Multiple sequence alignment - TraesCS6A01G250700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G250700 chr6A 100.000 2255 0 0 1 2255 465212252 465214506 0.000000e+00 4165
1 TraesCS6A01G250700 chr6A 95.122 82 2 2 1 82 572712836 572712915 6.540000e-26 128
2 TraesCS6A01G250700 chrUn 94.102 1848 74 8 68 1887 216508123 216509963 0.000000e+00 2776
3 TraesCS6A01G250700 chr6D 94.048 1848 74 18 68 1887 389255164 389253325 0.000000e+00 2771
4 TraesCS6A01G250700 chr6D 93.939 1848 76 18 68 1887 389250369 389248530 0.000000e+00 2760
5 TraesCS6A01G250700 chr6D 94.385 374 21 0 1882 2255 157938897 157938524 1.940000e-160 575
6 TraesCS6A01G250700 chr6D 93.103 87 2 3 1 87 421367833 421367915 8.460000e-25 124
7 TraesCS6A01G250700 chr5D 94.044 1847 72 10 68 1887 503243267 503241432 0.000000e+00 2767
8 TraesCS6A01G250700 chr5D 93.994 1848 74 19 68 1887 503239021 503237183 0.000000e+00 2763
9 TraesCS6A01G250700 chr5D 93.990 1847 74 8 68 1887 503229240 503227404 0.000000e+00 2761
10 TraesCS6A01G250700 chr5D 93.285 685 20 3 1229 1887 503232335 503231651 0.000000e+00 987
11 TraesCS6A01G250700 chr5D 95.455 374 16 1 1882 2255 461564165 461563793 1.490000e-166 595
12 TraesCS6A01G250700 chr3A 93.994 1848 74 19 68 1887 66007137 66008975 0.000000e+00 2763
13 TraesCS6A01G250700 chr3A 93.393 1559 63 22 68 1596 593312683 593311135 0.000000e+00 2272
14 TraesCS6A01G250700 chr7B 93.936 1847 78 16 68 1887 662724399 662722560 0.000000e+00 2760
15 TraesCS6A01G250700 chr7B 93.939 1848 75 19 68 1887 663101430 663103268 0.000000e+00 2758
16 TraesCS6A01G250700 chr7B 95.874 412 17 0 1478 1889 392338292 392338703 0.000000e+00 667
17 TraesCS6A01G250700 chr3D 93.777 1848 78 19 68 1887 589265528 589267366 0.000000e+00 2741
18 TraesCS6A01G250700 chr3D 91.587 523 18 3 1391 1887 24148325 24148847 0.000000e+00 699
19 TraesCS6A01G250700 chr3D 94.385 374 21 0 1882 2255 172519939 172520312 1.940000e-160 575
20 TraesCS6A01G250700 chr3D 94.385 374 21 0 1882 2255 517656781 517657154 1.940000e-160 575
21 TraesCS6A01G250700 chr2A 93.506 1848 84 16 68 1887 335845307 335843468 0.000000e+00 2715
22 TraesCS6A01G250700 chr2A 94.652 374 20 0 1882 2255 502616610 502616983 4.170000e-162 580
23 TraesCS6A01G250700 chr2A 93.023 86 4 2 1 86 27714812 27714895 8.460000e-25 124
24 TraesCS6A01G250700 chr7D 95.187 374 18 0 1882 2255 230559312 230559685 1.930000e-165 592
25 TraesCS6A01G250700 chr7D 93.023 86 4 2 1 85 543799043 543799127 8.460000e-25 124
26 TraesCS6A01G250700 chr1A 95.187 374 18 0 1882 2255 221404248 221403875 1.930000e-165 592
27 TraesCS6A01G250700 chr1B 94.652 374 20 0 1882 2255 672704860 672705233 4.170000e-162 580
28 TraesCS6A01G250700 chr4D 94.385 374 21 0 1882 2255 453377569 453377196 1.940000e-160 575
29 TraesCS6A01G250700 chr2D 96.203 79 3 0 1 79 508484933 508485011 1.820000e-26 130
30 TraesCS6A01G250700 chr7A 95.122 82 2 2 1 81 3557500 3557580 6.540000e-26 128
31 TraesCS6A01G250700 chr5A 93.023 86 4 2 1 86 576779720 576779637 8.460000e-25 124
32 TraesCS6A01G250700 chr4B 92.941 85 6 0 1 85 531596063 531595979 8.460000e-25 124
33 TraesCS6A01G250700 chr3B 88.660 97 9 2 1 97 566594816 566594910 1.420000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G250700 chr6A 465212252 465214506 2254 False 4165.0 4165 100.0000 1 2255 1 chr6A.!!$F1 2254
1 TraesCS6A01G250700 chrUn 216508123 216509963 1840 False 2776.0 2776 94.1020 68 1887 1 chrUn.!!$F1 1819
2 TraesCS6A01G250700 chr6D 389248530 389255164 6634 True 2765.5 2771 93.9935 68 1887 2 chr6D.!!$R2 1819
3 TraesCS6A01G250700 chr5D 503237183 503243267 6084 True 2765.0 2767 94.0190 68 1887 2 chr5D.!!$R3 1819
4 TraesCS6A01G250700 chr5D 503227404 503232335 4931 True 1874.0 2761 93.6375 68 1887 2 chr5D.!!$R2 1819
5 TraesCS6A01G250700 chr3A 66007137 66008975 1838 False 2763.0 2763 93.9940 68 1887 1 chr3A.!!$F1 1819
6 TraesCS6A01G250700 chr3A 593311135 593312683 1548 True 2272.0 2272 93.3930 68 1596 1 chr3A.!!$R1 1528
7 TraesCS6A01G250700 chr7B 662722560 662724399 1839 True 2760.0 2760 93.9360 68 1887 1 chr7B.!!$R1 1819
8 TraesCS6A01G250700 chr7B 663101430 663103268 1838 False 2758.0 2758 93.9390 68 1887 1 chr7B.!!$F2 1819
9 TraesCS6A01G250700 chr3D 589265528 589267366 1838 False 2741.0 2741 93.7770 68 1887 1 chr3D.!!$F4 1819
10 TraesCS6A01G250700 chr3D 24148325 24148847 522 False 699.0 699 91.5870 1391 1887 1 chr3D.!!$F1 496
11 TraesCS6A01G250700 chr2A 335843468 335845307 1839 True 2715.0 2715 93.5060 68 1887 1 chr2A.!!$R1 1819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 3302 0.034089 CCTCCTTGGGCGGATTTCTT 60.034 55.0 0.0 0.0 31.43 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 14079 0.036858 GCCTCAGAACACTGGAGACC 60.037 60.0 0.0 0.0 33.04 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.633018 TTATTGACTCTAGGGCATATTTCCT 57.367 36.000 0.00 0.00 37.18 3.36
64 65 5.975988 TTGACTCTAGGGCATATTTCCTT 57.024 39.130 0.00 0.00 34.75 3.36
65 66 5.552870 TGACTCTAGGGCATATTTCCTTC 57.447 43.478 0.00 0.00 34.75 3.46
66 67 4.968719 TGACTCTAGGGCATATTTCCTTCA 59.031 41.667 0.00 0.00 34.75 3.02
114 3143 0.178967 TCAGGCTTTCACCCATTGCA 60.179 50.000 0.00 0.00 0.00 4.08
126 3155 1.134729 CCCATTGCAGAAAATTCCCCG 60.135 52.381 0.00 0.00 0.00 5.73
161 3190 1.502640 GAGTCTGGGTCGTGTCTCG 59.497 63.158 0.00 0.00 41.41 4.04
187 3216 3.708403 AGTGTGGCTGATCATCTTCAA 57.292 42.857 0.00 0.00 0.00 2.69
188 3217 4.025040 AGTGTGGCTGATCATCTTCAAA 57.975 40.909 0.00 0.00 0.00 2.69
248 3277 3.762288 TCACCAACTAGCTAATCAGACGT 59.238 43.478 0.00 0.00 0.00 4.34
273 3302 0.034089 CCTCCTTGGGCGGATTTCTT 60.034 55.000 0.00 0.00 31.43 2.52
287 3316 4.216257 CGGATTTCTTCTTTTGCTCCTCAA 59.784 41.667 0.00 0.00 0.00 3.02
293 3322 4.102524 TCTTCTTTTGCTCCTCAACCTACA 59.897 41.667 0.00 0.00 33.73 2.74
386 7661 1.133792 CCACTGGAAACACCACTTCCT 60.134 52.381 3.45 0.00 44.64 3.36
429 7704 2.042831 GCTGCCAGCGTTCATCCTT 61.043 57.895 0.00 0.00 0.00 3.36
453 7728 2.632028 CCAGGATCGAACTCTCCATGAT 59.368 50.000 5.61 0.00 33.75 2.45
498 7773 6.282199 AGCTTCCTTATTCGTAGACAAAGA 57.718 37.500 0.00 0.00 34.32 2.52
499 7774 6.334202 AGCTTCCTTATTCGTAGACAAAGAG 58.666 40.000 0.00 0.00 34.32 2.85
509 7784 4.219070 TCGTAGACAAAGAGGATTCGGAAA 59.781 41.667 0.00 0.00 0.00 3.13
511 7786 5.581085 CGTAGACAAAGAGGATTCGGAAATT 59.419 40.000 0.00 0.00 0.00 1.82
512 7787 6.755141 CGTAGACAAAGAGGATTCGGAAATTA 59.245 38.462 0.00 0.00 0.00 1.40
528 7803 5.067805 CGGAAATTATCTTTCCTTCCAAGGG 59.932 44.000 13.28 0.00 46.47 3.95
570 7845 6.560003 TTCAGATTATTAGCCTGGAGTTCA 57.440 37.500 0.00 0.00 0.00 3.18
577 7852 1.150536 GCCTGGAGTTCACCACCAA 59.849 57.895 0.00 0.00 35.91 3.67
597 7872 3.416414 ACAGTATAGCCAACCCTACCT 57.584 47.619 0.00 0.00 0.00 3.08
622 7897 1.361668 CGTCAATCCCACAAGCCTCG 61.362 60.000 0.00 0.00 0.00 4.63
656 7931 3.528370 CTCGTGGCGGGGGAGTAG 61.528 72.222 0.00 0.00 0.00 2.57
756 8031 4.762765 CACTCTACCGCTGAGTTATATCCT 59.237 45.833 0.00 0.00 42.21 3.24
782 8057 3.516615 CTGTCCCATCGAGAAAGAGAAC 58.483 50.000 0.00 0.00 0.00 3.01
