Multiple sequence alignment - TraesCS6A01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G249800 chr6A 100.000 7802 0 0 1 7802 463519714 463527515 0.000000e+00 14408.0
1 TraesCS6A01G249800 chr6A 93.624 298 18 1 4737 5033 193788254 193788551 2.000000e-120 444.0
2 TraesCS6A01G249800 chr6A 94.286 245 11 2 7560 7801 578665423 578665667 9.560000e-99 372.0
3 TraesCS6A01G249800 chr6A 87.611 113 5 2 5156 5260 463524758 463524869 1.060000e-23 122.0
4 TraesCS6A01G249800 chr6A 87.611 113 5 2 5045 5156 463524869 463524973 1.060000e-23 122.0
5 TraesCS6A01G249800 chr6A 96.429 56 2 0 3337 3392 463524472 463524527 8.340000e-15 93.5
6 TraesCS6A01G249800 chr6A 96.364 55 2 0 530 584 115323206 115323260 3.000000e-14 91.6
7 TraesCS6A01G249800 chr6D 95.111 4582 155 24 584 5153 325381844 325386368 0.000000e+00 7156.0
8 TraesCS6A01G249800 chr6D 93.091 1346 52 21 6046 7378 325388029 325389346 0.000000e+00 1932.0
9 TraesCS6A01G249800 chr6D 95.577 814 24 5 5142 5943 325386981 325387794 0.000000e+00 1293.0
10 TraesCS6A01G249800 chr6D 92.766 235 16 1 5813 6046 325387764 325387998 9.700000e-89 339.0
11 TraesCS6A01G249800 chr6D 89.933 149 7 6 7397 7541 325389275 325389419 1.340000e-42 185.0
12 TraesCS6A01G249800 chr6D 92.920 113 7 1 5045 5156 325386995 325387107 6.260000e-36 163.0
13 TraesCS6A01G249800 chr6D 86.667 105 5 1 5156 5251 325386259 325386363 2.980000e-19 108.0
14 TraesCS6A01G249800 chr6D 96.226 53 2 0 527 579 40387776 40387828 3.880000e-13 87.9
15 TraesCS6A01G249800 chr6B 94.829 2727 115 10 584 3307 497895756 497893053 0.000000e+00 4231.0
16 TraesCS6A01G249800 chr6B 92.535 2880 122 30 4354 7209 497892236 497889426 0.000000e+00 4041.0
17 TraesCS6A01G249800 chr6B 96.442 815 29 0 3394 4208 497893045 497892231 0.000000e+00 1345.0
18 TraesCS6A01G249800 chr6B 91.880 468 22 5 75 541 683955947 683956399 2.370000e-179 640.0
19 TraesCS6A01G249800 chr6B 93.266 297 20 0 4737 5033 197678394 197678098 9.290000e-119 438.0
20 TraesCS6A01G249800 chr6B 98.649 74 1 0 1 74 683955824 683955897 1.770000e-26 132.0
21 TraesCS6A01G249800 chr6B 92.958 71 2 2 5192 5260 497891522 497891453 4.980000e-17 100.0
22 TraesCS6A01G249800 chr6B 88.608 79 7 1 5032 5110 583191506 583191430 2.320000e-15 95.3
23 TraesCS6A01G249800 chr6B 89.394 66 4 3 5348 5413 497891338 497891276 6.490000e-11 80.5
24 TraesCS6A01G249800 chr2D 100.000 584 0 0 1 584 353282554 353283137 0.000000e+00 1079.0
25 TraesCS6A01G249800 chr2D 97.619 126 3 0 416 541 524945065 524945190 4.740000e-52 217.0
26 TraesCS6A01G249800 chr2D 85.616 146 21 0 2761 2906 603689656 603689801 3.770000e-33 154.0
27 TraesCS6A01G249800 chr7B 83.361 595 70 10 2161 2749 664041827 664042398 2.490000e-144 523.0
28 TraesCS6A01G249800 chr7B 90.052 382 31 3 3448 3823 664042728 664043108 9.100000e-134 488.0
29 TraesCS6A01G249800 chr7B 92.500 40 1 2 5071 5108 728667242 728667203 1.000000e-03 56.5
30 TraesCS6A01G249800 chr3A 93.624 298 18 1 4737 5033 384766907 384767204 2.000000e-120 444.0
31 TraesCS6A01G249800 chr3A 93.033 244 13 3 7561 7801 127963246 127963004 3.460000e-93 353.0
