 3.51
5261 9786 4.058817 GTGAGGATTTCGTTGAGTTCACT 58.941 43.478 0.00 0.00 32.96 3.41
5262 9787 3.120991 CGTGAGGATTTCGTTGAGTTCAC 60.121 47.826 0.00 0.00 0.00 3.18
5272 9797 2.592194 TCTTCGTTCGTGAGGATTTCG 58.408 47.619 0.00 0.00 0.00 3.46
5339 9895 5.919707 AGCGATGCGATGATAATATCTGATC 59.080 40.000 1.66 0.00 0.00 2.92
5457 17087 2.440409 CCAAAGAGGTCCCTTGTGATG 58.560 52.381 0.00 0.00 0.00 3.07
5460 17090 0.895559 GCCCAAAGAGGTCCCTTGTG 60.896 60.000 0.00 0.00 34.66 3.33
5488 17118 3.305720 GGAAAGGGTGGAAAAGGTTTCT 58.694 45.455 1.11 0.00 0.00 2.52
5518 17148 0.478072 AGTTTGTCATGCTGTCCCCA 59.522 50.000 0.00 0.00 0.00 4.96
5526 17156 5.868257 TCATCATCGTTAAGTTTGTCATGC 58.132 37.500 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.