Multiple sequence alignment - TraesCS6A01G250500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G250500 chr6A 100.000 7333 0 0 1 7333 464686211 464693543 0.000000e+00 13542.0
1 TraesCS6A01G250500 chr6A 86.325 351 45 1 4163 4513 12367199 12367546 5.370000e-101 379.0
2 TraesCS6A01G250500 chr3A 99.371 2227 13 1 5107 7333 534174506 534176731 0.000000e+00 4034.0
3 TraesCS6A01G250500 chr3A 86.634 606 56 9 3997 4593 648104801 648104212 0.000000e+00 647.0
4 TraesCS6A01G250500 chr2A 99.281 2224 15 1 5111 7333 52550673 52552896 0.000000e+00 4017.0
5 TraesCS6A01G250500 chr2A 86.926 849 111 0 3737 4585 671711627 671712475 0.000000e+00 953.0
6 TraesCS6A01G250500 chr2A 88.361 610 62 3 3991 4592 535217479 535218087 0.000000e+00 725.0
7 TraesCS6A01G250500 chr2A 82.075 106 17 2 2971 3075 671704339 671704443 1.010000e-13 89.8
8 TraesCS6A01G250500 chr2D 97.340 2218 47 4 5114 7330 178350489 178352695 0.000000e+00 3759.0
9 TraesCS6A01G250500 chr2D 87.279 849 108 0 3737 4585 526526017 526526865 0.000000e+00 970.0
10 TraesCS6A01G250500 chr2D 86.076 79 11 0 2997 3075 526516484 526516562 1.310000e-12 86.1
11 TraesCS6A01G250500 chr6B 91.852 2295 112 33 386 2649 496991207 496988957 0.000000e+00 3133.0
12 TraesCS6A01G250500 chr6B 93.621 1646 60 10 3484 5114 496987815 496986200 0.000000e+00 2416.0
13 TraesCS6A01G250500 chr6B 95.643 459 15 3 2648 3102 496988875 496988418 0.000000e+00 732.0
14 TraesCS6A01G250500 chr6B 91.944 360 6 4 3083 3441 496988250 496987913 3.980000e-132 483.0
15 TraesCS6A01G250500 chr6D 94.786 1611 48 12 3482 5076 325820162 325821752 0.000000e+00 2477.0
16 TraesCS6A01G250500 chr6D 91.466 1746 98 26 269 2004 325816929 325818633 0.000000e+00 2351.0
17 TraesCS6A01G250500 chr6D 94.118 1377 37 12 2071 3441 325818727 325820065 0.000000e+00 2054.0
18 TraesCS6A01G250500 chr6D 87.731 432 52 1 4163 4594 10809846 10810276 3.050000e-138 503.0
19 TraesCS6A01G250500 chr2B 87.044 849 110 0 3737 4585 622921834 622922682 0.000000e+00 959.0
20 TraesCS6A01G250500 chr2B 85.281 462 60 4 3847 4308 572268592 572269045 3.100000e-128 470.0
21 TraesCS6A01G250500 chr2B 83.871 93 15 0 2983 3075 622914346 622914438 1.010000e-13 89.8
22 TraesCS6A01G250500 chr5B 87.740 416 40 4 4170 4574 690230996 690230581 6.660000e-130 475.0
23 TraesCS6A01G250500 chr5B 87.209 344 38 1 3984 4321 579515395 579515052 3.210000e-103 387.0
24 TraesCS6A01G250500 chr5B 95.556 45 2 0 6157 6201 440187398 440187442 1.020000e-08 73.1
25 TraesCS6A01G250500 chr1B 85.459 392 50 3 3918 4308 625757055 625757440 1.150000e-107 401.0
26 TraesCS6A01G250500 chr1B 93.443 61 4 0 3846 3906 625723654 625723714 2.820000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G250500 chr6A 464686211 464693543 7332 False 13542 13542 100.000000 1 7333 1 chr6A.!!$F2 7332
1 TraesCS6A01G250500 chr3A 534174506 534176731 2225 False 4034 4034 99.371000 5107 7333 1 chr3A.!!$F1 2226
2 TraesCS6A01G250500 chr3A 648104212 648104801 589 True 647 647 86.634000 3997 4593 1 chr3A.!!$R1 596
3 TraesCS6A01G250500 chr2A 52550673 52552896 2223 False 4017 4017 99.281000 5111 7333 1 chr2A.!!$F1 2222
4 TraesCS6A01G250500 chr2A 671711627 671712475 848 False 953 953 86.926000 3737 4585 1 chr2A.!!$F4 848
5 TraesCS6A01G250500 chr2A 535217479 535218087 608 False 725 725 88.361000 3991 4592 1 chr2A.!!$F2 601
6 TraesCS6A01G250500 chr2D 178350489 178352695 2206 False 3759 3759 97.340000 5114 7330 1 chr2D.!!$F1 2216
7 TraesCS6A01G250500 chr2D 526526017 526526865 848 False 970 970 87.279000 3737 4585 1 chr2D.!!$F3 848
8 TraesCS6A01G250500 chr6B 496986200 496991207 5007 True 1691 3133 93.265000 386 5114 4 chr6B.!!$R1 4728
9 TraesCS6A01G250500 chr6D 325816929 325821752 4823 False 2294 2477 93.456667 269 5076 3 chr6D.!!$F2 4807
10 TraesCS6A01G250500 chr2B 622921834 622922682 848 False 959 959 87.044000 3737 4585 1 chr2B.!!$F3 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.107410 AAATGGGCATGGCATTGCAG 60.107 50.0 22.06 0.82 44.59 4.41 F
146 147 0.318107 GCATTGCAGTCGTGTGCTTT 60.318 50.0 3.15 0.00 44.32 3.51 F
149 150 0.376852 TTGCAGTCGTGTGCTTTCAC 59.623 50.0 11.96 0.00 44.32 3.18 F
1761 1802 0.395724 GCCATCGATTGAAACCCCCT 60.396 55.0 0.00 0.00 0.00 4.79 F
3360 3734 0.103208 GTAGGACATCACAGGCCTCG 59.897 60.0 0.00 0.52 32.04 4.63 F
3370 3744 0.178068 ACAGGCCTCGCGATTTACAT 59.822 50.0 10.36 0.00 0.00 2.29 F
3372 3746 0.249911 AGGCCTCGCGATTTACATCC 60.250 55.0 10.36 3.32 0.00 3.51 F
5742 6204 0.250252 TGTGCTTCATGCTCACCGAA 60.250 50.0 8.59 0.00 39.83 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1781 1.474330 GGGGTTTCAATCGATGGCTT 58.526 50.000 0.00 0.0 0.00 4.35 R
1837 1878 3.322828 GCGGATCCTAACACCCTATAACA 59.677 47.826 10.75 0.0 0.00 2.41 R
1977 2018 4.627611 ATGAGTATGTCACATTTGCTGC 57.372 40.909 0.00 0.0 38.28 5.25 R
3459 3864 0.541863 ACACGATCAAGGATCCCCAC 59.458 55.000 8.55 0.0 35.83 4.61 R
4985 5436 0.238553 GAACGCCTTTCTGCAAGTCC 59.761 55.000 0.00 0.0 33.76 3.85 R
5104 5566 1.014804 AGTTGGCCCCCATTTATCCA 58.985 50.000 0.00 0.0 31.53 3.41 R
5896 6358 0.811281 GAAGGCTTTAGGCGCATTGT 59.189 50.000 10.83 0.0 46.23 2.71 R
6647 7109 5.587443 ACCACTGTAACCTTTGTTGTACTTC 59.413 40.000 0.00 0.0 35.87 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.449251 TTTTTCTTTTCCCAAGGATTCATTTG 57.551 30.769 0.00 0.00 0.00 2.32
48 49 6.745794 TTCTTTTCCCAAGGATTCATTTGT 57.254 33.333 0.00 0.00 0.00 2.83
49 50 7.847711 TTCTTTTCCCAAGGATTCATTTGTA 57.152 32.000 0.00 0.00 0.00 2.41
50 51 7.227049 TCTTTTCCCAAGGATTCATTTGTAC 57.773 36.000 0.00 0.00 0.00 2.90
51 52 5.993748 TTTCCCAAGGATTCATTTGTACC 57.006 39.130 0.00 0.00 0.00 3.34
52 53 4.666412 TCCCAAGGATTCATTTGTACCA 57.334 40.909 0.00 0.00 0.00 3.25
53 54 4.599041 TCCCAAGGATTCATTTGTACCAG 58.401 43.478 0.00 0.00 0.00 4.00
54 55 4.290985 TCCCAAGGATTCATTTGTACCAGA 59.709 41.667 0.00 0.00 0.00 3.86
55 56 4.641989 CCCAAGGATTCATTTGTACCAGAG 59.358 45.833 0.00 0.00 0.00 3.35
56 57 5.256474 CCAAGGATTCATTTGTACCAGAGT 58.744 41.667 0.00 0.00 0.00 3.24
57 58 5.124457 CCAAGGATTCATTTGTACCAGAGTG 59.876 44.000 0.00 0.00 0.00 3.51
58 59 5.505181 AGGATTCATTTGTACCAGAGTGT 57.495 39.130 0.00 0.00 0.00 3.55
59 60 5.880901 AGGATTCATTTGTACCAGAGTGTT 58.119 37.500 0.00 0.00 0.00 3.32
60 61 6.306987 AGGATTCATTTGTACCAGAGTGTTT 58.693 36.000 0.00 0.00 0.00 2.83
61 62 6.431234 AGGATTCATTTGTACCAGAGTGTTTC 59.569 38.462 0.00 0.00 0.00 2.78
62 63 6.206634 GGATTCATTTGTACCAGAGTGTTTCA 59.793 38.462 0.00 0.00 0.00 2.69
63 64 7.094205 GGATTCATTTGTACCAGAGTGTTTCAT 60.094 37.037 0.00 0.00 0.00 2.57
64 65 8.862325 ATTCATTTGTACCAGAGTGTTTCATA 57.138 30.769 0.00 0.00 0.00 2.15