32 TraesCS6A01G249800 chr3A 93.033 244 13 2 7562 7801 308311637 308311880 3.460000e-93 353.0
33 TraesCS6A01G249800 chr3A 90.530 264 20 3 7543 7801 208119710 208119447 2.080000e-90 344.0
34 TraesCS6A01G249800 chr3A 92.614 176 13 0 5415 5590 734064210 734064035 3.610000e-63 254.0
35 TraesCS6A01G249800 chr3A 81.250 208 29 5 4531 4728 734064513 734064306 8.100000e-35 159.0
36 TraesCS6A01G249800 chr3A 96.970 33 1 0 5081 5113 431125543 431125575 1.000000e-03 56.5
37 TraesCS6A01G249800 chrUn 93.289 298 19 1 4737 5033 235119083 235119380 9.290000e-119 438.0
38 TraesCS6A01G249800 chrUn 93.289 298 19 1 4737 5033 306498015 306497718 9.290000e-119 438.0
39 TraesCS6A01G249800 chrUn 93.266 297 20 0 4737 5033 358476114 358475818 9.290000e-119 438.0
40 TraesCS6A01G249800 chrUn 94.239 243 11 2 7560 7799 308629729 308629971 1.240000e-97 368.0
41 TraesCS6A01G249800 chr4B 93.311 299 16 3 4737 5033 654322396 654322100 9.290000e-119 438.0
42 TraesCS6A01G249800 chr4B 82.642 265 38 8 3942 4203 315717574 315717315 2.190000e-55 228.0
43 TraesCS6A01G249800 chr2B 84.255 470 32 21 82 541 92053371 92053808 3.370000e-113 420.0
44 TraesCS6A01G249800 chr2B 86.557 305 17 8 305 587 185560497 185560799 1.630000e-81 315.0
45 TraesCS6A01G249800 chr2B 97.351 151 4 0 414 564 621034367 621034517 2.790000e-64 257.0
46 TraesCS6A01G249800 chr2B 85.632 174 25 0 5417 5590 789121849 789121676 4.810000e-42 183.0
47 TraesCS6A01G249800 chr2B 81.818 198 16 8 3 183 185560268 185560462 1.750000e-31 148.0
48 TraesCS6A01G249800 chr2A 94.239 243 11 2 7560 7799 765449342 765449584 1.240000e-97 368.0
49 TraesCS6A01G249800 chr2A 95.349 172 8 0 414 585 670443956 670444127 2.770000e-69 274.0
50 TraesCS6A01G249800 chr2A 92.593 54 4 0 5019 5072 118669651 118669704 2.330000e-10 78.7
51 TraesCS6A01G249800 chr7A 93.061 245 12 3 7560 7801 34032172 34032414 3.460000e-93 353.0
52 TraesCS6A01G249800 chr7A 79.167 96 14 4 5024 5113 516110429 516110524 2.350000e-05 62.1
53 TraesCS6A01G249800 chr1A 92.683 246 13 4 7559 7801 335044749 335044506 4.480000e-92 350.0
54 TraesCS6A01G249800 chr1A 91.954 174 14 0 5415 5588 129393456 129393283 2.170000e-60 244.0
55 TraesCS6A01G249800 chr1A 81.905 210 28 5 4531 4730 129393759 129393550 1.350000e-37 169.0
56 TraesCS6A01G249800 chr5A 89.963 269 18 6 7537 7800 623686856 623687120 9.700000e-89 339.0
57 TraesCS6A01G249800 chr5A 89.109 202 19 2 5391 5592 618668997 618669195 1.680000e-61 248.0
58 TraesCS6A01G249800 chr5A 81.532 222 31 5 4519 4730 618668702 618668923 2.890000e-39 174.0
59 TraesCS6A01G249800 chr5A 80.769 130 18 3 2852 2979 518406584 518406460 2.320000e-15 95.3
60 TraesCS6A01G249800 chr5B 91.133 203 18 0 5391 5593 693170197 693170399 7.710000e-70 276.0
61 TraesCS6A01G249800 chr5B 88.312 77 8 1 5032 5107 393050087 393050163 3.000000e-14 91.6
62 TraesCS6A01G249800 chr4D 84.375 288 33 9 4354 4638 220368795 220369073 9.980000e-69 272.0
63 TraesCS6A01G249800 chr4D 85.106 94 5 3 5023 5107 479997569 479997662 3.880000e-13 87.9
64 TraesCS6A01G249800 chr4D 82.955 88 13 2 454 541 492598963 492598878 2.330000e-10 78.7
