Multiple sequence alignment - TraesCS6A01G251700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G251700 chr6A 100.000 3454 0 0 1 3454 466092007 466095460 0.000000e+00 6379
1 TraesCS6A01G251700 chr4A 99.022 3272 30 1 183 3454 548526247 548522978 0.000000e+00 5864
2 TraesCS6A01G251700 chr4B 98.961 3272 33 1 183 3454 439195477 439198747 0.000000e+00 5853
3 TraesCS6A01G251700 chr5A 98.533 3272 23 3 183 3454 422075408 422072162 0.000000e+00 5753
4 TraesCS6A01G251700 chr6B 97.680 3276 70 4 182 3454 698114882 698118154 0.000000e+00 5624
5 TraesCS6A01G251700 chr6B 96.914 3273 86 3 183 3454 458495685 458498943 0.000000e+00 5470
6 TraesCS6A01G251700 chr6B 99.050 2526 23 1 929 3454 325035064 325037588 0.000000e+00 4530
7 TraesCS6A01G251700 chr6B 89.385 179 18 1 1 178 494088877 494088699 1.250000e-54 224
8 TraesCS6A01G251700 chr1A 99.218 2558 20 0 897 3454 80308210 80305653 0.000000e+00 4614
9 TraesCS6A01G251700 chr7A 99.287 2526 18 0 929 3454 176257263 176259788 0.000000e+00 4566
10 TraesCS6A01G251700 chr7A 97.881 755 15 1 170 924 176256550 176257303 0.000000e+00 1304
11 TraesCS6A01G251700 chr2A 99.208 2526 20 0 929 3454 642923998 642921473 0.000000e+00 4554
12 TraesCS6A01G251700 chr2A 97.443 743 17 2 183 924 642924699 642923958 0.000000e+00 1266
13 TraesCS6A01G251700 chr2B 99.050 2526 23 1 929 3454 669227501 669230025 0.000000e+00 4530
14 TraesCS6A01G251700 chr5B 98.016 756 13 2 171 924 161074832 161075587 0.000000e+00 1312
15 TraesCS6A01G251700 chr7D 90.633 758 44 22 176 924 264763317 264764056 0.000000e+00 981
16 TraesCS6A01G251700 chr2D 90.241 748 48 19 183 924 33017492 33018220 0.000000e+00 953
17 TraesCS6A01G251700 chr6D 91.620 179 14 1 1 178 327364069 327364247 2.660000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G251700 chr6A 466092007 466095460 3453 False 6379 6379 100.0000 1 3454 1 chr6A.!!$F1 3453
1 TraesCS6A01G251700 chr4A 548522978 548526247 3269 True 5864 5864 99.0220 183 3454 1 chr4A.!!$R1 3271
2 TraesCS6A01G251700 chr4B 439195477 439198747 3270 False 5853 5853 98.9610 183 3454 1 chr4B.!!$F1 3271
3 TraesCS6A01G251700 chr5A 422072162 422075408 3246 True 5753 5753 98.5330 183 3454 1 chr5A.!!$R1 3271
4 TraesCS6A01G251700 chr6B 698114882 698118154 3272 False 5624 5624 97.6800 182 3454 1 chr6B.!!$F3 3272
5 TraesCS6A01G251700 chr6B 458495685 458498943 3258 False 5470 5470 96.9140 183 3454 1 chr6B.!!$F2 3271