65 66 7.905604 TCATTTGTACCAGAGTGTTTCATAG 57.094 36.000 0.00 0.00 0.00 2.23
66 67 7.676004 TCATTTGTACCAGAGTGTTTCATAGA 58.324 34.615 0.00 0.00 0.00 1.98
67 68 8.154203 TCATTTGTACCAGAGTGTTTCATAGAA 58.846 33.333 0.00 0.00 0.00 2.10
68 69 8.783093 CATTTGTACCAGAGTGTTTCATAGAAA 58.217 33.333 0.00 0.00 0.00 2.52
69 70 7.962964 TTGTACCAGAGTGTTTCATAGAAAG 57.037 36.000 0.00 0.00 0.00 2.62
70 71 5.932303 TGTACCAGAGTGTTTCATAGAAAGC 59.068 40.000 0.00 0.00 0.00 3.51
71 72 5.234466 ACCAGAGTGTTTCATAGAAAGCT 57.766 39.130 0.00 0.00 0.00 3.74
72 73 5.625150 ACCAGAGTGTTTCATAGAAAGCTT 58.375 37.500 0.00 0.00 0.00 3.74
73 74 6.769512 ACCAGAGTGTTTCATAGAAAGCTTA 58.230 36.000 0.00 0.00 0.00 3.09
74 75 6.876257 ACCAGAGTGTTTCATAGAAAGCTTAG 59.124 38.462 0.00 0.00 0.00 2.18
75 76 6.183360 CCAGAGTGTTTCATAGAAAGCTTAGC 60.183 42.308 0.00 0.00 0.00 3.09
76 77 6.369890 CAGAGTGTTTCATAGAAAGCTTAGCA 59.630 38.462 7.07 0.00 0.00 3.49
77 78 7.065563 CAGAGTGTTTCATAGAAAGCTTAGCAT 59.934 37.037 7.07 0.00 0.00 3.79
78 79 7.279758 AGAGTGTTTCATAGAAAGCTTAGCATC 59.720 37.037 7.07 4.39 0.00 3.91
79 80 6.317391 AGTGTTTCATAGAAAGCTTAGCATCC 59.683 38.462 7.07 0.00 0.00 3.51
80 81 6.094048 GTGTTTCATAGAAAGCTTAGCATCCA 59.906 38.462 7.07 0.00 0.00 3.41
81 82 6.658816 TGTTTCATAGAAAGCTTAGCATCCAA 59.341 34.615 7.07 0.00 0.00 3.53
82 83 7.340232 TGTTTCATAGAAAGCTTAGCATCCAAT 59.660 33.333 7.07 0.00 0.00 3.16
83 84 7.502120 TTCATAGAAAGCTTAGCATCCAATC 57.498 36.000 7.07 0.00 0.00 2.67
84 85 6.594744 TCATAGAAAGCTTAGCATCCAATCA 58.405 36.000 7.07 0.00 0.00 2.57
85 86 7.056006 TCATAGAAAGCTTAGCATCCAATCAA 58.944 34.615 7.07 0.00 0.00 2.57
86 87 7.557358 TCATAGAAAGCTTAGCATCCAATCAAA 59.443 33.333 7.07 0.00 0.00 2.69
87 88 6.594788 AGAAAGCTTAGCATCCAATCAAAA 57.405 33.333 7.07 0.00 0.00 2.44
88 89 6.393171 AGAAAGCTTAGCATCCAATCAAAAC 58.607 36.000 7.07 0.00 0.00 2.43
89 90 4.725790 AGCTTAGCATCCAATCAAAACC 57.274 40.909 7.07 0.00 0.00 3.27
90 91 4.347607 AGCTTAGCATCCAATCAAAACCT 58.652 39.130 7.07 0.00 0.00 3.50
91 92 4.400567 AGCTTAGCATCCAATCAAAACCTC 59.599 41.667 7.07 0.00 0.00 3.85
92 93 4.731773 GCTTAGCATCCAATCAAAACCTCG 60.732 45.833 0.00 0.00 0.00 4.63
93 94 3.071874 AGCATCCAATCAAAACCTCGA 57.928 42.857 0.00 0.00 0.00 4.04
94 95 2.749621 AGCATCCAATCAAAACCTCGAC 59.250 45.455 0.00 0.00 0.00 4.20
95 96 2.476185 GCATCCAATCAAAACCTCGACG 60.476 50.000 0.00 0.00 0.00 5.12
96 97 2.823924 TCCAATCAAAACCTCGACGA 57.176 45.000 0.00 0.00 0.00 4.20
97 98 3.114668 TCCAATCAAAACCTCGACGAA 57.885 42.857 0.00 0.00 0.00 3.85
98 99 2.803956 TCCAATCAAAACCTCGACGAAC 59.196 45.455 0.00 0.00 0.00 3.95
99 100 2.546368 CCAATCAAAACCTCGACGAACA 59.454 45.455 0.00 0.00 0.00 3.18
100 101 3.002862 CCAATCAAAACCTCGACGAACAA 59.997 43.478 0.00 0.00 0.00 2.83
101 102 4.496673 CCAATCAAAACCTCGACGAACAAA 60.497 41.667 0.00 0.00 0.00 2.83
102 103 4.886247 ATCAAAACCTCGACGAACAAAA 57.114 36.364 0.00 0.00 0.00 2.44
103 104 4.886247 TCAAAACCTCGACGAACAAAAT 57.114 36.364 0.00 0.00 0.00 1.82
104 105 5.238006 TCAAAACCTCGACGAACAAAATT 57.762 34.783 0.00 0.00 0.00 1.82
105 106 5.642686 TCAAAACCTCGACGAACAAAATTT 58.357 33.333 0.00 0.00 0.00 1.82
106 107 5.740099 TCAAAACCTCGACGAACAAAATTTC 59.260 36.000 0.00 0.00 0.00 2.17
107 108 3.891056 ACCTCGACGAACAAAATTTCC 57.109 42.857 0.00 0.00 0.00 3.13
108 109 2.222445 ACCTCGACGAACAAAATTTCCG 59.778 45.455 0.00 0.00 0.00 4.30
109 110 2.222445 CCTCGACGAACAAAATTTCCGT 59.778 45.455 0.00 7.33 0.00 4.69
110 111 3.429543 CCTCGACGAACAAAATTTCCGTA 59.570 43.478 0.00 0.00 0.00 4.02
111 112 4.084433 CCTCGACGAACAAAATTTCCGTAA 60.084 41.667 0.00 0.00 0.00 3.18
112 113 5.401033 TCGACGAACAAAATTTCCGTAAA 57.599 34.783 0.00 0.00 0.00 2.01
113 114 5.988092 TCGACGAACAAAATTTCCGTAAAT 58.012 33.333 0.00 0.00 36.87 1.40
114 115 6.428799 TCGACGAACAAAATTTCCGTAAATT 58.571 32.000 0.00 0.00 45.20 1.82
115 116 6.574462 TCGACGAACAAAATTTCCGTAAATTC 59.426 34.615 0.00 0.00 43.04 2.17
116 117 6.357503 CGACGAACAAAATTTCCGTAAATTCA 59.642 34.615 0.00 0.00 43.04 2.57
117 118 7.096966 CGACGAACAAAATTTCCGTAAATTCAA 60.097 33.333 0.00 0.00 43.04 2.69
118 119 8.408743 ACGAACAAAATTTCCGTAAATTCAAA 57.591 26.923 0.00 0.00 43.04 2.69
119 120 9.036671 ACGAACAAAATTTCCGTAAATTCAAAT 57.963 25.926 0.00 0.00 43.04 2.32
120 121 9.300441 CGAACAAAATTTCCGTAAATTCAAATG 57.700 29.630 0.00 0.84 43.04 2.32
121 122 9.592720 GAACAAAATTTCCGTAAATTCAAATGG 57.407 29.630 0.00 0.00 43.04 3.16
122 123 8.093659 ACAAAATTTCCGTAAATTCAAATGGG 57.906 30.769 0.00 0.00 43.04 4.00
123 124 6.735678 AAATTTCCGTAAATTCAAATGGGC 57.264 33.333 0.00 0.00 43.04 5.36
124 125 4.873746 TTTCCGTAAATTCAAATGGGCA 57.126 36.364 0.00 0.00 0.00 5.36
125 126 5.413309 TTTCCGTAAATTCAAATGGGCAT 57.587 34.783 0.00 0.00 0.00 4.40
126 127 4.383850 TCCGTAAATTCAAATGGGCATG 57.616 40.909 0.00 0.00 0.00 4.06
127 128 3.131933 TCCGTAAATTCAAATGGGCATGG 59.868 43.478 0.00 0.00 0.00 3.66
128 129 2.865551 CGTAAATTCAAATGGGCATGGC 59.134 45.455 11.56 11.56 0.00 4.40
129 130 3.678252 CGTAAATTCAAATGGGCATGGCA 60.678 43.478 22.06 7.72 0.00 4.92
130 131 3.655615 AAATTCAAATGGGCATGGCAT 57.344 38.095 22.06 9.77 0.00 4.40
131 132 3.655615 AATTCAAATGGGCATGGCATT 57.344 38.095 22.06 14.98 0.00 3.56
132 133 2.404923 TTCAAATGGGCATGGCATTG 57.595 45.000 22.06 20.32 0.00 2.82
133 134 0.107606 TCAAATGGGCATGGCATTGC 60.108 50.000 22.06 5.27 42.01 3.56
134 135 0.393132 CAAATGGGCATGGCATTGCA 60.393 50.000 22.06 9.99 44.59 4.08
135 136 0.107410 AAATGGGCATGGCATTGCAG 60.107 50.000 22.06 0.82 44.59 4.41
136 137 1.268992 AATGGGCATGGCATTGCAGT 61.269 50.000 22.06 5.98 44.59 4.40
137 138 1.682451 ATGGGCATGGCATTGCAGTC 61.682 55.000 22.06 1.10 44.59 3.51
138 139 2.103538 GGCATGGCATTGCAGTCG 59.896 61.111 15.47 0.00 44.59 4.18
139 140 2.703798 GGCATGGCATTGCAGTCGT 61.704 57.895 15.47 0.00 44.59 4.34
140 141 1.515519 GCATGGCATTGCAGTCGTG 60.516 57.895 11.39 6.14 42.31 4.35
141 142 1.878070 CATGGCATTGCAGTCGTGT 59.122 52.632 11.39 0.00 0.00 4.49
142 143 0.455464 CATGGCATTGCAGTCGTGTG 60.455 55.000 11.39 0.00 0.00 3.82
143 144 2.126734 GGCATTGCAGTCGTGTGC 60.127 61.111 11.39 5.00 44.27 4.57
144 145 2.620112 GGCATTGCAGTCGTGTGCT 61.620 57.895 11.39 0.00 44.32 4.40
145 146 1.283793 GCATTGCAGTCGTGTGCTT 59.716 52.632 3.15 0.00 44.32 3.91
146 147 0.318107 GCATTGCAGTCGTGTGCTTT 60.318 50.000 3.15 0.00 44.32 3.51
147 148 1.678360 CATTGCAGTCGTGTGCTTTC 58.322 50.000 11.96 0.00 44.32 2.62
148 149 1.002576 CATTGCAGTCGTGTGCTTTCA 60.003 47.619 11.96 0.00 44.32 2.69
149 150 0.376852 TTGCAGTCGTGTGCTTTCAC 59.623 50.000 11.96 0.00 44.32 3.18
150 151 0.461870 TGCAGTCGTGTGCTTTCACT 60.462 50.000 11.96 0.00 44.32 3.41
