Multiple sequence alignment - TraesCS6A01G250400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G250400 chr6A 100.000 3342 0 0 1 3342 464618794 464622135 0.000000 6172.0
1 TraesCS6A01G250400 chr6D 92.770 3029 123 37 383 3342 325773039 325776040 0.000000 4292.0
2 TraesCS6A01G250400 chr6B 91.718 2113 101 31 568 2634 497021358 497019274 0.000000 2865.0
3 TraesCS6A01G250400 chr3B 93.023 43 3 0 2885 2927 489289506 489289548 0.000003 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G250400 chr6A 464618794 464622135 3341 False 6172 6172 100.000 1 3342 1 chr6A.!!$F1 3341
1 TraesCS6A01G250400 chr6D 325773039 325776040 3001 False 4292 4292 92.770 383 3342 1 chr6D.!!$F1 2959
2 TraesCS6A01G250400 chr6B 497019274 497021358 2084 True 2865 2865 91.718 568 2634 1 chr6B.!!$R1 2066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.039617 CATCGCCGTTTCAGCCAAAA 60.040 50.0 0.0 0.0 0.00 2.44 F
276 277 0.103937 CGTTTCAGCCAAAAGCCCAA 59.896 50.0 0.0 0.0 45.47 4.12 F
280 281 0.467804 TCAGCCAAAAGCCCAAAACC 59.532 50.0 0.0 0.0 45.47 3.27 F
281 282 0.469494 CAGCCAAAAGCCCAAAACCT 59.531 50.0 0.0 0.0 45.47 3.50 F
1771 1797 0.863799 CGCACGCCGTACTATCTCTA 59.136 55.0 0.0 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1429 1.141665 CCTGCCGATCGTGTGATGA 59.858 57.895 15.09 0.0 34.09 2.92 R
1854 1888 2.441901 CCTCCCGCTGCTCTCTCT 60.442 66.667 0.00 0.0 0.00 3.10 R
2186 2223 4.767255 GCCCTGCACCGTCCTCAG 62.767 72.222 0.00 0.0 0.00 3.35 R
2308 2345 1.137825 CCTGAGCGACTCGAAGGAC 59.862 63.158 1.63 0.0 32.35 3.85 R
2898 2958 0.839277 TCCGTGGGCATGAATCAGAT 59.161 50.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.948851 GGAAACGAAAAGTGTCAGTTCC 58.051 45.455 0.00 0.00 38.88 3.62
30 31 3.375922 GGAAACGAAAAGTGTCAGTTCCA 59.624 43.478 0.00 0.00 38.88 3.53
31 32 4.036380 GGAAACGAAAAGTGTCAGTTCCAT 59.964 41.667 0.00 0.00 38.88 3.41
32 33 4.813296 AACGAAAAGTGTCAGTTCCATC 57.187 40.909 0.00 0.00 0.00 3.51
33 34 3.139077 ACGAAAAGTGTCAGTTCCATCC 58.861 45.455 0.00 0.00 0.00 3.51
34 35 2.157668 CGAAAAGTGTCAGTTCCATCCG 59.842 50.000 0.00 0.00 0.00 4.18
35 36 3.399330 GAAAAGTGTCAGTTCCATCCGA 58.601 45.455 0.00 0.00 0.00 4.55
36 37 3.485463 AAAGTGTCAGTTCCATCCGAA 57.515 42.857 0.00 0.00 0.00 4.30
37 38 3.485463 AAGTGTCAGTTCCATCCGAAA 57.515 42.857 0.00 0.00 30.39 3.46
38 39 3.485463 AGTGTCAGTTCCATCCGAAAA 57.515 42.857 0.00 0.00 30.39 2.29
39 40 4.021102 AGTGTCAGTTCCATCCGAAAAT 57.979 40.909 0.00 0.00 30.39 1.82
40 41 3.753272 AGTGTCAGTTCCATCCGAAAATG 59.247 43.478 0.00 0.00 30.39 2.32
41 42 2.487762 TGTCAGTTCCATCCGAAAATGC 59.512 45.455 0.00 0.00 30.39 3.56
42 43 2.091541 TCAGTTCCATCCGAAAATGCC 58.908 47.619 0.00 0.00 30.39 4.40
43 44 1.094785 AGTTCCATCCGAAAATGCCG 58.905 50.000 0.00 0.00 30.39 5.69
44 45 0.808755 GTTCCATCCGAAAATGCCGT 59.191 50.000 0.00 0.00 30.39 5.68
45 46 1.201414 GTTCCATCCGAAAATGCCGTT 59.799 47.619 0.00 0.00 30.39 4.44
46 47 1.540267 TCCATCCGAAAATGCCGTTT 58.460 45.000 0.00 0.00 0.00 3.60
47 48 1.470890 TCCATCCGAAAATGCCGTTTC 59.529 47.619 0.00 0.25 34.71 2.78
48 49 1.201181 CCATCCGAAAATGCCGTTTCA 59.799 47.619 9.20 0.00 37.35 2.69
49 50 2.159254 CCATCCGAAAATGCCGTTTCAT 60.159 45.455 9.20 0.00 37.35 2.57
50 51 3.510719 CATCCGAAAATGCCGTTTCATT 58.489 40.909 9.20 0.00 37.35 2.57
51 52 3.651803 TCCGAAAATGCCGTTTCATTT 57.348 38.095 9.20 0.00 45.54 2.32
60 61 7.826260 AAATGCCGTTTCATTTTTATACCTG 57.174 32.000 0.00 0.00 42.21 4.00
61 62 5.968528 TGCCGTTTCATTTTTATACCTGT 57.031 34.783 0.00 0.00 0.00 4.00
62 63 6.334102 TGCCGTTTCATTTTTATACCTGTT 57.666 33.333 0.00 0.00 0.00 3.16
63 64 6.750148 TGCCGTTTCATTTTTATACCTGTTT 58.250 32.000 0.00 0.00 0.00 2.83
64 65 7.210873 TGCCGTTTCATTTTTATACCTGTTTT 58.789 30.769 0.00 0.00 0.00 2.43
65 66 7.382759 TGCCGTTTCATTTTTATACCTGTTTTC 59.617 33.333 0.00 0.00 0.00 2.29
66 67 7.382759 GCCGTTTCATTTTTATACCTGTTTTCA 59.617 33.333 0.00 0.00 0.00 2.69
67 68 8.696175 CCGTTTCATTTTTATACCTGTTTTCAC 58.304 33.333 0.00 0.00 0.00 3.18
68 69 8.414173 CGTTTCATTTTTATACCTGTTTTCACG 58.586 33.333 0.00 0.00 0.00 4.35
69 70 9.240159 GTTTCATTTTTATACCTGTTTTCACGT 57.760 29.630 0.00 0.00 0.00 4.49
80 81 7.090953 ACCTGTTTTCACGTAAAAAGATTCA 57.909 32.000 0.00 0.00 38.76 2.57
81 82 7.712797 ACCTGTTTTCACGTAAAAAGATTCAT 58.287 30.769 0.00 0.00 38.76 2.57
82 83 8.194769 ACCTGTTTTCACGTAAAAAGATTCATT 58.805 29.630 0.00 0.00 38.76 2.57
83 84 9.030301 CCTGTTTTCACGTAAAAAGATTCATTT 57.970 29.630 0.00 0.00 38.76 2.32
92 93 9.894439 ACGTAAAAAGATTCATTTTTGTTTTCG 57.106 25.926 5.07 8.82 41.29 3.46
93 94 9.894439 CGTAAAAAGATTCATTTTTGTTTTCGT 57.106 25.926 5.07 0.00 41.29 3.85
98 99 8.599876 AAGATTCATTTTTGTTTTCGTTTTGC 57.400 26.923 0.00 0.00 0.00 3.68
99 100 7.746929 AGATTCATTTTTGTTTTCGTTTTGCA 58.253 26.923 0.00 0.00 0.00 4.08
100 101 8.233190 AGATTCATTTTTGTTTTCGTTTTGCAA 58.767 25.926 0.00 0.00 0.00 4.08
101 102 8.733857 ATTCATTTTTGTTTTCGTTTTGCAAA 57.266 23.077 8.05 8.05 0.00 3.68
102 103 8.733857 TTCATTTTTGTTTTCGTTTTGCAAAT 57.266 23.077 13.65 0.00 0.00 2.32
103 104 8.733857 TCATTTTTGTTTTCGTTTTGCAAATT 57.266 23.077 13.65 0.00 0.00 1.82
104 105 8.844690 TCATTTTTGTTTTCGTTTTGCAAATTC 58.155 25.926 13.65 8.59 0.00 2.17
105 106 8.848528 CATTTTTGTTTTCGTTTTGCAAATTCT 58.151 25.926 13.65 0.00 0.00 2.40
106 107 8.428459 TTTTTGTTTTCGTTTTGCAAATTCTC 57.572 26.923 13.65 3.71 0.00 2.87
107 108 6.712241 TTGTTTTCGTTTTGCAAATTCTCA 57.288 29.167 13.65 4.10 0.00 3.27
108 109 6.900568 TGTTTTCGTTTTGCAAATTCTCAT 57.099 29.167 13.65 0.00 0.00 2.90
109 110 7.301068 TGTTTTCGTTTTGCAAATTCTCATT 57.699 28.000 13.65 0.00 0.00 2.57
110 111 7.746929 TGTTTTCGTTTTGCAAATTCTCATTT 58.253 26.923 13.65 0.00 32.36 2.32
111 112 8.233190 TGTTTTCGTTTTGCAAATTCTCATTTT 58.767 25.926 13.65 0.00 29.41 1.82
112 113 8.724153 GTTTTCGTTTTGCAAATTCTCATTTTC 58.276 29.630 13.65 0.00 29.41 2.29
113 114 7.531280 TTCGTTTTGCAAATTCTCATTTTCA 57.469 28.000 13.65 0.00 29.41 2.69
114 115 7.712264 TCGTTTTGCAAATTCTCATTTTCAT 57.288 28.000 13.65 0.00 29.41 2.57
115 116 8.140677 TCGTTTTGCAAATTCTCATTTTCATT 57.859 26.923 13.65 0.00 29.41 2.57
116 117 8.610896 TCGTTTTGCAAATTCTCATTTTCATTT 58.389 25.926 13.65 0.00 29.41 2.32
117 118 9.224058 CGTTTTGCAAATTCTCATTTTCATTTT 57.776 25.926 13.65 0.00 29.41 1.82
147 148 9.838975 AATTTTCATTTTTGTTTCCACACTTTC 57.161 25.926 0.00 0.00 30.32 2.62
148 149 8.614469 TTTTCATTTTTGTTTCCACACTTTCT 57.386 26.923 0.00 0.00 30.32 2.52
149 150 7.826260 TTCATTTTTGTTTCCACACTTTCTC 57.174 32.000 0.00 0.00 30.32 2.87
150 151 7.169158 TCATTTTTGTTTCCACACTTTCTCT 57.831 32.000 0.00 0.00 30.32 3.10
151 152 7.610865 TCATTTTTGTTTCCACACTTTCTCTT 58.389 30.769 0.00 0.00 30.32 2.85
152 153 8.093927 TCATTTTTGTTTCCACACTTTCTCTTT 58.906 29.630 0.00 0.00 30.32 2.52
153 154 7.650834 TTTTTGTTTCCACACTTTCTCTTTG 57.349 32.000 0.00 0.00 30.32 2.77