6 TraesCS6A01G251700 chr6B 325035064 325037588 2524 False 4530 4530 99.0500 929 3454 1 chr6B.!!$F1 2525
7 TraesCS6A01G251700 chr1A 80305653 80308210 2557 True 4614 4614 99.2180 897 3454 1 chr1A.!!$R1 2557
8 TraesCS6A01G251700 chr7A 176256550 176259788 3238 False 2935 4566 98.5840 170 3454 2 chr7A.!!$F1 3284
9 TraesCS6A01G251700 chr2A 642921473 642924699 3226 True 2910 4554 98.3255 183 3454 2 chr2A.!!$R1 3271
10 TraesCS6A01G251700 chr2B 669227501 669230025 2524 False 4530 4530 99.0500 929 3454 1 chr2B.!!$F1 2525
11 TraesCS6A01G251700 chr5B 161074832 161075587 755 False 1312 1312 98.0160 171 924 1 chr5B.!!$F1 753
12 TraesCS6A01G251700 chr7D 264763317 264764056 739 False 981 981 90.6330 176 924 1 chr7D.!!$F1 748
13 TraesCS6A01G251700 chr2D 33017492 33018220 728 False 953 953 90.2410 183 924 1 chr2D.!!$F1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.110464 GCGTGTTTGAAGCTCAGAGC 60.110 55.0 15.25 15.25 42.84 4.09 F
164 165 0.250901 TGTTTGAAGCTCAGAGCCCC 60.251 55.0 19.40 11.39 43.77 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 1983 3.983533 AGCCACCTCTACCTCTAGAAT 57.016 47.619 0.00 0.0 0.00 2.40 R
2527 2573 4.081476 CCTACAATGATGGATCATCGCCTA 60.081 45.833 2.59 0.0 46.22 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.625786 CATGATATGGACACTCAAAATATCCA 57.374 34.615 0.00 0.00 43.42 3.41
43 44 9.818270 ATGATATGGACACTCAAAATATCCATT 57.182 29.630 9.22 0.00 45.86 3.16
46 47 6.942532 TGGACACTCAAAATATCCATTAGC 57.057 37.500 0.00 0.00 34.50 3.09
47 48 6.422333 TGGACACTCAAAATATCCATTAGCA 58.578 36.000 0.00 0.00 34.50 3.49
48 49 6.543465 TGGACACTCAAAATATCCATTAGCAG 59.457 38.462 0.00 0.00 34.50 4.24
49 50 6.543831 GGACACTCAAAATATCCATTAGCAGT 59.456 38.462 0.00 0.00 0.00 4.40
50 51 7.715249 GGACACTCAAAATATCCATTAGCAGTA 59.285 37.037 0.00 0.00 0.00 2.74
51 52 8.668510 ACACTCAAAATATCCATTAGCAGTAG 57.331 34.615 0.00 0.00 0.00 2.57
52 53 8.486210 ACACTCAAAATATCCATTAGCAGTAGA 58.514 33.333 0.00 0.00 0.00 2.59
53 54 9.330063 CACTCAAAATATCCATTAGCAGTAGAA 57.670 33.333 0.00 0.00 0.00 2.10
56 57 8.786898 TCAAAATATCCATTAGCAGTAGAATGC 58.213 33.333 0.00 0.00 46.88 3.56
67 68 5.862924 GCAGTAGAATGCAAGTTCTAACA 57.137 39.130 10.61 0.00 45.77 2.41
68 69 6.428385 GCAGTAGAATGCAAGTTCTAACAT 57.572 37.500 10.61 0.00 45.77 2.71
69 70 7.539712 GCAGTAGAATGCAAGTTCTAACATA 57.460 36.000 10.61 0.00 45.77 2.29
70 71 8.147642 GCAGTAGAATGCAAGTTCTAACATAT 57.852 34.615 10.61 0.00 45.77 1.78
71 72 9.261180 GCAGTAGAATGCAAGTTCTAACATATA 57.739 33.333 10.61 0.00 45.77 0.86