793 8068 4.496183 CGAGAAAGAGAACTAACGAATCCG 59.504 45.833 0.00 0.00 42.50 4.18
794 8069 5.638783 GAGAAAGAGAACTAACGAATCCGA 58.361 41.667 0.00 0.00 39.50 4.55
795 8070 6.022163 AGAAAGAGAACTAACGAATCCGAA 57.978 37.500 0.00 0.00 39.50 4.30
796 8071 6.631962 AGAAAGAGAACTAACGAATCCGAAT 58.368 36.000 0.00 0.00 39.50 3.34
797 8072 6.752815 AGAAAGAGAACTAACGAATCCGAATC 59.247 38.462 0.00 0.00 39.50 2.52
798 8073 4.934515 AGAGAACTAACGAATCCGAATCC 58.065 43.478 0.00 0.00 39.50 3.01
851 8126 1.003696 CTTCCTCCGGGCTTTCTTTCT 59.996 52.381 0.00 0.00 0.00 2.52
919 8196 5.100943 GTCAACTGGTCCTATCGAAAGTAC 58.899 45.833 0.00 0.00 0.00 2.73
922 8199 3.376546 ACTGGTCCTATCGAAAGTACGAC 59.623 47.826 0.00 0.00 44.84 4.34
968 13040 7.066887 TCGCACATGGTTTCATAAAATCTGTAT 59.933 33.333 0.00 0.00 31.33 2.29
993 13065 6.376864 TGATTTTCCCAATCTAAATCGAGCAA 59.623 34.615 0.00 0.00 39.80 3.91
1014 13086 7.170965 AGCAAGTTTCCATGAAGAAGATCTTA 58.829 34.615 8.25 0.00 36.73 2.10
1068 13140 2.426381 AGAACCCGACTCGGTATTCTTC 59.574 50.000 20.83 11.90 46.80 2.87
1102 13175 2.787994 AGCAGAACCAAGTCAAGATGG 58.212 47.619 0.00 0.00 42.60 3.51
1139 13212 3.935203 TCTTCTTGCGCCAAAGATCTTAG 59.065 43.478 8.75 4.72 36.12 2.18
1145 13218 3.193267 TGCGCCAAAGATCTTAGCATTTT 59.807 39.130 23.05 0.31 0.00 1.82
1158 13231 6.068010 TCTTAGCATTTTTGAAGGAACTGGA 58.932 36.000 0.00 0.00 40.86 3.86
1226 13299 1.270839 CGCCCTTTTCTTGAGACCTCA 60.271 52.381 0.00 0.00 37.91 3.86
1447 13521 3.314307 TCGATATGAGGACCCAACTCT 57.686 47.619 0.00 0.00 35.98 3.24
1475 13549 2.380941 TGCCAGAATCCATGTTCCATG 58.619 47.619 0.00 0.00 0.00 3.66
1519 13619 0.178861 TCTGAGCCCCCTTTCTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
1526 13626 1.002857 CCCCTTTCTCCTTGGTCCAT 58.997 55.000 0.00 0.00 0.00 3.41
1583 13683 4.131649 TCACGGAAGAAAGAACTCACAA 57.868 40.909 0.00 0.00 0.00 3.33
1715 13816 4.510571 TCTTTTCTGTATACTTTCCCCGC 58.489 43.478 4.17 0.00 0.00 6.13
1776 13877 9.814899 GATCATATAGATATCCCTTCAACACAG 57.185 37.037 0.00 0.00 37.00 3.66
1795 13896 4.033358 CACAGCATAGGTCATCGAAAAGAC 59.967 45.833 7.30 7.30 0.00 3.01
1847 13948 7.286316 AGCCAGTTAGAAAATGGATTCCTATTG 59.714 37.037 10.12 0.00 36.09 1.90
1887 13988 4.853468 TGGATAAGCTCACATTAACCCA 57.147 40.909 0.00 0.00 0.00 4.51
1888 13989 5.387113 TGGATAAGCTCACATTAACCCAT 57.613 39.130 0.00 0.00 0.00 4.00
1889 13990 5.132502 TGGATAAGCTCACATTAACCCATG 58.867 41.667 0.00 0.00 0.00 3.66
1890 13991 5.133221 GGATAAGCTCACATTAACCCATGT 58.867 41.667 0.00 0.00 37.93 3.21
1891 13992 5.239525 GGATAAGCTCACATTAACCCATGTC 59.760 44.000 0.00 0.00 35.03 3.06
1892 13993 3.004752 AGCTCACATTAACCCATGTCC 57.995 47.619 0.00 0.00 35.03 4.02
1893 13994 2.578021 AGCTCACATTAACCCATGTCCT 59.422 45.455 0.00 0.00 35.03 3.85
1894 13995 3.780294 AGCTCACATTAACCCATGTCCTA 59.220 43.478 0.00 0.00 35.03 2.94
1895 13996 4.413520 AGCTCACATTAACCCATGTCCTAT 59.586 41.667 0.00 0.00 35.03 2.57
1896 13997 4.757149 GCTCACATTAACCCATGTCCTATC 59.243 45.833 0.00 0.00 35.03 2.08
1897 13998 5.687441 GCTCACATTAACCCATGTCCTATCA 60.687 44.000 0.00 0.00 35.03 2.15
1898 13999 6.514012 TCACATTAACCCATGTCCTATCAT 57.486 37.500 0.00 0.00 35.03 2.45
1899 14000 6.533730 TCACATTAACCCATGTCCTATCATC 58.466 40.000 0.00 0.00 35.03 2.92
1900 14001 6.101005 TCACATTAACCCATGTCCTATCATCA 59.899 38.462 0.00 0.00 35.03 3.07
1901 14002 6.205464 CACATTAACCCATGTCCTATCATCAC 59.795 42.308 0.00 0.00 35.03 3.06
1902 14003 3.475566 AACCCATGTCCTATCATCACG 57.524 47.619 0.00 0.00 0.00 4.35
1903 14004 2.398588 ACCCATGTCCTATCATCACGT 58.601 47.619 0.00 0.00 0.00 4.49
1904 14005 2.103094 ACCCATGTCCTATCATCACGTG 59.897 50.000 9.94 9.94 0.00 4.49
1905 14006 2.365293 CCCATGTCCTATCATCACGTGA 59.635 50.000 22.48 22.48 42.06 4.35
1906 14007 3.553715 CCCATGTCCTATCATCACGTGAG 60.554 52.174 24.41 15.36 40.92 3.51
1907 14008 3.319122 CCATGTCCTATCATCACGTGAGA 59.681 47.826 24.41 19.81 40.92 3.27
1908 14009 4.021632 CCATGTCCTATCATCACGTGAGAT 60.022 45.833 24.41 24.26 40.92 2.75
1909 14010 4.574599 TGTCCTATCATCACGTGAGATG 57.425 45.455 26.83 20.87 45.28 2.90
1910 14011 3.319122 TGTCCTATCATCACGTGAGATGG 59.681 47.826 26.83 24.66 44.30 3.51
1911 14012 2.893489 TCCTATCATCACGTGAGATGGG 59.107 50.000 31.56 31.56 44.30 4.00
1912 14013 2.028658 CCTATCATCACGTGAGATGGGG 60.029 54.545 30.70 25.91 44.30 4.96
1913 14014 1.500474 ATCATCACGTGAGATGGGGT 58.500 50.000 24.41 1.61 44.30 4.95
1914 14015 2.153034 TCATCACGTGAGATGGGGTA 57.847 50.000 24.41 0.00 44.30 3.69
1915 14016 2.031870 TCATCACGTGAGATGGGGTAG 58.968 52.381 24.41 5.14 44.30 3.18
1916 14017 1.757118 CATCACGTGAGATGGGGTAGT 59.243 52.381 24.41 0.00 41.29 2.73
1917 14018 1.471119 TCACGTGAGATGGGGTAGTC 58.529 55.000 15.76 0.00 0.00 2.59
1918 14019 1.182667 CACGTGAGATGGGGTAGTCA 58.817 55.000 10.90 0.00 0.00 3.41
1919 14020 1.757118 CACGTGAGATGGGGTAGTCAT 59.243 52.381 10.90 0.00 0.00 3.06
1920 14021 2.032620 ACGTGAGATGGGGTAGTCATC 58.967 52.381 0.00 0.00 40.79 2.92
1921 14022 2.031870 CGTGAGATGGGGTAGTCATCA 58.968 52.381 6.80 0.00 42.38 3.07
1922 14023 2.430694 CGTGAGATGGGGTAGTCATCAA 59.569 50.000 6.80 0.00 42.38 2.57
1923 14024 3.070159 CGTGAGATGGGGTAGTCATCAAT 59.930 47.826 6.80 0.00 42.38 2.57
1924 14025 4.384056 GTGAGATGGGGTAGTCATCAATG 58.616 47.826 6.80 0.00 42.38 2.82
1925 14026 3.392285 TGAGATGGGGTAGTCATCAATGG 59.608 47.826 6.80 0.00 42.38 3.16
1926 14027 3.392616 GAGATGGGGTAGTCATCAATGGT 59.607 47.826 6.80 0.00 42.38 3.55
1927 14028 3.137176 AGATGGGGTAGTCATCAATGGTG 59.863 47.826 6.80 0.00 42.38 4.17
1928 14029 2.556766 TGGGGTAGTCATCAATGGTGA 58.443 47.619 0.00 0.00 38.41 4.02
1929 14030 2.916269 TGGGGTAGTCATCAATGGTGAA 59.084 45.455 0.00 0.00 37.30 3.18
1930 14031 3.279434 GGGGTAGTCATCAATGGTGAAC 58.721 50.000 0.00 0.00 37.30 3.18
1931 14032 3.308117 GGGGTAGTCATCAATGGTGAACA 60.308 47.826 0.00 0.00 37.30 3.18
1932 14033 4.526970 GGGTAGTCATCAATGGTGAACAT 58.473 43.478 0.00 0.00 43.07 2.71
1933 14034 4.576463 GGGTAGTCATCAATGGTGAACATC 59.424 45.833 0.00 0.00 39.40 3.06
1934 14035 5.431765 GGTAGTCATCAATGGTGAACATCT 58.568 41.667 0.00 0.00 39.40 2.90
1935 14036 5.525378 GGTAGTCATCAATGGTGAACATCTC 59.475 44.000 0.00 0.00 39.40 2.75
1936 14037 5.432680 AGTCATCAATGGTGAACATCTCT 57.567 39.130 0.00 0.00 39.40 3.10
1937 14038 6.550938 AGTCATCAATGGTGAACATCTCTA 57.449 37.500 0.00 0.00 39.40 2.43
1938 14039 7.134362 AGTCATCAATGGTGAACATCTCTAT 57.866 36.000 0.00 0.00 39.40 1.98
1939 14040 6.990939 AGTCATCAATGGTGAACATCTCTATG 59.009 38.462 0.00 0.00 39.40 2.23
1992 14093 3.214696 CCTTTTGGTCTCCAGTGTTCT 57.785 47.619 0.00 0.00 33.81 3.01
1993 14094 2.880890 CCTTTTGGTCTCCAGTGTTCTG 59.119 50.000 0.00 0.00 33.81 3.02
1994 14095 3.433598 CCTTTTGGTCTCCAGTGTTCTGA 60.434 47.826 0.00 0.00 38.13 3.27
1995 14096 3.475566 TTTGGTCTCCAGTGTTCTGAG 57.524 47.619 0.00 0.00 43.76 3.35
1996 14097 1.342074 TGGTCTCCAGTGTTCTGAGG 58.658 55.000 0.00 0.00 43.76 3.86
1997 14098 0.036858 GGTCTCCAGTGTTCTGAGGC 60.037 60.000 0.00 0.00 43.76 4.70
1998 14099 0.036858 GTCTCCAGTGTTCTGAGGCC 60.037 60.000 0.00 0.00 43.76 5.19
1999 14100 0.471780 TCTCCAGTGTTCTGAGGCCA 60.472 55.000 5.01 0.00 43.76 5.36