154 155 5.975693 TTGTTTCCACACTTTCTCTTTGT 57.024 34.783 0.00 0.00 30.32 2.83
155 156 5.975693 TGTTTCCACACTTTCTCTTTGTT 57.024 34.783 0.00 0.00 0.00 2.83
156 157 6.339587 TGTTTCCACACTTTCTCTTTGTTT 57.660 33.333 0.00 0.00 0.00 2.83
157 158 6.386654 TGTTTCCACACTTTCTCTTTGTTTC 58.613 36.000 0.00 0.00 0.00 2.78
158 159 6.208599 TGTTTCCACACTTTCTCTTTGTTTCT 59.791 34.615 0.00 0.00 0.00 2.52
159 160 5.818136 TCCACACTTTCTCTTTGTTTCTG 57.182 39.130 0.00 0.00 0.00 3.02
160 161 5.253330 TCCACACTTTCTCTTTGTTTCTGT 58.747 37.500 0.00 0.00 0.00 3.41
161 162 5.710099 TCCACACTTTCTCTTTGTTTCTGTT 59.290 36.000 0.00 0.00 0.00 3.16
162 163 6.208599 TCCACACTTTCTCTTTGTTTCTGTTT 59.791 34.615 0.00 0.00 0.00 2.83
163 164 6.868339 CCACACTTTCTCTTTGTTTCTGTTTT 59.132 34.615 0.00 0.00 0.00 2.43
164 165 7.384932 CCACACTTTCTCTTTGTTTCTGTTTTT 59.615 33.333 0.00 0.00 0.00 1.94
165 166 8.427774 CACACTTTCTCTTTGTTTCTGTTTTTC 58.572 33.333 0.00 0.00 0.00 2.29
166 167 8.360390 ACACTTTCTCTTTGTTTCTGTTTTTCT 58.640 29.630 0.00 0.00 0.00 2.52
167 168 9.196552 CACTTTCTCTTTGTTTCTGTTTTTCTT 57.803 29.630 0.00 0.00 0.00 2.52
168 169 9.411801 ACTTTCTCTTTGTTTCTGTTTTTCTTC 57.588 29.630 0.00 0.00 0.00 2.87
169 170 8.447787 TTTCTCTTTGTTTCTGTTTTTCTTCG 57.552 30.769 0.00 0.00 0.00 3.79
170 171 6.551736 TCTCTTTGTTTCTGTTTTTCTTCGG 58.448 36.000 0.00 0.00 0.00 4.30
171 172 6.373216 TCTCTTTGTTTCTGTTTTTCTTCGGA 59.627 34.615 0.00 0.00 0.00 4.55
172 173 6.551736 TCTTTGTTTCTGTTTTTCTTCGGAG 58.448 36.000 0.00 0.00 0.00 4.63
173 174 6.373216 TCTTTGTTTCTGTTTTTCTTCGGAGA 59.627 34.615 0.00 0.00 0.00 3.71
174 175 6.503589 TTGTTTCTGTTTTTCTTCGGAGAA 57.496 33.333 0.70 0.70 45.90 2.87
175 176 6.119144 TGTTTCTGTTTTTCTTCGGAGAAG 57.881 37.500 6.20 3.56 45.90 2.85
176 177 5.646360 TGTTTCTGTTTTTCTTCGGAGAAGT 59.354 36.000 6.20 0.00 45.90 3.01
177 178 5.734855 TTCTGTTTTTCTTCGGAGAAGTG 57.265 39.130 6.20 0.00 45.90 3.16
178 179 5.018539 TCTGTTTTTCTTCGGAGAAGTGA 57.981 39.130 6.20 0.00 45.90 3.41
179 180 5.424757 TCTGTTTTTCTTCGGAGAAGTGAA 58.575 37.500 6.20 0.93 45.90 3.18
180 181 5.878116 TCTGTTTTTCTTCGGAGAAGTGAAA 59.122 36.000 6.20 2.01 45.90 2.69
181 182 6.373216 TCTGTTTTTCTTCGGAGAAGTGAAAA 59.627 34.615 6.20 1.64 45.90 2.29
182 183 6.551736 TGTTTTTCTTCGGAGAAGTGAAAAG 58.448 36.000 6.20 0.00 45.90 2.27
183 184 6.150474 TGTTTTTCTTCGGAGAAGTGAAAAGT 59.850 34.615 6.20 0.00 45.90 2.66
184 185 6.753107 TTTTCTTCGGAGAAGTGAAAAGTT 57.247 33.333 6.20 0.00 45.90 2.66
185 186 6.753107 TTTCTTCGGAGAAGTGAAAAGTTT 57.247 33.333 6.20 0.00 45.90 2.66
186 187 5.986004 TCTTCGGAGAAGTGAAAAGTTTC 57.014 39.130 9.29 0.00 45.90 2.78
187 188 4.506654 TCTTCGGAGAAGTGAAAAGTTTCG 59.493 41.667 9.29 0.00 45.90 3.46
188 189 3.128349 TCGGAGAAGTGAAAAGTTTCGG 58.872 45.455 0.00 0.00 40.01 4.30
189 190 2.349532 CGGAGAAGTGAAAAGTTTCGGC 60.350 50.000 0.00 0.00 40.01 5.54
190 191 2.879026 GGAGAAGTGAAAAGTTTCGGCT 59.121 45.455 0.00 0.00 40.01 5.52
191 192 3.058846 GGAGAAGTGAAAAGTTTCGGCTC 60.059 47.826 0.00 0.00 40.01 4.70
192 193 3.809905 AGAAGTGAAAAGTTTCGGCTCT 58.190 40.909 0.00 0.00 40.01 4.09
193 194 3.561725 AGAAGTGAAAAGTTTCGGCTCTG 59.438 43.478 0.00 0.00 40.01 3.35
194 195 2.919228 AGTGAAAAGTTTCGGCTCTGT 58.081 42.857 0.00 0.00 40.01 3.41
195 196 3.279434 AGTGAAAAGTTTCGGCTCTGTT 58.721 40.909 0.00 0.00 40.01 3.16
196 197 3.694566 AGTGAAAAGTTTCGGCTCTGTTT 59.305 39.130 0.00 0.00 40.01 2.83
197 198 4.157840 AGTGAAAAGTTTCGGCTCTGTTTT 59.842 37.500 0.00 0.00 40.01 2.43
198 199 4.499399 GTGAAAAGTTTCGGCTCTGTTTTC 59.501 41.667 0.00 0.00 40.01 2.29
199 200 4.156922 TGAAAAGTTTCGGCTCTGTTTTCA 59.843 37.500 4.39 4.39 40.04 2.69
200 201 4.918810 AAAGTTTCGGCTCTGTTTTCAT 57.081 36.364 0.00 0.00 0.00 2.57
201 202 4.489679 AAGTTTCGGCTCTGTTTTCATC 57.510 40.909 0.00 0.00 0.00 2.92
202 203 3.744660 AGTTTCGGCTCTGTTTTCATCT 58.255 40.909 0.00 0.00 0.00 2.90
203 204 3.748568 AGTTTCGGCTCTGTTTTCATCTC 59.251 43.478 0.00 0.00 0.00 2.75
204 205 3.685139 TTCGGCTCTGTTTTCATCTCT 57.315 42.857 0.00 0.00 0.00 3.10
205 206 4.801330 TTCGGCTCTGTTTTCATCTCTA 57.199 40.909 0.00 0.00 0.00 2.43
206 207 5.344743 TTCGGCTCTGTTTTCATCTCTAT 57.655 39.130 0.00 0.00 0.00 1.98
207 208 4.686972 TCGGCTCTGTTTTCATCTCTATG 58.313 43.478 0.00 0.00 0.00 2.23
208 209 4.160439 TCGGCTCTGTTTTCATCTCTATGT 59.840 41.667 0.00 0.00 34.50 2.29
209 210 4.872691 CGGCTCTGTTTTCATCTCTATGTT 59.127 41.667 0.00 0.00 34.50 2.71
210 211 5.352569 CGGCTCTGTTTTCATCTCTATGTTT 59.647 40.000 0.00 0.00 34.50 2.83
211 212 6.535150 CGGCTCTGTTTTCATCTCTATGTTTA 59.465 38.462 0.00 0.00 34.50 2.01
212 213 7.464710 CGGCTCTGTTTTCATCTCTATGTTTAC 60.465 40.741 0.00 0.00 34.50 2.01
213 214 7.550906 GGCTCTGTTTTCATCTCTATGTTTACT 59.449 37.037 0.00 0.00 34.50 2.24
214 215 8.940952 GCTCTGTTTTCATCTCTATGTTTACTT 58.059 33.333 0.00 0.00 34.50 2.24
217 218 9.831737 CTGTTTTCATCTCTATGTTTACTTTGG 57.168 33.333 0.00 0.00 34.50 3.28
218 219 9.349713 TGTTTTCATCTCTATGTTTACTTTGGT 57.650 29.630 0.00 0.00 34.50 3.67
219 220 9.827411 GTTTTCATCTCTATGTTTACTTTGGTC 57.173 33.333 0.00 0.00 34.50 4.02
220 221 9.793259 TTTTCATCTCTATGTTTACTTTGGTCT 57.207 29.630 0.00 0.00 34.50 3.85
221 222 9.793259 TTTCATCTCTATGTTTACTTTGGTCTT 57.207 29.630 0.00 0.00 34.50 3.01
222 223 9.436957 TTCATCTCTATGTTTACTTTGGTCTTC 57.563 33.333 0.00 0.00 34.50 2.87
223 224 8.593679 TCATCTCTATGTTTACTTTGGTCTTCA 58.406 33.333 0.00 0.00 34.50 3.02
224 225 9.219603 CATCTCTATGTTTACTTTGGTCTTCAA 57.780 33.333 0.00 0.00 0.00 2.69
225 226 9.793259 ATCTCTATGTTTACTTTGGTCTTCAAA 57.207 29.630 0.00 0.00 42.50 2.69
226 227 9.621629 TCTCTATGTTTACTTTGGTCTTCAAAA 57.378 29.630 0.00 0.00 43.88 2.44
227 228 9.884465 CTCTATGTTTACTTTGGTCTTCAAAAG 57.116 33.333 0.00 0.00 43.88 2.27
228 229 9.621629 TCTATGTTTACTTTGGTCTTCAAAAGA 57.378 29.630 2.38 0.00 43.88 2.52
229 230 9.884465 CTATGTTTACTTTGGTCTTCAAAAGAG 57.116 33.333 2.38 0.00 43.88 2.85
243 244 9.248291 GTCTTCAAAAGAGCAATAAATTCAACA 57.752 29.630 0.00 0.00 38.41 3.33
244 245 9.467258 TCTTCAAAAGAGCAATAAATTCAACAG 57.533 29.630 0.00 0.00 32.71 3.16
245 246 9.252962 CTTCAAAAGAGCAATAAATTCAACAGT 57.747 29.630 0.00 0.00 0.00 3.55
246 247 9.598517 TTCAAAAGAGCAATAAATTCAACAGTT 57.401 25.926 0.00 0.00 0.00 3.16
247 248 9.033481 TCAAAAGAGCAATAAATTCAACAGTTG 57.967 29.630 6.99 6.99 0.00 3.16
248 249 8.819974 CAAAAGAGCAATAAATTCAACAGTTGT 58.180 29.630 13.14 0.00 0.00 3.32
249 250 8.947055 AAAGAGCAATAAATTCAACAGTTGTT 57.053 26.923 13.14 3.26 39.12 2.83
250 251 8.579682 AAGAGCAATAAATTCAACAGTTGTTC 57.420 30.769 13.14 0.00 35.83 3.18
251 252 7.147976 AGAGCAATAAATTCAACAGTTGTTCC 58.852 34.615 13.14 0.00 35.83 3.62
252 253 6.815089 AGCAATAAATTCAACAGTTGTTCCA 58.185 32.000 13.14 0.00 35.83 3.53
253 254 7.444299 AGCAATAAATTCAACAGTTGTTCCAT 58.556 30.769 13.14 0.00 35.83 3.41
254 255 7.599998 AGCAATAAATTCAACAGTTGTTCCATC 59.400 33.333 13.14 0.00 35.83 3.51