78 79 7.930513 TGCAAGTTCTAACATATATGAGTCG 57.069 36.000 19.63 5.00 0.00 4.18
79 80 7.489160 TGCAAGTTCTAACATATATGAGTCGT 58.511 34.615 19.63 2.05 0.00 4.34
80 81 7.435192 TGCAAGTTCTAACATATATGAGTCGTG 59.565 37.037 19.63 12.50 0.00 4.35
81 82 7.648112 GCAAGTTCTAACATATATGAGTCGTGA 59.352 37.037 19.63 5.80 0.00 4.35
82 83 9.684448 CAAGTTCTAACATATATGAGTCGTGAT 57.316 33.333 19.63 0.00 0.00 3.06
102 103 6.855763 TGATTTATTTGAATCACTGCCCTT 57.144 33.333 0.00 0.00 40.20 3.95
103 104 6.866480 TGATTTATTTGAATCACTGCCCTTC 58.134 36.000 0.00 0.00 40.20 3.46
104 105 4.963276 TTATTTGAATCACTGCCCTTCG 57.037 40.909 0.00 0.00 0.00 3.79
105 106 2.559698 TTTGAATCACTGCCCTTCGA 57.440 45.000 0.00 0.00 0.00 3.71
106 107 2.787473 TTGAATCACTGCCCTTCGAT 57.213 45.000 0.00 0.00 0.00 3.59
107 108 2.028420 TGAATCACTGCCCTTCGATG 57.972 50.000 0.00 0.00 0.00 3.84
108 109 1.554617 TGAATCACTGCCCTTCGATGA 59.445 47.619 0.00 0.00 0.00 2.92
109 110 1.936547 GAATCACTGCCCTTCGATGAC 59.063 52.381 0.00 0.00 0.00 3.06
110 111 0.904649 ATCACTGCCCTTCGATGACA 59.095 50.000 0.00 0.00 0.00 3.58
111 112 0.247460 TCACTGCCCTTCGATGACAG 59.753 55.000 15.23 15.23 0.00 3.51
112 113 1.078848 ACTGCCCTTCGATGACAGC 60.079 57.895 16.18 9.75 31.46 4.40
113 114 1.817099 CTGCCCTTCGATGACAGCC 60.817 63.158 0.00 0.00 0.00 4.85
114 115 2.268920 GCCCTTCGATGACAGCCA 59.731 61.111 0.00 0.00 0.00 4.75
115 116 1.153086 GCCCTTCGATGACAGCCAT 60.153 57.895 0.00 0.00 38.43 4.40
116 117 0.749454 GCCCTTCGATGACAGCCATT 60.749 55.000 0.00 0.00 35.17 3.16
117 118 1.475034 GCCCTTCGATGACAGCCATTA 60.475 52.381 0.00 0.00 35.17 1.90
118 119 2.811873 GCCCTTCGATGACAGCCATTAT 60.812 50.000 0.00 0.00 35.17 1.28
119 120 3.557054 GCCCTTCGATGACAGCCATTATA 60.557 47.826 0.00 0.00 35.17 0.98
120 121 4.836825 CCCTTCGATGACAGCCATTATAT 58.163 43.478 0.00 0.00 35.17 0.86
121 122 4.633126 CCCTTCGATGACAGCCATTATATG 59.367 45.833 0.00 0.00 35.17 1.78
122 123 4.093998 CCTTCGATGACAGCCATTATATGC 59.906 45.833 0.00 0.00 35.17 3.14
123 124 4.270245 TCGATGACAGCCATTATATGCA 57.730 40.909 0.00 0.00 35.17 3.96
124 125 4.248058 TCGATGACAGCCATTATATGCAG 58.752 43.478 0.00 0.00 35.17 4.41
125 126 3.373130 CGATGACAGCCATTATATGCAGG 59.627 47.826 0.00 0.00 35.17 4.85
126 127 4.582869 GATGACAGCCATTATATGCAGGA 58.417 43.478 0.00 0.00 35.17 3.86
127 128 4.645863 TGACAGCCATTATATGCAGGAT 57.354 40.909 0.00 0.00 0.00 3.24
128 129 5.760484 TGACAGCCATTATATGCAGGATA 57.240 39.130 0.00 0.00 0.00 2.59