65 TraesCS6A01G249800 chr1D 91.000 200 18 0 5394 5593 459430537 459430338 3.590000e-68 270.0
66 TraesCS6A01G249800 chr1D 84.211 95 5 6 5031 5116 335585125 335585032 5.020000e-12 84.2
67 TraesCS6A01G249800 chr5D 89.048 210 23 0 5382 5591 155843072 155843281 2.160000e-65 261.0
68 TraesCS6A01G249800 chr5D 82.432 222 29 5 4519 4730 155842786 155843007 1.340000e-42 185.0
69 TraesCS6A01G249800 chr5D 81.166 223 30 5 4519 4730 375965311 375965532 1.350000e-37 169.0
70 TraesCS6A01G249800 chr5D 90.909 66 6 0 530 595 542428721 542428656 1.080000e-13 89.8
71 TraesCS6A01G249800 chr4A 83.333 114 16 3 474 585 314686634 314686522 1.390000e-17 102.0
72 TraesCS6A01G249800 chr4A 89.394 66 7 0 530 595 626723019 626723084 5.020000e-12 84.2
73 TraesCS6A01G249800 chr1B 80.292 137 10 6 471 590 440054557 440054421 3.880000e-13 87.9
74 TraesCS6A01G249800 chr3B 83.333 96 7 5 5031 5117 398966044 398965949 6.490000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G249800 chr6A 463519714 463527515 7801 False 3686.375000 14408 92.91275 1 7802 4 chr6A.!!$F4 7801
1 TraesCS6A01G249800 chr6D 325381844 325389419 7575 False 1596.571429 7156 92.29500 584 7541 7 chr6D.!!$F2 6957
2 TraesCS6A01G249800 chr6B 497889426 497895756 6330 True 1959.500000 4231 93.23160 584 7209 5 chr6B.!!$R3 6625
3 TraesCS6A01G249800 chr6B 683955824 683956399 575 False 386.000000 640 95.26450 1 541 2 chr6B.!!$F1 540
4 TraesCS6A01G249800 chr2D 353282554 353283137 583 False 1079.000000 1079 100.00000 1 584 1 chr2D.!!$F1 583
5 TraesCS6A01G249800 chr7B 664041827 664043108 1281 False 505.500000 523 86.70650 2161 3823 2 chr7B.!!$F1 1662
6 TraesCS6A01G249800 chr2B 185560268 185560799 531 False 231.500000 315 84.18750 3 587 2 chr2B.!!$F3 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 792 0.745845 CAGAGCCCCAACGGAATCTG 60.746 60.000 0.00 0.0 39.35 2.90 F
1695 1777 0.692419 ACCTCCAGATCCTCCGCATT 60.692 55.000 0.00 0.0 0.00 3.56 F
1998 2080 0.323178 CTGGGCCTGCTGAACATCTT 60.323 55.000 4.53 0.0 0.00 2.40 F
3077 3192 0.110056 GACCTTTGCGTGTGATGCTG 60.110 55.000 0.00 0.0 0.00 4.41 F
3964 4105 1.740585 TGGTGTGTTTGGTTTGAGTCG 59.259 47.619 0.00 0.0 0.00 4.18 F
4500 4641 1.065126 AGCATTGGCAGTAGGGAAGAC 60.065 52.381 0.00 0.0 44.61 3.01 F
5660 6440 1.593196 ATGACACCAACACTCCAACG 58.407 50.000 0.00 0.0 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 1906 0.245266 CAACAGCTGCAATGCCATCA 59.755 50.000 15.27 0.0 0.00 3.07 R
2793 2908 2.105821 AGGTTGGACGAAGGATTTGACA 59.894 45.455 0.00 0.0 32.44 3.58 R
3944 4085 1.740585 CGACTCAAACCAAACACACCA 59.259 47.619 0.00 0.0 0.00 4.17 R
4247 4388 0.536260 CCACCAGAGAGGAAGAGCTG 59.464 60.000 0.00 0.0 41.22 4.24 R
5512 6292 0.033208 TGGGTCCATTCCATTCCTGC 60.033 55.000 0.00 0.0 0.00 4.85 R
5766 6546 1.070134 GACCAGTTGGCTAGTGTCACA 59.930 52.381 5.62 0.0 39.32 3.58 R
7541 8473 0.178906 TGTCACCTGATCCCTGTCCA 60.179 55.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
617 691 4.022416 CCTTGGAGAAGATGGAGAGATACG 60.022 50.000 0.00 0.00 0.00 3.06
717 792 0.745845 CAGAGCCCCAACGGAATCTG 60.746 60.000 0.00 0.00 39.35 2.90
810 888 1.241315 AAAACCCTCCACCGCAATCG 61.241 55.000 0.00 0.00 0.00 3.34