2000 14101 0.617413 CTCCAGTGTTCTGAGGCCAT 59.383 55.000 5.01 0.00 43.76 4.40
2001 14102 0.325933 TCCAGTGTTCTGAGGCCATG 59.674 55.000 5.01 0.00 43.76 3.66
2002 14103 0.037303 CCAGTGTTCTGAGGCCATGT 59.963 55.000 5.01 0.00 43.76 3.21
2003 14104 1.446907 CAGTGTTCTGAGGCCATGTC 58.553 55.000 5.01 0.00 43.76 3.06
2004 14105 1.002888 CAGTGTTCTGAGGCCATGTCT 59.997 52.381 5.01 0.00 43.76 3.41
2005 14106 2.234661 CAGTGTTCTGAGGCCATGTCTA 59.765 50.000 5.01 0.00 43.76 2.59
2006 14107 3.110705 AGTGTTCTGAGGCCATGTCTAT 58.889 45.455 5.01 0.00 0.00 1.98
2007 14108 4.100035 CAGTGTTCTGAGGCCATGTCTATA 59.900 45.833 5.01 0.00 43.76 1.31
2008 14109 4.100189 AGTGTTCTGAGGCCATGTCTATAC 59.900 45.833 5.01 0.00 0.00 1.47
2009 14110 4.030216 TGTTCTGAGGCCATGTCTATACA 58.970 43.478 5.01 0.00 40.69 2.29
2010 14111 9.518300 CAGTGTTCTGAGGCCATGTCTATACAT 62.518 44.444 5.01 0.00 44.21 2.29
2022 14123 5.459536 TGTCTATACATGCCAGTCTCATC 57.540 43.478 0.00 0.00 0.00 2.92
2023 14124 4.895297 TGTCTATACATGCCAGTCTCATCA 59.105 41.667 0.00 0.00 0.00 3.07
2024 14125 5.363580 TGTCTATACATGCCAGTCTCATCAA 59.636 40.000 0.00 0.00 0.00 2.57
2025 14126 5.925397 GTCTATACATGCCAGTCTCATCAAG 59.075 44.000 0.00 0.00 0.00 3.02
2026 14127 4.767578 ATACATGCCAGTCTCATCAAGT 57.232 40.909 0.00 0.00 0.00 3.16
2027 14128 3.430042 ACATGCCAGTCTCATCAAGTT 57.570 42.857 0.00 0.00 0.00 2.66
2028 14129 3.759581 ACATGCCAGTCTCATCAAGTTT 58.240 40.909 0.00 0.00 0.00 2.66
2029 14130 4.910195 ACATGCCAGTCTCATCAAGTTTA 58.090 39.130 0.00 0.00 0.00 2.01
2030 14131 5.316167 ACATGCCAGTCTCATCAAGTTTAA 58.684 37.500 0.00 0.00 0.00 1.52
2031 14132 5.182001 ACATGCCAGTCTCATCAAGTTTAAC 59.818 40.000 0.00 0.00 0.00 2.01
2032 14133 4.072131 TGCCAGTCTCATCAAGTTTAACC 58.928 43.478 0.00 0.00 0.00 2.85
2033 14134 3.440522 GCCAGTCTCATCAAGTTTAACCC 59.559 47.826 0.00 0.00 0.00 4.11
2034 14135 4.651778 CCAGTCTCATCAAGTTTAACCCA 58.348 43.478 0.00 0.00 0.00 4.51
2035 14136 5.070001 CCAGTCTCATCAAGTTTAACCCAA 58.930 41.667 0.00 0.00 0.00 4.12
2036 14137 5.182001 CCAGTCTCATCAAGTTTAACCCAAG 59.818 44.000 0.00 0.00 0.00 3.61
2037 14138 5.765182 CAGTCTCATCAAGTTTAACCCAAGT 59.235 40.000 0.00 0.00 0.00 3.16
2038 14139 6.934645 CAGTCTCATCAAGTTTAACCCAAGTA 59.065 38.462 0.00 0.00 0.00 2.24
2039 14140 7.607991 CAGTCTCATCAAGTTTAACCCAAGTAT 59.392 37.037 0.00 0.00 0.00 2.12
2040 14141 8.164070 AGTCTCATCAAGTTTAACCCAAGTATT 58.836 33.333 0.00 0.00 0.00 1.89
2041 14142 8.451748 GTCTCATCAAGTTTAACCCAAGTATTC 58.548 37.037 0.00 0.00 0.00 1.75
2042 14143 8.383175 TCTCATCAAGTTTAACCCAAGTATTCT 58.617 33.333 0.00 0.00 0.00 2.40
2043 14144 8.335532 TCATCAAGTTTAACCCAAGTATTCTG 57.664 34.615 0.00 0.00 0.00 3.02
2044 14145 6.569179 TCAAGTTTAACCCAAGTATTCTGC 57.431 37.500 0.00 0.00 0.00 4.26
2045 14146 6.065374 TCAAGTTTAACCCAAGTATTCTGCA 58.935 36.000 0.00 0.00 0.00 4.41
2046 14147 6.719370 TCAAGTTTAACCCAAGTATTCTGCAT 59.281 34.615 0.00 0.00 0.00 3.96
2047 14148 6.515272 AGTTTAACCCAAGTATTCTGCATG 57.485 37.500 0.00 0.00 0.00 4.06
2048 14149 6.010219 AGTTTAACCCAAGTATTCTGCATGT 58.990 36.000 0.00 0.00 0.00 3.21
2049 14150 5.895636 TTAACCCAAGTATTCTGCATGTG 57.104 39.130 0.00 0.00 0.00 3.21
2050 14151 3.439857 ACCCAAGTATTCTGCATGTGT 57.560 42.857 0.00 0.00 0.00 3.72
2051 14152 4.568072 ACCCAAGTATTCTGCATGTGTA 57.432 40.909 0.00 0.00 0.00 2.90
2052 14153 4.917385 ACCCAAGTATTCTGCATGTGTAA 58.083 39.130 0.00 0.00 0.00 2.41
2053 14154 5.321102 ACCCAAGTATTCTGCATGTGTAAA 58.679 37.500 0.00 0.00 0.00 2.01
2054 14155 5.772672 ACCCAAGTATTCTGCATGTGTAAAA 59.227 36.000 0.00 0.00 0.00 1.52
2055 14156 6.092748 CCCAAGTATTCTGCATGTGTAAAAC 58.907 40.000 0.00 0.00 0.00 2.43
2056 14157 6.071952 CCCAAGTATTCTGCATGTGTAAAACT 60.072 38.462 0.00 0.00 0.00 2.66
2057 14158 6.803320 CCAAGTATTCTGCATGTGTAAAACTG 59.197 38.462 0.00 0.00 0.00 3.16
2058 14159 7.362662 CAAGTATTCTGCATGTGTAAAACTGT 58.637 34.615 0.00 0.00 0.00 3.55
2059 14160 7.133891 AGTATTCTGCATGTGTAAAACTGTC 57.866 36.000 0.00 0.00 0.00 3.51
2060 14161 4.829064 TTCTGCATGTGTAAAACTGTCC 57.171 40.909 0.00 0.00 0.00 4.02
2061 14162 4.085357 TCTGCATGTGTAAAACTGTCCT 57.915 40.909 0.00 0.00 0.00 3.85
2062 14163 5.222079 TCTGCATGTGTAAAACTGTCCTA 57.778 39.130 0.00 0.00 0.00 2.94
2063 14164 4.994852 TCTGCATGTGTAAAACTGTCCTAC 59.005 41.667 0.00 0.00 0.00 3.18
2064 14165 4.709250 TGCATGTGTAAAACTGTCCTACA 58.291 39.130 0.00 0.00 0.00 2.74
2065 14166 4.513692 TGCATGTGTAAAACTGTCCTACAC 59.486 41.667 18.38 18.38 43.67 2.90
2066 14167 4.083484 GCATGTGTAAAACTGTCCTACACC 60.083 45.833 20.64 9.10 43.05 4.16
2067 14168 4.075963 TGTGTAAAACTGTCCTACACCC 57.924 45.455 20.64 6.48 43.05 4.61
2068 14169 3.062042 GTGTAAAACTGTCCTACACCCG 58.938 50.000 16.00 0.00 39.56 5.28
2069 14170 2.699846 TGTAAAACTGTCCTACACCCGT 59.300 45.455 0.00 0.00 0.00 5.28
2070 14171 3.134442 TGTAAAACTGTCCTACACCCGTT 59.866 43.478 0.00 0.00 0.00 4.44
2071 14172 2.249844 AAACTGTCCTACACCCGTTG 57.750 50.000 0.00 0.00 0.00 4.10
2072 14173 1.125633 AACTGTCCTACACCCGTTGT 58.874 50.000 0.00 0.00 42.84 3.32
2073 14174 1.999648 ACTGTCCTACACCCGTTGTA 58.000 50.000 0.00 0.00 39.91 2.41
2074 14175 2.532843 ACTGTCCTACACCCGTTGTAT 58.467 47.619 0.00 0.00 40.06 2.29
2075 14176 2.232941 ACTGTCCTACACCCGTTGTATG 59.767 50.000 0.00 0.00 40.06 2.39
2076 14177 2.232941 CTGTCCTACACCCGTTGTATGT 59.767 50.000 0.00 0.00 40.06 2.29
2077 14178 2.028839 TGTCCTACACCCGTTGTATGTG 60.029 50.000 0.00 0.00 40.06 3.21
2078 14179 2.231964 GTCCTACACCCGTTGTATGTGA 59.768 50.000 0.00 0.00 40.06 3.58
2079 14180 2.898612 TCCTACACCCGTTGTATGTGAA 59.101 45.455 0.00 0.00 40.06 3.18
2080 14181 2.997986 CCTACACCCGTTGTATGTGAAC 59.002 50.000 0.00 0.00 40.06 3.18
2081 14182 1.504359 ACACCCGTTGTATGTGAACG 58.496 50.000 0.00 0.00 44.59 3.95
2082 14183 1.202557 ACACCCGTTGTATGTGAACGT 60.203 47.619 0.00 0.00 43.70 3.99
2083 14184 2.035704 ACACCCGTTGTATGTGAACGTA 59.964 45.455 0.00 0.00 43.70 3.57
2084 14185 2.664568 CACCCGTTGTATGTGAACGTAG 59.335 50.000 0.00 0.00 43.70 3.51
2085 14186 2.557924 ACCCGTTGTATGTGAACGTAGA 59.442 45.455 0.00 0.00 43.70 2.59
2086 14187 3.176708 CCCGTTGTATGTGAACGTAGAG 58.823 50.000 0.00 0.00 43.70 2.43
2087 14188 3.366679 CCCGTTGTATGTGAACGTAGAGT 60.367 47.826 0.00 0.00 43.70 3.24
2088 14189 3.850273 CCGTTGTATGTGAACGTAGAGTC 59.150 47.826 0.00 0.00 43.70 3.36
2089 14190 4.379186 CCGTTGTATGTGAACGTAGAGTCT 60.379 45.833 0.00 0.00 43.70 3.24
2090 14191 5.163824 CCGTTGTATGTGAACGTAGAGTCTA 60.164 44.000 0.00 0.00 43.70 2.59
2091 14192 6.457934 CCGTTGTATGTGAACGTAGAGTCTAT 60.458 42.308 2.51 0.00 43.70 1.98
2092 14193 6.628065 CGTTGTATGTGAACGTAGAGTCTATC 59.372 42.308 2.51 0.00 41.00 2.08
2093 14194 7.470079 GTTGTATGTGAACGTAGAGTCTATCA 58.530 38.462 2.51 0.42 0.00 2.15
2094 14195 7.012959 TGTATGTGAACGTAGAGTCTATCAC 57.987 40.000 19.15 19.15 38.08 3.06
2096 14197 5.292671 TGTGAACGTAGAGTCTATCACAC 57.707 43.478 22.60 19.02 41.39 3.82
2097 14198 4.155462 TGTGAACGTAGAGTCTATCACACC 59.845 45.833 22.60 6.32 41.39 4.16
2098 14199 3.693085 TGAACGTAGAGTCTATCACACCC 59.307 47.826 2.51 0.00 0.00 4.61