129 130 6.125589 TGACAGCCATTATATGCAGGATAA 57.874 37.500 6.36 6.36 0.00 1.75
130 131 6.175471 TGACAGCCATTATATGCAGGATAAG 58.825 40.000 9.12 0.29 0.00 1.73
131 132 4.946157 ACAGCCATTATATGCAGGATAAGC 59.054 41.667 9.12 8.00 0.00 3.09
154 155 1.913403 GCACATATGCGTGTTTGAAGC 59.087 47.619 1.58 0.00 43.33 3.86
155 156 2.414559 GCACATATGCGTGTTTGAAGCT 60.415 45.455 1.58 0.00 43.33 3.74
156 157 3.419915 CACATATGCGTGTTTGAAGCTC 58.580 45.455 1.58 0.00 32.00 4.09
157 158 3.073678 ACATATGCGTGTTTGAAGCTCA 58.926 40.909 1.58 0.00 0.00 4.26
158 159 3.125829 ACATATGCGTGTTTGAAGCTCAG 59.874 43.478 1.58 0.00 0.00 3.35
159 160 1.882912 ATGCGTGTTTGAAGCTCAGA 58.117 45.000 0.00 0.00 0.00 3.27
160 161 1.220529 TGCGTGTTTGAAGCTCAGAG 58.779 50.000 0.00 0.00 0.00 3.35
161 162 0.110464 GCGTGTTTGAAGCTCAGAGC 60.110 55.000 15.25 15.25 42.84 4.09
162 163 0.514691 CGTGTTTGAAGCTCAGAGCC 59.485 55.000 19.40 5.23 43.77 4.70
163 164 0.877743 GTGTTTGAAGCTCAGAGCCC 59.122 55.000 19.40 11.76 43.77 5.19
164 165 0.250901 TGTTTGAAGCTCAGAGCCCC 60.251 55.000 19.40 11.39 43.77 5.80
165 166 0.250901 GTTTGAAGCTCAGAGCCCCA 60.251 55.000 19.40 13.90 43.77 4.96
166 167 0.478072 TTTGAAGCTCAGAGCCCCAA 59.522 50.000 19.40 18.69 43.77 4.12
167 168 0.478072 TTGAAGCTCAGAGCCCCAAA 59.522 50.000 19.40 6.09 43.77 3.28
168 169 0.700564 TGAAGCTCAGAGCCCCAAAT 59.299 50.000 19.40 0.00 43.77 2.32
169 170 1.076024 TGAAGCTCAGAGCCCCAAATT 59.924 47.619 19.40 5.38 43.77 1.82
170 171 2.308570 TGAAGCTCAGAGCCCCAAATTA 59.691 45.455 19.40 0.00 43.77 1.40
171 172 3.053395 TGAAGCTCAGAGCCCCAAATTAT 60.053 43.478 19.40 0.00 43.77 1.28
172 173 2.941480 AGCTCAGAGCCCCAAATTATG 58.059 47.619 19.40 0.00 43.77 1.90
173 174 2.511218 AGCTCAGAGCCCCAAATTATGA 59.489 45.455 19.40 0.00 43.77 2.15
174 175 3.139770 AGCTCAGAGCCCCAAATTATGAT 59.860 43.478 19.40 0.00 43.77 2.45
175 176 4.352001 AGCTCAGAGCCCCAAATTATGATA 59.648 41.667 19.40 0.00 43.77 2.15
697 705 1.290324 GAGAGAAGGAGTGCGTGCA 59.710 57.895 0.00 0.00 0.00 4.57
931 939 0.471617 AGGTGTTGCTGAAGCTGAGT 59.528 50.000 3.61 0.00 42.66 3.41
1829 1875 2.537143 GGAGGTAGGTCACTGGAAGAA 58.463 52.381 0.00 0.00 37.43 2.52
1937 1983 0.689080 GAGACCTCATGGAGCCAGGA 60.689 60.000 3.66 3.66 35.38 3.86
2527 2573 4.100189 CGACCATGAAGGATAAGGAGAAGT 59.900 45.833 0.00 0.00 41.22 3.01
2983 3030 6.494491 TGGGATTCTTCATCAAACTTCATGTT 59.506 34.615 0.00 0.00 41.29 2.71
3104 3155 4.442401 TGTGGGATGATGCAGTTATGAT 57.558 40.909 0.00 0.00 0.00 2.45