255 256 7.410728 GCAATAAATTCAACAGTTGTTCCATCG 60.411 37.037 13.14 0.00 35.83 3.84
256 257 3.559238 ATTCAACAGTTGTTCCATCGC 57.441 42.857 13.14 0.00 35.83 4.58
257 258 1.234821 TCAACAGTTGTTCCATCGCC 58.765 50.000 13.14 0.00 35.83 5.54
258 259 0.110238 CAACAGTTGTTCCATCGCCG 60.110 55.000 4.99 0.00 35.83 6.46
259 260 0.534203 AACAGTTGTTCCATCGCCGT 60.534 50.000 0.00 0.00 31.64 5.68
260 261 0.534203 ACAGTTGTTCCATCGCCGTT 60.534 50.000 0.00 0.00 0.00 4.44
261 262 0.591170 CAGTTGTTCCATCGCCGTTT 59.409 50.000 0.00 0.00 0.00 3.60
262 263 0.872388 AGTTGTTCCATCGCCGTTTC 59.128 50.000 0.00 0.00 0.00 2.78
263 264 0.589223 GTTGTTCCATCGCCGTTTCA 59.411 50.000 0.00 0.00 0.00 2.69
264 265 0.871722 TTGTTCCATCGCCGTTTCAG 59.128 50.000 0.00 0.00 0.00 3.02
265 266 1.134694 GTTCCATCGCCGTTTCAGC 59.865 57.895 0.00 0.00 0.00 4.26
266 267 2.038269 TTCCATCGCCGTTTCAGCC 61.038 57.895 0.00 0.00 0.00 4.85
267 268 2.739849 TTCCATCGCCGTTTCAGCCA 62.740 55.000 0.00 0.00 0.00 4.75
268 269 2.331893 CCATCGCCGTTTCAGCCAA 61.332 57.895 0.00 0.00 0.00 4.52
269 270 1.578926 CATCGCCGTTTCAGCCAAA 59.421 52.632 0.00 0.00 0.00 3.28
270 271 0.039617 CATCGCCGTTTCAGCCAAAA 60.040 50.000 0.00 0.00 0.00 2.44
271 272 0.240945 ATCGCCGTTTCAGCCAAAAG 59.759 50.000 0.00 0.00 0.00 2.27
272 273 2.016165 CGCCGTTTCAGCCAAAAGC 61.016 57.895 0.00 0.00 44.25 3.51
273 274 1.664649 GCCGTTTCAGCCAAAAGCC 60.665 57.895 0.00 0.00 45.47 4.35
274 275 1.006220 CCGTTTCAGCCAAAAGCCC 60.006 57.895 0.00 0.00 45.47 5.19
275 276 1.739049 CGTTTCAGCCAAAAGCCCA 59.261 52.632 0.00 0.00 45.47 5.36
276 277 0.103937 CGTTTCAGCCAAAAGCCCAA 59.896 50.000 0.00 0.00 45.47 4.12
277 278 1.472376 CGTTTCAGCCAAAAGCCCAAA 60.472 47.619 0.00 0.00 45.47 3.28
278 279 2.637947 GTTTCAGCCAAAAGCCCAAAA 58.362 42.857 0.00 0.00 45.47 2.44
279 280 2.323968 TTCAGCCAAAAGCCCAAAAC 57.676 45.000 0.00 0.00 45.47 2.43
280 281 0.467804 TCAGCCAAAAGCCCAAAACC 59.532 50.000 0.00 0.00 45.47 3.27
281 282 0.469494 CAGCCAAAAGCCCAAAACCT 59.531 50.000 0.00 0.00 45.47 3.50
282 283 1.691434 CAGCCAAAAGCCCAAAACCTA 59.309 47.619 0.00 0.00 45.47 3.08
283 284 2.302733 CAGCCAAAAGCCCAAAACCTAT 59.697 45.455 0.00 0.00 45.47 2.57
284 285 2.302733 AGCCAAAAGCCCAAAACCTATG 59.697 45.455 0.00 0.00 45.47 2.23
285 286 2.698803 CCAAAAGCCCAAAACCTATGC 58.301 47.619 0.00 0.00 0.00 3.14
286 287 2.302733 CCAAAAGCCCAAAACCTATGCT 59.697 45.455 0.00 0.00 0.00 3.79
287 288 3.244526 CCAAAAGCCCAAAACCTATGCTT 60.245 43.478 0.00 0.00 43.64 3.91
288 289 4.020662 CCAAAAGCCCAAAACCTATGCTTA 60.021 41.667 0.00 0.00 41.12 3.09
289 290 5.170748 CAAAAGCCCAAAACCTATGCTTAG 58.829 41.667 0.00 0.00 41.12 2.18
290 291 2.379005 AGCCCAAAACCTATGCTTAGC 58.621 47.619 0.00 0.00 0.00 3.09
291 292 1.409064 GCCCAAAACCTATGCTTAGCC 59.591 52.381 0.29 0.00 0.00 3.93
292 293 2.733956 CCCAAAACCTATGCTTAGCCA 58.266 47.619 0.29 0.00 0.00 4.75
293 294 3.096092 CCCAAAACCTATGCTTAGCCAA 58.904 45.455 0.29 0.00 0.00 4.52
294 295 3.131046 CCCAAAACCTATGCTTAGCCAAG 59.869 47.826 0.29 0.00 34.66 3.61
295 296 3.763897 CCAAAACCTATGCTTAGCCAAGT 59.236 43.478 0.29 0.00 34.00 3.16
296 297 4.142381 CCAAAACCTATGCTTAGCCAAGTC 60.142 45.833 0.29 0.00 34.00 3.01
297 298 4.576330 AAACCTATGCTTAGCCAAGTCT 57.424 40.909 0.29 0.00 34.00 3.24
298 299 5.693769 AAACCTATGCTTAGCCAAGTCTA 57.306 39.130 0.29 0.00 34.00 2.59
299 300 5.693769 AACCTATGCTTAGCCAAGTCTAA 57.306 39.130 0.29 0.00 34.00 2.10
300 301 5.896073 ACCTATGCTTAGCCAAGTCTAAT 57.104 39.130 0.29 0.00 34.00 1.73
301 302 6.253946 ACCTATGCTTAGCCAAGTCTAATT 57.746 37.500 0.29 0.00 34.00 1.40
302 303 6.292150 ACCTATGCTTAGCCAAGTCTAATTC 58.708 40.000 0.29 0.00 34.00 2.17
303 304 6.126768 ACCTATGCTTAGCCAAGTCTAATTCA 60.127 38.462 0.29 0.00 34.00 2.57
304 305 6.203723 CCTATGCTTAGCCAAGTCTAATTCAC 59.796 42.308 0.29 0.00 34.00 3.18
305 306 4.261801 TGCTTAGCCAAGTCTAATTCACC 58.738 43.478 0.29 0.00 34.00 4.02
306 307 3.628032 GCTTAGCCAAGTCTAATTCACCC 59.372 47.826 0.00 0.00 34.00 4.61
307 308 2.808906 AGCCAAGTCTAATTCACCCC 57.191 50.000 0.00 0.00 0.00 4.95
308 309 2.279173 AGCCAAGTCTAATTCACCCCT 58.721 47.619 0.00 0.00 0.00 4.79
309 310 2.649816 AGCCAAGTCTAATTCACCCCTT 59.350 45.455 0.00 0.00 0.00 3.95
310 311 3.850173 AGCCAAGTCTAATTCACCCCTTA 59.150 43.478 0.00 0.00 0.00 2.69
311 312 4.291249 AGCCAAGTCTAATTCACCCCTTAA 59.709 41.667 0.00 0.00 0.00 1.85
312 313 5.044105 AGCCAAGTCTAATTCACCCCTTAAT 60.044 40.000 0.00 0.00 0.00 1.40
313 314 5.299531 GCCAAGTCTAATTCACCCCTTAATC 59.700 44.000 0.00 0.00 0.00 1.75
314 315 5.828328 CCAAGTCTAATTCACCCCTTAATCC 59.172 44.000 0.00 0.00 0.00 3.01
315 316 5.648330 AGTCTAATTCACCCCTTAATCCC 57.352 43.478 0.00 0.00 0.00 3.85
316 317 5.297799 AGTCTAATTCACCCCTTAATCCCT 58.702 41.667 0.00 0.00 0.00 4.20
317 318 5.736616 AGTCTAATTCACCCCTTAATCCCTT 59.263 40.000 0.00 0.00 0.00 3.95
318 319 6.912561 AGTCTAATTCACCCCTTAATCCCTTA 59.087 38.462 0.00 0.00 0.00 2.69
319 320 7.576649 AGTCTAATTCACCCCTTAATCCCTTAT 59.423 37.037 0.00 0.00 0.00 1.73
320 321 8.887393 GTCTAATTCACCCCTTAATCCCTTATA 58.113 37.037 0.00 0.00 0.00 0.98
321 322 9.468357 TCTAATTCACCCCTTAATCCCTTATAA 57.532 33.333 0.00 0.00 0.00 0.98
324 325 9.601810 AATTCACCCCTTAATCCCTTATAATTC 57.398 33.333 0.00 0.00 0.00 2.17
325 326 7.715267 TCACCCCTTAATCCCTTATAATTCA 57.285 36.000 0.00 0.00 0.00 2.57
326 327 8.300752 TCACCCCTTAATCCCTTATAATTCAT 57.699 34.615 0.00 0.00 0.00 2.57
327 328 8.742437 TCACCCCTTAATCCCTTATAATTCATT 58.258 33.333 0.00 0.00 0.00 2.57
328 329 8.806146 CACCCCTTAATCCCTTATAATTCATTG 58.194 37.037 0.00 0.00 0.00 2.82
329 330 8.519597 ACCCCTTAATCCCTTATAATTCATTGT 58.480 33.333 0.00 0.00 0.00 2.71
330 331 8.806146 CCCCTTAATCCCTTATAATTCATTGTG 58.194 37.037 0.00 0.00 0.00 3.33
331 332 9.586732 CCCTTAATCCCTTATAATTCATTGTGA 57.413 33.333 0.00 0.00 0.00 3.58
348 349 9.868277 TTCATTGTGAAATTTAACTGTGAACTT 57.132 25.926 16.12 0.00 32.71 2.66
353 354 9.959749 TGTGAAATTTAACTGTGAACTTATTCC 57.040 29.630 7.22 0.00 33.49 3.01
363 364 8.530269 ACTGTGAACTTATTCCTAAAACTACG 57.470 34.615 0.00 0.00 33.49 3.51
364 365 7.117379 ACTGTGAACTTATTCCTAAAACTACGC 59.883 37.037 0.00 0.00 33.49 4.42
365 366 6.369615 TGTGAACTTATTCCTAAAACTACGCC 59.630 38.462 0.00 0.00 33.49 5.68
366 367 6.369615 GTGAACTTATTCCTAAAACTACGCCA 59.630 38.462 0.00 0.00 33.49 5.69
367 368 6.369615 TGAACTTATTCCTAAAACTACGCCAC 59.630 38.462 0.00 0.00 33.49 5.01
368 369 5.797051 ACTTATTCCTAAAACTACGCCACA 58.203 37.500 0.00 0.00 0.00 4.17
369 370 5.640783 ACTTATTCCTAAAACTACGCCACAC 59.359 40.000 0.00 0.00 0.00 3.82
370 371 3.756933 TTCCTAAAACTACGCCACACT 57.243 42.857 0.00 0.00 0.00 3.55
371 372 4.870123 TTCCTAAAACTACGCCACACTA 57.130 40.909 0.00 0.00 0.00 2.74
372 373 4.178545 TCCTAAAACTACGCCACACTAC 57.821 45.455 0.00 0.00 0.00 2.73
373 374 3.573538 TCCTAAAACTACGCCACACTACA 59.426 43.478 0.00 0.00 0.00 2.74
374 375 3.924686 CCTAAAACTACGCCACACTACAG 59.075 47.826 0.00 0.00 0.00 2.74