2099 14200 2.286872 ACGTAGAGTCTATCACACCCG 58.713 52.381 2.51 3.02 0.00 5.28
2100 14201 2.093288 ACGTAGAGTCTATCACACCCGA 60.093 50.000 2.51 0.00 0.00 5.14
2101 14202 3.139850 CGTAGAGTCTATCACACCCGAT 58.860 50.000 2.51 0.00 0.00 4.18
2102 14203 3.186817 CGTAGAGTCTATCACACCCGATC 59.813 52.174 2.51 0.00 0.00 3.69
2103 14204 3.298686 AGAGTCTATCACACCCGATCA 57.701 47.619 0.00 0.00 0.00 2.92
2104 14205 3.838565 AGAGTCTATCACACCCGATCAT 58.161 45.455 0.00 0.00 0.00 2.45
2105 14206 3.823873 AGAGTCTATCACACCCGATCATC 59.176 47.826 0.00 0.00 0.00 2.92
2106 14207 3.566351 AGTCTATCACACCCGATCATCA 58.434 45.455 0.00 0.00 0.00 3.07
2107 14208 3.319405 AGTCTATCACACCCGATCATCAC 59.681 47.826 0.00 0.00 0.00 3.06
2108 14209 2.293399 TCTATCACACCCGATCATCACG 59.707 50.000 0.00 0.00 0.00 4.35
2109 14210 0.824109 ATCACACCCGATCATCACGT 59.176 50.000 0.00 0.00 0.00 4.49
2110 14211 0.108851 TCACACCCGATCATCACGTG 60.109 55.000 9.94 9.94 0.00 4.49
2111 14212 1.083806 CACACCCGATCATCACGTGG 61.084 60.000 17.00 0.00 0.00 4.94
2112 14213 1.218047 CACCCGATCATCACGTGGT 59.782 57.895 17.00 5.26 35.78 4.16
2113 14214 1.083806 CACCCGATCATCACGTGGTG 61.084 60.000 23.01 23.01 41.46 4.17
2114 14215 1.218047 CCCGATCATCACGTGGTGT 59.782 57.895 27.10 15.24 34.79 4.16
2115 14216 0.806102 CCCGATCATCACGTGGTGTC 60.806 60.000 27.10 21.03 34.79 3.67
2116 14217 0.173481 CCGATCATCACGTGGTGTCT 59.827 55.000 27.10 16.35 34.79 3.41
2117 14218 1.550065 CGATCATCACGTGGTGTCTC 58.450 55.000 27.10 21.93 34.79 3.36
2118 14219 1.550065 GATCATCACGTGGTGTCTCG 58.450 55.000 27.10 2.49 34.79 4.04
2119 14220 1.132453 GATCATCACGTGGTGTCTCGA 59.868 52.381 27.10 9.16 34.79 4.04
2120 14221 0.955905 TCATCACGTGGTGTCTCGAA 59.044 50.000 27.10 5.07 34.79 3.71
2121 14222 1.338655 TCATCACGTGGTGTCTCGAAA 59.661 47.619 27.10 4.29 34.79 3.46
2122 14223 1.455786 CATCACGTGGTGTCTCGAAAC 59.544 52.381 20.85 0.00 34.79 2.78
2123 14224 0.456628 TCACGTGGTGTCTCGAAACA 59.543 50.000 17.00 0.00 34.79 2.83
2124 14225 1.135053 TCACGTGGTGTCTCGAAACAA 60.135 47.619 17.00 0.00 34.79 2.83
2125 14226 1.661617 CACGTGGTGTCTCGAAACAAA 59.338 47.619 7.95 0.00 34.43 2.83
2126 14227 1.931172 ACGTGGTGTCTCGAAACAAAG 59.069 47.619 0.00 0.00 34.43 2.77
2127 14228 2.198406 CGTGGTGTCTCGAAACAAAGA 58.802 47.619 0.00 0.00 32.30 2.52
2128 14229 2.605818 CGTGGTGTCTCGAAACAAAGAA 59.394 45.455 0.00 0.00 32.30 2.52
2129 14230 3.543460 CGTGGTGTCTCGAAACAAAGAAC 60.543 47.826 0.00 0.00 32.30 3.01
2130 14231 3.621715 GTGGTGTCTCGAAACAAAGAACT 59.378 43.478 0.00 0.00 0.00 3.01
2131 14232 4.807304 GTGGTGTCTCGAAACAAAGAACTA 59.193 41.667 0.00 0.00 0.00 2.24
2132 14233 5.465724 GTGGTGTCTCGAAACAAAGAACTAT 59.534 40.000 0.00 0.00 0.00 2.12
2133 14234 6.643770 GTGGTGTCTCGAAACAAAGAACTATA 59.356 38.462 0.00 0.00 0.00 1.31
2134 14235 6.866770 TGGTGTCTCGAAACAAAGAACTATAG 59.133 38.462 0.00 0.00 0.00 1.31
2135 14236 6.183360 GGTGTCTCGAAACAAAGAACTATAGC 60.183 42.308 0.00 0.00 0.00 2.97
2136 14237 6.365247 GTGTCTCGAAACAAAGAACTATAGCA 59.635 38.462 0.00 0.00 0.00 3.49
2137 14238 6.926826 TGTCTCGAAACAAAGAACTATAGCAA 59.073 34.615 0.00 0.00 0.00 3.91
2138 14239 7.602644 TGTCTCGAAACAAAGAACTATAGCAAT 59.397 33.333 0.00 0.00 0.00 3.56
2139 14240 7.900352 GTCTCGAAACAAAGAACTATAGCAATG 59.100 37.037 0.00 0.00 0.00 2.82
2140 14241 7.064609 TCTCGAAACAAAGAACTATAGCAATGG 59.935 37.037 0.00 0.00 0.00 3.16
2141 14242 6.653320 TCGAAACAAAGAACTATAGCAATGGT 59.347 34.615 0.00 0.00 0.00 3.55
2142 14243 6.742718 CGAAACAAAGAACTATAGCAATGGTG 59.257 38.462 0.00 0.00 0.00 4.17
2154 14255 2.715749 CAATGGTGCATACTCAGGGA 57.284 50.000 0.00 0.00 0.00 4.20
2155 14256 2.569059 CAATGGTGCATACTCAGGGAG 58.431 52.381 0.00 0.00 35.52 4.30
2156 14257 2.171237 CAATGGTGCATACTCAGGGAGA 59.829 50.000 0.00 0.00 33.32 3.71
2157 14258 1.951209 TGGTGCATACTCAGGGAGAA 58.049 50.000 0.00 0.00 33.32 2.87
2158 14259 1.555075 TGGTGCATACTCAGGGAGAAC 59.445 52.381 0.00 0.00 33.32 3.01
2159 14260 1.555075 GGTGCATACTCAGGGAGAACA 59.445 52.381 0.00 0.00 33.32 3.18
2160 14261 2.622436 GTGCATACTCAGGGAGAACAC 58.378 52.381 0.00 0.00 33.32 3.32
2161 14262 2.234908 GTGCATACTCAGGGAGAACACT 59.765 50.000 0.00 0.00 33.32 3.55
2162 14263 2.906389 TGCATACTCAGGGAGAACACTT 59.094 45.455 0.00 0.00 33.32 3.16
2163 14264 3.327757 TGCATACTCAGGGAGAACACTTT 59.672 43.478 0.00 0.00 33.32 2.66
2164 14265 4.202461 TGCATACTCAGGGAGAACACTTTT 60.202 41.667 0.00 0.00 33.32 2.27
2165 14266 5.012664 TGCATACTCAGGGAGAACACTTTTA 59.987 40.000 0.00 0.00 33.32 1.52
2166 14267 5.351740 GCATACTCAGGGAGAACACTTTTAC 59.648 44.000 0.00 0.00 33.32 2.01
2167 14268 4.353383 ACTCAGGGAGAACACTTTTACC 57.647 45.455 0.00 0.00 33.32 2.85
2168 14269 3.974642 ACTCAGGGAGAACACTTTTACCT 59.025 43.478 0.00 0.00 33.32 3.08
2169 14270 4.412528 ACTCAGGGAGAACACTTTTACCTT 59.587 41.667 0.00 0.00 33.32 3.50
2170 14271 4.714632 TCAGGGAGAACACTTTTACCTTG 58.285 43.478 0.00 0.00 0.00 3.61
2171 14272 4.410883 TCAGGGAGAACACTTTTACCTTGA 59.589 41.667 0.00 0.00 32.67 3.02
2172 14273 5.104277 TCAGGGAGAACACTTTTACCTTGAA 60.104 40.000 0.00 0.00 32.30 2.69
2173 14274 5.592688 CAGGGAGAACACTTTTACCTTGAAA 59.407 40.000 0.00 0.00 0.00 2.69
2174 14275 6.265422 CAGGGAGAACACTTTTACCTTGAAAT 59.735 38.462 0.00 0.00 0.00 2.17
2175 14276 6.839134 AGGGAGAACACTTTTACCTTGAAATT 59.161 34.615 0.00 0.00 0.00 1.82
2176 14277 7.344612 AGGGAGAACACTTTTACCTTGAAATTT 59.655 33.333 0.00 0.00 0.00 1.82
2177 14278 8.635328 GGGAGAACACTTTTACCTTGAAATTTA 58.365 33.333 0.00 0.00 0.00 1.40
2178 14279 9.678941 GGAGAACACTTTTACCTTGAAATTTAG 57.321 33.333 0.00 0.00 0.00 1.85
2184 14285 9.463443 CACTTTTACCTTGAAATTTAGTGAAGG 57.537 33.333 12.80 12.80 39.35 3.46
2185 14286 8.638873 ACTTTTACCTTGAAATTTAGTGAAGGG 58.361 33.333 16.39 5.86 38.00 3.95
2186 14287 8.770010 TTTTACCTTGAAATTTAGTGAAGGGA 57.230 30.769 16.39 9.33 38.00 4.20
2187 14288 8.950007 TTTACCTTGAAATTTAGTGAAGGGAT 57.050 30.769 16.39 5.24 38.00 3.85
2188 14289 8.575649 TTACCTTGAAATTTAGTGAAGGGATC 57.424 34.615 16.39 0.00 38.00 3.36
2189 14290 6.552008 ACCTTGAAATTTAGTGAAGGGATCA 58.448 36.000 16.39 0.00 38.00 2.92
2190 14291 7.184862 ACCTTGAAATTTAGTGAAGGGATCAT 58.815 34.615 16.39 0.51 40.97 2.45
2191 14292 7.340487 ACCTTGAAATTTAGTGAAGGGATCATC 59.660 37.037 16.39 0.00 40.97 2.92
2192 14293 7.559170 CCTTGAAATTTAGTGAAGGGATCATCT 59.441 37.037 0.00 0.00 40.97 2.90
2193 14294 8.884124 TTGAAATTTAGTGAAGGGATCATCTT 57.116 30.769 0.00 0.00 40.97 2.40
2194 14295 9.973661 TTGAAATTTAGTGAAGGGATCATCTTA 57.026 29.630 0.00 0.00 40.97 2.10
2200 14301 9.507329 TTTAGTGAAGGGATCATCTTATAATGC 57.493 33.333 0.00 0.00 40.97 3.56
2201 14302 7.327064 AGTGAAGGGATCATCTTATAATGCT 57.673 36.000 0.00 0.00 40.97 3.79
2202 14303 8.441311 AGTGAAGGGATCATCTTATAATGCTA 57.559 34.615 0.00 0.00 40.97 3.49
2203 14304 8.317679 AGTGAAGGGATCATCTTATAATGCTAC 58.682 37.037 0.00 0.00 40.97 3.58
2204 14305 7.550906 GTGAAGGGATCATCTTATAATGCTACC 59.449 40.741 0.00 0.00 40.97 3.18
2205 14306 6.227298 AGGGATCATCTTATAATGCTACCG 57.773 41.667 0.00 0.00 0.00 4.02
2206 14307 5.721960 AGGGATCATCTTATAATGCTACCGT 59.278 40.000 0.00 0.00 0.00 4.83