151 152 1.202475 TGCAGTCGTGTGCTTTCACTA 60.202 47.619 11.96 0.00 44.32 2.74
152 153 2.069273 GCAGTCGTGTGCTTTCACTAT 58.931 47.619 4.75 0.00 43.49 2.12
153 154 2.480419 GCAGTCGTGTGCTTTCACTATT 59.520 45.455 4.75 0.00 43.49 1.73
154 155 3.423645 GCAGTCGTGTGCTTTCACTATTC 60.424 47.826 4.75 0.00 43.49 1.75
155 156 3.123621 CAGTCGTGTGCTTTCACTATTCC 59.876 47.826 0.00 0.00 43.49 3.01
156 157 3.006967 AGTCGTGTGCTTTCACTATTCCT 59.993 43.478 0.00 0.00 43.49 3.36
157 158 3.123621 GTCGTGTGCTTTCACTATTCCTG 59.876 47.826 0.00 0.00 43.49 3.86
158 159 2.159653 CGTGTGCTTTCACTATTCCTGC 60.160 50.000 0.00 0.00 43.49 4.85
159 160 2.076100 TGTGCTTTCACTATTCCTGCG 58.924 47.619 0.00 0.00 43.49 5.18
160 161 2.076863 GTGCTTTCACTATTCCTGCGT 58.923 47.619 0.00 0.00 40.03 5.24
161 162 2.484264 GTGCTTTCACTATTCCTGCGTT 59.516 45.455 0.00 0.00 40.03 4.84
162 163 3.058224 GTGCTTTCACTATTCCTGCGTTT 60.058 43.478 0.00 0.00 40.03 3.60
163 164 3.568007 TGCTTTCACTATTCCTGCGTTTT 59.432 39.130 0.00 0.00 0.00 2.43
164 165 4.037446 TGCTTTCACTATTCCTGCGTTTTT 59.963 37.500 0.00 0.00 0.00 1.94
165 166 5.239744 TGCTTTCACTATTCCTGCGTTTTTA 59.760 36.000 0.00 0.00 0.00 1.52
166 167 5.795441 GCTTTCACTATTCCTGCGTTTTTAG 59.205 40.000 0.00 0.00 0.00 1.85
167 168 5.873179 TTCACTATTCCTGCGTTTTTAGG 57.127 39.130 0.00 0.00 35.34 2.69
168 169 4.901868 TCACTATTCCTGCGTTTTTAGGT 58.098 39.130 0.00 0.00 35.54 3.08
169 170 5.310451 TCACTATTCCTGCGTTTTTAGGTT 58.690 37.500 0.00 0.00 35.54 3.50
170 171 5.410439 TCACTATTCCTGCGTTTTTAGGTTC 59.590 40.000 0.00 0.00 35.54 3.62
171 172 5.180492 CACTATTCCTGCGTTTTTAGGTTCA 59.820 40.000 0.00 0.00 35.54 3.18
172 173 5.944007 ACTATTCCTGCGTTTTTAGGTTCAT 59.056 36.000 0.00 0.00 35.54 2.57
173 174 4.497473 TTCCTGCGTTTTTAGGTTCATG 57.503 40.909 0.00 0.00 35.54 3.07
174 175 2.227865 TCCTGCGTTTTTAGGTTCATGC 59.772 45.455 0.00 0.00 35.54 4.06
175 176 2.228822 CCTGCGTTTTTAGGTTCATGCT 59.771 45.455 0.00 0.00 0.00 3.79
176 177 3.305335 CCTGCGTTTTTAGGTTCATGCTT 60.305 43.478 0.00 0.00 0.00 3.91
177 178 4.083003 CCTGCGTTTTTAGGTTCATGCTTA 60.083 41.667 0.00 0.00 0.00 3.09
178 179 5.393027 CCTGCGTTTTTAGGTTCATGCTTAT 60.393 40.000 0.00 0.00 0.00 1.73
179 180 5.636837 TGCGTTTTTAGGTTCATGCTTATC 58.363 37.500 0.00 0.00 0.00 1.75
180 181 4.728608 GCGTTTTTAGGTTCATGCTTATCG 59.271 41.667 0.00 0.00 0.00 2.92
181 182 5.446741 GCGTTTTTAGGTTCATGCTTATCGA 60.447 40.000 0.00 0.00 0.00 3.59
182 183 6.539324 CGTTTTTAGGTTCATGCTTATCGAA 58.461 36.000 0.00 0.00 0.00 3.71
183 184 6.682863 CGTTTTTAGGTTCATGCTTATCGAAG 59.317 38.462 0.00 0.00 35.60 3.79
184 185 7.412563 CGTTTTTAGGTTCATGCTTATCGAAGA 60.413 37.037 0.00 0.00 45.75 2.87
185 186 8.398665 GTTTTTAGGTTCATGCTTATCGAAGAT 58.601 33.333 0.00 0.00 45.12 2.40
186 187 7.482654 TTTAGGTTCATGCTTATCGAAGATG 57.517 36.000 0.00 0.00 45.12 2.90
187 188 3.812053 AGGTTCATGCTTATCGAAGATGC 59.188 43.478 0.00 0.00 45.12 3.91
188 189 3.058639 GGTTCATGCTTATCGAAGATGCC 60.059 47.826 0.00 0.00 45.12 4.40
189 190 2.771089 TCATGCTTATCGAAGATGCCC 58.229 47.619 0.00 0.00 45.12 5.36
190 191 2.369860 TCATGCTTATCGAAGATGCCCT 59.630 45.455 0.00 0.00 45.12 5.19
191 192 2.533266 TGCTTATCGAAGATGCCCTC 57.467 50.000 0.00 0.00 45.12 4.30
192 193 1.762370 TGCTTATCGAAGATGCCCTCA 59.238 47.619 0.00 0.00 45.12 3.86
193 194 2.369860 TGCTTATCGAAGATGCCCTCAT 59.630 45.455 0.00 0.00 45.12 2.90
194 195 3.578282 TGCTTATCGAAGATGCCCTCATA 59.422 43.478 0.00 0.00 45.12 2.15
195 196 4.223700 TGCTTATCGAAGATGCCCTCATAT 59.776 41.667 0.00 0.00 45.12 1.78
196 197 5.181748 GCTTATCGAAGATGCCCTCATATT 58.818 41.667 0.00 0.00 45.12 1.28
197 198 5.645497 GCTTATCGAAGATGCCCTCATATTT 59.355 40.000 0.00 0.00 45.12 1.40
198 199 6.150140 GCTTATCGAAGATGCCCTCATATTTT 59.850 38.462 0.00 0.00 45.12 1.82
199 200 5.954296 ATCGAAGATGCCCTCATATTTTG 57.046 39.130 0.00 0.00 45.12 2.44
200 201 4.780815 TCGAAGATGCCCTCATATTTTGT 58.219 39.130 0.00 0.00 34.57 2.83
201 202 4.816385 TCGAAGATGCCCTCATATTTTGTC 59.184 41.667 0.00 0.00 34.57 3.18
202 203 4.818546 CGAAGATGCCCTCATATTTTGTCT 59.181 41.667 0.00 0.00 34.57 3.41
203 204 5.297776 CGAAGATGCCCTCATATTTTGTCTT 59.702 40.000 0.00 0.00 34.57 3.01
204 205 6.483307 CGAAGATGCCCTCATATTTTGTCTTA 59.517 38.462 0.00 0.00 34.57 2.10
205 206 7.012327 CGAAGATGCCCTCATATTTTGTCTTAA 59.988 37.037 0.00 0.00 34.57 1.85
206 207 8.593945 AAGATGCCCTCATATTTTGTCTTAAA 57.406 30.769 0.00 0.00 30.58 1.52
207 208 8.230472 AGATGCCCTCATATTTTGTCTTAAAG 57.770 34.615 0.00 0.00 31.96 1.85
208 209 8.055181 AGATGCCCTCATATTTTGTCTTAAAGA 58.945 33.333 0.00 0.00 31.96 2.52
209 210 8.593945 ATGCCCTCATATTTTGTCTTAAAGAA 57.406 30.769 0.00 0.00 0.00 2.52
210 211 8.415950 TGCCCTCATATTTTGTCTTAAAGAAA 57.584 30.769 0.00 0.00 0.00 2.52
211 212 8.303876 TGCCCTCATATTTTGTCTTAAAGAAAC 58.696 33.333 0.00 0.00 0.00 2.78
212 213 8.303876 GCCCTCATATTTTGTCTTAAAGAAACA 58.696 33.333 0.00 0.00 0.00 2.83
216 217 9.691362 TCATATTTTGTCTTAAAGAAACAAGCC 57.309 29.630 0.00 0.00 34.64 4.35
217 218 8.925700 CATATTTTGTCTTAAAGAAACAAGCCC 58.074 33.333 0.00 0.00 34.64 5.19
218 219 6.538945 TTTTGTCTTAAAGAAACAAGCCCT 57.461 33.333 0.00 0.00 34.64 5.19
219 220 5.767816 TTGTCTTAAAGAAACAAGCCCTC 57.232 39.130 0.00 0.00 0.00 4.30
220 221 4.787551 TGTCTTAAAGAAACAAGCCCTCA 58.212 39.130 0.00 0.00 0.00 3.86
221 222 5.385198 TGTCTTAAAGAAACAAGCCCTCAT 58.615 37.500 0.00 0.00 0.00 2.90
222 223 5.833131 TGTCTTAAAGAAACAAGCCCTCATT 59.167 36.000 0.00 0.00 0.00 2.57
223 224 6.152379 GTCTTAAAGAAACAAGCCCTCATTG 58.848 40.000 0.00 0.00 0.00 2.82
224 225 3.391506 AAAGAAACAAGCCCTCATTGC 57.608 42.857 0.00 0.00 0.00 3.56
225 226 2.299326 AGAAACAAGCCCTCATTGCT 57.701 45.000 0.00 0.00 41.89 3.91
227 228 2.967887 AGAAACAAGCCCTCATTGCTTT 59.032 40.909 0.00 0.00 46.47 3.51
228 229 2.825861 AACAAGCCCTCATTGCTTTG 57.174 45.000 0.00 0.00 46.47 2.77
229 230 1.708341 ACAAGCCCTCATTGCTTTGT 58.292 45.000 0.00 0.00 46.47 2.83
230 231 2.041701 ACAAGCCCTCATTGCTTTGTT 58.958 42.857 0.00 0.00 46.47 2.83
231 232 2.224113 ACAAGCCCTCATTGCTTTGTTG 60.224 45.455 0.00 0.00 46.47 3.33
232 233 1.708341 AGCCCTCATTGCTTTGTTGT 58.292 45.000 0.00 0.00 34.87 3.32
233 234 1.615392 AGCCCTCATTGCTTTGTTGTC 59.385 47.619 0.00 0.00 34.87 3.18
234 235 1.337167 GCCCTCATTGCTTTGTTGTCC 60.337 52.381 0.00 0.00 0.00 4.02
235 236 1.962807 CCCTCATTGCTTTGTTGTCCA 59.037 47.619 0.00 0.00 0.00 4.02
236 237 2.564062 CCCTCATTGCTTTGTTGTCCAT 59.436 45.455 0.00 0.00 0.00 3.41
237 238 3.007182 CCCTCATTGCTTTGTTGTCCATT 59.993 43.478 0.00 0.00 0.00 3.16
238 239 4.503643 CCCTCATTGCTTTGTTGTCCATTT 60.504 41.667 0.00 0.00 0.00 2.32