375 376 2.450609 AAACTACGCCACACTACAGG 57.549 50.000 0.00 0.00 0.00 4.00
376 377 1.624336 AACTACGCCACACTACAGGA 58.376 50.000 0.00 0.00 0.00 3.86
377 378 1.624336 ACTACGCCACACTACAGGAA 58.376 50.000 0.00 0.00 0.00 3.36
378 379 1.544691 ACTACGCCACACTACAGGAAG 59.455 52.381 0.00 0.00 0.00 3.46
379 380 1.816835 CTACGCCACACTACAGGAAGA 59.183 52.381 0.00 0.00 0.00 2.87
380 381 1.267121 ACGCCACACTACAGGAAGAT 58.733 50.000 0.00 0.00 0.00 2.40
381 382 1.204941 ACGCCACACTACAGGAAGATC 59.795 52.381 0.00 0.00 0.00 2.75
389 390 5.744345 CACACTACAGGAAGATCGTATTGTC 59.256 44.000 1.72 0.00 29.63 3.18
398 399 6.187797 GAAGATCGTATTGTCTTCGCTTAC 57.812 41.667 0.00 0.00 40.44 2.34
399 400 4.280461 AGATCGTATTGTCTTCGCTTACG 58.720 43.478 0.00 0.00 42.01 3.18
412 414 1.208358 CTTACGAGTGCGGACGTCA 59.792 57.895 18.91 0.00 42.61 4.35
419 421 1.442017 GTGCGGACGTCATTTTGCC 60.442 57.895 18.91 0.00 0.00 4.52
422 424 1.154488 CGGACGTCATTTTGCCACG 60.154 57.895 18.91 4.23 39.48 4.94
428 430 4.014847 ACGTCATTTTGCCACGATAATG 57.985 40.909 0.00 0.00 37.00 1.90
530 532 0.878523 TGTCCGTTTGCTCCGACTTG 60.879 55.000 0.00 0.00 0.00 3.16
534 536 1.063806 CGTTTGCTCCGACTTGAGAG 58.936 55.000 0.00 0.00 34.11 3.20
566 568 1.077716 GGCCGGTCCAAATAGCACT 60.078 57.895 1.90 0.00 34.01 4.40
581 583 8.015658 CCAAATAGCACTAGTACAAAACTGAAC 58.984 37.037 0.00 0.00 39.39 3.18
622 624 2.343758 GACTGGCTGGCTCACGAA 59.656 61.111 2.00 0.00 0.00 3.85
645 656 3.818773 TCCTTTCGTTCCTCCAACATTTC 59.181 43.478 0.00 0.00 34.20 2.17
653 665 4.137116 TCCTCCAACATTTCATACTCCG 57.863 45.455 0.00 0.00 0.00 4.63
764 786 2.945615 GCAAGCGACGCCGTTACAA 61.946 57.895 17.79 0.00 38.24 2.41
776 798 2.330286 CCGTTACAATGCTACGTGTCA 58.670 47.619 0.00 0.00 33.68 3.58
832 855 0.879765 TCCGTCAGAAACCGAGTCTC 59.120 55.000 0.00 0.00 0.00 3.36
862 885 3.130160 CGCCCAAGCAGCCTCTTC 61.130 66.667 0.00 0.00 39.83 2.87
977 1000 1.153369 ACACACAGTGCGACAGCTT 60.153 52.632 0.00 0.00 45.42 3.74
1287 1312 3.858040 GCGTGTAAGATCACAAGCG 57.142 52.632 8.02 1.37 42.48 4.68
1312 1337 1.344458 CAAGTGCTCTGCTCACGTAG 58.656 55.000 0.00 0.00 39.31 3.51
1314 1339 1.822506 AGTGCTCTGCTCACGTAGTA 58.177 50.000 0.00 0.00 41.61 1.82
1315 1340 1.469308 AGTGCTCTGCTCACGTAGTAC 59.531 52.381 0.00 0.00 41.61 2.73
1316 1341 1.469308 GTGCTCTGCTCACGTAGTACT 59.531 52.381 0.00 0.00 41.61 2.73
1319 1344 2.095161 GCTCTGCTCACGTAGTACTTGT 60.095 50.000 0.00 0.00 41.61 3.16
1320 1345 3.126514 GCTCTGCTCACGTAGTACTTGTA 59.873 47.826 0.00 0.00 41.61 2.41
1332 1357 6.931281 ACGTAGTACTTGTACAGTAGAGTTGA 59.069 38.462 0.00 0.00 41.94 3.18
1366 1391 4.968626 TGACATGTATCACAATTTGCGTC 58.031 39.130 0.00 0.00 0.00 5.19
1771 1797 0.863799 CGCACGCCGTACTATCTCTA 59.136 55.000 0.00 0.00 0.00 2.43
1772 1798 1.398198 CGCACGCCGTACTATCTCTAC 60.398 57.143 0.00 0.00 0.00 2.59
1773 1799 1.600957 GCACGCCGTACTATCTCTACA 59.399 52.381 0.00 0.00 0.00 2.74
1818 1852 1.199097 CGGGGTGTGACATTGCTAAAC 59.801 52.381 0.00 0.00 0.00 2.01
2196 2233 3.382832 CTTCGGGCTGAGGACGGT 61.383 66.667 0.00 0.00 0.00 4.83
2351 2388 2.000447 GCGCCTCGTAAAATCTGAAGT 59.000 47.619 0.00 0.00 0.00 3.01
2358 2395 6.142320 GCCTCGTAAAATCTGAAGTTTGTTTG 59.858 38.462 1.25 0.00 0.00 2.93
2465 2502 5.774690 TGGAAGAATAAAATGTGCAGACCTT 59.225 36.000 0.00 0.00 0.00 3.50
2471 2508 6.811253 ATAAAATGTGCAGACCTTTACGAA 57.189 33.333 0.00 0.00 0.00 3.85
2474 2511 6.811253 AAATGTGCAGACCTTTACGAATTA 57.189 33.333 0.00 0.00 0.00 1.40
2475 2512 5.796350 ATGTGCAGACCTTTACGAATTAC 57.204 39.130 0.00 0.00 0.00 1.89
2477 2514 3.922240 GTGCAGACCTTTACGAATTACGA 59.078 43.478 0.00 0.00 45.77 3.43
2478 2515 4.031426 GTGCAGACCTTTACGAATTACGAG 59.969 45.833 0.00 0.00 45.77 4.18
2479 2516 4.171754 GCAGACCTTTACGAATTACGAGT 58.828 43.478 0.00 0.00 45.77 4.18
2480 2517 4.624452 GCAGACCTTTACGAATTACGAGTT 59.376 41.667 0.00 0.00 45.77 3.01
2522 2559 6.292703 GGTGCAACAATAATCGGTACATAGAC 60.293 42.308 0.00 0.00 39.98 2.59
2524 2561 5.989777 GCAACAATAATCGGTACATAGACCT 59.010 40.000 0.00 0.00 37.34 3.85
2525 2562 6.073765 GCAACAATAATCGGTACATAGACCTG 60.074 42.308 0.00 0.00 37.34 4.00
2527 2564 7.828508 ACAATAATCGGTACATAGACCTGTA 57.171 36.000 0.00 0.00 37.34 2.74
2528 2565 7.655490 ACAATAATCGGTACATAGACCTGTAC 58.345 38.462 5.94 5.94 46.98 2.90
2654 2711 8.902806 TCATTTTTAAGACTTATCCATGCGATT 58.097 29.630 0.00 0.00 31.92 3.34
2703 2760 0.463620 ATCTCCAAAGCTCTCTCGCC 59.536 55.000 0.00 0.00 0.00 5.54
2715 2772 1.002624 TCTCGCCCCATTGTGAACC 60.003 57.895 0.00 0.00 0.00 3.62
2730 2787 3.370672 TGTGAACCGAATGTCAATCATCG 59.629 43.478 0.00 0.00 35.48 3.84
2746 2803 5.980698 ATCATCGACATTAGCTTGTTCAG 57.019 39.130 0.00 0.00 0.00 3.02
2761 2821 5.928264 GCTTGTTCAGCCAAATATGTCTTTT 59.072 36.000 0.00 0.00 43.65 2.27
2768 2828 7.734942 TCAGCCAAATATGTCTTTTTCCTTTT 58.265 30.769 0.00 0.00 0.00 2.27
2803 2863 1.977854 ACACTGACTTGGCACCTGATA 59.022 47.619 0.00 0.00 0.00 2.15
2804 2864 2.371841 ACACTGACTTGGCACCTGATAA 59.628 45.455 0.00 0.00 0.00 1.75
2805 2865 3.009473 ACACTGACTTGGCACCTGATAAT 59.991 43.478 0.00 0.00 0.00 1.28
2806 2866 4.012374 CACTGACTTGGCACCTGATAATT 58.988 43.478 0.00 0.00 0.00 1.40
2841 2901 7.946655 TTAGAGTGTCTAACAAAGTGACATG 57.053 36.000 0.00 0.00 41.78 3.21
2842 2902 5.300752 AGAGTGTCTAACAAAGTGACATGG 58.699 41.667 0.00 0.00 41.78 3.66
2875 2935 3.975035 TCAGAATTCTAATGATCGCGTCG 59.025 43.478 7.86 0.00 0.00 5.12
2920 2980 0.255604 TGATTCATGCCCACGGATGT 59.744 50.000 0.00 0.00 0.00 3.06
2941 3001 2.026075 TCATGGATCTTGGTGCACATGA 60.026 45.455 20.43 13.21 41.45 3.07
2942 3002 1.825090 TGGATCTTGGTGCACATGAC 58.175 50.000 20.43 0.95 36.25 3.06
3104 3165 0.459078 TGCCATTTGTGTGTGTGTGG 59.541 50.000 0.00 0.00 0.00 4.17
3106 3167 0.388659 CCATTTGTGTGTGTGTGGGG 59.611 55.000 0.00 0.00 0.00 4.96
3151 3222 1.067142 TCCACCGTTGAGTATGAGTGC 60.067 52.381 0.00 0.00 0.00 4.40
3152 3223 1.337728 CCACCGTTGAGTATGAGTGCA 60.338 52.381 0.00 0.00 0.00 4.57
3174 3245 6.321181 TGCAAGTAACTGGAATTTTTCTCACT 59.679 34.615 0.00 0.00 0.00 3.41
3211 3282 7.050377 AGTCCTATGGTGTTTGATGTAGATTG 58.950 38.462 0.00 0.00 0.00 2.67
3220 3291 7.129622 GTGTTTGATGTAGATTGAACAACGAA 58.870 34.615 0.00 0.00 0.00 3.85
3240 3311 2.715749 ATTCATCCTCCACGATGCAA 57.284 45.000 0.00 0.00 39.64 4.08
3242 3313 1.194218 TCATCCTCCACGATGCAAGA 58.806 50.000 0.00 0.00 39.64 3.02
3295 3366 1.875963 GTTGATGTGGTCTTGCGGG 59.124 57.895 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.467399 TGACACTTTTCGTTTCCGTGAATAT 59.533 36.000 0.00 0.00 35.01 1.28
1 2 4.809958 TGACACTTTTCGTTTCCGTGAATA 59.190 37.500 0.00 0.00 35.01 1.75
2 3 3.623960 TGACACTTTTCGTTTCCGTGAAT 59.376 39.130 0.00 0.00 35.01 2.57
3 4 3.001414 TGACACTTTTCGTTTCCGTGAA 58.999 40.909 0.00 0.00 35.01 3.18
4 5 2.605818 CTGACACTTTTCGTTTCCGTGA 59.394 45.455 0.00 0.00 35.01 4.35