3107 3158 5.307716 TGTGGGATGATGCAGTTATGATAGA 59.692 40.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.625786 TGGATATTTTGAGTGTCCATATCATG 57.374 34.615 0.00 0.00 32.72 3.07
17 18 9.818270 AATGGATATTTTGAGTGTCCATATCAT 57.182 29.630 5.70 0.00 43.95 2.45
20 21 9.236006 GCTAATGGATATTTTGAGTGTCCATAT 57.764 33.333 5.70 0.81 43.95 1.78
21 22 8.217111 TGCTAATGGATATTTTGAGTGTCCATA 58.783 33.333 5.70 0.00 43.95 2.74
22 23 7.062322 TGCTAATGGATATTTTGAGTGTCCAT 58.938 34.615 0.00 0.00 45.84 3.41
23 24 6.422333 TGCTAATGGATATTTTGAGTGTCCA 58.578 36.000 0.00 0.00 40.48 4.02
24 25 6.543831 ACTGCTAATGGATATTTTGAGTGTCC 59.456 38.462 0.00 0.00 0.00 4.02
25 26 7.559590 ACTGCTAATGGATATTTTGAGTGTC 57.440 36.000 0.00 0.00 0.00 3.67
26 27 8.486210 TCTACTGCTAATGGATATTTTGAGTGT 58.514 33.333 0.00 0.00 0.00 3.55
27 28 8.893219 TCTACTGCTAATGGATATTTTGAGTG 57.107 34.615 0.00 0.00 0.00 3.51
30 31 8.786898 GCATTCTACTGCTAATGGATATTTTGA 58.213 33.333 0.00 0.00 39.12 2.69
31 32 8.570488 TGCATTCTACTGCTAATGGATATTTTG 58.430 33.333 0.00 0.00 42.75 2.44
32 33 8.696043 TGCATTCTACTGCTAATGGATATTTT 57.304 30.769 0.00 0.00 42.75 1.82
33 34 8.696043 TTGCATTCTACTGCTAATGGATATTT 57.304 30.769 0.00 0.00 42.75 1.40
34 35 7.941238 ACTTGCATTCTACTGCTAATGGATATT 59.059 33.333 0.00 0.00 42.75 1.28
35 36 7.456725 ACTTGCATTCTACTGCTAATGGATAT 58.543 34.615 0.00 0.00 42.75 1.63
36 37 6.830912 ACTTGCATTCTACTGCTAATGGATA 58.169 36.000 0.00 0.00 42.75 2.59
37 38 5.688807 ACTTGCATTCTACTGCTAATGGAT 58.311 37.500 0.00 0.00 42.75 3.41
38 39 5.102953 ACTTGCATTCTACTGCTAATGGA 57.897 39.130 0.00 0.00 42.75 3.41
39 40 5.587844 AGAACTTGCATTCTACTGCTAATGG 59.412 40.000 0.59 0.00 42.75 3.16
40 41 6.674694 AGAACTTGCATTCTACTGCTAATG 57.325 37.500 0.59 0.00 42.75 1.90
41 42 7.824289 TGTTAGAACTTGCATTCTACTGCTAAT 59.176 33.333 8.90 0.00 40.18 1.73
42 43 7.158697 TGTTAGAACTTGCATTCTACTGCTAA 58.841 34.615 8.90 0.00 40.18 3.09
43 44 6.697395 TGTTAGAACTTGCATTCTACTGCTA 58.303 36.000 8.90 0.00 40.18 3.49
44 45 5.551233 TGTTAGAACTTGCATTCTACTGCT 58.449 37.500 8.90 0.00 40.18 4.24
45 46 5.862924 TGTTAGAACTTGCATTCTACTGC 57.137 39.130 8.90 4.65 40.18 4.40
52 53 8.982685 CGACTCATATATGTTAGAACTTGCATT 58.017 33.333 12.42 0.00 0.00 3.56
53 54 8.144478 ACGACTCATATATGTTAGAACTTGCAT 58.856 33.333 12.42 0.00 0.00 3.96
54 55 7.435192 CACGACTCATATATGTTAGAACTTGCA 59.565 37.037 12.42 0.00 0.00 4.08
55 56 7.648112 TCACGACTCATATATGTTAGAACTTGC 59.352 37.037 12.42 0.00 0.00 4.01