2207 14308 6.043411 GGGATCATCTTATAATGCTACCGTC 58.957 44.000 0.00 0.00 0.00 4.79
2208 14309 5.744345 GGATCATCTTATAATGCTACCGTCG 59.256 44.000 0.00 0.00 0.00 5.12
2209 14310 5.700722 TCATCTTATAATGCTACCGTCGT 57.299 39.130 0.00 0.00 0.00 4.34
2210 14311 6.080648 TCATCTTATAATGCTACCGTCGTT 57.919 37.500 0.00 0.00 0.00 3.85
2211 14312 6.147581 TCATCTTATAATGCTACCGTCGTTC 58.852 40.000 0.00 0.00 0.00 3.95
2212 14313 5.762825 TCTTATAATGCTACCGTCGTTCT 57.237 39.130 0.00 0.00 0.00 3.01
2213 14314 6.866010 TCTTATAATGCTACCGTCGTTCTA 57.134 37.500 0.00 0.00 0.00 2.10
2214 14315 7.263100 TCTTATAATGCTACCGTCGTTCTAA 57.737 36.000 0.00 0.00 0.00 2.10
2215 14316 7.358066 TCTTATAATGCTACCGTCGTTCTAAG 58.642 38.462 0.00 0.00 0.00 2.18
2216 14317 2.205307 ATGCTACCGTCGTTCTAAGC 57.795 50.000 0.00 0.00 0.00 3.09
2217 14318 0.883153 TGCTACCGTCGTTCTAAGCA 59.117 50.000 0.00 0.00 37.62 3.91
2218 14319 1.270274 TGCTACCGTCGTTCTAAGCAA 59.730 47.619 0.00 0.00 37.05 3.91
2219 14320 2.288334 TGCTACCGTCGTTCTAAGCAAA 60.288 45.455 0.00 0.00 37.05 3.68
2220 14321 2.733026 GCTACCGTCGTTCTAAGCAAAA 59.267 45.455 0.00 0.00 0.00 2.44
2221 14322 3.370061 GCTACCGTCGTTCTAAGCAAAAT 59.630 43.478 0.00 0.00 0.00 1.82
2222 14323 4.563976 GCTACCGTCGTTCTAAGCAAAATA 59.436 41.667 0.00 0.00 0.00 1.40
2223 14324 5.062558 GCTACCGTCGTTCTAAGCAAAATAA 59.937 40.000 0.00 0.00 0.00 1.40
2224 14325 5.526010 ACCGTCGTTCTAAGCAAAATAAG 57.474 39.130 0.00 0.00 0.00 1.73
2225 14326 5.232463 ACCGTCGTTCTAAGCAAAATAAGA 58.768 37.500 0.00 0.00 0.00 2.10
2226 14327 5.873164 ACCGTCGTTCTAAGCAAAATAAGAT 59.127 36.000 0.00 0.00 0.00 2.40
2227 14328 6.183360 ACCGTCGTTCTAAGCAAAATAAGATG 60.183 38.462 0.00 0.00 0.00 2.90
2228 14329 5.672856 CGTCGTTCTAAGCAAAATAAGATGC 59.327 40.000 0.00 0.00 42.87 3.91
2229 14330 6.542852 GTCGTTCTAAGCAAAATAAGATGCA 58.457 36.000 0.00 0.00 44.95 3.96
2230 14331 7.189512 GTCGTTCTAAGCAAAATAAGATGCAT 58.810 34.615 0.00 0.00 44.95 3.96
2231 14332 8.335356 GTCGTTCTAAGCAAAATAAGATGCATA 58.665 33.333 0.00 0.00 44.95 3.14
2232 14333 8.888716 TCGTTCTAAGCAAAATAAGATGCATAA 58.111 29.630 0.00 0.00 44.95 1.90
2233 14334 9.502145 CGTTCTAAGCAAAATAAGATGCATAAA 57.498 29.630 0.00 0.00 44.95 1.40
2249 14350 9.961265 AGATGCATAAAAGATAAACATCACATG 57.039 29.630 0.00 0.00 35.91 3.21
2250 14351 7.990541 TGCATAAAAGATAAACATCACATGC 57.009 32.000 0.00 0.00 36.48 4.06
2251 14352 7.545489 TGCATAAAAGATAAACATCACATGCA 58.455 30.769 0.00 0.00 41.78 3.96
2252 14353 8.033626 TGCATAAAAGATAAACATCACATGCAA 58.966 29.630 0.00 0.00 41.27 4.08
2253 14354 9.037737 GCATAAAAGATAAACATCACATGCAAT 57.962 29.630 0.00 0.00 36.09 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.959721 GGAAATATGCCCTAGAGTCAATAATAA 57.040 33.333 0.00 0.00 0.00 1.40
37 38 9.338968 AGGAAATATGCCCTAGAGTCAATAATA 57.661 33.333 0.00 0.00 0.00 0.98
39 40 7.633018 AGGAAATATGCCCTAGAGTCAATAA 57.367 36.000 0.00 0.00 0.00 1.40
40 41 7.292356 TGAAGGAAATATGCCCTAGAGTCAATA 59.708 37.037 0.00 0.00 31.36 1.90
42 43 5.428457 TGAAGGAAATATGCCCTAGAGTCAA 59.572 40.000 0.00 0.00 31.36 3.18
43 44 4.968719 TGAAGGAAATATGCCCTAGAGTCA 59.031 41.667 0.00 0.00 31.36 3.41
44 45 5.301555 GTGAAGGAAATATGCCCTAGAGTC 58.698 45.833 0.00 0.00 31.36 3.36
45 46 4.103311 GGTGAAGGAAATATGCCCTAGAGT 59.897 45.833 0.00 0.00 31.36 3.24
46 47 4.349342 AGGTGAAGGAAATATGCCCTAGAG 59.651 45.833 0.00 0.00 31.36 2.43
47 48 4.307259 AGGTGAAGGAAATATGCCCTAGA 58.693 43.478 0.00 0.00 31.36 2.43
48 49 4.713792 AGGTGAAGGAAATATGCCCTAG 57.286 45.455 0.00 0.00 31.36 3.02
49 50 4.141251 GGAAGGTGAAGGAAATATGCCCTA 60.141 45.833 0.00 0.00 31.36 3.53
51 52 2.959030 GGAAGGTGAAGGAAATATGCCC 59.041 50.000 0.00 0.00 0.00 5.36
54 55 4.860022 AGGTGGAAGGTGAAGGAAATATG 58.140 43.478 0.00 0.00 0.00 1.78
56 57 3.265995 GGAGGTGGAAGGTGAAGGAAATA 59.734 47.826 0.00 0.00 0.00 1.40
57 58 2.041755 GGAGGTGGAAGGTGAAGGAAAT 59.958 50.000 0.00 0.00 0.00 2.17
58 59 1.423921 GGAGGTGGAAGGTGAAGGAAA 59.576 52.381 0.00 0.00 0.00 3.13
59 60 1.064825 GGAGGTGGAAGGTGAAGGAA 58.935 55.000 0.00 0.00 0.00 3.36
63 64 1.752198 CGTGGAGGTGGAAGGTGAA 59.248 57.895 0.00 0.00 0.00 3.18
64 65 2.879233 GCGTGGAGGTGGAAGGTGA 61.879 63.158 0.00 0.00 0.00 4.02
65 66 2.358737 GCGTGGAGGTGGAAGGTG 60.359 66.667 0.00 0.00 0.00 4.00
66 67 4.003788 CGCGTGGAGGTGGAAGGT 62.004 66.667 0.00 0.00 0.00 3.50
114 3143 1.598701 GCAGCAGCGGGGAATTTTCT 61.599 55.000 0.00 0.00 0.00 2.52
135 3164 1.757340 GACCCAGACTCCTACGGGG 60.757 68.421 0.00 0.00 45.69 5.73
152 3181 2.114625 ACTGGGACCGAGACACGA 59.885 61.111 10.93 0.00 45.77 4.35
183 3212 4.890158 TGATCAGTAGCTGGTCTTTGAA 57.110 40.909 10.28 0.00 41.72 2.69
186 3215 3.739519 GCGATGATCAGTAGCTGGTCTTT 60.740 47.826 10.28 0.00 41.72 2.52
187 3216 2.223923 GCGATGATCAGTAGCTGGTCTT 60.224 50.000 10.28 4.55 41.72 3.01
188 3217 1.339610 GCGATGATCAGTAGCTGGTCT 59.660 52.381 10.28 0.00 41.72 3.85
273 3302 3.244561 CCTGTAGGTTGAGGAGCAAAAGA 60.245 47.826 0.00 0.00 38.44 2.52
293 3322 2.306512 TGGAAACGGTTGCTAATACCCT 59.693 45.455 6.19 0.00 31.75 4.34
386 7661 3.303725 GCTTAACACATGCAAGTCGAACA 60.304 43.478 0.00 0.00 0.00 3.18
413 7688 0.744414 GCTAAGGATGAACGCTGGCA 60.744 55.000 0.00 0.00 0.00 4.92
429 7704 1.063942 TGGAGAGTTCGATCCTGGCTA 60.064 52.381 4.50 0.00 36.50 3.93
570 7845 2.290705 GGTTGGCTATACTGTTGGTGGT 60.291 50.000 0.00 0.00 0.00 4.16
577 7852 3.416414 AGGTAGGGTTGGCTATACTGT 57.584 47.619 0.00 0.00 0.00 3.55
597 7872 3.006940 GCTTGTGGGATTGACGTGATAA 58.993 45.455 0.00 0.00 0.00 1.75
622 7897 2.069273 CGAGCGAATGGGAATGGATAC 58.931 52.381 0.00 0.00 0.00 2.24
782 8057 3.988517 GCCTTAGGATTCGGATTCGTTAG 59.011 47.826 0.69 2.22 37.69 2.34
793 8068 1.341976 TGCCCCTTTGCCTTAGGATTC 60.342 52.381 0.69 0.00 34.56 2.52
794 8069 0.709992 TGCCCCTTTGCCTTAGGATT 59.290 50.000 0.69 0.00 34.56 3.01
795 8070 0.709992 TTGCCCCTTTGCCTTAGGAT 59.290 50.000 0.69 0.00 34.56 3.24
796 8071 0.039618 CTTGCCCCTTTGCCTTAGGA 59.960 55.000 0.69 0.00 34.56 2.94
797 8072 0.039618 TCTTGCCCCTTTGCCTTAGG 59.960 55.000 0.00 0.00 0.00 2.69
798 8073 1.923356 TTCTTGCCCCTTTGCCTTAG 58.077 50.000 0.00 0.00 0.00 2.18
919 8196 2.605823 GGCTCGAATCCATAGTCAGTCG 60.606 54.545 0.00 0.00 0.00 4.18
922 8199 3.583806 GATGGCTCGAATCCATAGTCAG 58.416 50.000 16.24 0.00 43.90 3.51
968 13040 5.885352 TGCTCGATTTAGATTGGGAAAATCA 59.115 36.000 7.54 0.00 38.81 2.57
978 13050 6.599244 TCATGGAAACTTGCTCGATTTAGATT 59.401 34.615 0.00 0.00 35.57 2.40
993 13065 9.393512 CTGAATAAGATCTTCTTCATGGAAACT 57.606 33.333 27.10 0.00 37.89 2.66
1014 13086 7.776969 ACCAGTATCAAATAGAACATGCTGAAT 59.223 33.333 0.00 0.00 0.00 2.57
1031 13103 4.287552 GGGTTCTTCTCCTACCAGTATCA 58.712 47.826 0.00 0.00 33.51 2.15
1139 13212 3.006217 AGCTCCAGTTCCTTCAAAAATGC 59.994 43.478 0.00 0.00 0.00 3.56
1145 13218 4.640771 AATGTAGCTCCAGTTCCTTCAA 57.359 40.909 0.00 0.00 0.00 2.69
1158 13231 9.428097 GAATGGAAATTGAAAAGAAATGTAGCT 57.572 29.630 0.00 0.00 0.00 3.32
1226 13299 8.697507 AGAGAAGTAATTTGTCCTCATGTTTT 57.302 30.769 0.00 0.00 29.54 2.43
1447 13521 1.630223 TGGATTCTGGCAATGCAACA 58.370 45.000 7.79 0.00 0.00 3.33