817 895 1.448540 CCACCGCAATCGCTCTCTT 60.449 57.895 0.00 0.00 35.30 2.85
1089 1171 4.154347 GACCTCTGGCTGCTCCCG 62.154 72.222 0.00 0.00 0.00 5.14
1448 1530 2.055684 GTCTCGCTAACCCTAGACCT 57.944 55.000 0.00 0.00 33.74 3.85
1451 1533 1.099879 TCGCTAACCCTAGACCTCGC 61.100 60.000 0.00 0.00 0.00 5.03
1563 1645 2.511373 CGCTTATCGGCCACAGCA 60.511 61.111 2.24 0.00 42.56 4.41
1638 1720 2.743718 CTTGAGCTCCACCGGTGT 59.256 61.111 31.80 14.76 0.00 4.16
1650 1732 2.202440 CGGTGTACTGACCTCGCG 60.202 66.667 0.00 0.00 33.35 5.87
1695 1777 0.692419 ACCTCCAGATCCTCCGCATT 60.692 55.000 0.00 0.00 0.00 3.56
1704 1786 4.481112 CTCCGCATTGTTGCCGCC 62.481 66.667 0.00 0.00 46.57 6.13
1833 1915 2.590821 GAGGGCAGTTATGATGGCATT 58.409 47.619 0.00 0.00 44.55 3.56
1842 1924 1.191535 ATGATGGCATTGCAGCTGTT 58.808 45.000 16.64 0.00 34.17 3.16
1845 1927 1.895020 ATGGCATTGCAGCTGTTGGG 61.895 55.000 16.64 4.44 34.17 4.12
1998 2080 0.323178 CTGGGCCTGCTGAACATCTT 60.323 55.000 4.53 0.00 0.00 2.40
2199 2281 9.166173 CACCAATCTGACTCTTCAAATGTATTA 57.834 33.333 0.00 0.00 0.00 0.98
2275 2360 6.905609 GCGCCTTCTACTGTTTAATTATTCAC 59.094 38.462 0.00 0.00 0.00 3.18
2288 2373 8.878333 GTTTAATTATTCACGCTTTTTGTTTGC 58.122 29.630 0.00 0.00 0.00 3.68
2334 2420 7.474364 GCCAATAAAAGGAGCCTTAGGTATCTA 60.474 40.741 1.54 0.00 34.84 1.98
2335 2421 8.437575 CCAATAAAAGGAGCCTTAGGTATCTAA 58.562 37.037 1.54 0.00 34.84 2.10
2336 2422 9.274206 CAATAAAAGGAGCCTTAGGTATCTAAC 57.726 37.037 1.54 0.00 34.84 2.34
2337 2423 5.532664 AAAGGAGCCTTAGGTATCTAACG 57.467 43.478 1.54 0.00 34.84 3.18
2338 2424 4.181799 AGGAGCCTTAGGTATCTAACGT 57.818 45.455 0.00 0.00 32.53 3.99
2339 2425 4.544683 AGGAGCCTTAGGTATCTAACGTT 58.455 43.478 5.88 5.88 32.53 3.99
2340 2426 4.583907 AGGAGCCTTAGGTATCTAACGTTC 59.416 45.833 2.82 0.00 32.53 3.95
2341 2427 4.535116 GAGCCTTAGGTATCTAACGTTCG 58.465 47.826 2.82 0.00 32.53 3.95
2342 2428 3.317430 AGCCTTAGGTATCTAACGTTCGG 59.683 47.826 2.82 0.00 32.53 4.30
2343 2429 3.316308 GCCTTAGGTATCTAACGTTCGGA 59.684 47.826 2.82 5.11 32.53 4.55
2344 2430 4.022503 GCCTTAGGTATCTAACGTTCGGAT 60.023 45.833 2.82 12.55 32.53 4.18
2345 2431 5.458891 CCTTAGGTATCTAACGTTCGGATG 58.541 45.833 20.06 7.82 32.53 3.51
2346 2432 3.366440 AGGTATCTAACGTTCGGATGC 57.634 47.619 20.06 18.70 0.00 3.91
2347 2433 2.957006 AGGTATCTAACGTTCGGATGCT 59.043 45.455 21.56 11.67 0.00 3.79
2348 2434 4.139786 AGGTATCTAACGTTCGGATGCTA 58.860 43.478 21.56 6.62 0.00 3.49
2349 2435 4.765856 AGGTATCTAACGTTCGGATGCTAT 59.234 41.667 21.56 13.46 0.00 2.97
2350 2436 4.857588 GGTATCTAACGTTCGGATGCTATG 59.142 45.833 21.56 0.22 0.00 2.23
2351 2437 4.848562 ATCTAACGTTCGGATGCTATGA 57.151 40.909 2.82 0.00 0.00 2.15
2352 2438 3.961182 TCTAACGTTCGGATGCTATGAC 58.039 45.455 2.82 0.00 0.00 3.06
2353 2439 2.665649 AACGTTCGGATGCTATGACA 57.334 45.000 0.00 0.00 0.00 3.58
2354 2440 2.890808 ACGTTCGGATGCTATGACAT 57.109 45.000 0.00 0.00 0.00 3.06
2355 2441 3.179443 ACGTTCGGATGCTATGACATT 57.821 42.857 0.00 0.00 0.00 2.71
2356 2442 2.866156 ACGTTCGGATGCTATGACATTG 59.134 45.455 0.00 0.00 0.00 2.82