56 57 9.684448 ATCACGACTCATATATGTTAGAACTTG 57.316 33.333 12.42 7.62 0.00 3.16
79 80 6.404623 CGAAGGGCAGTGATTCAAATAAATCA 60.405 38.462 0.00 0.00 42.01 2.57
80 81 5.973565 CGAAGGGCAGTGATTCAAATAAATC 59.026 40.000 0.00 0.00 36.40 2.17
81 82 5.652014 TCGAAGGGCAGTGATTCAAATAAAT 59.348 36.000 0.00 0.00 0.00 1.40
82 83 5.007034 TCGAAGGGCAGTGATTCAAATAAA 58.993 37.500 0.00 0.00 0.00 1.40
83 84 4.584874 TCGAAGGGCAGTGATTCAAATAA 58.415 39.130 0.00 0.00 0.00 1.40
84 85 4.214986 TCGAAGGGCAGTGATTCAAATA 57.785 40.909 0.00 0.00 0.00 1.40
85 86 3.071874 TCGAAGGGCAGTGATTCAAAT 57.928 42.857 0.00 0.00 0.00 2.32
86 87 2.559698 TCGAAGGGCAGTGATTCAAA 57.440 45.000 0.00 0.00 0.00 2.69
87 88 2.027285 TCATCGAAGGGCAGTGATTCAA 60.027 45.455 0.00 0.00 0.00 2.69
88 89 1.554617 TCATCGAAGGGCAGTGATTCA 59.445 47.619 0.00 0.00 0.00 2.57
89 90 1.936547 GTCATCGAAGGGCAGTGATTC 59.063 52.381 0.00 0.00 0.00 2.52
90 91 1.278985 TGTCATCGAAGGGCAGTGATT 59.721 47.619 0.00 0.00 0.00 2.57
91 92 0.904649 TGTCATCGAAGGGCAGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
92 93 0.247460 CTGTCATCGAAGGGCAGTGA 59.753 55.000 12.43 0.00 0.00 3.41
93 94 1.364626 GCTGTCATCGAAGGGCAGTG 61.365 60.000 19.24 0.00 0.00 3.66
94 95 1.078848 GCTGTCATCGAAGGGCAGT 60.079 57.895 19.24 0.00 0.00 4.40
95 96 1.817099 GGCTGTCATCGAAGGGCAG 60.817 63.158 15.41 15.41 0.00 4.85
96 97 1.913951 ATGGCTGTCATCGAAGGGCA 61.914 55.000 0.00 0.00 36.93 5.36
97 98 0.749454 AATGGCTGTCATCGAAGGGC 60.749 55.000 0.00 0.00 34.44 5.19
98 99 2.620251 TAATGGCTGTCATCGAAGGG 57.380 50.000 0.00 0.00 34.44 3.95
99 100 4.093998 GCATATAATGGCTGTCATCGAAGG 59.906 45.833 0.00 0.00 34.44 3.46
100 101 4.692155 TGCATATAATGGCTGTCATCGAAG 59.308 41.667 0.00 0.00 34.44 3.79
101 102 4.640364 TGCATATAATGGCTGTCATCGAA 58.360 39.130 0.00 0.00 34.44 3.71
102 103 4.248058 CTGCATATAATGGCTGTCATCGA 58.752 43.478 0.00 0.00 34.44 3.59
103 104 3.373130 CCTGCATATAATGGCTGTCATCG 59.627 47.826 0.00 0.00 34.44 3.84
104 105 4.582869 TCCTGCATATAATGGCTGTCATC 58.417 43.478 0.00 0.00 34.44 2.92
105 106 4.645863 TCCTGCATATAATGGCTGTCAT 57.354 40.909 0.00 0.00 37.79 3.06
106 107 4.645863 ATCCTGCATATAATGGCTGTCA 57.354 40.909 0.00 0.00 0.00 3.58
107 108 5.065731 GCTTATCCTGCATATAATGGCTGTC 59.934 44.000 0.00 0.00 0.00 3.51
108 109 4.946157 GCTTATCCTGCATATAATGGCTGT 59.054 41.667 0.00 0.00 0.00 4.40
109 110 4.945543 TGCTTATCCTGCATATAATGGCTG 59.054 41.667 11.30 0.00 35.31 4.85
110 111 5.183530 TGCTTATCCTGCATATAATGGCT 57.816 39.130 11.30 0.00 35.31 4.75