5 6 2.350498 ACTGACACTTTTCGTTTCCGTG 59.650 45.455 0.00 0.00 35.01 4.94
6 7 2.624636 ACTGACACTTTTCGTTTCCGT 58.375 42.857 0.00 0.00 35.01 4.69
7 8 3.545426 GGAACTGACACTTTTCGTTTCCG 60.545 47.826 0.00 0.00 0.00 4.30
8 9 3.375922 TGGAACTGACACTTTTCGTTTCC 59.624 43.478 0.00 0.00 32.89 3.13
9 10 4.609691 TGGAACTGACACTTTTCGTTTC 57.390 40.909 0.00 0.00 0.00 2.78
10 11 4.036380 GGATGGAACTGACACTTTTCGTTT 59.964 41.667 0.00 0.00 0.00 3.60
11 12 3.564225 GGATGGAACTGACACTTTTCGTT 59.436 43.478 0.00 0.00 0.00 3.85
12 13 3.139077 GGATGGAACTGACACTTTTCGT 58.861 45.455 0.00 0.00 0.00 3.85
13 14 2.157668 CGGATGGAACTGACACTTTTCG 59.842 50.000 0.00 0.00 0.00 3.46
14 15 3.399330 TCGGATGGAACTGACACTTTTC 58.601 45.455 0.00 0.00 0.00 2.29
15 16 3.485463 TCGGATGGAACTGACACTTTT 57.515 42.857 0.00 0.00 0.00 2.27
16 17 3.485463 TTCGGATGGAACTGACACTTT 57.515 42.857 0.00 0.00 0.00 2.66
17 18 3.485463 TTTCGGATGGAACTGACACTT 57.515 42.857 0.00 0.00 33.42 3.16
18 19 3.485463 TTTTCGGATGGAACTGACACT 57.515 42.857 0.00 0.00 33.42 3.55
19 20 3.670627 GCATTTTCGGATGGAACTGACAC 60.671 47.826 0.00 0.00 33.42 3.67
20 21 2.487762 GCATTTTCGGATGGAACTGACA 59.512 45.455 0.00 0.00 33.42 3.58
21 22 2.159379 GGCATTTTCGGATGGAACTGAC 60.159 50.000 0.00 0.00 33.42 3.51
22 23 2.091541 GGCATTTTCGGATGGAACTGA 58.908 47.619 0.00 0.00 33.42 3.41
23 24 1.202177 CGGCATTTTCGGATGGAACTG 60.202 52.381 0.00 0.00 33.42 3.16
24 25 1.094785 CGGCATTTTCGGATGGAACT 58.905 50.000 0.00 0.00 33.42 3.01
25 26 0.808755 ACGGCATTTTCGGATGGAAC 59.191 50.000 0.00 0.00 33.42 3.62
26 27 1.540267 AACGGCATTTTCGGATGGAA 58.460 45.000 0.00 0.00 0.00 3.53
27 28 1.470890 GAAACGGCATTTTCGGATGGA 59.529 47.619 0.00 0.00 0.00 3.41
28 29 1.201181 TGAAACGGCATTTTCGGATGG 59.799 47.619 5.17 0.00 38.17 3.51
29 30 2.627863 TGAAACGGCATTTTCGGATG 57.372 45.000 5.17 0.00 38.17 3.51
30 31 3.866883 AATGAAACGGCATTTTCGGAT 57.133 38.095 5.17 0.00 38.17 4.18
31 32 3.651803 AAATGAAACGGCATTTTCGGA 57.348 38.095 7.16 0.00 43.83 4.55
37 38 6.930731 ACAGGTATAAAAATGAAACGGCATT 58.069 32.000 0.00 0.00 40.04 3.56
38 39 6.524101 ACAGGTATAAAAATGAAACGGCAT 57.476 33.333 0.00 0.00 0.00 4.40
39 40 5.968528 ACAGGTATAAAAATGAAACGGCA 57.031 34.783 0.00 0.00 0.00 5.69
40 41 7.382759 TGAAAACAGGTATAAAAATGAAACGGC 59.617 33.333 0.00 0.00 0.00 5.68
41 42 8.696175 GTGAAAACAGGTATAAAAATGAAACGG 58.304 33.333 0.00 0.00 0.00 4.44
42 43 8.414173 CGTGAAAACAGGTATAAAAATGAAACG 58.586 33.333 0.00 0.00 0.00 3.60
43 44 9.240159 ACGTGAAAACAGGTATAAAAATGAAAC 57.760 29.630 0.00 0.00 0.00 2.78
54 55 8.842280 TGAATCTTTTTACGTGAAAACAGGTAT 58.158 29.630 13.59 1.78 36.74 2.73
55 56 8.211116 TGAATCTTTTTACGTGAAAACAGGTA 57.789 30.769 13.59 0.00 36.74 3.08
56 57 7.090953 TGAATCTTTTTACGTGAAAACAGGT 57.909 32.000 13.59 0.00 36.74 4.00
57 58 8.574196 AATGAATCTTTTTACGTGAAAACAGG 57.426 30.769 13.59 5.69 36.74 4.00
66 67 9.894439 CGAAAACAAAAATGAATCTTTTTACGT 57.106 25.926 7.19 0.00 36.45 3.57
67 68 9.894439 ACGAAAACAAAAATGAATCTTTTTACG 57.106 25.926 7.19 5.20 36.45 3.18
72 73 9.060547 GCAAAACGAAAACAAAAATGAATCTTT 57.939 25.926 0.00 0.00 0.00 2.52
73 74 8.233190 TGCAAAACGAAAACAAAAATGAATCTT 58.767 25.926 0.00 0.00 0.00 2.40
74 75 7.746929 TGCAAAACGAAAACAAAAATGAATCT 58.253 26.923 0.00 0.00 0.00 2.40
75 76 7.945326 TGCAAAACGAAAACAAAAATGAATC 57.055 28.000 0.00 0.00 0.00 2.52
76 77 8.733857 TTTGCAAAACGAAAACAAAAATGAAT 57.266 23.077 10.02 0.00 0.00 2.57
77 78 8.733857 ATTTGCAAAACGAAAACAAAAATGAA 57.266 23.077 17.19 0.00 34.25 2.57
78 79 8.733857 AATTTGCAAAACGAAAACAAAAATGA 57.266 23.077 17.19 0.00 34.25 2.57
79 80 8.848528 AGAATTTGCAAAACGAAAACAAAAATG 58.151 25.926 17.19 0.00 34.25 2.32
80 81 8.962857 AGAATTTGCAAAACGAAAACAAAAAT 57.037 23.077 17.19 0.00 34.25 1.82
81 82 8.070171 TGAGAATTTGCAAAACGAAAACAAAAA 58.930 25.926 17.19 0.00 34.25 1.94
82 83 7.576236 TGAGAATTTGCAAAACGAAAACAAAA 58.424 26.923 17.19 0.00 34.25 2.44
83 84 7.121974 TGAGAATTTGCAAAACGAAAACAAA 57.878 28.000 17.19 0.00 34.97 2.83
84 85 6.712241 TGAGAATTTGCAAAACGAAAACAA 57.288 29.167 17.19 0.00 0.00 2.83
85 86 6.900568 ATGAGAATTTGCAAAACGAAAACA 57.099 29.167 17.19 10.36 0.00 2.83
86 87 8.599876 AAAATGAGAATTTGCAAAACGAAAAC 57.400 26.923 17.19 5.23 0.00 2.43
87 88 8.446273 TGAAAATGAGAATTTGCAAAACGAAAA 58.554 25.926 17.19 1.20 0.00 2.29
88 89 7.968246 TGAAAATGAGAATTTGCAAAACGAAA 58.032 26.923 17.19 2.85 0.00 3.46
89 90 7.531280 TGAAAATGAGAATTTGCAAAACGAA 57.469 28.000 17.19 7.70 0.00 3.85
90 91 7.712264 ATGAAAATGAGAATTTGCAAAACGA 57.288 28.000 17.19 6.49 33.18 3.85
91 92 8.770850 AAATGAAAATGAGAATTTGCAAAACG 57.229 26.923 17.19 0.00 33.18 3.60
121 122 9.838975 GAAAGTGTGGAAACAAAAATGAAAATT 57.161 25.926 0.00 0.00 46.06 1.82
122 123 9.230122 AGAAAGTGTGGAAACAAAAATGAAAAT 57.770 25.926 0.00 0.00 46.06 1.82
123 124 8.614469 AGAAAGTGTGGAAACAAAAATGAAAA 57.386 26.923 0.00 0.00 46.06 2.29
124 125 8.093927 AGAGAAAGTGTGGAAACAAAAATGAAA 58.906 29.630 0.00 0.00 46.06 2.69
125 126 7.610865 AGAGAAAGTGTGGAAACAAAAATGAA 58.389 30.769 0.00 0.00 46.06 2.57
126 127 7.169158 AGAGAAAGTGTGGAAACAAAAATGA 57.831 32.000 0.00 0.00 46.06 2.57
127 128 7.832503 AAGAGAAAGTGTGGAAACAAAAATG 57.167 32.000 0.00 0.00 46.06 2.32
128 129 7.877612 ACAAAGAGAAAGTGTGGAAACAAAAAT 59.122 29.630 0.00 0.00 46.06 1.82
129 130 7.213678 ACAAAGAGAAAGTGTGGAAACAAAAA 58.786 30.769 0.00 0.00 46.06 1.94
130 131 6.754193 ACAAAGAGAAAGTGTGGAAACAAAA 58.246 32.000 0.00 0.00 46.06 2.44
131 132 6.339587 ACAAAGAGAAAGTGTGGAAACAAA 57.660 33.333 0.00 0.00 46.06 2.83
132 133 5.975693 ACAAAGAGAAAGTGTGGAAACAA 57.024 34.783 0.00 0.00 46.06 2.83
133 134 5.975693 AACAAAGAGAAAGTGTGGAAACA 57.024 34.783 0.00 0.00 38.70 2.83
134 135 6.528072 CAGAAACAAAGAGAAAGTGTGGAAAC 59.472 38.462 0.00 0.00 0.00 2.78
135 136 6.208599 ACAGAAACAAAGAGAAAGTGTGGAAA 59.791 34.615 0.00 0.00 0.00 3.13
136 137 5.710099 ACAGAAACAAAGAGAAAGTGTGGAA 59.290 36.000 0.00 0.00 0.00 3.53
137 138 5.253330 ACAGAAACAAAGAGAAAGTGTGGA 58.747 37.500 0.00 0.00 0.00 4.02
138 139 5.567138 ACAGAAACAAAGAGAAAGTGTGG 57.433 39.130 0.00 0.00 0.00 4.17
139 140 7.873739 AAAACAGAAACAAAGAGAAAGTGTG 57.126 32.000 0.00 0.00 0.00 3.82
140 141 8.360390 AGAAAAACAGAAACAAAGAGAAAGTGT 58.640 29.630 0.00 0.00 0.00 3.55
141 142 8.748380 AGAAAAACAGAAACAAAGAGAAAGTG 57.252 30.769 0.00 0.00 0.00 3.16
142 143 9.411801 GAAGAAAAACAGAAACAAAGAGAAAGT 57.588 29.630 0.00 0.00 0.00 2.66
143 144 8.578769 CGAAGAAAAACAGAAACAAAGAGAAAG 58.421 33.333 0.00 0.00 0.00 2.62
144 145 7.540745 CCGAAGAAAAACAGAAACAAAGAGAAA 59.459 33.333 0.00 0.00 0.00 2.52
145 146 7.027161 CCGAAGAAAAACAGAAACAAAGAGAA 58.973 34.615 0.00 0.00 0.00 2.87
146 147 6.373216 TCCGAAGAAAAACAGAAACAAAGAGA 59.627 34.615 0.00 0.00 0.00 3.10
147 148 6.551736 TCCGAAGAAAAACAGAAACAAAGAG 58.448 36.000 0.00 0.00 0.00 2.85
148 149 6.373216 TCTCCGAAGAAAAACAGAAACAAAGA 59.627 34.615 0.00 0.00 0.00 2.52