1475 13549 4.382147 GGAAGAGGAGTGTACCATGAGAAC 60.382 50.000 0.00 0.00 0.00 3.01
1489 13589 0.829990 GGGCTCAGAAGGAAGAGGAG 59.170 60.000 0.00 0.00 32.54 3.69
1500 13600 0.178861 AAGGAGAAAGGGGGCTCAGA 60.179 55.000 0.00 0.00 32.83 3.27
1545 13645 2.479837 GTGATGAACTGTCGACACCAA 58.520 47.619 15.76 0.77 30.94 3.67
1551 13651 1.883926 TCTTCCGTGATGAACTGTCGA 59.116 47.619 0.00 0.00 0.00 4.20
1689 13789 6.424207 CGGGGAAAGTATACAGAAAAGATAGC 59.576 42.308 5.50 0.00 0.00 2.97
1692 13792 5.104485 AGCGGGGAAAGTATACAGAAAAGAT 60.104 40.000 5.50 0.00 0.00 2.40
1715 13816 0.318784 GACCCGCGGTAGCAATAGAG 60.319 60.000 26.12 6.79 45.49 2.43
1795 13896 0.388649 CTTTGGTGAGTCGTCCGAGG 60.389 60.000 0.00 0.00 0.00 4.63
1847 13948 1.295423 TGCGGTTAGGCACTCTTCC 59.705 57.895 0.00 0.00 41.75 3.46
1887 13988 4.021632 CCATCTCACGTGATGATAGGACAT 60.022 45.833 20.40 0.00 44.71 3.06
1888 13989 3.319122 CCATCTCACGTGATGATAGGACA 59.681 47.826 20.40 0.00 44.71 4.02
1889 13990 3.305676 CCCATCTCACGTGATGATAGGAC 60.306 52.174 24.29 0.00 44.71 3.85
1890 13991 2.893489 CCCATCTCACGTGATGATAGGA 59.107 50.000 24.29 16.81 44.71 2.94
1891 13992 2.028658 CCCCATCTCACGTGATGATAGG 60.029 54.545 20.40 22.08 44.71 2.57
1892 13993 2.630098 ACCCCATCTCACGTGATGATAG 59.370 50.000 20.40 15.48 44.71 2.08
1893 13994 2.677914 ACCCCATCTCACGTGATGATA 58.322 47.619 20.40 5.61 44.71 2.15
1894 13995 1.500474 ACCCCATCTCACGTGATGAT 58.500 50.000 20.40 19.36 44.71 2.45
1895 13996 2.031870 CTACCCCATCTCACGTGATGA 58.968 52.381 20.40 18.00 44.71 2.92
1896 13997 1.757118 ACTACCCCATCTCACGTGATG 59.243 52.381 20.40 15.30 42.38 3.07
1897 13998 2.032620 GACTACCCCATCTCACGTGAT 58.967 52.381 20.40 1.42 0.00 3.06
1898 13999 1.272258 TGACTACCCCATCTCACGTGA 60.272 52.381 18.88 18.88 0.00 4.35
1899 14000 1.182667 TGACTACCCCATCTCACGTG 58.817 55.000 9.94 9.94 0.00 4.49
1900 14001 2.032620 GATGACTACCCCATCTCACGT 58.967 52.381 0.00 0.00 37.88 4.49
1901 14002 2.031870 TGATGACTACCCCATCTCACG 58.968 52.381 0.00 0.00 40.65 4.35
1902 14003 4.384056 CATTGATGACTACCCCATCTCAC 58.616 47.826 0.00 0.00 40.65 3.51
1903 14004 3.392285 CCATTGATGACTACCCCATCTCA 59.608 47.826 0.00 0.00 40.65 3.27
1904 14005 3.392616 ACCATTGATGACTACCCCATCTC 59.607 47.826 0.00 0.00 40.65 2.75
1905 14006 3.137176 CACCATTGATGACTACCCCATCT 59.863 47.826 0.00 0.00 40.65 2.90
1906 14007 3.136443 TCACCATTGATGACTACCCCATC 59.864 47.826 0.00 0.00 40.48 3.51
1907 14008 3.122480 TCACCATTGATGACTACCCCAT 58.878 45.455 0.00 0.00 0.00 4.00
1908 14009 2.556766 TCACCATTGATGACTACCCCA 58.443 47.619 0.00 0.00 0.00 4.96
1909 14010 3.279434 GTTCACCATTGATGACTACCCC 58.721 50.000 0.00 0.00 0.00 4.95
1910 14011 3.950397 TGTTCACCATTGATGACTACCC 58.050 45.455 0.00 0.00 0.00 3.69
1911 14012 5.431765 AGATGTTCACCATTGATGACTACC 58.568 41.667 0.00 0.00 32.56 3.18
1912 14013 6.344500 AGAGATGTTCACCATTGATGACTAC 58.656 40.000 0.00 0.00 32.56 2.73
1913 14014 6.550938 AGAGATGTTCACCATTGATGACTA 57.449 37.500 0.00 0.00 32.56 2.59
1914 14015 5.432680 AGAGATGTTCACCATTGATGACT 57.567 39.130 0.00 0.00 32.56 3.41
1915 14016 6.765036 ACATAGAGATGTTCACCATTGATGAC 59.235 38.462 0.00 0.00 44.18 3.06
1916 14017 6.892485 ACATAGAGATGTTCACCATTGATGA 58.108 36.000 0.00 0.00 44.18 2.92
1953 14054 9.740239 CCAAAAGGTTGAACATGAATCATATAG 57.260 33.333 0.00 0.00 36.83 1.31
1954 14055 9.253832 ACCAAAAGGTTGAACATGAATCATATA 57.746 29.630 0.00 0.00 36.83 0.86
1955 14056 8.137745 ACCAAAAGGTTGAACATGAATCATAT 57.862 30.769 0.00 0.00 36.83 1.78
1956 14057 7.451255 AGACCAAAAGGTTGAACATGAATCATA 59.549 33.333 0.00 0.00 36.83 2.15
1957 14058 6.268387 AGACCAAAAGGTTGAACATGAATCAT 59.732 34.615 0.00 0.00 36.83 2.45
1958 14059 5.598005 AGACCAAAAGGTTGAACATGAATCA 59.402 36.000 0.00 0.13 36.83 2.57
1959 14060 6.089249 AGACCAAAAGGTTGAACATGAATC 57.911 37.500 0.00 0.00 36.83 2.52
1960 14061 5.011023 GGAGACCAAAAGGTTGAACATGAAT 59.989 40.000 0.00 0.00 36.83 2.57
1961 14062 4.340950 GGAGACCAAAAGGTTGAACATGAA 59.659 41.667 0.00 0.00 36.83 2.57
1962 14063 3.888930 GGAGACCAAAAGGTTGAACATGA 59.111 43.478 0.00 0.00 36.83 3.07
1963 14064 3.636300 TGGAGACCAAAAGGTTGAACATG 59.364 43.478 0.00 0.00 36.83 3.21
1964 14065 3.891366 CTGGAGACCAAAAGGTTGAACAT 59.109 43.478 0.00 0.00 36.83 2.71
1965 14066 3.287222 CTGGAGACCAAAAGGTTGAACA 58.713 45.455 0.00 0.00 36.83 3.18
1966 14067 3.066760 CACTGGAGACCAAAAGGTTGAAC 59.933 47.826 0.00 0.00 36.83 3.18
1967 14068 3.287222 CACTGGAGACCAAAAGGTTGAA 58.713 45.455 0.00 0.00 36.83 2.69
1968 14069 2.241176 ACACTGGAGACCAAAAGGTTGA 59.759 45.455 0.00 0.00 36.83 3.18
1969 14070 2.654863 ACACTGGAGACCAAAAGGTTG 58.345 47.619 0.00 0.00 30.80 3.77
1970 14071 3.053619 AGAACACTGGAGACCAAAAGGTT 60.054 43.478 0.00 0.00 30.80 3.50
1971 14072 2.509964 AGAACACTGGAGACCAAAAGGT 59.490 45.455 0.00 0.00 30.80 3.50
1972 14073 2.880890 CAGAACACTGGAGACCAAAAGG 59.119 50.000 0.00 0.00 30.80 3.11
1973 14074 3.808728 TCAGAACACTGGAGACCAAAAG 58.191 45.455 0.00 0.00 30.80 2.27
1974 14075 3.433598 CCTCAGAACACTGGAGACCAAAA 60.434 47.826 0.00 0.00 30.80 2.44
1975 14076 2.104792 CCTCAGAACACTGGAGACCAAA 59.895 50.000 0.00 0.00 30.80 3.28
1976 14077 1.694150 CCTCAGAACACTGGAGACCAA 59.306 52.381 0.00 0.00 30.80 3.67
1977 14078 1.342074 CCTCAGAACACTGGAGACCA 58.658 55.000 0.00 0.00 33.04 4.02
1978 14079 0.036858 GCCTCAGAACACTGGAGACC 60.037 60.000 0.00 0.00 33.04 3.85
1979 14080 0.036858 GGCCTCAGAACACTGGAGAC 60.037 60.000 0.00 0.00 33.04 3.36
1980 14081 0.471780 TGGCCTCAGAACACTGGAGA 60.472 55.000 3.32 0.00 33.04 3.71
1981 14082 0.617413 ATGGCCTCAGAACACTGGAG 59.383 55.000 3.32 0.00 33.04 3.86
1982 14083 0.325933 CATGGCCTCAGAACACTGGA 59.674 55.000 3.32 0.00 33.04 3.86
1983 14084 0.037303 ACATGGCCTCAGAACACTGG 59.963 55.000 3.32 0.00 33.04 4.00
1984 14085 1.002888 AGACATGGCCTCAGAACACTG 59.997 52.381 3.32 0.00 0.00 3.66
1985 14086 1.356124 AGACATGGCCTCAGAACACT 58.644 50.000 3.32 0.00 0.00 3.55
1986 14087 3.550437 ATAGACATGGCCTCAGAACAC 57.450 47.619 3.32 0.00 0.00 3.32
1987 14088 4.030216 TGTATAGACATGGCCTCAGAACA 58.970 43.478 3.32 0.00 0.00 3.18
1988 14089 4.672587 TGTATAGACATGGCCTCAGAAC 57.327 45.455 3.32 0.00 0.00 3.01
2000 14101 4.895297 TGATGAGACTGGCATGTATAGACA 59.105 41.667 0.00 0.00 40.72 3.41
2001 14102 5.459536 TGATGAGACTGGCATGTATAGAC 57.540 43.478 0.00 0.00 0.00 2.59
2002 14103 5.600069 ACTTGATGAGACTGGCATGTATAGA 59.400 40.000 0.00 0.00 0.00 1.98
2003 14104 5.851720 ACTTGATGAGACTGGCATGTATAG 58.148 41.667 0.00 0.00 0.00 1.31
2004 14105 5.876651 ACTTGATGAGACTGGCATGTATA 57.123 39.130 0.00 0.00 0.00 1.47
2005 14106 4.767578 ACTTGATGAGACTGGCATGTAT 57.232 40.909 0.00 0.00 0.00 2.29
2006 14107 4.558226 AACTTGATGAGACTGGCATGTA 57.442 40.909 0.00 0.00 0.00 2.29
2007 14108 3.430042 AACTTGATGAGACTGGCATGT 57.570 42.857 0.00 0.00 0.00 3.21
2008 14109 5.392380 GGTTAAACTTGATGAGACTGGCATG 60.392 44.000 0.00 0.00 0.00 4.06
2009 14110 4.702131 GGTTAAACTTGATGAGACTGGCAT 59.298 41.667 0.00 0.00 0.00 4.40
2010 14111 4.072131 GGTTAAACTTGATGAGACTGGCA 58.928 43.478 0.00 0.00 0.00 4.92
2011 14112 3.440522 GGGTTAAACTTGATGAGACTGGC 59.559 47.826 0.00 0.00 0.00 4.85