239 240 5.279406 CCCTCATTGCTTTGTTGTCCATTTA 60.279 40.000 0.00 0.00 0.00 1.40
240 241 6.400568 CCTCATTGCTTTGTTGTCCATTTAT 58.599 36.000 0.00 0.00 0.00 1.40
241 242 6.875195 CCTCATTGCTTTGTTGTCCATTTATT 59.125 34.615 0.00 0.00 0.00 1.40
242 243 7.388500 CCTCATTGCTTTGTTGTCCATTTATTT 59.612 33.333 0.00 0.00 0.00 1.40
243 244 9.421806 CTCATTGCTTTGTTGTCCATTTATTTA 57.578 29.630 0.00 0.00 0.00 1.40
244 245 9.770097 TCATTGCTTTGTTGTCCATTTATTTAA 57.230 25.926 0.00 0.00 0.00 1.52
247 248 9.606631 TTGCTTTGTTGTCCATTTATTTAAAGT 57.393 25.926 0.00 0.00 0.00 2.66
283 284 2.513753 TCACCAGGGTGCATTAAACAG 58.486 47.619 13.64 0.00 45.04 3.16
376 380 3.066291 ACGCCCAAATATTGACACTGA 57.934 42.857 0.00 0.00 0.00 3.41
388 392 7.765695 ATATTGACACTGAATTTCACAAGGT 57.234 32.000 0.00 0.00 0.00 3.50
431 435 9.685828 TTTACCAACATGACTGCTTTAAATAAC 57.314 29.630 0.00 0.00 0.00 1.89
536 544 3.155501 TCTAAAGCTCGGCTATACTCCC 58.844 50.000 0.00 0.00 38.25 4.30
547 555 4.156922 CGGCTATACTCCCTCTGTATCAAG 59.843 50.000 0.00 0.00 33.32 3.02
558 566 8.246430 TCCCTCTGTATCAAGATATAAAACGT 57.754 34.615 0.00 0.00 0.00 3.99
665 677 1.536766 CATGGCTTCACGTGATGTTGT 59.463 47.619 26.48 13.49 0.00 3.32
667 679 2.020720 TGGCTTCACGTGATGTTGTTT 58.979 42.857 26.48 0.00 0.00 2.83
668 680 2.223456 TGGCTTCACGTGATGTTGTTTG 60.223 45.455 26.48 9.55 0.00 2.93
670 682 2.541588 GCTTCACGTGATGTTGTTTGCT 60.542 45.455 26.48 0.00 0.00 3.91
671 683 3.303725 GCTTCACGTGATGTTGTTTGCTA 60.304 43.478 26.48 5.77 0.00 3.49
672 684 4.788201 GCTTCACGTGATGTTGTTTGCTAA 60.788 41.667 26.48 5.58 0.00 3.09
673 685 4.884458 TCACGTGATGTTGTTTGCTAAA 57.116 36.364 15.76 0.00 0.00 1.85
674 686 4.593157 TCACGTGATGTTGTTTGCTAAAC 58.407 39.130 15.76 5.22 41.73 2.01
675 687 3.728718 CACGTGATGTTGTTTGCTAAACC 59.271 43.478 10.90 0.00 40.67 3.27
729 741 2.806608 ACAAAGCAACCAATGAGCAG 57.193 45.000 0.00 0.00 0.00 4.24
796 808 1.408822 CCCAAGCAATACTCCACCTCC 60.409 57.143 0.00 0.00 0.00 4.30
817 840 3.374762 CCCCATCCCTCCTCCTAGATATC 60.375 56.522 0.00 0.00 0.00 1.63
893 918 3.064271 CCGTTATTTGTTATCCCCACACG 59.936 47.826 0.00 0.00 0.00 4.49
895 920 2.208132 ATTTGTTATCCCCACACGCA 57.792 45.000 0.00 0.00 0.00 5.24
938 967 3.574445 GCATCAGCAGCGGCAGAG 61.574 66.667 12.44 4.18 44.61 3.35
1468 1509 5.191727 TGGATTGGAGGATTTGTATGTGT 57.808 39.130 0.00 0.00 0.00 3.72
1469 1510 4.949238 TGGATTGGAGGATTTGTATGTGTG 59.051 41.667 0.00 0.00 0.00 3.82
1547 1588 5.088739 GCTCGTATGGTTTCAATTCAGTTG 58.911 41.667 0.00 0.00 39.25 3.16
1668 1709 7.040062 TGTTTATGGTACTGATTGGTTCCTTTG 60.040 37.037 0.00 0.00 0.00 2.77
1698 1739 3.798511 GGGGCTCAGGGGCAGTAC 61.799 72.222 0.00 0.00 42.84 2.73
1726 1767 8.056571 GTGTACTTCATTGATTTACGCAGATAC 58.943 37.037 11.24 0.00 0.00 2.24
1740 1781 3.242969 CGCAGATACACGCTAGGACTTTA 60.243 47.826 0.00 0.00 0.00 1.85
1756 1797 5.123979 AGGACTTTAAGCCATCGATTGAAAC 59.876 40.000 0.00 0.00 0.00 2.78
1761 1802 0.395724 GCCATCGATTGAAACCCCCT 60.396 55.000 0.00 0.00 0.00 4.79
1791 1832 7.845066 ATGAGATAATCACGAATCCATGATG 57.155 36.000 0.00 0.00 41.91 3.07
1814 1855 5.946972 TGTGGTTACAATGGTAATTAGTGGG 59.053 40.000 0.00 0.00 41.28 4.61
1837 1878 0.471617 GGCTATGTGCTGTCTGGGAT 59.528 55.000 0.00 0.00 42.39 3.85
1909 1950 2.238898 GGGTTAGATGGTGCTTGTACCT 59.761 50.000 9.16 0.00 41.43 3.08
1910 1951 3.308188 GGGTTAGATGGTGCTTGTACCTT 60.308 47.826 9.16 3.01 41.43 3.50
1958 1999 6.475504 TCTCTACTTTTGATGATTGCTTCCA 58.524 36.000 0.00 0.00 0.00 3.53
1977 2018 7.226325 TGCTTCCATTATTTTGTTGTTTTCTGG 59.774 33.333 0.00 0.00 0.00 3.86
2015 2056 8.941977 ACATACTCATTTCAATAGCGTAAAACA 58.058 29.630 0.00 0.00 0.00 2.83
2061 2102 9.268282 TGTTATAGACCTTTATCCAAGAACTCT 57.732 33.333 0.00 0.00 33.80 3.24
2174 2268 9.699410 AGGGTTCTTATTATGATGTGAATTCAA 57.301 29.630 10.35 1.23 0.00 2.69
2411 2505 2.557924 TCCGAAGCTGCATGTTTGATTT 59.442 40.909 1.02 0.00 0.00 2.17
2433 2527 8.885494 ATTTTAACACTTGTGTTATTGTGCAT 57.115 26.923 21.99 9.21 34.66 3.96
2446 2540 6.645827 TGTTATTGTGCATGGTCAAATTTCTG 59.354 34.615 0.00 0.00 0.00 3.02
2455 2549 6.470235 GCATGGTCAAATTTCTGAATAGTTCG 59.530 38.462 0.00 0.00 0.00 3.95
2459 2553 7.444183 TGGTCAAATTTCTGAATAGTTCGTCTT 59.556 33.333 0.00 0.00 0.00 3.01
2529 2623 5.432645 TGGGATGCTGTAATGAATAACGAA 58.567 37.500 0.00 0.00 0.00 3.85
2570 2664 6.159398 AGGAGATCTTTTCAGGATGGTATGTT 59.841 38.462 0.00 0.00 36.16 2.71
2655 2756 9.314321 CTGTTTCTGTTTGTTTACTAGAAGAGA 57.686 33.333 0.00 0.00 0.00 3.10
3036 3223 2.444624 CGTCTTCATCGTGGTGGCG 61.445 63.158 0.00 0.00 0.00 5.69
3178 3551 1.408969 GACTTGGTTTGAAAGGCCCA 58.591 50.000 0.00 0.00 0.00 5.36
3328 3702 4.022589 AGTGTGGTGATTGCAAGATTTCTG 60.023 41.667 4.94 0.00 0.00 3.02
3357 3731 2.488153 GTTTTGTAGGACATCACAGGCC 59.512 50.000 0.00 0.00 0.00 5.19
3358 3732 1.656587 TTGTAGGACATCACAGGCCT 58.343 50.000 0.00 0.00 34.56 5.19
3359 3733 1.195115 TGTAGGACATCACAGGCCTC 58.805 55.000 0.00 0.00 32.04 4.70
3360 3734 0.103208 GTAGGACATCACAGGCCTCG 59.897 60.000 0.00 0.52 32.04 4.63
3361 3735 1.676678 TAGGACATCACAGGCCTCGC 61.677 60.000 0.00 0.00 32.04 5.03
3362 3736 2.887568 GACATCACAGGCCTCGCG 60.888 66.667 0.00 0.00 0.00 5.87
3363 3737 3.356639 GACATCACAGGCCTCGCGA 62.357 63.158 9.26 9.26 0.00 5.87
3364 3738 2.107750 CATCACAGGCCTCGCGAT 59.892 61.111 10.36 1.61 0.00 4.58
3365 3739 1.522355 CATCACAGGCCTCGCGATT 60.522 57.895 10.36 0.00 0.00 3.34
3366 3740 1.091771 CATCACAGGCCTCGCGATTT 61.092 55.000 10.36 0.00 0.00 2.17
3367 3741 0.464036 ATCACAGGCCTCGCGATTTA 59.536 50.000 10.36 0.00 0.00 1.40
3368 3742 0.459585 TCACAGGCCTCGCGATTTAC 60.460 55.000 10.36 0.02 0.00 2.01
3369 3743 0.739462 CACAGGCCTCGCGATTTACA 60.739 55.000 10.36 0.00 0.00 2.41
3370 3744 0.178068 ACAGGCCTCGCGATTTACAT 59.822 50.000 10.36 0.00 0.00 2.29
3371 3745 0.861837 CAGGCCTCGCGATTTACATC 59.138 55.000 10.36 0.00 0.00 3.06
3372 3746 0.249911 AGGCCTCGCGATTTACATCC 60.250 55.000 10.36 3.32 0.00 3.51
3395 3769 5.624900 CCACACGAAACTTGTACATTGATTG 59.375 40.000 0.00 0.00 0.00 2.67
3396 3770 6.198687 CACACGAAACTTGTACATTGATTGT 58.801 36.000 0.00 0.00 42.62 2.71
3397 3771 6.690957 CACACGAAACTTGTACATTGATTGTT 59.309 34.615 0.00 0.00 39.87 2.83
3398 3772 7.853437 CACACGAAACTTGTACATTGATTGTTA 59.147 33.333 0.00 0.00 39.87 2.41
3399 3773 8.564574 ACACGAAACTTGTACATTGATTGTTAT 58.435 29.630 0.00 0.00 39.87 1.89
3441 3815 8.253810 TCATTTGACCATGAAACTGTTGTAAAA 58.746 29.630 0.00 0.00 29.81 1.52
3442 3816 9.044150 CATTTGACCATGAAACTGTTGTAAAAT 57.956 29.630 0.00 0.00 0.00 1.82
3467 3872 5.253330 TGTAATTGAAAGTCAGTGGGGATC 58.747 41.667 0.00 0.00 0.00 3.36
3471 3876 2.040278 TGAAAGTCAGTGGGGATCCTTG 59.960 50.000 12.58 5.79 0.00 3.61