149 150 6.551736 TCTCCGAAGAAAAACAGAAACAAAG 58.448 36.000 0.00 0.00 0.00 2.77
150 151 6.503589 TCTCCGAAGAAAAACAGAAACAAA 57.496 33.333 0.00 0.00 0.00 2.83
151 152 6.150474 ACTTCTCCGAAGAAAAACAGAAACAA 59.850 34.615 10.32 0.00 40.95 2.83
152 153 5.646360 ACTTCTCCGAAGAAAAACAGAAACA 59.354 36.000 10.32 0.00 40.95 2.83
153 154 5.965918 CACTTCTCCGAAGAAAAACAGAAAC 59.034 40.000 10.32 0.00 40.95 2.78
154 155 5.878116 TCACTTCTCCGAAGAAAAACAGAAA 59.122 36.000 10.32 0.00 40.95 2.52
155 156 5.424757 TCACTTCTCCGAAGAAAAACAGAA 58.575 37.500 10.32 0.00 40.95 3.02
156 157 5.018539 TCACTTCTCCGAAGAAAAACAGA 57.981 39.130 10.32 0.00 40.95 3.41
157 158 5.734855 TTCACTTCTCCGAAGAAAAACAG 57.265 39.130 10.32 0.00 40.95 3.16
158 159 6.150474 ACTTTTCACTTCTCCGAAGAAAAACA 59.850 34.615 10.32 0.00 40.95 2.83
159 160 6.552629 ACTTTTCACTTCTCCGAAGAAAAAC 58.447 36.000 10.32 0.00 40.95 2.43
160 161 6.753107 ACTTTTCACTTCTCCGAAGAAAAA 57.247 33.333 10.32 12.98 40.95 1.94
161 162 6.753107 AACTTTTCACTTCTCCGAAGAAAA 57.247 33.333 10.32 6.98 40.95 2.29
162 163 6.456449 CGAAACTTTTCACTTCTCCGAAGAAA 60.456 38.462 10.32 0.00 37.76 2.52
163 164 5.006358 CGAAACTTTTCACTTCTCCGAAGAA 59.994 40.000 10.32 0.00 36.80 2.52
164 165 4.506654 CGAAACTTTTCACTTCTCCGAAGA 59.493 41.667 10.32 0.00 37.01 2.87
165 166 4.318831 CCGAAACTTTTCACTTCTCCGAAG 60.319 45.833 2.26 2.26 37.01 3.79
166 167 3.558418 CCGAAACTTTTCACTTCTCCGAA 59.442 43.478 2.77 0.00 37.01 4.30
167 168 3.128349 CCGAAACTTTTCACTTCTCCGA 58.872 45.455 2.77 0.00 37.01 4.55
168 169 2.349532 GCCGAAACTTTTCACTTCTCCG 60.350 50.000 2.77 0.00 37.01 4.63
169 170 2.879026 AGCCGAAACTTTTCACTTCTCC 59.121 45.455 2.77 0.00 37.01 3.71
170 171 3.810386 AGAGCCGAAACTTTTCACTTCTC 59.190 43.478 2.77 3.11 37.01 2.87
171 172 3.561725 CAGAGCCGAAACTTTTCACTTCT 59.438 43.478 2.77 0.00 37.01 2.85
172 173 3.312697 ACAGAGCCGAAACTTTTCACTTC 59.687 43.478 2.77 0.00 37.01 3.01
173 174 3.279434 ACAGAGCCGAAACTTTTCACTT 58.721 40.909 2.77 0.00 37.01 3.16
174 175 2.919228 ACAGAGCCGAAACTTTTCACT 58.081 42.857 2.77 0.00 37.01 3.41
175 176 3.692791 AACAGAGCCGAAACTTTTCAC 57.307 42.857 2.77 0.00 37.01 3.18
176 177 4.156922 TGAAAACAGAGCCGAAACTTTTCA 59.843 37.500 2.77 0.00 37.01 2.69
177 178 4.668289 TGAAAACAGAGCCGAAACTTTTC 58.332 39.130 0.00 0.00 0.00 2.29
178 179 4.712122 TGAAAACAGAGCCGAAACTTTT 57.288 36.364 0.00 0.00 0.00 2.27
179 180 4.580580 AGATGAAAACAGAGCCGAAACTTT 59.419 37.500 0.00 0.00 0.00 2.66
180 181 4.137543 AGATGAAAACAGAGCCGAAACTT 58.862 39.130 0.00 0.00 0.00 2.66
181 182 3.744660 AGATGAAAACAGAGCCGAAACT 58.255 40.909 0.00 0.00 0.00 2.66
182 183 3.748568 AGAGATGAAAACAGAGCCGAAAC 59.251 43.478 0.00 0.00 0.00 2.78
183 184 4.008074 AGAGATGAAAACAGAGCCGAAA 57.992 40.909 0.00 0.00 0.00 3.46
184 185 3.685139 AGAGATGAAAACAGAGCCGAA 57.315 42.857 0.00 0.00 0.00 4.30
185 186 4.160439 ACATAGAGATGAAAACAGAGCCGA 59.840 41.667 0.00 0.00 36.48 5.54
186 187 4.437239 ACATAGAGATGAAAACAGAGCCG 58.563 43.478 0.00 0.00 36.48 5.52
187 188 6.749923 AAACATAGAGATGAAAACAGAGCC 57.250 37.500 0.00 0.00 36.48 4.70
188 189 8.485976 AGTAAACATAGAGATGAAAACAGAGC 57.514 34.615 0.00 0.00 36.48 4.09
191 192 9.831737 CCAAAGTAAACATAGAGATGAAAACAG 57.168 33.333 0.00 0.00 36.48 3.16
192 193 9.349713 ACCAAAGTAAACATAGAGATGAAAACA 57.650 29.630 0.00 0.00 36.48 2.83
193 194 9.827411 GACCAAAGTAAACATAGAGATGAAAAC 57.173 33.333 0.00 0.00 36.48 2.43
194 195 9.793259 AGACCAAAGTAAACATAGAGATGAAAA 57.207 29.630 0.00 0.00 36.48 2.29
195 196 9.793259 AAGACCAAAGTAAACATAGAGATGAAA 57.207 29.630 0.00 0.00 36.48 2.69
196 197 9.436957 GAAGACCAAAGTAAACATAGAGATGAA 57.563 33.333 0.00 0.00 36.48 2.57
197 198 8.593679 TGAAGACCAAAGTAAACATAGAGATGA 58.406 33.333 0.00 0.00 36.48 2.92
198 199 8.777865 TGAAGACCAAAGTAAACATAGAGATG 57.222 34.615 0.00 0.00 39.16 2.90
199 200 9.793259 TTTGAAGACCAAAGTAAACATAGAGAT 57.207 29.630 0.00 0.00 39.65 2.75
200 201 9.621629 TTTTGAAGACCAAAGTAAACATAGAGA 57.378 29.630 0.00 0.00 44.67 3.10
201 202 9.884465 CTTTTGAAGACCAAAGTAAACATAGAG 57.116 33.333 0.00 0.00 44.67 2.43
202 203 9.621629 TCTTTTGAAGACCAAAGTAAACATAGA 57.378 29.630 0.00 0.00 44.67 1.98
203 204 9.884465 CTCTTTTGAAGACCAAAGTAAACATAG 57.116 33.333 0.00 0.00 44.67 2.23
204 205 8.349983 GCTCTTTTGAAGACCAAAGTAAACATA 58.650 33.333 0.00 0.00 44.67 2.29
205 206 7.147915 TGCTCTTTTGAAGACCAAAGTAAACAT 60.148 33.333 0.00 0.00 44.67 2.71
206 207 6.151985 TGCTCTTTTGAAGACCAAAGTAAACA 59.848 34.615 0.00 0.00 44.67 2.83
207 208 6.560711 TGCTCTTTTGAAGACCAAAGTAAAC 58.439 36.000 0.00 0.00 44.67 2.01
208 209 6.767524 TGCTCTTTTGAAGACCAAAGTAAA 57.232 33.333 0.00 0.00 44.67 2.01
209 210 6.767524 TTGCTCTTTTGAAGACCAAAGTAA 57.232 33.333 0.00 0.00 44.67 2.24
210 211 6.959639 ATTGCTCTTTTGAAGACCAAAGTA 57.040 33.333 3.38 0.00 44.67 2.24
211 212 5.859205 ATTGCTCTTTTGAAGACCAAAGT 57.141 34.783 3.38 0.00 44.67 2.66
212 213 8.822652 ATTTATTGCTCTTTTGAAGACCAAAG 57.177 30.769 3.38 0.00 44.67 2.77
213 214 9.260002 GAATTTATTGCTCTTTTGAAGACCAAA 57.740 29.630 3.38 0.00 42.56 3.28
214 215 8.420222 TGAATTTATTGCTCTTTTGAAGACCAA 58.580 29.630 2.06 2.06 37.46 3.67
215 216 7.950512 TGAATTTATTGCTCTTTTGAAGACCA 58.049 30.769 0.00 0.00 33.12 4.02
216 217 8.703336 GTTGAATTTATTGCTCTTTTGAAGACC 58.297 33.333 0.00 0.00 33.12 3.85
217 218 9.248291 TGTTGAATTTATTGCTCTTTTGAAGAC 57.752 29.630 0.00 0.00 33.12 3.01
218 219 9.467258 CTGTTGAATTTATTGCTCTTTTGAAGA 57.533 29.630 0.00 0.00 35.87 2.87
219 220 9.252962 ACTGTTGAATTTATTGCTCTTTTGAAG 57.747 29.630 0.00 0.00 0.00 3.02
220 221 9.598517 AACTGTTGAATTTATTGCTCTTTTGAA 57.401 25.926 0.00 0.00 0.00 2.69
221 222 9.033481 CAACTGTTGAATTTATTGCTCTTTTGA 57.967 29.630 15.26 0.00 0.00 2.69
222 223 8.819974 ACAACTGTTGAATTTATTGCTCTTTTG 58.180 29.630 26.00 0.00 0.00 2.44
223 224 8.947055 ACAACTGTTGAATTTATTGCTCTTTT 57.053 26.923 26.00 0.00 0.00 2.27
224 225 8.947055 AACAACTGTTGAATTTATTGCTCTTT 57.053 26.923 26.00 2.84 36.80 2.52
225 226 7.653311 GGAACAACTGTTGAATTTATTGCTCTT 59.347 33.333 26.00 5.79 38.56 2.85
226 227 7.147976 GGAACAACTGTTGAATTTATTGCTCT 58.852 34.615 26.00 0.00 38.56 4.09
227 228 6.922957 TGGAACAACTGTTGAATTTATTGCTC 59.077 34.615 26.00 6.87 38.56 4.26
228 229 6.815089 TGGAACAACTGTTGAATTTATTGCT 58.185 32.000 26.00 0.00 38.56 3.91
247 248 1.134694 GCTGAAACGGCGATGGAAC 59.865 57.895 16.62 0.00 0.00 3.62
248 249 2.038269 GGCTGAAACGGCGATGGAA 61.038 57.895 16.62 0.00 36.46 3.53
249 250 2.435938 GGCTGAAACGGCGATGGA 60.436 61.111 16.62 0.00 36.46 3.41
250 251 1.861542 TTTGGCTGAAACGGCGATGG 61.862 55.000 16.62 0.00 36.46 3.51
251 252 0.039617 TTTTGGCTGAAACGGCGATG 60.040 50.000 16.62 0.00 36.46 3.84
252 253 0.240945 CTTTTGGCTGAAACGGCGAT 59.759 50.000 16.62 0.00 36.46 4.58
253 254 1.652012 CTTTTGGCTGAAACGGCGA 59.348 52.632 16.62 0.00 36.46 5.54
254 255 2.016165 GCTTTTGGCTGAAACGGCG 61.016 57.895 4.80 4.80 36.46 6.46