2012 14113 4.651778 TGGGTTAAACTTGATGAGACTGG 58.348 43.478 0.00 0.00 0.00 4.00
2013 14114 5.765182 ACTTGGGTTAAACTTGATGAGACTG 59.235 40.000 0.00 0.00 0.00 3.51
2014 14115 5.941788 ACTTGGGTTAAACTTGATGAGACT 58.058 37.500 0.00 0.00 0.00 3.24
2015 14116 7.923414 ATACTTGGGTTAAACTTGATGAGAC 57.077 36.000 0.00 0.00 0.00 3.36
2016 14117 8.383175 AGAATACTTGGGTTAAACTTGATGAGA 58.617 33.333 0.00 0.00 0.00 3.27
2017 14118 8.454106 CAGAATACTTGGGTTAAACTTGATGAG 58.546 37.037 0.00 0.00 0.00 2.90
2018 14119 7.094377 GCAGAATACTTGGGTTAAACTTGATGA 60.094 37.037 0.00 0.00 0.00 2.92
2019 14120 7.029563 GCAGAATACTTGGGTTAAACTTGATG 58.970 38.462 0.00 0.00 0.00 3.07
2020 14121 6.719370 TGCAGAATACTTGGGTTAAACTTGAT 59.281 34.615 0.00 0.00 0.00 2.57
2021 14122 6.065374 TGCAGAATACTTGGGTTAAACTTGA 58.935 36.000 0.00 0.00 0.00 3.02
2022 14123 6.325919 TGCAGAATACTTGGGTTAAACTTG 57.674 37.500 0.00 0.00 0.00 3.16
2023 14124 6.493458 ACATGCAGAATACTTGGGTTAAACTT 59.507 34.615 0.00 0.00 0.00 2.66
2024 14125 6.010219 ACATGCAGAATACTTGGGTTAAACT 58.990 36.000 0.00 0.00 0.00 2.66
2025 14126 6.092748 CACATGCAGAATACTTGGGTTAAAC 58.907 40.000 0.00 0.00 0.00 2.01
2026 14127 5.772672 ACACATGCAGAATACTTGGGTTAAA 59.227 36.000 0.00 0.00 0.00 1.52
2027 14128 5.321102 ACACATGCAGAATACTTGGGTTAA 58.679 37.500 0.00 0.00 0.00 2.01
2028 14129 4.917385 ACACATGCAGAATACTTGGGTTA 58.083 39.130 0.00 0.00 0.00 2.85
2029 14130 3.766545 ACACATGCAGAATACTTGGGTT 58.233 40.909 0.00 0.00 0.00 4.11
2030 14131 3.439857 ACACATGCAGAATACTTGGGT 57.560 42.857 0.00 0.00 0.00 4.51
2031 14132 5.895636 TTTACACATGCAGAATACTTGGG 57.104 39.130 0.00 0.00 0.00 4.12
2032 14133 6.803320 CAGTTTTACACATGCAGAATACTTGG 59.197 38.462 0.00 0.00 0.00 3.61
2033 14134 7.362662 ACAGTTTTACACATGCAGAATACTTG 58.637 34.615 0.00 0.00 0.00 3.16
2034 14135 7.308589 GGACAGTTTTACACATGCAGAATACTT 60.309 37.037 0.00 0.00 0.00 2.24
2035 14136 6.149474 GGACAGTTTTACACATGCAGAATACT 59.851 38.462 0.00 0.00 0.00 2.12
2036 14137 6.149474 AGGACAGTTTTACACATGCAGAATAC 59.851 38.462 0.00 0.00 0.00 1.89
2037 14138 6.237901 AGGACAGTTTTACACATGCAGAATA 58.762 36.000 0.00 0.00 0.00 1.75
2038 14139 5.072741 AGGACAGTTTTACACATGCAGAAT 58.927 37.500 0.00 0.00 0.00 2.40
2039 14140 4.460263 AGGACAGTTTTACACATGCAGAA 58.540 39.130 0.00 0.00 0.00 3.02
2040 14141 4.085357 AGGACAGTTTTACACATGCAGA 57.915 40.909 0.00 0.00 0.00 4.26
2041 14142 4.754618 TGTAGGACAGTTTTACACATGCAG 59.245 41.667 0.00 0.00 0.00 4.41
2042 14143 4.513692 GTGTAGGACAGTTTTACACATGCA 59.486 41.667 17.36 0.00 44.01 3.96
2043 14144 4.083484 GGTGTAGGACAGTTTTACACATGC 60.083 45.833 21.06 8.22 45.53 4.06
2044 14145 4.454504 GGGTGTAGGACAGTTTTACACATG 59.545 45.833 21.06 0.00 45.53 3.21
2045 14146 4.648651 GGGTGTAGGACAGTTTTACACAT 58.351 43.478 21.06 0.00 45.53 3.21
2046 14147 3.493002 CGGGTGTAGGACAGTTTTACACA 60.493 47.826 21.06 2.17 45.53 3.72
2047 14148 3.062042 CGGGTGTAGGACAGTTTTACAC 58.938 50.000 15.30 15.30 43.91 2.90
2048 14149 2.699846 ACGGGTGTAGGACAGTTTTACA 59.300 45.455 0.00 0.00 0.00 2.41
2049 14150 3.391506 ACGGGTGTAGGACAGTTTTAC 57.608 47.619 0.00 0.00 0.00 2.01
2050 14151 3.134442 ACAACGGGTGTAGGACAGTTTTA 59.866 43.478 0.00 0.00 39.29 1.52
2051 14152 2.092807 ACAACGGGTGTAGGACAGTTTT 60.093 45.455 0.00 0.00 39.29 2.43
2052 14153 1.487558 ACAACGGGTGTAGGACAGTTT 59.512 47.619 0.00 0.00 39.29 2.66
2053 14154 1.125633 ACAACGGGTGTAGGACAGTT 58.874 50.000 0.00 0.00 39.29 3.16
2054 14155 1.999648 TACAACGGGTGTAGGACAGT 58.000 50.000 0.80 0.00 41.98 3.55
2055 14156 2.232941 ACATACAACGGGTGTAGGACAG 59.767 50.000 23.05 7.62 45.42 3.51
2056 14157 2.028839 CACATACAACGGGTGTAGGACA 60.029 50.000 23.05 0.00 45.42 4.02
2057 14158 2.231964 TCACATACAACGGGTGTAGGAC 59.768 50.000 23.05 0.00 45.42 3.85
2058 14159 2.527497 TCACATACAACGGGTGTAGGA 58.473 47.619 23.05 11.87 45.42 2.94
2059 14160 2.997986 GTTCACATACAACGGGTGTAGG 59.002 50.000 15.62 15.62 45.88 3.18
2060 14161 2.664568 CGTTCACATACAACGGGTGTAG 59.335 50.000 12.02 6.58 45.88 2.74
2061 14162 2.674954 CGTTCACATACAACGGGTGTA 58.325 47.619 8.56 8.56 46.72 2.90
2062 14163 1.504359 CGTTCACATACAACGGGTGT 58.496 50.000 3.29 3.29 42.36 4.16
2068 14169 7.428761 GTGATAGACTCTACGTTCACATACAAC 59.571 40.741 11.21 0.00 34.92 3.32
2069 14170 7.120138 TGTGATAGACTCTACGTTCACATACAA 59.880 37.037 13.55 0.00 38.71 2.41
2070 14171 6.596497 TGTGATAGACTCTACGTTCACATACA 59.404 38.462 13.55 0.00 38.71 2.29
2071 14172 6.906143 GTGTGATAGACTCTACGTTCACATAC 59.094 42.308 17.93 7.95 43.54 2.39
2072 14173 6.037940 GGTGTGATAGACTCTACGTTCACATA 59.962 42.308 17.93 1.48 43.54 2.29
2073 14174 5.163642 GGTGTGATAGACTCTACGTTCACAT 60.164 44.000 17.93 0.00 43.54 3.21
2074 14175 4.155462 GGTGTGATAGACTCTACGTTCACA 59.845 45.833 13.55 13.55 40.64 3.58
2075 14176 4.438472 GGGTGTGATAGACTCTACGTTCAC 60.438 50.000 0.00 9.86 35.27 3.18
2076 14177 3.693085 GGGTGTGATAGACTCTACGTTCA 59.307 47.826 0.00 0.00 0.00 3.18
2077 14178 3.242673 CGGGTGTGATAGACTCTACGTTC 60.243 52.174 0.00 0.00 0.00 3.95
2078 14179 2.681848 CGGGTGTGATAGACTCTACGTT 59.318 50.000 0.00 0.00 0.00 3.99
2079 14180 2.093288 TCGGGTGTGATAGACTCTACGT 60.093 50.000 0.00 0.00 0.00 3.57
2080 14181 2.558378 TCGGGTGTGATAGACTCTACG 58.442 52.381 0.00 0.00 0.00 3.51
2081 14182 4.135306 TGATCGGGTGTGATAGACTCTAC 58.865 47.826 0.00 0.00 0.00 2.59
2082 14183 4.432980 TGATCGGGTGTGATAGACTCTA 57.567 45.455 0.00 0.00 0.00 2.43
2083 14184 3.298686 TGATCGGGTGTGATAGACTCT 57.701 47.619 0.00 0.00 0.00 3.24
2084 14185 3.570125 TGATGATCGGGTGTGATAGACTC 59.430 47.826 0.00 0.00 0.00 3.36
2085 14186 3.319405 GTGATGATCGGGTGTGATAGACT 59.681 47.826 0.00 0.00 0.00 3.24
2086 14187 3.643763 GTGATGATCGGGTGTGATAGAC 58.356 50.000 0.00 0.00 0.00 2.59
2087 14188 2.293399 CGTGATGATCGGGTGTGATAGA 59.707 50.000 0.00 0.00 0.00 1.98
2088 14189 2.034685 ACGTGATGATCGGGTGTGATAG 59.965 50.000 0.00 0.00 0.00 2.08
2089 14190 2.028876 ACGTGATGATCGGGTGTGATA 58.971 47.619 0.00 0.00 0.00 2.15
2090 14191 0.824109 ACGTGATGATCGGGTGTGAT 59.176 50.000 0.00 0.00 0.00 3.06
2091 14192 0.108851 CACGTGATGATCGGGTGTGA 60.109 55.000 10.90 0.00 0.00 3.58
2092 14193 1.083806 CCACGTGATGATCGGGTGTG 61.084 60.000 19.30 6.94 0.00 3.82
2093 14194 1.218047 CCACGTGATGATCGGGTGT 59.782 57.895 19.30 0.00 0.00 4.16
2094 14195 1.083806 CACCACGTGATGATCGGGTG 61.084 60.000 19.30 10.19 40.29 4.61
2095 14196 1.218047 CACCACGTGATGATCGGGT 59.782 57.895 19.30 0.00 35.23 5.28
2096 14197 0.806102 GACACCACGTGATGATCGGG 60.806 60.000 19.08 1.85 36.96 5.14
2097 14198 0.173481 AGACACCACGTGATGATCGG 59.827 55.000 19.08 0.00 36.96 4.18
2098 14199 1.550065 GAGACACCACGTGATGATCG 58.450 55.000 19.08 0.58 36.96 3.69
2099 14200 1.132453 TCGAGACACCACGTGATGATC 59.868 52.381 19.08 13.01 36.96 2.92
2100 14201 1.173913 TCGAGACACCACGTGATGAT 58.826 50.000 19.08 4.23 36.96 2.45
2101 14202 0.955905 TTCGAGACACCACGTGATGA 59.044 50.000 19.08 0.63 36.96 2.92
2102 14203 1.455786 GTTTCGAGACACCACGTGATG 59.544 52.381 19.30 14.17 36.96 3.07
2103 14204 1.067974 TGTTTCGAGACACCACGTGAT 59.932 47.619 19.30 0.00 36.96 3.06