3479 3884 0.830648 TGGGGATCCTTGATCGTGTC 59.169 55.000 12.58 0.00 39.72 3.67
3480 3885 1.123928 GGGGATCCTTGATCGTGTCT 58.876 55.000 12.58 0.00 39.72 3.41
3517 3947 1.469940 CGCCAGCGAGTAGTTTCAGAT 60.470 52.381 6.06 0.00 42.83 2.90
3535 3965 8.924691 GTTTCAGATGATAGATAGAATGCTGAC 58.075 37.037 0.00 0.00 30.49 3.51
3540 3970 8.868103 AGATGATAGATAGAATGCTGACAAGAA 58.132 33.333 0.00 0.00 0.00 2.52
3541 3971 9.486497 GATGATAGATAGAATGCTGACAAGAAA 57.514 33.333 0.00 0.00 0.00 2.52
3542 3972 8.883954 TGATAGATAGAATGCTGACAAGAAAG 57.116 34.615 0.00 0.00 0.00 2.62
3543 3973 8.481314 TGATAGATAGAATGCTGACAAGAAAGT 58.519 33.333 0.00 0.00 0.00 2.66
3544 3974 8.885494 ATAGATAGAATGCTGACAAGAAAGTC 57.115 34.615 0.00 0.00 38.99 3.01
3545 3975 6.112058 AGATAGAATGCTGACAAGAAAGTCC 58.888 40.000 0.00 0.00 37.73 3.85
3546 3976 4.090761 AGAATGCTGACAAGAAAGTCCA 57.909 40.909 0.00 0.00 37.73 4.02
3547 3977 4.070716 AGAATGCTGACAAGAAAGTCCAG 58.929 43.478 0.00 0.00 37.73 3.86
3548 3978 3.498774 ATGCTGACAAGAAAGTCCAGT 57.501 42.857 0.00 0.00 37.73 4.00
3549 3979 2.564771 TGCTGACAAGAAAGTCCAGTG 58.435 47.619 0.00 0.00 37.73 3.66
3550 3980 1.876156 GCTGACAAGAAAGTCCAGTGG 59.124 52.381 1.40 1.40 37.73 4.00
3551 3981 1.876156 CTGACAAGAAAGTCCAGTGGC 59.124 52.381 3.51 0.00 37.73 5.01
3552 3982 1.211703 TGACAAGAAAGTCCAGTGGCA 59.788 47.619 3.51 0.00 37.73 4.92
3553 3983 1.876156 GACAAGAAAGTCCAGTGGCAG 59.124 52.381 3.51 0.00 32.36 4.85
3554 3984 1.490490 ACAAGAAAGTCCAGTGGCAGA 59.510 47.619 3.51 0.00 0.00 4.26
3555 3985 2.107204 ACAAGAAAGTCCAGTGGCAGAT 59.893 45.455 3.51 0.00 0.00 2.90
3556 3986 3.152341 CAAGAAAGTCCAGTGGCAGATT 58.848 45.455 3.51 0.00 0.00 2.40
3557 3987 3.515602 AGAAAGTCCAGTGGCAGATTT 57.484 42.857 3.51 2.42 0.00 2.17
3558 3988 3.837355 AGAAAGTCCAGTGGCAGATTTT 58.163 40.909 3.51 0.00 0.00 1.82
3559 3989 3.571401 AGAAAGTCCAGTGGCAGATTTTG 59.429 43.478 3.51 0.00 0.00 2.44
3665 4095 4.164843 ACACAGTTACCACAAATGAGGT 57.835 40.909 7.66 7.66 41.80 3.85
3686 4116 0.755686 TGCAAAACCATCCAACCCAC 59.244 50.000 0.00 0.00 0.00 4.61
4783 5229 1.672356 CCGAGGAGCCTTGGTGTTG 60.672 63.158 13.81 0.00 41.59 3.33
4824 5270 4.280019 ACGGAAGGGGTTGGTGGC 62.280 66.667 0.00 0.00 0.00 5.01
4880 5331 3.946558 AGAGACGGTACTTGTAGATGGAC 59.053 47.826 0.00 0.00 0.00 4.02
4985 5436 3.119637 ACGTGGTTGTTTCTTTGGTCAAG 60.120 43.478 0.00 0.00 0.00 3.02
5007 5458 1.956477 ACTTGCAGAAAGGCGTTCATT 59.044 42.857 15.39 0.00 40.51 2.57
5090 5552 1.944024 ACAGATCTCTTACTCGGAGCG 59.056 52.381 4.58 0.00 0.00 5.03
5104 5566 1.301479 GAGCGTTTCCAACCGGACT 60.301 57.895 9.46 0.00 42.67 3.85
5466 5928 6.459298 GCAAGAAATCCAGACATATTGGTGAG 60.459 42.308 0.00 0.00 37.02 3.51
5742 6204 0.250252 TGTGCTTCATGCTCACCGAA 60.250 50.000 8.59 0.00 39.83 4.30
6647 7109 5.518847 TCCATACATCTAACTTTTTCTCGCG 59.481 40.000 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.052141 ACAAATGAATCCTTGGGAAAAGAAAAA 58.948 29.630 0.00 0.00 34.34 1.94
23 24 7.572814 ACAAATGAATCCTTGGGAAAAGAAAA 58.427 30.769 0.00 0.00 34.34 2.29
24 25 7.135591 ACAAATGAATCCTTGGGAAAAGAAA 57.864 32.000 0.00 0.00 34.34 2.52
25 26 6.745794 ACAAATGAATCCTTGGGAAAAGAA 57.254 33.333 0.00 0.00 34.34 2.52
26 27 6.210584 GGTACAAATGAATCCTTGGGAAAAGA 59.789 38.462 0.00 0.00 34.34 2.52
27 28 6.014669 TGGTACAAATGAATCCTTGGGAAAAG 60.015 38.462 0.00 0.00 31.12 2.27
28 29 5.841237 TGGTACAAATGAATCCTTGGGAAAA 59.159 36.000 0.00 0.00 31.12 2.29
29 30 5.398236 TGGTACAAATGAATCCTTGGGAAA 58.602 37.500 0.00 0.00 31.12 3.13
30 31 5.004361 TGGTACAAATGAATCCTTGGGAA 57.996 39.130 0.00 0.00 31.12 3.97
31 32 4.290985 TCTGGTACAAATGAATCCTTGGGA 59.709 41.667 0.00 0.00 38.70 4.37
32 33 4.599041 TCTGGTACAAATGAATCCTTGGG 58.401 43.478 0.00 0.00 38.70 4.12
33 34 5.124457 CACTCTGGTACAAATGAATCCTTGG 59.876 44.000 0.00 0.00 38.70 3.61
34 35 5.707298 ACACTCTGGTACAAATGAATCCTTG 59.293 40.000 0.00 0.00 38.70 3.61
35 36 5.880901 ACACTCTGGTACAAATGAATCCTT 58.119 37.500 0.00 0.00 38.70 3.36
36 37 5.505181 ACACTCTGGTACAAATGAATCCT 57.495 39.130 0.00 0.00 38.70 3.24
37 38 6.206634 TGAAACACTCTGGTACAAATGAATCC 59.793 38.462 0.00 0.00 38.70 3.01
38 39 7.202016 TGAAACACTCTGGTACAAATGAATC 57.798 36.000 0.00 0.00 38.70 2.52
39 40 7.765695 ATGAAACACTCTGGTACAAATGAAT 57.234 32.000 0.00 0.00 38.70 2.57
40 41 8.154203 TCTATGAAACACTCTGGTACAAATGAA 58.846 33.333 0.00 0.00 38.70 2.57
41 42 7.676004 TCTATGAAACACTCTGGTACAAATGA 58.324 34.615 0.00 0.00 38.70 2.57
42 43 7.905604 TCTATGAAACACTCTGGTACAAATG 57.094 36.000 0.00 0.00 38.70 2.32
43 44 8.918202 TTTCTATGAAACACTCTGGTACAAAT 57.082 30.769 0.00 0.00 38.70 2.32
44 45 7.041372 GCTTTCTATGAAACACTCTGGTACAAA 60.041 37.037 0.00 0.00 38.70 2.83
45 46 6.426937 GCTTTCTATGAAACACTCTGGTACAA 59.573 38.462 0.00 0.00 38.70 2.41
46 47 5.932303 GCTTTCTATGAAACACTCTGGTACA 59.068 40.000 0.00 0.00 0.00 2.90
47 48 6.166982 AGCTTTCTATGAAACACTCTGGTAC 58.833 40.000 0.00 0.00 0.00 3.34
48 49 6.360370 AGCTTTCTATGAAACACTCTGGTA 57.640 37.500 0.00 0.00 0.00 3.25
49 50 5.234466 AGCTTTCTATGAAACACTCTGGT 57.766 39.130 0.00 0.00 0.00 4.00
50 51 6.183360 GCTAAGCTTTCTATGAAACACTCTGG 60.183 42.308 3.20 0.00 0.00 3.86
51 52 6.369890 TGCTAAGCTTTCTATGAAACACTCTG 59.630 38.462 3.20 0.00 0.00 3.35
52 53 6.467677 TGCTAAGCTTTCTATGAAACACTCT 58.532 36.000 3.20 0.00 0.00 3.24
53 54 6.727824 TGCTAAGCTTTCTATGAAACACTC 57.272 37.500 3.20 0.00 0.00 3.51
54 55 6.317391 GGATGCTAAGCTTTCTATGAAACACT 59.683 38.462 3.20 0.00 0.00 3.55
55 56 6.094048 TGGATGCTAAGCTTTCTATGAAACAC 59.906 38.462 3.20 0.00 0.00 3.32
56 57 6.179756 TGGATGCTAAGCTTTCTATGAAACA 58.820 36.000 3.20 0.00 0.00 2.83
57 58 6.683974 TGGATGCTAAGCTTTCTATGAAAC 57.316 37.500 3.20 0.00 0.00 2.78
58 59 7.557358 TGATTGGATGCTAAGCTTTCTATGAAA 59.443 33.333 3.20 0.00 0.00 2.69
59 60 7.056006 TGATTGGATGCTAAGCTTTCTATGAA 58.944 34.615 3.20 0.00 0.00 2.57
60 61 6.594744 TGATTGGATGCTAAGCTTTCTATGA 58.405 36.000 3.20 0.00 0.00 2.15
61 62 6.872628 TGATTGGATGCTAAGCTTTCTATG 57.127 37.500 3.20 0.00 0.00 2.23
62 63 7.886629 TTTGATTGGATGCTAAGCTTTCTAT 57.113 32.000 3.20 0.00 0.00 1.98
63 64 7.362920 GGTTTTGATTGGATGCTAAGCTTTCTA 60.363 37.037 3.20 0.00 0.00 2.10
64 65 6.393171 GTTTTGATTGGATGCTAAGCTTTCT 58.607 36.000 3.20 0.00 0.00 2.52
65 66 5.578336 GGTTTTGATTGGATGCTAAGCTTTC 59.422 40.000 3.20 0.00 0.00 2.62
66 67 5.246883 AGGTTTTGATTGGATGCTAAGCTTT 59.753 36.000 3.20 0.00 0.00 3.51
67 68 4.774200 AGGTTTTGATTGGATGCTAAGCTT 59.226 37.500 3.48 3.48 0.00 3.74
68 69 4.347607 AGGTTTTGATTGGATGCTAAGCT 58.652 39.130 0.00 0.00 0.00 3.74
69 70 4.676546 GAGGTTTTGATTGGATGCTAAGC 58.323 43.478 0.00 0.00 0.00 3.09