2357 2443 3.123050 CGTTCGGATGCTATGACATTGA 58.877 45.455 0.73 0.00 0.00 2.57
2358 2444 3.742882 CGTTCGGATGCTATGACATTGAT 59.257 43.478 0.73 0.00 0.00 2.57
2359 2445 4.212004 CGTTCGGATGCTATGACATTGATT 59.788 41.667 0.73 0.00 0.00 2.57
2393 2505 5.336213 GGGATAGAATGCTTGCAATACATGG 60.336 44.000 13.97 0.00 0.00 3.66
2397 2509 0.614134 TGCTTGCAATACATGGCCCA 60.614 50.000 0.00 0.00 0.00 5.36
2401 2513 1.076044 GCAATACATGGCCCACCCT 60.076 57.895 0.00 0.00 33.59 4.34
2509 2623 6.929049 TGAGAGTGTTCTAACAACCAATACTG 59.071 38.462 0.00 0.00 41.21 2.74
2549 2663 7.552459 AGCAAATTTTTACACTTACTTGTGGT 58.448 30.769 0.00 0.00 41.84 4.16
2680 2794 6.370718 AGTTAACGTATTCAAGGTTGATGTCC 59.629 38.462 0.00 0.00 36.84 4.02
2707 2822 6.099701 TCAGGTGATATATTTAGTGTGCTGGT 59.900 38.462 0.00 0.00 0.00 4.00
2759 2874 8.649973 AGCGAAACCTTTTCTCTACTTATATG 57.350 34.615 0.00 0.00 0.00 1.78
2760 2875 8.258708 AGCGAAACCTTTTCTCTACTTATATGT 58.741 33.333 0.00 0.00 0.00 2.29
2761 2876 9.525409 GCGAAACCTTTTCTCTACTTATATGTA 57.475 33.333 0.00 0.00 0.00 2.29
2793 2908 6.370186 AAAGAAAGTACCGTTCCCTCTTAT 57.630 37.500 3.81 0.00 0.00 1.73
2898 3013 3.377172 AGCAATAAATTCACAGCCCGTAC 59.623 43.478 0.00 0.00 0.00 3.67
2961 3076 8.164070 GGTAACCCAATAAAGTAGATCCATCAT 58.836 37.037 0.00 0.00 0.00 2.45
2979 3094 7.118723 TCCATCATGGGCATATACCTATTTTC 58.881 38.462 3.05 0.00 38.32 2.29
3020 3135 2.666317 GCACATACTATTTTGGCCCCT 58.334 47.619 0.00 0.00 0.00 4.79
3021 3136 3.435890 GGCACATACTATTTTGGCCCCTA 60.436 47.826 0.00 0.00 33.93 3.53
3076 3191 0.534877 TGACCTTTGCGTGTGATGCT 60.535 50.000 0.00 0.00 0.00 3.79
3077 3192 0.110056 GACCTTTGCGTGTGATGCTG 60.110 55.000 0.00 0.00 0.00 4.41
3353 3470 8.897752 GGATGTCTAATTTAGAGACTTGCAAAT 58.102 33.333 6.37 0.00 43.19 2.32
3359 3476 6.801539 ATTTAGAGACTTGCAAATCGTCAA 57.198 33.333 16.81 4.13 0.00 3.18
3760 3900 5.483685 AGTGGCATGTTACTGTTTCTCTA 57.516 39.130 0.00 0.00 0.00 2.43
3919 4060 5.359194 TTCTAGCTTGTTTCCTGGATAGG 57.641 43.478 0.00 0.00 46.06 2.57
3944 4085 5.371526 CATCTTGTGCCATTCATACCTAGT 58.628 41.667 0.00 0.00 0.00 2.57
3964 4105 1.740585 TGGTGTGTTTGGTTTGAGTCG 59.259 47.619 0.00 0.00 0.00 4.18
4188 4329 2.050144 ACCCCATCATTATCTCAGCGT 58.950 47.619 0.00 0.00 0.00 5.07
4303 4444 4.217159 GGGCCAGTAGGTACGGCG 62.217 72.222 4.80 4.80 42.57 6.46
4336 4477 2.821366 GTGGGCTGCGAGATGGTG 60.821 66.667 0.00 0.00 0.00 4.17
4343 4484 2.265739 GCGAGATGGTGTCCAGCA 59.734 61.111 6.80 1.19 43.12 4.41
4373 4514 2.678934 TCCACCCGGAGTCCTTCG 60.679 66.667 0.73 0.00 35.91 3.79
4484 4625 1.577736 AAGGACTAGACCAGCAGCAT 58.422 50.000 13.84 0.00 0.00 3.79
4500 4641 1.065126 AGCATTGGCAGTAGGGAAGAC 60.065 52.381 0.00 0.00 44.61 3.01
4508 4649 2.645802 CAGTAGGGAAGACGAGTAGCT 58.354 52.381 0.00 0.00 0.00 3.32
4715 4859 5.163913 CGAGAGAGCTGTGAGGTAAATTTTG 60.164 44.000 0.00 0.00 0.00 2.44
4768 4912 6.884472 TCCCAACTTCCATATTTAGAGACA 57.116 37.500 0.00 0.00 0.00 3.41
4888 5034 6.151663 TGCCATCATTCACTATCAAATTGG 57.848 37.500 0.00 0.00 0.00 3.16
4939 5085 9.623000 GGAAGTACTTAGGAATAAATTTAGCCA 57.377 33.333 8.42 5.73 0.00 4.75