2104 14205 0.456628 TGTTTCGAGACACCACGTGA 59.543 50.000 19.30 0.00 36.96 4.35
2105 14206 1.282817 TTGTTTCGAGACACCACGTG 58.717 50.000 8.51 9.08 39.75 4.49
2106 14207 1.931172 CTTTGTTTCGAGACACCACGT 59.069 47.619 8.51 0.00 0.00 4.49
2107 14208 2.198406 TCTTTGTTTCGAGACACCACG 58.802 47.619 8.51 0.00 0.00 4.94
2108 14209 3.621715 AGTTCTTTGTTTCGAGACACCAC 59.378 43.478 8.51 3.54 0.00 4.16
2109 14210 3.869065 AGTTCTTTGTTTCGAGACACCA 58.131 40.909 8.51 0.00 0.00 4.17
2110 14211 6.183360 GCTATAGTTCTTTGTTTCGAGACACC 60.183 42.308 8.51 0.00 0.00 4.16
2111 14212 6.365247 TGCTATAGTTCTTTGTTTCGAGACAC 59.635 38.462 8.51 0.00 0.00 3.67
2112 14213 6.452242 TGCTATAGTTCTTTGTTTCGAGACA 58.548 36.000 4.39 4.39 0.00 3.41
2113 14214 6.946229 TGCTATAGTTCTTTGTTTCGAGAC 57.054 37.500 0.84 0.00 0.00 3.36
2114 14215 7.064609 CCATTGCTATAGTTCTTTGTTTCGAGA 59.935 37.037 0.84 0.00 0.00 4.04
2115 14216 7.148407 ACCATTGCTATAGTTCTTTGTTTCGAG 60.148 37.037 0.84 0.00 0.00 4.04
2116 14217 6.653320 ACCATTGCTATAGTTCTTTGTTTCGA 59.347 34.615 0.84 0.00 0.00 3.71
2117 14218 6.742718 CACCATTGCTATAGTTCTTTGTTTCG 59.257 38.462 0.84 0.00 0.00 3.46
2118 14219 6.528072 GCACCATTGCTATAGTTCTTTGTTTC 59.472 38.462 0.84 0.00 46.17 2.78
2119 14220 6.389906 GCACCATTGCTATAGTTCTTTGTTT 58.610 36.000 0.84 0.00 46.17 2.83
2120 14221 5.954335 GCACCATTGCTATAGTTCTTTGTT 58.046 37.500 0.84 0.00 46.17 2.83
2121 14222 5.567138 GCACCATTGCTATAGTTCTTTGT 57.433 39.130 0.84 0.00 46.17 2.83
2135 14236 2.171237 TCTCCCTGAGTATGCACCATTG 59.829 50.000 0.00 0.00 0.00 2.82
2136 14237 2.481441 TCTCCCTGAGTATGCACCATT 58.519 47.619 0.00 0.00 0.00 3.16
2137 14238 2.171448 GTTCTCCCTGAGTATGCACCAT 59.829 50.000 0.00 0.00 0.00 3.55
2138 14239 1.555075 GTTCTCCCTGAGTATGCACCA 59.445 52.381 0.00 0.00 0.00 4.17
2139 14240 1.555075 TGTTCTCCCTGAGTATGCACC 59.445 52.381 0.00 0.00 0.00 5.01
2140 14241 2.234908 AGTGTTCTCCCTGAGTATGCAC 59.765 50.000 0.00 0.00 0.00 4.57
2141 14242 2.540383 AGTGTTCTCCCTGAGTATGCA 58.460 47.619 0.00 0.00 0.00 3.96
2142 14243 3.618690 AAGTGTTCTCCCTGAGTATGC 57.381 47.619 0.00 0.00 0.00 3.14
2143 14244 5.875359 GGTAAAAGTGTTCTCCCTGAGTATG 59.125 44.000 0.00 0.00 0.00 2.39
2144 14245 5.785940 AGGTAAAAGTGTTCTCCCTGAGTAT 59.214 40.000 0.00 0.00 0.00 2.12
2145 14246 5.152934 AGGTAAAAGTGTTCTCCCTGAGTA 58.847 41.667 0.00 0.00 0.00 2.59
2146 14247 3.974642 AGGTAAAAGTGTTCTCCCTGAGT 59.025 43.478 0.00 0.00 0.00 3.41
2147 14248 4.625607 AGGTAAAAGTGTTCTCCCTGAG 57.374 45.455 0.00 0.00 0.00 3.35
2148 14249 4.410883 TCAAGGTAAAAGTGTTCTCCCTGA 59.589 41.667 0.00 0.00 0.00 3.86
2149 14250 4.714632 TCAAGGTAAAAGTGTTCTCCCTG 58.285 43.478 0.00 0.00 0.00 4.45
2150 14251 5.382664 TTCAAGGTAAAAGTGTTCTCCCT 57.617 39.130 0.00 0.00 0.00 4.20
2151 14252 6.650427 ATTTCAAGGTAAAAGTGTTCTCCC 57.350 37.500 0.00 0.00 0.00 4.30
2152 14253 9.678941 CTAAATTTCAAGGTAAAAGTGTTCTCC 57.321 33.333 0.00 0.00 0.00 3.71
2158 14259 9.463443 CCTTCACTAAATTTCAAGGTAAAAGTG 57.537 33.333 0.00 0.00 30.90 3.16
2159 14260 8.638873 CCCTTCACTAAATTTCAAGGTAAAAGT 58.361 33.333 13.23 0.00 33.04 2.66
2160 14261 8.856103 TCCCTTCACTAAATTTCAAGGTAAAAG 58.144 33.333 13.23 8.03 33.04 2.27
2161 14262 8.770010 TCCCTTCACTAAATTTCAAGGTAAAA 57.230 30.769 13.23 0.00 33.04 1.52
2162 14263 8.950007 ATCCCTTCACTAAATTTCAAGGTAAA 57.050 30.769 13.23 0.00 33.04 2.01
2163 14264 8.167392 TGATCCCTTCACTAAATTTCAAGGTAA 58.833 33.333 13.23 5.72 33.04 2.85
2164 14265 7.695055 TGATCCCTTCACTAAATTTCAAGGTA 58.305 34.615 13.23 3.21 33.04 3.08
2165 14266 6.552008 TGATCCCTTCACTAAATTTCAAGGT 58.448 36.000 13.23 0.97 33.04 3.50
2166 14267 7.559170 AGATGATCCCTTCACTAAATTTCAAGG 59.441 37.037 0.00 2.85 37.11 3.61
2167 14268 8.517062 AGATGATCCCTTCACTAAATTTCAAG 57.483 34.615 0.00 0.00 37.11 3.02
2168 14269 8.884124 AAGATGATCCCTTCACTAAATTTCAA 57.116 30.769 0.00 0.00 37.11 2.69
2174 14275 9.507329 GCATTATAAGATGATCCCTTCACTAAA 57.493 33.333 1.31 0.00 37.11 1.85
2175 14276 8.884323 AGCATTATAAGATGATCCCTTCACTAA 58.116 33.333 1.31 1.17 37.11 2.24
2176 14277 8.441311 AGCATTATAAGATGATCCCTTCACTA 57.559 34.615 1.31 0.00 37.11 2.74
2177 14278 7.327064 AGCATTATAAGATGATCCCTTCACT 57.673 36.000 1.31 0.00 37.11 3.41
2178 14279 7.550906 GGTAGCATTATAAGATGATCCCTTCAC 59.449 40.741 1.31 0.00 37.11 3.18
2179 14280 7.579531 CGGTAGCATTATAAGATGATCCCTTCA 60.580 40.741 1.31 0.00 39.12 3.02
2180 14281 6.758886 CGGTAGCATTATAAGATGATCCCTTC 59.241 42.308 1.31 0.00 0.00 3.46
2181 14282 6.213600 ACGGTAGCATTATAAGATGATCCCTT 59.786 38.462 0.00 0.00 0.00 3.95
2182 14283 5.721960 ACGGTAGCATTATAAGATGATCCCT 59.278 40.000 0.00 0.00 0.00 4.20
2183 14284 5.978814 ACGGTAGCATTATAAGATGATCCC 58.021 41.667 0.00 0.00 0.00 3.85
2184 14285 5.744345 CGACGGTAGCATTATAAGATGATCC 59.256 44.000 0.00 0.00 0.00 3.36
2185 14286 6.323266 ACGACGGTAGCATTATAAGATGATC 58.677 40.000 0.00 0.00 0.00 2.92
2186 14287 6.268825 ACGACGGTAGCATTATAAGATGAT 57.731 37.500 0.00 0.00 0.00 2.45
2187 14288 5.700722 ACGACGGTAGCATTATAAGATGA 57.299 39.130 0.00 0.00 0.00 2.92
2188 14289 6.150318 AGAACGACGGTAGCATTATAAGATG 58.850 40.000 0.00 0.00 0.00 2.90
2189 14290 6.328641 AGAACGACGGTAGCATTATAAGAT 57.671 37.500 0.00 0.00 0.00 2.40
2190 14291 5.762825 AGAACGACGGTAGCATTATAAGA 57.237 39.130 0.00 0.00 0.00 2.10
2191 14292 6.087820 GCTTAGAACGACGGTAGCATTATAAG 59.912 42.308 1.30 3.22 0.00 1.73
2192 14293 5.916883 GCTTAGAACGACGGTAGCATTATAA 59.083 40.000 1.30 0.00 0.00 0.98
2193 14294 5.008911 TGCTTAGAACGACGGTAGCATTATA 59.991 40.000 4.75 0.00 34.05 0.98
2194 14295 4.202080 TGCTTAGAACGACGGTAGCATTAT 60.202 41.667 4.75 0.00 34.05 1.28
2195 14296 3.129113 TGCTTAGAACGACGGTAGCATTA 59.871 43.478 4.75 0.00 34.05 1.90
2196 14297 2.094390 TGCTTAGAACGACGGTAGCATT 60.094 45.455 4.75 0.00 34.05 3.56
2197 14298 1.475280 TGCTTAGAACGACGGTAGCAT 59.525 47.619 4.75 0.00 34.05 3.79
2198 14299 0.883153 TGCTTAGAACGACGGTAGCA 59.117 50.000 4.75 4.75 36.38 3.49
2199 14300 1.986698 TTGCTTAGAACGACGGTAGC 58.013 50.000 0.00 0.00 0.00 3.58
2200 14301 6.529125 TCTTATTTTGCTTAGAACGACGGTAG 59.471 38.462 0.00 0.00 0.00 3.18
2201 14302 6.389091 TCTTATTTTGCTTAGAACGACGGTA 58.611 36.000 0.00 0.00 0.00 4.02
2202 14303 5.232463 TCTTATTTTGCTTAGAACGACGGT 58.768 37.500 0.00 0.00 0.00 4.83
2203 14304 5.773239 TCTTATTTTGCTTAGAACGACGG 57.227 39.130 0.00 0.00 0.00 4.79
2204 14305 5.672856 GCATCTTATTTTGCTTAGAACGACG 59.327 40.000 0.00 0.00 35.95 5.12
2205 14306 6.542852 TGCATCTTATTTTGCTTAGAACGAC 58.457 36.000 0.00 0.00 39.60 4.34
2206 14307 6.735678 TGCATCTTATTTTGCTTAGAACGA 57.264 33.333 0.00 0.00 39.60 3.85
2207 14308 9.502145 TTTATGCATCTTATTTTGCTTAGAACG 57.498 29.630 0.19 0.00 39.60 3.95
2223 14324 9.961265 CATGTGATGTTTATCTTTTATGCATCT 57.039 29.630 0.19 0.00 34.22 2.90
2224 14325 8.697067 GCATGTGATGTTTATCTTTTATGCATC 58.303 33.333 0.19 0.00 36.72 3.91
2225 14326 8.198778 TGCATGTGATGTTTATCTTTTATGCAT 58.801 29.630 3.79 3.79 38.82 3.96
2226 14327 7.545489 TGCATGTGATGTTTATCTTTTATGCA 58.455 30.769 0.00 0.00 39.88 3.96
2227 14328 7.990541 TGCATGTGATGTTTATCTTTTATGC 57.009 32.000 0.00 0.00 36.94 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.