70 71 4.635765 TCGAGGTTTTGATTGGATGCTAAG 59.364 41.667 0.00 0.00 0.00 2.18
71 72 4.394920 GTCGAGGTTTTGATTGGATGCTAA 59.605 41.667 0.00 0.00 0.00 3.09
72 73 3.938963 GTCGAGGTTTTGATTGGATGCTA 59.061 43.478 0.00 0.00 0.00 3.49
73 74 2.749621 GTCGAGGTTTTGATTGGATGCT 59.250 45.455 0.00 0.00 0.00 3.79
74 75 2.476185 CGTCGAGGTTTTGATTGGATGC 60.476 50.000 0.00 0.00 0.00 3.91
75 76 3.000041 TCGTCGAGGTTTTGATTGGATG 59.000 45.455 4.85 0.00 0.00 3.51
76 77 3.328382 TCGTCGAGGTTTTGATTGGAT 57.672 42.857 4.85 0.00 0.00 3.41
77 78 2.803956 GTTCGTCGAGGTTTTGATTGGA 59.196 45.455 4.85 0.00 0.00 3.53
78 79 2.546368 TGTTCGTCGAGGTTTTGATTGG 59.454 45.455 4.85 0.00 0.00 3.16
79 80 3.870723 TGTTCGTCGAGGTTTTGATTG 57.129 42.857 4.85 0.00 0.00 2.67
80 81 4.886247 TTTGTTCGTCGAGGTTTTGATT 57.114 36.364 4.85 0.00 0.00 2.57
81 82 4.886247 TTTTGTTCGTCGAGGTTTTGAT 57.114 36.364 4.85 0.00 0.00 2.57
82 83 4.886247 ATTTTGTTCGTCGAGGTTTTGA 57.114 36.364 4.85 0.00 0.00 2.69
83 84 5.051973 GGAAATTTTGTTCGTCGAGGTTTTG 60.052 40.000 4.85 0.00 0.00 2.44
84 85 5.038683 GGAAATTTTGTTCGTCGAGGTTTT 58.961 37.500 4.85 0.00 0.00 2.43
85 86 4.603985 GGAAATTTTGTTCGTCGAGGTTT 58.396 39.130 4.85 0.00 0.00 3.27
86 87 3.303526 CGGAAATTTTGTTCGTCGAGGTT 60.304 43.478 4.85 0.00 0.00 3.50
87 88 2.222445 CGGAAATTTTGTTCGTCGAGGT 59.778 45.455 4.85 0.00 0.00 3.85
88 89 2.222445 ACGGAAATTTTGTTCGTCGAGG 59.778 45.455 0.00 0.00 0.00 4.63
89 90 3.515071 ACGGAAATTTTGTTCGTCGAG 57.485 42.857 0.00 0.00 0.00 4.04
90 91 5.401033 TTTACGGAAATTTTGTTCGTCGA 57.599 34.783 11.15 0.00 0.00 4.20
91 92 6.357503 TGAATTTACGGAAATTTTGTTCGTCG 59.642 34.615 19.14 0.00 43.76 5.12
92 93 7.611821 TGAATTTACGGAAATTTTGTTCGTC 57.388 32.000 19.14 5.14 43.76 4.20
93 94 7.988904 TTGAATTTACGGAAATTTTGTTCGT 57.011 28.000 19.14 12.04 43.76 3.85
94 95 9.300441 CATTTGAATTTACGGAAATTTTGTTCG 57.700 29.630 19.14 4.19 43.76 3.95
95 96 9.592720 CCATTTGAATTTACGGAAATTTTGTTC 57.407 29.630 19.14 7.99 43.76 3.18
96 97 8.563732 CCCATTTGAATTTACGGAAATTTTGTT 58.436 29.630 19.14 0.00 43.76 2.83
97 98 7.308288 GCCCATTTGAATTTACGGAAATTTTGT 60.308 33.333 19.14 0.00 43.76 2.83
98 99 7.020602 GCCCATTTGAATTTACGGAAATTTTG 58.979 34.615 19.14 13.60 43.76 2.44
99 100 6.712547 TGCCCATTTGAATTTACGGAAATTTT 59.287 30.769 19.14 0.00 43.76 1.82
100 101 6.234177 TGCCCATTTGAATTTACGGAAATTT 58.766 32.000 19.14 0.86 43.76 1.82
101 102 5.799213 TGCCCATTTGAATTTACGGAAATT 58.201 33.333 18.25 18.25 45.88 1.82
102 103 5.413309 TGCCCATTTGAATTTACGGAAAT 57.587 34.783 0.00 0.00 36.82 2.17
103 104 4.873746 TGCCCATTTGAATTTACGGAAA 57.126 36.364 0.00 0.00 0.00 3.13
104 105 4.382470 CCATGCCCATTTGAATTTACGGAA 60.382 41.667 0.00 0.00 0.00 4.30
105 106 3.131933 CCATGCCCATTTGAATTTACGGA 59.868 43.478 0.00 0.00 0.00 4.69
106 107 3.456280 CCATGCCCATTTGAATTTACGG 58.544 45.455 0.00 0.00 0.00 4.02
107 108 2.865551 GCCATGCCCATTTGAATTTACG 59.134 45.455 0.00 0.00 0.00 3.18
108 109 3.871485 TGCCATGCCCATTTGAATTTAC 58.129 40.909 0.00 0.00 0.00 2.01
109 110 4.774660 ATGCCATGCCCATTTGAATTTA 57.225 36.364 0.00 0.00 0.00 1.40
110 111 3.655615 ATGCCATGCCCATTTGAATTT 57.344 38.095 0.00 0.00 0.00 1.82
111 112 3.283751 CAATGCCATGCCCATTTGAATT 58.716 40.909 6.99 0.00 30.90 2.17
112 113 2.925724 CAATGCCATGCCCATTTGAAT 58.074 42.857 6.99 0.00 30.90 2.57
113 114 1.679336 GCAATGCCATGCCCATTTGAA 60.679 47.619 0.00 0.00 40.49 2.69
114 115 0.107606 GCAATGCCATGCCCATTTGA 60.108 50.000 0.00 0.00 40.49 2.69
115 116 0.393132 TGCAATGCCATGCCCATTTG 60.393 50.000 1.53 5.37 45.83 2.32
116 117 0.107410 CTGCAATGCCATGCCCATTT 60.107 50.000 1.53 0.00 45.83 2.32
117 118 1.268992 ACTGCAATGCCATGCCCATT 61.269 50.000 1.53 4.54 45.83 3.16
118 119 1.682451 GACTGCAATGCCATGCCCAT 61.682 55.000 1.53 0.00 45.83 4.00
119 120 2.284039 ACTGCAATGCCATGCCCA 60.284 55.556 1.53 0.00 45.83 5.36
120 121 2.497770 GACTGCAATGCCATGCCC 59.502 61.111 1.53 0.00 45.83 5.36
121 122 2.103538 CGACTGCAATGCCATGCC 59.896 61.111 1.53 0.00 45.83 4.40
122 123 1.515519 CACGACTGCAATGCCATGC 60.516 57.895 1.53 4.00 46.58 4.06
123 124 0.455464 CACACGACTGCAATGCCATG 60.455 55.000 1.53 0.00 0.00 3.66
124 125 1.878070 CACACGACTGCAATGCCAT 59.122 52.632 1.53 0.00 0.00 4.40
125 126 2.906939 GCACACGACTGCAATGCCA 61.907 57.895 1.53 0.00 37.11 4.92
126 127 2.126734 GCACACGACTGCAATGCC 60.127 61.111 1.53 0.00 37.11 4.40
127 128 0.318107 AAAGCACACGACTGCAATGC 60.318 50.000 0.00 0.00 39.86 3.56
128 129 1.002576 TGAAAGCACACGACTGCAATG 60.003 47.619 10.87 0.00 39.86 2.82
129 130 1.002468 GTGAAAGCACACGACTGCAAT 60.002 47.619 10.87 0.47 44.51 3.56
130 131 0.376852 GTGAAAGCACACGACTGCAA 59.623 50.000 10.87 0.00 44.51 4.08
131 132 2.013807 GTGAAAGCACACGACTGCA 58.986 52.632 10.87 0.00 44.51 4.41
132 133 4.901627 GTGAAAGCACACGACTGC 57.098 55.556 0.00 0.00 44.51 4.40
140 141 2.076863 ACGCAGGAATAGTGAAAGCAC 58.923 47.619 0.00 0.00 45.49 4.40
141 142 2.472695 ACGCAGGAATAGTGAAAGCA 57.527 45.000 0.00 0.00 0.00 3.91
142 143 3.831715 AAACGCAGGAATAGTGAAAGC 57.168 42.857 0.00 0.00 0.00 3.51
143 144 6.072673 ACCTAAAAACGCAGGAATAGTGAAAG 60.073 38.462 0.00 0.00 35.76 2.62
144 145 5.766174 ACCTAAAAACGCAGGAATAGTGAAA 59.234 36.000 0.00 0.00 35.76 2.69
145 146 5.310451 ACCTAAAAACGCAGGAATAGTGAA 58.690 37.500 0.00 0.00 35.76 3.18
146 147 4.901868 ACCTAAAAACGCAGGAATAGTGA 58.098 39.130 0.00 0.00 35.76 3.41
147 148 5.180492 TGAACCTAAAAACGCAGGAATAGTG 59.820 40.000 0.00 0.00 35.76 2.74
148 149 5.310451 TGAACCTAAAAACGCAGGAATAGT 58.690 37.500 0.00 0.00 35.76 2.12
149 150 5.873179 TGAACCTAAAAACGCAGGAATAG 57.127 39.130 0.00 0.00 35.76 1.73
150 151 5.392595 GCATGAACCTAAAAACGCAGGAATA 60.393 40.000 0.00 0.00 35.76 1.75
151 152 4.618227 GCATGAACCTAAAAACGCAGGAAT 60.618 41.667 0.00 0.00 35.76 3.01
152 153 3.305064 GCATGAACCTAAAAACGCAGGAA 60.305 43.478 0.00 0.00 35.76 3.36
153 154 2.227865 GCATGAACCTAAAAACGCAGGA 59.772 45.455 0.00 0.00 35.76 3.86
154 155 2.228822 AGCATGAACCTAAAAACGCAGG 59.771 45.455 0.00 0.00 37.97 4.85
155 156 3.559238 AGCATGAACCTAAAAACGCAG 57.441 42.857 0.00 0.00 0.00 5.18
156 157 5.636837 GATAAGCATGAACCTAAAAACGCA 58.363 37.500 0.00 0.00 0.00 5.24
157 158 4.728608 CGATAAGCATGAACCTAAAAACGC 59.271 41.667 0.00 0.00 0.00 4.84
158 159 6.102006 TCGATAAGCATGAACCTAAAAACG 57.898 37.500 0.00 0.00 0.00 3.60
159 160 7.748847 TCTTCGATAAGCATGAACCTAAAAAC 58.251 34.615 0.00 0.00 32.36 2.43
160 161 7.915293 TCTTCGATAAGCATGAACCTAAAAA 57.085 32.000 0.00 0.00 32.36 1.94
161 162 7.467267 GCATCTTCGATAAGCATGAACCTAAAA 60.467 37.037 0.00 0.00 32.36 1.52
162 163 6.017934 GCATCTTCGATAAGCATGAACCTAAA 60.018 38.462 0.00 0.00 32.36 1.85
163 164 5.466728 GCATCTTCGATAAGCATGAACCTAA 59.533 40.000 0.00 0.00 32.36 2.69