4995 5141 6.709397 TCTTAGCAGCATTATCATTTGAGGAG 59.291 38.462 0.00 0.00 0.00 3.69
4996 5142 3.568853 AGCAGCATTATCATTTGAGGAGC 59.431 43.478 0.00 0.00 0.00 4.70
5040 5186 7.669722 GTCATGATCTTATCTTCTACTCCCTCT 59.330 40.741 0.00 0.00 0.00 3.69
5054 5200 8.188501 TCTACTCCCTCTGTCCCATAATATAT 57.811 38.462 0.00 0.00 0.00 0.86
5127 5274 3.363341 TTTTCCATTCTTCGCAACACC 57.637 42.857 0.00 0.00 0.00 4.16
5261 6040 8.939201 ACTGACTTCTTGATATATGACAACAG 57.061 34.615 0.00 0.00 0.00 3.16
5267 6046 7.558161 TCTTGATATATGACAACAGCAAAGG 57.442 36.000 0.00 0.00 0.00 3.11
5284 6063 8.435187 ACAGCAAAGGATTCTTGATATATGAGA 58.565 33.333 0.00 0.00 32.75 3.27
5405 6185 7.974482 TGCCATGAGTAAATGAGAATATCAG 57.026 36.000 0.00 0.00 42.53 2.90
5442 6222 4.074970 AGGTGAGCTGAATCAAATTCGTT 58.925 39.130 0.00 0.00 42.15 3.85
5512 6292 5.049060 TCCATCATTTGACTACAACCAAACG 60.049 40.000 0.00 0.00 35.42 3.60
5524 6304 1.923356 ACCAAACGCAGGAATGGAAT 58.077 45.000 0.00 0.00 36.75 3.01
5637 6417 3.127425 AGTGAACTAGTGGGCTGAAAC 57.873 47.619 0.00 0.00 0.00 2.78
5660 6440 1.593196 ATGACACCAACACTCCAACG 58.407 50.000 0.00 0.00 0.00 4.10
5859 6640 5.163764 CGCACAACATAAAATAGGCAAGAGA 60.164 40.000 0.00 0.00 0.00 3.10
5920 6804 7.642669 CGTGCATCTGGTTATTAGAAATGAAT 58.357 34.615 0.00 0.00 0.00 2.57
5936 6820 8.888579 AGAAATGAATGGGTAATAACTAGACG 57.111 34.615 0.00 0.00 0.00 4.18
5940 6824 3.425577 TGGGTAATAACTAGACGCACG 57.574 47.619 0.00 0.00 31.83 5.34
5956 6842 2.906897 CGCCTGGGCTGTGTTTGT 60.907 61.111 10.04 0.00 39.32 2.83
5960 6846 1.331214 CCTGGGCTGTGTTTGTCATT 58.669 50.000 0.00 0.00 0.00 2.57
5965 6851 1.336240 GGCTGTGTTTGTCATTCAGGC 60.336 52.381 0.00 0.00 42.44 4.85
5969 6855 0.592637 TGTTTGTCATTCAGGCAGCG 59.407 50.000 0.00 0.00 30.49 5.18
6003 6889 5.899120 TGCCTGTTTTACTGTTTGTAACA 57.101 34.783 0.00 0.00 40.47 2.41
6125 7042 6.595716 AGCTTAATGGAAGTGCTAGTACAAAG 59.404 38.462 13.75 6.05 37.49 2.77
6157 7074 6.279882 AGTTTTTGTGTGTGTGGATATTTGG 58.720 36.000 0.00 0.00 0.00 3.28
6220 7141 6.664816 TCCTCTTGTGGAAATGCTTTTCATAT 59.335 34.615 22.27 0.00 42.55 1.78
6222 7143 7.363181 CCTCTTGTGGAAATGCTTTTCATATGA 60.363 37.037 22.27 0.00 42.55 2.15
6334 7255 6.721668 TGGATGTACCATAGGATCTTGACTAG 59.278 42.308 0.00 0.00 44.64 2.57
6335 7256 6.722129 GGATGTACCATAGGATCTTGACTAGT 59.278 42.308 0.00 0.00 38.79 2.57
6336 7257 7.094118 GGATGTACCATAGGATCTTGACTAGTC 60.094 44.444 16.32 16.32 38.79 2.59
6337 7258 5.763698 TGTACCATAGGATCTTGACTAGTCG 59.236 44.000 17.85 4.97 0.00 4.18
6338 7259 4.794334 ACCATAGGATCTTGACTAGTCGT 58.206 43.478 17.85 4.17 0.00 4.34
6339 7260 4.822896 ACCATAGGATCTTGACTAGTCGTC 59.177 45.833 17.85 12.28 43.14 4.20
6340 7261 5.067273 CCATAGGATCTTGACTAGTCGTCT 58.933 45.833 17.85 10.45 43.25 4.18
6341 7262 5.180492 CCATAGGATCTTGACTAGTCGTCTC 59.820 48.000 17.85 11.18 43.25 3.36
6342 7263 4.223556 AGGATCTTGACTAGTCGTCTCA 57.776 45.455 17.85 0.00 43.25 3.27
6343 7264 3.942748 AGGATCTTGACTAGTCGTCTCAC 59.057 47.826 17.85 7.24 43.25 3.51
6344 7265 3.942748 GGATCTTGACTAGTCGTCTCACT 59.057 47.826 17.85 0.00 43.25 3.41
6345 7266 4.396790 GGATCTTGACTAGTCGTCTCACTT 59.603 45.833 17.85 0.00 43.25 3.16