120 121 2.061509 ATGTGCATGCTTATCCTGCA 57.938 45.000 20.33 5.41 43.20 4.41
121 122 4.092771 CATATGTGCATGCTTATCCTGC 57.907 45.455 20.33 0.00 36.45 4.85
135 136 3.120234 TGAGCTTCAAACACGCATATGTG 60.120 43.478 14.72 14.72 45.41 3.21
136 137 3.073678 TGAGCTTCAAACACGCATATGT 58.926 40.909 4.29 0.00 0.00 2.29
137 138 3.371898 TCTGAGCTTCAAACACGCATATG 59.628 43.478 0.00 0.00 0.00 1.78
138 139 3.599343 TCTGAGCTTCAAACACGCATAT 58.401 40.909 0.00 0.00 0.00 1.78
139 140 2.995939 CTCTGAGCTTCAAACACGCATA 59.004 45.455 0.00 0.00 0.00 3.14
140 141 1.802960 CTCTGAGCTTCAAACACGCAT 59.197 47.619 0.00 0.00 0.00 4.73
141 142 1.220529 CTCTGAGCTTCAAACACGCA 58.779 50.000 0.00 0.00 0.00 5.24
142 143 0.110464 GCTCTGAGCTTCAAACACGC 60.110 55.000 21.93 0.00 38.45 5.34
143 144 0.514691 GGCTCTGAGCTTCAAACACG 59.485 55.000 27.09 0.00 41.99 4.49
144 145 0.877743 GGGCTCTGAGCTTCAAACAC 59.122 55.000 27.09 9.36 41.99 3.32
145 146 0.250901 GGGGCTCTGAGCTTCAAACA 60.251 55.000 27.09 0.00 41.99 2.83
146 147 0.250901 TGGGGCTCTGAGCTTCAAAC 60.251 55.000 27.09 10.75 41.99 2.93
147 148 0.478072 TTGGGGCTCTGAGCTTCAAA 59.522 50.000 27.09 16.80 41.99 2.69
148 149 0.478072 TTTGGGGCTCTGAGCTTCAA 59.522 50.000 27.09 24.93 41.99 2.69
149 150 0.700564 ATTTGGGGCTCTGAGCTTCA 59.299 50.000 27.09 21.34 41.99 3.02
150 151 1.844687 AATTTGGGGCTCTGAGCTTC 58.155 50.000 27.09 19.29 41.99 3.86
151 152 3.053395 TCATAATTTGGGGCTCTGAGCTT 60.053 43.478 27.09 15.54 41.99 3.74
152 153 2.511218 TCATAATTTGGGGCTCTGAGCT 59.489 45.455 27.09 9.79 41.99 4.09
153 154 2.936202 TCATAATTTGGGGCTCTGAGC 58.064 47.619 21.17 21.17 41.46 4.26
174 175 8.491134 GGCCCATACCAGTTCAACATATATATA 58.509 37.037 0.00 0.00 0.00 0.86
175 176 7.346471 GGCCCATACCAGTTCAACATATATAT 58.654 38.462 0.00 0.00 0.00 0.86
404 407 3.063704 TCGCCGCCGTCTCCTTAA 61.064 61.111 0.00 0.00 35.54 1.85
931 939 1.133823 TCTCTTTCCAACCAGCAGCAA 60.134 47.619 0.00 0.00 0.00 3.91
1937 1983 3.983533 AGCCACCTCTACCTCTAGAAT 57.016 47.619 0.00 0.00 0.00 2.40
2527 2573 4.081476 CCTACAATGATGGATCATCGCCTA 60.081 45.833 2.59 0.00 46.22 3.93
2700 2746 9.764870 CATACATCCGAATGAATAAGCATAAAG 57.235 33.333 0.00 0.00 36.67 1.85
3104 3155 5.907866 TCGGTTGATCAAGTATGTGTCTA 57.092 39.130 8.80 0.00 0.00 2.59
3107 3158 4.451096 GTGTTCGGTTGATCAAGTATGTGT 59.549 41.667 8.80 0.00 0.00 3.72
3219 3270 1.464608 CGGTGATCACGAACAAAGCAT 59.535 47.619 19.33 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.