164 165 4.991056 GCATCTTCGATAAGCATGAACCTA 59.009 41.667 0.00 0.00 32.36 3.08
165 166 3.812053 GCATCTTCGATAAGCATGAACCT 59.188 43.478 0.00 0.00 32.36 3.50
166 167 3.058639 GGCATCTTCGATAAGCATGAACC 60.059 47.826 0.00 0.00 32.36 3.62
167 168 3.058639 GGGCATCTTCGATAAGCATGAAC 60.059 47.826 0.00 0.00 32.36 3.18
168 169 3.141398 GGGCATCTTCGATAAGCATGAA 58.859 45.455 0.00 0.00 32.36 2.57
169 170 2.369860 AGGGCATCTTCGATAAGCATGA 59.630 45.455 0.00 0.00 32.36 3.07
170 171 2.740981 GAGGGCATCTTCGATAAGCATG 59.259 50.000 0.00 0.00 32.36 4.06
171 172 2.369860 TGAGGGCATCTTCGATAAGCAT 59.630 45.455 0.00 0.00 32.36 3.79
172 173 1.762370 TGAGGGCATCTTCGATAAGCA 59.238 47.619 0.00 0.00 32.36 3.91
173 174 2.533266 TGAGGGCATCTTCGATAAGC 57.467 50.000 0.00 0.00 32.36 3.09
174 175 7.173907 ACAAAATATGAGGGCATCTTCGATAAG 59.826 37.037 0.00 0.00 35.94 1.73
175 176 6.998074 ACAAAATATGAGGGCATCTTCGATAA 59.002 34.615 0.00 0.00 35.94 1.75
176 177 6.533730 ACAAAATATGAGGGCATCTTCGATA 58.466 36.000 0.00 0.00 35.94 2.92
177 178 5.380043 ACAAAATATGAGGGCATCTTCGAT 58.620 37.500 0.00 0.00 35.94 3.59
178 179 4.780815 ACAAAATATGAGGGCATCTTCGA 58.219 39.130 0.00 0.00 35.94 3.71
179 180 4.818546 AGACAAAATATGAGGGCATCTTCG 59.181 41.667 0.00 0.00 35.94 3.79
180 181 6.705863 AAGACAAAATATGAGGGCATCTTC 57.294 37.500 0.00 0.00 35.94 2.87
181 182 8.593945 TTTAAGACAAAATATGAGGGCATCTT 57.406 30.769 0.00 0.00 35.94 2.40
182 183 8.055181 TCTTTAAGACAAAATATGAGGGCATCT 58.945 33.333 0.00 0.00 35.94 2.90
183 184 8.225603 TCTTTAAGACAAAATATGAGGGCATC 57.774 34.615 0.00 0.00 35.94 3.91
184 185 8.593945 TTCTTTAAGACAAAATATGAGGGCAT 57.406 30.769 0.00 0.00 38.54 4.40
185 186 8.303876 GTTTCTTTAAGACAAAATATGAGGGCA 58.696 33.333 0.00 0.00 0.00 5.36
186 187 8.303876 TGTTTCTTTAAGACAAAATATGAGGGC 58.696 33.333 0.00 0.00 0.00 5.19
190 191 9.691362 GGCTTGTTTCTTTAAGACAAAATATGA 57.309 29.630 0.00 0.00 33.37 2.15
191 192 8.925700 GGGCTTGTTTCTTTAAGACAAAATATG 58.074 33.333 0.00 0.00 33.51 1.78
192 193 8.870116 AGGGCTTGTTTCTTTAAGACAAAATAT 58.130 29.630 0.00 0.00 33.51 1.28
193 194 8.245195 AGGGCTTGTTTCTTTAAGACAAAATA 57.755 30.769 0.00 0.00 33.51 1.40
194 195 7.124573 AGGGCTTGTTTCTTTAAGACAAAAT 57.875 32.000 0.00 0.00 33.51 1.82
195 196 6.153680 TGAGGGCTTGTTTCTTTAAGACAAAA 59.846 34.615 0.00 0.00 33.51 2.44
196 197 5.654650 TGAGGGCTTGTTTCTTTAAGACAAA 59.345 36.000 0.00 0.00 33.51 2.83
197 198 5.197451 TGAGGGCTTGTTTCTTTAAGACAA 58.803 37.500 0.00 0.00 33.51 3.18
198 199 4.787551 TGAGGGCTTGTTTCTTTAAGACA 58.212 39.130 0.00 0.00 33.51 3.41
199 200 5.966742 ATGAGGGCTTGTTTCTTTAAGAC 57.033 39.130 0.00 0.00 0.00 3.01
200 201 5.278957 GCAATGAGGGCTTGTTTCTTTAAGA 60.279 40.000 0.00 0.00 0.00 2.10
201 202 4.925646 GCAATGAGGGCTTGTTTCTTTAAG 59.074 41.667 0.00 0.00 0.00 1.85
202 203 4.588528 AGCAATGAGGGCTTGTTTCTTTAA 59.411 37.500 0.00 0.00 38.81 1.52
203 204 4.151883 AGCAATGAGGGCTTGTTTCTTTA 58.848 39.130 0.00 0.00 38.81 1.85
204 205 2.967887 AGCAATGAGGGCTTGTTTCTTT 59.032 40.909 0.00 0.00 38.81 2.52
205 206 2.601905 AGCAATGAGGGCTTGTTTCTT 58.398 42.857 0.00 0.00 38.81 2.52
206 207 2.299326 AGCAATGAGGGCTTGTTTCT 57.701 45.000 0.00 0.00 38.81 2.52
213 214 1.615392 GACAACAAAGCAATGAGGGCT 59.385 47.619 0.00 0.00 45.15 5.19
214 215 1.337167 GGACAACAAAGCAATGAGGGC 60.337 52.381 0.00 0.00 0.00 5.19
215 216 1.962807 TGGACAACAAAGCAATGAGGG 59.037 47.619 0.00 0.00 0.00 4.30
216 217 3.947910 ATGGACAACAAAGCAATGAGG 57.052 42.857 0.00 0.00 0.00 3.86
217 218 7.894376 AATAAATGGACAACAAAGCAATGAG 57.106 32.000 0.00 0.00 0.00 2.90
218 219 9.770097 TTAAATAAATGGACAACAAAGCAATGA 57.230 25.926 0.00 0.00 0.00 2.57
221 222 9.606631 ACTTTAAATAAATGGACAACAAAGCAA 57.393 25.926 0.00 0.00 0.00 3.91
250 251 3.053395 ACCCTGGTGAAGATGTAATGCAT 60.053 43.478 0.00 0.00 41.24 3.96
251 252 2.308570 ACCCTGGTGAAGATGTAATGCA 59.691 45.455 0.00 0.00 0.00 3.96
252 253 3.004752 ACCCTGGTGAAGATGTAATGC 57.995 47.619 0.00 0.00 0.00 3.56
265 266 2.969821 TCTGTTTAATGCACCCTGGT 57.030 45.000 0.00 0.00 0.00 4.00
266 267 5.913137 TTTATCTGTTTAATGCACCCTGG 57.087 39.130 0.00 0.00 0.00 4.45
267 268 7.775120 AGATTTTATCTGTTTAATGCACCCTG 58.225 34.615 0.00 0.00 38.44 4.45
268 269 7.068716 GGAGATTTTATCTGTTTAATGCACCCT 59.931 37.037 0.00 0.00 40.38 4.34
269 270 7.147915 TGGAGATTTTATCTGTTTAATGCACCC 60.148 37.037 0.00 0.00 40.38 4.61
270 271 7.771183 TGGAGATTTTATCTGTTTAATGCACC 58.229 34.615 0.00 0.00 40.38 5.01
333 337 6.363088 CGTTGTGCAAAAATCACAGAATATGT 59.637 34.615 0.00 0.00 44.18 2.29
340 344 2.909076 GCGTTGTGCAAAAATCACAG 57.091 45.000 0.00 0.00 44.18 3.66
405 409 9.685828 GTTATTTAAAGCAGTCATGTTGGTAAA 57.314 29.630 5.38 4.65 0.00 2.01
406 410 9.073475 AGTTATTTAAAGCAGTCATGTTGGTAA 57.927 29.630 5.38 0.00 0.00 2.85
407 411 8.630054 AGTTATTTAAAGCAGTCATGTTGGTA 57.370 30.769 5.38 0.00 0.00 3.25
443 447 9.575783 TTGAAACTTAGTGGAATTTGTAAACAC 57.424 29.630 0.00 0.00 0.00 3.32
451 455 9.546428 CCATTCTTTTGAAACTTAGTGGAATTT 57.454 29.630 0.00 0.00 42.31 1.82
458 462 6.959639 TGAGCCATTCTTTTGAAACTTAGT 57.040 33.333 0.00 0.00 42.31 2.24
511 519 2.510768 ATAGCCGAGCTTTAGAACCG 57.489 50.000 3.71 0.00 40.44 4.44
513 521 4.548494 GGAGTATAGCCGAGCTTTAGAAC 58.452 47.826 3.71 0.00 40.44 3.01
522 530 2.279935 ACAGAGGGAGTATAGCCGAG 57.720 55.000 0.00 0.00 0.00 4.63
636 644 1.872952 CGTGAAGCCATGTCAAACTGA 59.127 47.619 0.00 0.00 0.00 3.41
667 679 6.765036 TCAATTGAATTTGCTTTGGTTTAGCA 59.235 30.769 5.45 0.00 46.26 3.49
668 680 7.188468 TCAATTGAATTTGCTTTGGTTTAGC 57.812 32.000 5.45 0.00 39.10 3.09
670 682 7.554118 TGGTTCAATTGAATTTGCTTTGGTTTA 59.446 29.630 23.05 0.00 36.33 2.01
671 683 6.376581 TGGTTCAATTGAATTTGCTTTGGTTT 59.623 30.769 23.05 0.00 36.33 3.27
672 684 5.884792 TGGTTCAATTGAATTTGCTTTGGTT 59.115 32.000 23.05 0.00 36.33 3.67
673 685 5.296531 GTGGTTCAATTGAATTTGCTTTGGT 59.703 36.000 23.05 0.00 36.33 3.67
674 686 5.296283 TGTGGTTCAATTGAATTTGCTTTGG 59.704 36.000 23.05 0.00 36.33 3.28
675 687 6.360844 TGTGGTTCAATTGAATTTGCTTTG 57.639 33.333 23.05 0.00 36.33 2.77
729 741 4.980805 TCCGTGCGGTGTTGAGCC 62.981 66.667 10.60 0.00 36.47 4.70
796 808 3.273351 TGATATCTAGGAGGAGGGATGGG 59.727 52.174 3.98 0.00 0.00 4.00
817 840 2.025441 CCGTTGCGGTGTGGTTTG 59.975 61.111 0.00 0.00 42.73 2.93
938 967 2.485814 GCGCTATCCAATCCAATCTTCC 59.514 50.000 0.00 0.00 0.00 3.46
996 1028 4.547367 GGCGGGTTCCTCATCGGG 62.547 72.222 0.00 0.00 0.00 5.14
1468 1509 3.469863 AAGGGAGCACCGAAACGCA 62.470 57.895 0.00 0.00 46.96 5.24
1469 1510 2.668550 AAGGGAGCACCGAAACGC 60.669 61.111 0.00 0.00 46.96 4.84
1510 1551 4.421948 CATACGAGCGAGGTTAACTCTTT 58.578 43.478 5.42 0.00 44.33 2.52