6346 7267 5.585445 GGATCTTGACTAGTCGTCTCACTTA 59.415 44.000 17.85 0.00 43.25 2.24
6347 7268 6.261381 GGATCTTGACTAGTCGTCTCACTTAT 59.739 42.308 17.85 1.79 43.25 1.73
6348 7269 6.665474 TCTTGACTAGTCGTCTCACTTATC 57.335 41.667 17.85 0.00 43.25 1.75
6349 7270 6.408035 TCTTGACTAGTCGTCTCACTTATCT 58.592 40.000 17.85 0.00 43.25 1.98
6350 7271 6.879993 TCTTGACTAGTCGTCTCACTTATCTT 59.120 38.462 17.85 0.00 43.25 2.40
6351 7272 6.424176 TGACTAGTCGTCTCACTTATCTTG 57.576 41.667 17.85 0.00 43.25 3.02
6352 7273 6.171213 TGACTAGTCGTCTCACTTATCTTGA 58.829 40.000 17.85 0.00 43.25 3.02
6353 7274 6.092396 TGACTAGTCGTCTCACTTATCTTGAC 59.908 42.308 17.85 0.00 43.25 3.18
6354 7275 6.174760 ACTAGTCGTCTCACTTATCTTGACT 58.825 40.000 0.00 0.00 38.78 3.41
6355 7276 7.329499 ACTAGTCGTCTCACTTATCTTGACTA 58.671 38.462 0.00 0.00 36.83 2.59
6362 7283 8.188799 CGTCTCACTTATCTTGACTAATGGTTA 58.811 37.037 0.00 0.00 0.00 2.85
6802 7723 2.870372 CGGGTGTTGCTGCTTAGC 59.130 61.111 0.00 0.00 0.00 3.09
6835 7756 7.510549 TCTTTTGGTCCAGACAGAATTTTAG 57.489 36.000 0.00 0.00 0.00 1.85
6880 7801 2.318908 TGGAGCTGGTGCAAATTCTTT 58.681 42.857 0.00 0.00 42.74 2.52
6998 7919 0.905357 AGCTGACACTACCCCATGAC 59.095 55.000 0.00 0.00 0.00 3.06
7011 7934 2.561569 CCCATGACGATCCTAACCAAC 58.438 52.381 0.00 0.00 0.00 3.77
7113 8039 6.490877 CACCAAAAGTGTTCGTGTTTTATC 57.509 37.500 0.00 0.00 41.93 1.75
7114 8040 5.457473 CACCAAAAGTGTTCGTGTTTTATCC 59.543 40.000 0.00 0.00 41.93 2.59
7115 8041 4.979815 CCAAAAGTGTTCGTGTTTTATCCC 59.020 41.667 0.00 0.00 0.00 3.85
7175 8101 4.088923 CACACTTTGCATTGCAGAAATACG 59.911 41.667 11.76 0.00 40.61 3.06
7177 8103 4.321745 CACTTTGCATTGCAGAAATACGTC 59.678 41.667 11.76 0.00 40.61 4.34
7206 8136 2.440501 CAAATGCAGAAATACGTCGGC 58.559 47.619 0.00 0.00 38.95 5.54
7221 8151 2.106074 CGGCGGCTACTTGATGCAA 61.106 57.895 7.61 0.00 0.00 4.08
7228 8158 3.366273 CGGCTACTTGATGCAATGTGTTT 60.366 43.478 0.00 0.00 0.00 2.83
7270 8200 8.206867 TGGTGATGAATTAATTTGGTTTGTCAA 58.793 29.630 1.43 0.00 0.00 3.18
7271 8201 8.711457 GGTGATGAATTAATTTGGTTTGTCAAG 58.289 33.333 1.43 0.00 0.00 3.02
7272 8202 8.711457 GTGATGAATTAATTTGGTTTGTCAAGG 58.289 33.333 1.43 0.00 0.00 3.61
7281 8211 2.158813 TGGTTTGTCAAGGGACTCACTC 60.159 50.000 0.00 0.00 44.61 3.51
7315 8246 2.738314 GGAATGTTGATGTTGCCTTTGC 59.262 45.455 0.00 0.00 38.26 3.68
7373 8305 4.676849 TTTTTGTGACAAAAGCCTTTGC 57.323 36.364 20.98 2.08 44.96 3.68
7374 8306 3.325293 TTTGTGACAAAAGCCTTTGCA 57.675 38.095 8.51 4.55 44.96 4.08
7375 8307 3.540314 TTGTGACAAAAGCCTTTGCAT 57.460 38.095 7.71 0.00 44.96 3.96
7376 8308 3.540314 TGTGACAAAAGCCTTTGCATT 57.460 38.095 7.71 0.00 44.96 3.56
7377 8309 3.871485 TGTGACAAAAGCCTTTGCATTT 58.129 36.364 7.71 0.00 44.96 2.32
7378 8310 4.260170 TGTGACAAAAGCCTTTGCATTTT 58.740 34.783 7.71 0.00 44.96 1.82
7379 8311 4.699257 TGTGACAAAAGCCTTTGCATTTTT 59.301 33.333 7.71 0.00 44.96 1.94
7403 8335 6.843069 TTATTTTGAGACAAAAGCCTTTGC 57.157 33.333 7.71 1.50 44.96 3.68
7404 8336 3.883830 TTTGAGACAAAAGCCTTTGCA 57.116 38.095 7.71 0.00 44.96 4.08
7405 8337 4.405116 TTTGAGACAAAAGCCTTTGCAT 57.595 36.364 7.71 0.00 44.96 3.96