255 256 1.664649 GGCTTTTGGCTGAAACGGC 60.665 57.895 0.00 0.00 42.31 5.68
256 257 1.006220 GGGCTTTTGGCTGAAACGG 60.006 57.895 0.00 0.00 45.25 4.44
257 258 0.103937 TTGGGCTTTTGGCTGAAACG 59.896 50.000 0.00 0.00 45.25 3.60
258 259 2.323968 TTTGGGCTTTTGGCTGAAAC 57.676 45.000 0.00 0.00 45.25 2.78
259 260 2.637947 GTTTTGGGCTTTTGGCTGAAA 58.362 42.857 0.00 0.00 45.25 2.69
260 261 1.134250 GGTTTTGGGCTTTTGGCTGAA 60.134 47.619 0.00 0.00 45.25 3.02
261 262 0.467804 GGTTTTGGGCTTTTGGCTGA 59.532 50.000 0.00 0.00 45.25 4.26
262 263 0.469494 AGGTTTTGGGCTTTTGGCTG 59.531 50.000 0.00 0.00 45.25 4.85
263 264 2.095604 TAGGTTTTGGGCTTTTGGCT 57.904 45.000 0.00 0.00 45.25 4.75
264 265 2.698803 CATAGGTTTTGGGCTTTTGGC 58.301 47.619 0.00 0.00 45.19 4.52
265 266 2.302733 AGCATAGGTTTTGGGCTTTTGG 59.697 45.455 0.00 0.00 0.00 3.28
266 267 3.683365 AGCATAGGTTTTGGGCTTTTG 57.317 42.857 0.00 0.00 0.00 2.44
267 268 4.322725 GCTAAGCATAGGTTTTGGGCTTTT 60.323 41.667 0.00 0.00 41.67 2.27
268 269 3.195610 GCTAAGCATAGGTTTTGGGCTTT 59.804 43.478 0.00 0.00 41.67 3.51
269 270 2.760650 GCTAAGCATAGGTTTTGGGCTT 59.239 45.455 0.00 0.00 45.78 4.35
270 271 2.379005 GCTAAGCATAGGTTTTGGGCT 58.621 47.619 0.00 0.00 36.13 5.19
271 272 1.409064 GGCTAAGCATAGGTTTTGGGC 59.591 52.381 0.00 0.00 0.00 5.36
272 273 2.733956 TGGCTAAGCATAGGTTTTGGG 58.266 47.619 0.00 0.00 0.00 4.12
273 274 3.763897 ACTTGGCTAAGCATAGGTTTTGG 59.236 43.478 10.10 0.00 37.43 3.28
274 275 4.702131 AGACTTGGCTAAGCATAGGTTTTG 59.298 41.667 10.10 0.00 37.43 2.44
275 276 4.923415 AGACTTGGCTAAGCATAGGTTTT 58.077 39.130 10.10 0.00 37.43 2.43
276 277 4.576330 AGACTTGGCTAAGCATAGGTTT 57.424 40.909 10.10 0.00 37.43 3.27
277 278 5.693769 TTAGACTTGGCTAAGCATAGGTT 57.306 39.130 10.10 0.00 37.43 3.50
278 279 5.896073 ATTAGACTTGGCTAAGCATAGGT 57.104 39.130 10.10 0.00 37.43 3.08
279 280 6.203723 GTGAATTAGACTTGGCTAAGCATAGG 59.796 42.308 10.10 0.00 37.43 2.57
280 281 6.203723 GGTGAATTAGACTTGGCTAAGCATAG 59.796 42.308 10.10 0.00 37.43 2.23
281 282 6.055588 GGTGAATTAGACTTGGCTAAGCATA 58.944 40.000 10.10 0.06 37.43 3.14
282 283 4.884164 GGTGAATTAGACTTGGCTAAGCAT 59.116 41.667 10.10 1.08 37.43 3.79
283 284 4.261801 GGTGAATTAGACTTGGCTAAGCA 58.738 43.478 10.10 0.00 37.43 3.91
284 285 3.628032 GGGTGAATTAGACTTGGCTAAGC 59.372 47.826 10.10 3.02 37.43 3.09
285 286 4.080299 AGGGGTGAATTAGACTTGGCTAAG 60.080 45.833 8.47 8.47 39.86 2.18
286 287 3.850173 AGGGGTGAATTAGACTTGGCTAA 59.150 43.478 0.00 0.00 35.06 3.09
287 288 3.460825 AGGGGTGAATTAGACTTGGCTA 58.539 45.455 0.00 0.00 0.00 3.93
288 289 2.279173 AGGGGTGAATTAGACTTGGCT 58.721 47.619 0.00 0.00 0.00 4.75
289 290 2.808906 AGGGGTGAATTAGACTTGGC 57.191 50.000 0.00 0.00 0.00 4.52
290 291 5.828328 GGATTAAGGGGTGAATTAGACTTGG 59.172 44.000 0.00 0.00 0.00 3.61
291 292 5.828328 GGGATTAAGGGGTGAATTAGACTTG 59.172 44.000 0.00 0.00 0.00 3.16
292 293 5.736616 AGGGATTAAGGGGTGAATTAGACTT 59.263 40.000 0.00 0.00 0.00 3.01
293 294 5.297799 AGGGATTAAGGGGTGAATTAGACT 58.702 41.667 0.00 0.00 0.00 3.24
294 295 5.648330 AGGGATTAAGGGGTGAATTAGAC 57.352 43.478 0.00 0.00 0.00 2.59
295 296 7.964730 ATAAGGGATTAAGGGGTGAATTAGA 57.035 36.000 0.00 0.00 0.00 2.10
298 299 9.601810 GAATTATAAGGGATTAAGGGGTGAATT 57.398 33.333 0.00 0.00 0.00 2.17
299 300 8.742437 TGAATTATAAGGGATTAAGGGGTGAAT 58.258 33.333 0.00 0.00 0.00 2.57
300 301 8.120256 TGAATTATAAGGGATTAAGGGGTGAA 57.880 34.615 0.00 0.00 0.00 3.18
301 302 7.715267 TGAATTATAAGGGATTAAGGGGTGA 57.285 36.000 0.00 0.00 0.00 4.02
302 303 8.806146 CAATGAATTATAAGGGATTAAGGGGTG 58.194 37.037 0.00 0.00 0.00 4.61
303 304 8.519597 ACAATGAATTATAAGGGATTAAGGGGT 58.480 33.333 0.00 0.00 0.00 4.95
304 305 8.806146 CACAATGAATTATAAGGGATTAAGGGG 58.194 37.037 0.00 0.00 0.00 4.79
305 306 9.586732 TCACAATGAATTATAAGGGATTAAGGG 57.413 33.333 0.00 0.00 0.00 3.95
322 323 9.868277 AAGTTCACAGTTAAATTTCACAATGAA 57.132 25.926 13.34 13.34 34.03 2.57
327 328 9.959749 GGAATAAGTTCACAGTTAAATTTCACA 57.040 29.630 5.36 0.00 36.01 3.58
337 338 8.985805 CGTAGTTTTAGGAATAAGTTCACAGTT 58.014 33.333 0.00 0.00 36.01 3.16
338 339 7.117379 GCGTAGTTTTAGGAATAAGTTCACAGT 59.883 37.037 0.00 0.00 36.01 3.55
339 340 7.412672 GGCGTAGTTTTAGGAATAAGTTCACAG 60.413 40.741 0.00 0.00 36.01 3.66
340 341 6.369615 GGCGTAGTTTTAGGAATAAGTTCACA 59.630 38.462 0.00 0.00 36.01 3.58
341 342 6.369615 TGGCGTAGTTTTAGGAATAAGTTCAC 59.630 38.462 0.00 0.00 36.01 3.18
342 343 6.369615 GTGGCGTAGTTTTAGGAATAAGTTCA 59.630 38.462 0.00 0.00 36.01 3.18
343 344 6.369615 TGTGGCGTAGTTTTAGGAATAAGTTC 59.630 38.462 0.00 0.00 0.00 3.01
344 345 6.148315 GTGTGGCGTAGTTTTAGGAATAAGTT 59.852 38.462 0.00 0.00 0.00 2.66
345 346 5.640783 GTGTGGCGTAGTTTTAGGAATAAGT 59.359 40.000 0.00 0.00 0.00 2.24
346 347 5.873164 AGTGTGGCGTAGTTTTAGGAATAAG 59.127 40.000 0.00 0.00 0.00 1.73
347 348 5.797051 AGTGTGGCGTAGTTTTAGGAATAA 58.203 37.500 0.00 0.00 0.00 1.40
348 349 5.410355 AGTGTGGCGTAGTTTTAGGAATA 57.590 39.130 0.00 0.00 0.00 1.75
349 350 4.281898 AGTGTGGCGTAGTTTTAGGAAT 57.718 40.909 0.00 0.00 0.00 3.01
350 351 3.756933 AGTGTGGCGTAGTTTTAGGAA 57.243 42.857 0.00 0.00 0.00 3.36
351 352 3.573538 TGTAGTGTGGCGTAGTTTTAGGA 59.426 43.478 0.00 0.00 0.00 2.94
352 353 3.916761 TGTAGTGTGGCGTAGTTTTAGG 58.083 45.455 0.00 0.00 0.00 2.69
353 354 3.924686 CCTGTAGTGTGGCGTAGTTTTAG 59.075 47.826 0.00 0.00 0.00 1.85
354 355 3.573538 TCCTGTAGTGTGGCGTAGTTTTA 59.426 43.478 0.00 0.00 0.00 1.52
355 356 2.366266 TCCTGTAGTGTGGCGTAGTTTT 59.634 45.455 0.00 0.00 0.00 2.43
356 357 1.965643 TCCTGTAGTGTGGCGTAGTTT 59.034 47.619 0.00 0.00 0.00 2.66
357 358 1.624336 TCCTGTAGTGTGGCGTAGTT 58.376 50.000 0.00 0.00 0.00 2.24
358 359 1.544691 CTTCCTGTAGTGTGGCGTAGT 59.455 52.381 0.00 0.00 0.00 2.73
359 360 1.816835 TCTTCCTGTAGTGTGGCGTAG 59.183 52.381 0.00 0.00 0.00 3.51
360 361 1.913778 TCTTCCTGTAGTGTGGCGTA 58.086 50.000 0.00 0.00 0.00 4.42
361 362 1.204941 GATCTTCCTGTAGTGTGGCGT 59.795 52.381 0.00 0.00 0.00 5.68
362 363 1.799181 CGATCTTCCTGTAGTGTGGCG 60.799 57.143 0.00 0.00 0.00 5.69
363 364 1.204941 ACGATCTTCCTGTAGTGTGGC 59.795 52.381 0.00 0.00 0.00 5.01
364 365 4.920640 ATACGATCTTCCTGTAGTGTGG 57.079 45.455 0.00 0.00 0.00 4.17
365 366 5.651530 ACAATACGATCTTCCTGTAGTGTG 58.348 41.667 9.13 0.00 43.28 3.82
366 367 5.652891 AGACAATACGATCTTCCTGTAGTGT 59.347 40.000 9.54 9.54 46.29 3.55
367 368 6.137794 AGACAATACGATCTTCCTGTAGTG 57.862 41.667 0.00 4.35 39.36 2.74
368 369 6.458478 CGAAGACAATACGATCTTCCTGTAGT 60.458 42.308 8.09 0.00 45.37 2.73
369 370 5.910166 CGAAGACAATACGATCTTCCTGTAG 59.090 44.000 8.09 0.00 45.37 2.74
370 371 5.732528 GCGAAGACAATACGATCTTCCTGTA 60.733 44.000 8.09 0.00 45.37 2.74
371 372 4.673441 CGAAGACAATACGATCTTCCTGT 58.327 43.478 8.09 0.00 45.37 4.00
372 373 3.487574 GCGAAGACAATACGATCTTCCTG 59.512 47.826 8.09 0.00 45.37 3.86
373 374 3.381908 AGCGAAGACAATACGATCTTCCT 59.618 43.478 8.09 4.50 45.37 3.36