1547 1588 3.119459 TCATACTGAAGTCCGAAGTCTGC 60.119 47.826 0.00 0.00 0.00 4.26
1698 1739 4.092237 TGCGTAAATCAATGAAGTACACGG 59.908 41.667 0.00 0.00 0.00 4.94
1726 1767 2.380084 TGGCTTAAAGTCCTAGCGTG 57.620 50.000 0.00 0.00 35.77 5.34
1740 1781 1.474330 GGGGTTTCAATCGATGGCTT 58.526 50.000 0.00 0.00 0.00 4.35
1756 1797 4.829492 GTGATTATCTCATTTTGGAGGGGG 59.171 45.833 0.00 0.00 35.97 5.40
1761 1802 7.053498 TGGATTCGTGATTATCTCATTTTGGA 58.947 34.615 0.00 0.00 35.97 3.53
1791 1832 5.947566 ACCCACTAATTACCATTGTAACCAC 59.052 40.000 0.00 0.00 39.66 4.16
1837 1878 3.322828 GCGGATCCTAACACCCTATAACA 59.677 47.826 10.75 0.00 0.00 2.41
1958 1999 6.054295 TGCTGCCAGAAAACAACAAAATAAT 58.946 32.000 0.00 0.00 0.00 1.28
1977 2018 4.627611 ATGAGTATGTCACATTTGCTGC 57.372 40.909 0.00 0.00 38.28 5.25
2015 2056 5.796424 ACACCTCATCAGAAAAATTGCTT 57.204 34.783 0.00 0.00 0.00 3.91
2174 2268 6.942532 TGCTAGTTGTTTCTCAGTTTCATT 57.057 33.333 0.00 0.00 0.00 2.57
2433 2527 6.934645 AGACGAACTATTCAGAAATTTGACCA 59.065 34.615 0.00 0.00 0.00 4.02
2446 2540 5.867716 TCTGCAAGGTAAAGACGAACTATTC 59.132 40.000 0.00 0.00 0.00 1.75
2455 2549 5.453567 ACCATTTTCTGCAAGGTAAAGAC 57.546 39.130 0.00 0.00 0.00 3.01
2459 2553 6.071616 GGACATAACCATTTTCTGCAAGGTAA 60.072 38.462 0.00 0.00 31.10 2.85
2529 2623 2.039480 TCTCCTGAATTCTTGCACTGCT 59.961 45.455 7.05 0.00 0.00 4.24
2655 2756 2.913617 CTGTTCTAGGGGGAAAAGACCT 59.086 50.000 0.00 0.00 33.60 3.85
2748 2932 5.601662 ACCCAGACGATAATGATACAACTG 58.398 41.667 0.00 0.00 0.00 3.16
2757 2941 7.222805 GCATGTATGTATACCCAGACGATAATG 59.777 40.741 0.00 0.00 32.33 1.90
2761 2948 4.081642 GGCATGTATGTATACCCAGACGAT 60.082 45.833 0.00 0.00 32.33 3.73
3036 3223 1.429463 CTCACTTGGTACGAGCAACC 58.571 55.000 0.00 0.00 37.53 3.77
3178 3551 2.491693 CCACACCGGCAATGTAAATTCT 59.508 45.455 0.00 0.00 0.00 2.40
3212 3586 7.073265 TGCAAGCTTAAACATTTAACTACGAC 58.927 34.615 0.00 0.00 0.00 4.34
3328 3702 1.593933 TGTCCTACAAAACGTGTTCGC 59.406 47.619 0.00 0.00 41.98 4.70
3357 3731 1.255342 CGTGTGGATGTAAATCGCGAG 59.745 52.381 16.66 0.00 34.64 5.03
3358 3732 1.135344 TCGTGTGGATGTAAATCGCGA 60.135 47.619 13.09 13.09 38.39 5.87
3359 3733 1.273688 TCGTGTGGATGTAAATCGCG 58.726 50.000 0.00 0.00 0.00 5.87
3360 3734 3.124636 AGTTTCGTGTGGATGTAAATCGC 59.875 43.478 0.00 0.00 0.00 4.58
3361 3735 4.921470 AGTTTCGTGTGGATGTAAATCG 57.079 40.909 0.00 0.00 0.00 3.34
3362 3736 5.997385 ACAAGTTTCGTGTGGATGTAAATC 58.003 37.500 0.00 0.00 0.00 2.17
3363 3737 6.483974 TGTACAAGTTTCGTGTGGATGTAAAT 59.516 34.615 0.00 0.00 0.00 1.40
3364 3738 5.816258 TGTACAAGTTTCGTGTGGATGTAAA 59.184 36.000 0.00 0.00 0.00 2.01
3365 3739 5.358090 TGTACAAGTTTCGTGTGGATGTAA 58.642 37.500 0.00 0.00 0.00 2.41
3366 3740 4.946445 TGTACAAGTTTCGTGTGGATGTA 58.054 39.130 0.00 0.00 0.00 2.29
3367 3741 3.799366 TGTACAAGTTTCGTGTGGATGT 58.201 40.909 0.00 0.00 0.00 3.06
3368 3742 5.049749 TCAATGTACAAGTTTCGTGTGGATG 60.050 40.000 0.00 0.00 0.00 3.51
3369 3743 5.060506 TCAATGTACAAGTTTCGTGTGGAT 58.939 37.500 0.00 0.00 0.00 3.41
3370 3744 4.443621 TCAATGTACAAGTTTCGTGTGGA 58.556 39.130 0.00 0.00 0.00 4.02
3371 3745 4.804608 TCAATGTACAAGTTTCGTGTGG 57.195 40.909 0.00 0.00 0.00 4.17
3372 3746 6.198687 ACAATCAATGTACAAGTTTCGTGTG 58.801 36.000 0.00 0.00 41.63 3.82
3397 3771 9.502091 GTCAAATGATTACAGCCCAGTAATATA 57.498 33.333 6.75 1.91 42.93 0.86
3398 3772 7.448469 GGTCAAATGATTACAGCCCAGTAATAT 59.552 37.037 6.75 1.27 42.93 1.28
3399 3773 6.770785 GGTCAAATGATTACAGCCCAGTAATA 59.229 38.462 6.75 0.00 42.93 0.98
3441 3815 6.969043 TCCCCACTGACTTTCAATTACATAT 58.031 36.000 0.00 0.00 0.00 1.78
3442 3816 6.381498 TCCCCACTGACTTTCAATTACATA 57.619 37.500 0.00 0.00 0.00 2.29
3443 3817 5.255397 TCCCCACTGACTTTCAATTACAT 57.745 39.130 0.00 0.00 0.00 2.29
3449 3853 2.348472 AGGATCCCCACTGACTTTCAA 58.652 47.619 8.55 0.00 33.88 2.69
3459 3864 0.541863 ACACGATCAAGGATCCCCAC 59.458 55.000 8.55 0.00 35.83 4.61
3467 3872 3.119316 AGCTCTACAAGACACGATCAAGG 60.119 47.826 0.00 0.00 0.00 3.61
3471 3876 4.098055 TCAAGCTCTACAAGACACGATC 57.902 45.455 0.00 0.00 0.00 3.69
3517 3947 8.481314 ACTTTCTTGTCAGCATTCTATCTATCA 58.519 33.333 0.00 0.00 0.00 2.15
3535 3965 2.260844 TCTGCCACTGGACTTTCTTG 57.739 50.000 0.00 0.00 0.00 3.02
3540 3970 3.228188 TCAAAATCTGCCACTGGACTT 57.772 42.857 0.00 0.00 0.00 3.01
3541 3971 2.957402 TCAAAATCTGCCACTGGACT 57.043 45.000 0.00 0.00 0.00 3.85
3542 3972 3.367703 CCAATCAAAATCTGCCACTGGAC 60.368 47.826 0.00 0.00 0.00 4.02
3543 3973 2.827322 CCAATCAAAATCTGCCACTGGA 59.173 45.455 0.00 0.00 0.00 3.86
3544 3974 2.827322 TCCAATCAAAATCTGCCACTGG 59.173 45.455 0.00 0.00 0.00 4.00
3545 3975 4.524316 TTCCAATCAAAATCTGCCACTG 57.476 40.909 0.00 0.00 0.00 3.66
3546 3976 5.549742 TTTTCCAATCAAAATCTGCCACT 57.450 34.783 0.00 0.00 0.00 4.00
3547 3977 6.413018 GATTTTCCAATCAAAATCTGCCAC 57.587 37.500 10.18 0.00 44.38 5.01
3553 3983 6.401367 CGTGGCAAGATTTTCCAATCAAAATC 60.401 38.462 9.64 9.64 46.58 2.17
3554 3984 5.409214 CGTGGCAAGATTTTCCAATCAAAAT 59.591 36.000 0.00 0.00 41.37 1.82
3555 3985 4.749099 CGTGGCAAGATTTTCCAATCAAAA 59.251 37.500 0.00 0.00 41.37 2.44
3556 3986 4.038522 TCGTGGCAAGATTTTCCAATCAAA 59.961 37.500 0.00 0.00 41.37 2.69
3557 3987 3.571828 TCGTGGCAAGATTTTCCAATCAA 59.428 39.130 0.00 0.00 41.37 2.57
3558 3988 3.153130 TCGTGGCAAGATTTTCCAATCA 58.847 40.909 0.00 0.00 41.37 2.57
3559 3989 3.848272 TCGTGGCAAGATTTTCCAATC 57.152 42.857 0.00 0.00 39.45 2.67
3665 4095 2.564947 GTGGGTTGGATGGTTTTGCATA 59.435 45.455 0.00 0.00 0.00 3.14
3709 4141 9.153952 GAAACTTGTTTGTTTGTTGTTTCTTTC 57.846 29.630 3.27 0.00 39.86 2.62
3911 4345 2.871427 GATTGACATCGCCGGCGTC 61.871 63.158 44.16 34.52 40.74 5.19
3953 4387 3.214845 ATACTCGCGGACCGGGAC 61.215 66.667 27.89 4.68 43.39 4.46
4442 4885 3.432051 GATCCGCGACCTGGTCCTG 62.432 68.421 20.68 12.85 0.00 3.86
4692 5138 1.543429 CGCATCCCTCCCAAATCCTAC 60.543 57.143 0.00 0.00 0.00 3.18
4971 5422 3.130340 TGCAAGTCCTTGACCAAAGAAAC 59.870 43.478 11.12 0.00 42.93 2.78
4985 5436 0.238553 GAACGCCTTTCTGCAAGTCC 59.761 55.000 0.00 0.00 33.76 3.85
5056 5518 5.295950 AGAGATCTGTATCAATTTGCTCGG 58.704 41.667 0.00 0.00 34.28 4.63
5104 5566 1.014804 AGTTGGCCCCCATTTATCCA 58.985 50.000 0.00 0.00 31.53 3.41
5896 6358 0.811281 GAAGGCTTTAGGCGCATTGT 59.189 50.000 10.83 0.00 46.23 2.71
5998 6460 3.074412 CTCGTGCCCTTGTTTCTAATGT 58.926 45.455 0.00 0.00 0.00 2.71
6304 6766 3.456277 AGAAAGTGTTCCAGTTCCTCTGT 59.544 43.478 0.00 0.00 42.19 3.41
6647 7109 5.587443 ACCACTGTAACCTTTGTTGTACTTC 59.413 40.000 0.00 0.00 35.87 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.