374 375 3.707793 AGCGAAGACAATACGATCTTCC 58.292 45.455 8.09 2.65 45.37 3.46
375 376 5.108705 CGTAAGCGAAGACAATACGATCTTC 60.109 44.000 4.28 4.28 44.92 2.87
376 377 4.733887 CGTAAGCGAAGACAATACGATCTT 59.266 41.667 0.00 0.00 41.21 2.40
377 378 4.034858 TCGTAAGCGAAGACAATACGATCT 59.965 41.667 2.57 0.00 44.92 2.75
378 379 4.277258 TCGTAAGCGAAGACAATACGATC 58.723 43.478 2.57 0.00 44.92 3.69
379 380 4.282950 TCGTAAGCGAAGACAATACGAT 57.717 40.909 2.57 0.00 44.92 3.73
380 381 3.745332 TCGTAAGCGAAGACAATACGA 57.255 42.857 2.57 2.57 44.92 3.43
398 399 0.179250 CAAAATGACGTCCGCACTCG 60.179 55.000 14.12 0.00 0.00 4.18
399 400 0.452784 GCAAAATGACGTCCGCACTC 60.453 55.000 14.12 0.00 0.00 3.51
400 401 1.574428 GCAAAATGACGTCCGCACT 59.426 52.632 14.12 0.00 0.00 4.40
401 402 1.442017 GGCAAAATGACGTCCGCAC 60.442 57.895 14.12 0.00 0.00 5.34
403 404 1.442017 GTGGCAAAATGACGTCCGC 60.442 57.895 14.12 7.71 0.00 5.54
404 405 1.154488 CGTGGCAAAATGACGTCCG 60.154 57.895 14.12 1.64 0.00 4.79
405 406 0.802494 ATCGTGGCAAAATGACGTCC 59.198 50.000 14.12 0.00 34.69 4.79
422 424 7.116376 CCACAATCTGATACCACGTACATTATC 59.884 40.741 0.00 0.00 0.00 1.75
428 430 4.097437 TCTCCACAATCTGATACCACGTAC 59.903 45.833 0.00 0.00 0.00 3.67
436 438 4.684214 GCCACATGTCTCCACAATCTGATA 60.684 45.833 0.00 0.00 35.64 2.15
437 439 3.882444 CCACATGTCTCCACAATCTGAT 58.118 45.455 0.00 0.00 35.64 2.90
503 505 1.461127 GAGCAAACGGACATGAGTCAC 59.539 52.381 0.00 0.00 46.80 3.67
534 536 2.191641 GGCCAGCCCAGAGATGAC 59.808 66.667 0.00 0.00 0.00 3.06
536 538 4.559063 CCGGCCAGCCCAGAGATG 62.559 72.222 2.24 0.00 0.00 2.90
554 556 7.446769 TCAGTTTTGTACTAGTGCTATTTGGA 58.553 34.615 12.42 1.44 34.56 3.53
555 557 7.667043 TCAGTTTTGTACTAGTGCTATTTGG 57.333 36.000 12.42 0.00 34.56 3.28
558 560 7.149973 TCGTTCAGTTTTGTACTAGTGCTATT 58.850 34.615 12.42 0.00 34.56 1.73
601 603 1.680522 CGTGAGCCAGCCAGTCCTAT 61.681 60.000 0.00 0.00 0.00 2.57
622 624 3.721087 ATGTTGGAGGAACGAAAGGAT 57.279 42.857 0.00 0.00 37.38 3.24
634 645 2.285220 CGCGGAGTATGAAATGTTGGAG 59.715 50.000 0.00 0.00 0.00 3.86
636 647 2.276201 TCGCGGAGTATGAAATGTTGG 58.724 47.619 6.13 0.00 0.00 3.77
645 656 0.596083 CTCTTGCCTCGCGGAGTATG 60.596 60.000 6.13 0.00 0.00 2.39
653 665 1.337823 TGGTTACTTCTCTTGCCTCGC 60.338 52.381 0.00 0.00 0.00 5.03
764 786 1.214589 GTCGGGTGACACGTAGCAT 59.785 57.895 7.27 0.00 44.82 3.79
977 1000 0.242825 CACTTCTCCTACCGTTCGCA 59.757 55.000 0.00 0.00 0.00 5.10
1252 1277 4.377708 CTTTTTGGGGCTGCCGGC 62.378 66.667 22.73 22.73 40.90 6.13
1312 1337 9.956720 TTTTACTCAACTCTACTGTACAAGTAC 57.043 33.333 0.00 3.47 40.56 2.73
1319 1344 9.856488 CAGCTTATTTTACTCAACTCTACTGTA 57.144 33.333 0.00 0.00 0.00 2.74
1320 1345 8.585881 TCAGCTTATTTTACTCAACTCTACTGT 58.414 33.333 0.00 0.00 0.00 3.55
1332 1357 9.448438 TTGTGATACATGTCAGCTTATTTTACT 57.552 29.630 0.00 0.00 0.00 2.24
1403 1429 1.141665 CCTGCCGATCGTGTGATGA 59.858 57.895 15.09 0.00 34.09 2.92
1771 1797 5.350365 ACGCGTAACAAACAATCTCATATGT 59.650 36.000 11.67 0.00 0.00 2.29
1772 1798 5.672426 CACGCGTAACAAACAATCTCATATG 59.328 40.000 13.44 0.00 0.00 1.78
1773 1799 5.726688 GCACGCGTAACAAACAATCTCATAT 60.727 40.000 13.44 0.00 0.00 1.78
1854 1888 2.441901 CCTCCCGCTGCTCTCTCT 60.442 66.667 0.00 0.00 0.00 3.10
2186 2223 4.767255 GCCCTGCACCGTCCTCAG 62.767 72.222 0.00 0.00 0.00 3.35
2308 2345 1.137825 CCTGAGCGACTCGAAGGAC 59.862 63.158 1.63 0.00 32.35 3.85
2465 2502 5.472148 ACACATGGAACTCGTAATTCGTAA 58.528 37.500 0.00 0.00 40.80 3.18
2474 2511 7.494625 CACCTTATATTTACACATGGAACTCGT 59.505 37.037 0.00 0.00 0.00 4.18
2475 2512 7.518370 GCACCTTATATTTACACATGGAACTCG 60.518 40.741 0.00 0.00 0.00 4.18
2476 2513 7.282224 TGCACCTTATATTTACACATGGAACTC 59.718 37.037 0.00 0.00 0.00 3.01
2477 2514 7.116075 TGCACCTTATATTTACACATGGAACT 58.884 34.615 0.00 0.00 0.00 3.01
2478 2515 7.328277 TGCACCTTATATTTACACATGGAAC 57.672 36.000 0.00 0.00 0.00 3.62
2479 2516 7.394641 TGTTGCACCTTATATTTACACATGGAA 59.605 33.333 0.00 0.00 0.00 3.53
2480 2517 6.887002 TGTTGCACCTTATATTTACACATGGA 59.113 34.615 0.00 0.00 0.00 3.41
2522 2559 1.749063 TCTGCATGGTACTCGTACAGG 59.251 52.381 9.22 0.01 37.78 4.00
2524 2561 2.758423 ACATCTGCATGGTACTCGTACA 59.242 45.455 9.22 0.00 37.78 2.90
2525 2562 3.438297 ACATCTGCATGGTACTCGTAC 57.562 47.619 0.00 0.00 33.82 3.67
2527 2564 2.233676 TCAACATCTGCATGGTACTCGT 59.766 45.455 0.00 0.00 33.82 4.18
2528 2565 2.892374 TCAACATCTGCATGGTACTCG 58.108 47.619 0.00 0.00 33.82 4.18
2647 2704 4.274459 GGCTCAACTGATCTAAAATCGCAT 59.726 41.667 0.00 0.00 0.00 4.73
2654 2711 5.012046 TGACTCAAGGCTCAACTGATCTAAA 59.988 40.000 0.00 0.00 0.00 1.85
2703 2760 2.158559 TGACATTCGGTTCACAATGGG 58.841 47.619 0.00 0.00 34.77 4.00
2779 2839 3.279116 TGCCAAGTCAGTGTGCGC 61.279 61.111 0.00 0.00 0.00 6.09
2786 2846 4.095483 GTCAATTATCAGGTGCCAAGTCAG 59.905 45.833 0.00 0.00 0.00 3.51
2803 2863 7.823745 AGACACTCTAAACCAAATGTCAATT 57.176 32.000 5.11 0.00 39.11 2.32
2804 2864 8.784043 GTTAGACACTCTAAACCAAATGTCAAT 58.216 33.333 5.11 0.00 40.30 2.57
2805 2865 7.771361 TGTTAGACACTCTAAACCAAATGTCAA 59.229 33.333 5.11 0.00 40.30 3.18
2806 2866 7.276658 TGTTAGACACTCTAAACCAAATGTCA 58.723 34.615 5.11 0.00 40.30 3.58
2841 2901 8.950210 TCATTAGAATTCTGACATGAACTTTCC 58.050 33.333 18.47 0.00 0.00 3.13
2875 2935 1.450312 CCAACTCCGGCATCACCTC 60.450 63.158 0.00 0.00 35.61 3.85
2896 2956 1.671979 CGTGGGCATGAATCAGATGT 58.328 50.000 0.00 0.00 0.00 3.06
2897 2957 0.949397 CCGTGGGCATGAATCAGATG 59.051 55.000 0.00 0.00 0.00 2.90
2898 2958 0.839277 TCCGTGGGCATGAATCAGAT 59.161 50.000 0.00 0.00 0.00 2.90
2920 2980 2.026075 TCATGTGCACCAAGATCCATGA 60.026 45.455 15.69 11.10 37.08 3.07
2941 3001 2.042842 TGGGTTGGATGTCATCATTGGT 59.957 45.455 14.72 0.00 34.06 3.67
2942 3002 2.737544 TGGGTTGGATGTCATCATTGG 58.262 47.619 14.72 0.00 34.06 3.16
3031 3091 2.203480 TGTTTGCCCCTGCTCCAC 60.203 61.111 0.00 0.00 38.71 4.02
3034 3094 1.391157 TTGTGTGTTTGCCCCTGCTC 61.391 55.000 0.00 0.00 38.71 4.26
3035 3095 0.975040 TTTGTGTGTTTGCCCCTGCT 60.975 50.000 0.00 0.00 38.71 4.24
3037 3097 2.393271 TTTTTGTGTGTTTGCCCCTG 57.607 45.000 0.00 0.00 0.00 4.45
3111 3172 1.751927 CTTGGTGCATCTCAGCCCC 60.752 63.158 0.00 0.00 42.30 5.80
3151 3222 7.930217 TCAGTGAGAAAAATTCCAGTTACTTG 58.070 34.615 0.00 0.00 0.00 3.16
3152 3223 7.255277 GCTCAGTGAGAAAAATTCCAGTTACTT 60.255 37.037 24.55 0.00 0.00 2.24
3174 3245 4.039609 CACCATAGGACTACATCATGCTCA 59.960 45.833 0.00 0.00 0.00 4.26
3211 3282 4.669197 CGTGGAGGATGAATTTCGTTGTTC 60.669 45.833 0.00 0.00 0.00 3.18
3220 3291 2.715749 TGCATCGTGGAGGATGAATT 57.284 45.000 12.41 0.00 45.27 2.17
3240 3311 6.297080 TCAGATGAAGAAGAGCTCAAATCT 57.703 37.500 17.77 13.22 0.00 2.40
3242 3313 6.651086 TGATCAGATGAAGAAGAGCTCAAAT 58.349 36.000 17.77 0.80 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.