7406 8338 4.405116 TTGAGACAAAAGCCTTTGCATT 57.595 36.364 7.71 0.00 44.96 3.56
7407 8339 4.405116 TGAGACAAAAGCCTTTGCATTT 57.595 36.364 7.71 0.00 44.96 2.32
7408 8340 4.768583 TGAGACAAAAGCCTTTGCATTTT 58.231 34.783 7.71 0.00 44.96 1.82
7409 8341 5.184711 TGAGACAAAAGCCTTTGCATTTTT 58.815 33.333 7.71 0.00 44.96 1.94
7433 8365 6.843069 TTATTTTGAGACAAAAGCCTTTGC 57.157 33.333 7.71 1.50 44.96 3.68
7434 8366 3.883830 TTTGAGACAAAAGCCTTTGCA 57.116 38.095 7.71 0.00 44.96 4.08
7435 8367 4.405116 TTTGAGACAAAAGCCTTTGCAT 57.595 36.364 7.71 0.00 44.96 3.96
7436 8368 4.405116 TTGAGACAAAAGCCTTTGCATT 57.595 36.364 7.71 0.00 44.96 3.56
7437 8369 4.405116 TGAGACAAAAGCCTTTGCATTT 57.595 36.364 7.71 0.00 44.96 2.32
7438 8370 4.768583 TGAGACAAAAGCCTTTGCATTTT 58.231 34.783 7.71 0.00 44.96 1.82
7439 8371 5.184711 TGAGACAAAAGCCTTTGCATTTTT 58.815 33.333 7.71 0.00 44.96 1.94
7541 8473 3.790437 CCGTCCCAGCTGCCAGAT 61.790 66.667 8.66 0.00 0.00 2.90
7542 8474 2.513204 CGTCCCAGCTGCCAGATG 60.513 66.667 8.66 2.21 0.00 2.90
7547 8479 4.220413 CAGCTGCCAGATGGACAG 57.780 61.111 1.02 14.98 40.16 3.51
7548 8480 1.451567 CAGCTGCCAGATGGACAGG 60.452 63.158 18.61 5.74 38.72 4.00
7549 8481 2.124403 GCTGCCAGATGGACAGGG 60.124 66.667 18.61 3.28 38.72 4.45
7550 8482 2.673200 GCTGCCAGATGGACAGGGA 61.673 63.158 18.61 0.00 38.72 4.20
7551 8483 1.992519 GCTGCCAGATGGACAGGGAT 61.993 60.000 18.61 0.00 38.72 3.85
7552 8484 0.108207 CTGCCAGATGGACAGGGATC 59.892 60.000 2.18 0.00 36.42 3.36
7553 8485 0.621280 TGCCAGATGGACAGGGATCA 60.621 55.000 2.18 0.00 37.39 2.92
7554 8486 0.108207 GCCAGATGGACAGGGATCAG 59.892 60.000 2.18 0.00 37.39 2.90
7555 8487 0.763652 CCAGATGGACAGGGATCAGG 59.236 60.000 0.00 0.00 37.39 3.86
7556 8488 1.504912 CAGATGGACAGGGATCAGGT 58.495 55.000 0.00 0.00 0.00 4.00
7557 8489 1.140452 CAGATGGACAGGGATCAGGTG 59.860 57.143 0.00 0.00 0.00 4.00
7558 8490 1.008815 AGATGGACAGGGATCAGGTGA 59.991 52.381 0.00 0.00 0.00 4.02
7559 8491 1.139853 GATGGACAGGGATCAGGTGAC 59.860 57.143 0.00 0.00 0.00 3.67
7560 8492 0.178906 TGGACAGGGATCAGGTGACA 60.179 55.000 0.00 0.00 0.00 3.58
7561 8493 1.207791 GGACAGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 0.00 3.06
7562 8494 1.134280 GGACAGGGATCAGGTGACATG 60.134 57.143 0.00 0.00 0.00 3.21
7563 8495 1.556911 GACAGGGATCAGGTGACATGT 59.443 52.381 0.00 0.00 0.00 3.21
7564 8496 1.556911 ACAGGGATCAGGTGACATGTC 59.443 52.381 19.27 19.27 0.00 3.06
7565 8497 1.556451 CAGGGATCAGGTGACATGTCA 59.444 52.381 24.56 24.56 37.24 3.58
7583 8515 4.988598 CCGTGTGACTTGCGGCCT 62.989 66.667 0.00 0.00 38.99 5.19
7584 8516 2.048597 CGTGTGACTTGCGGCCTA 60.049 61.111 0.00 0.00 0.00 3.93
7585 8517 1.666553 CGTGTGACTTGCGGCCTAA 60.667 57.895 0.00 0.00 0.00 2.69
7586 8518 1.225376 CGTGTGACTTGCGGCCTAAA 61.225 55.000 0.00 0.00 0.00 1.85
7587 8519 1.165270 GTGTGACTTGCGGCCTAAAT 58.835 50.000 0.00 0.00 0.00 1.40
7588 8520 1.539827 GTGTGACTTGCGGCCTAAATT 59.460 47.619 0.00 0.00 0.00 1.82
7589 8521 1.810151 TGTGACTTGCGGCCTAAATTC 59.190 47.619 0.00 0.00 0.00 2.17
7590 8522 1.810151 GTGACTTGCGGCCTAAATTCA 59.190 47.619 0.00 2.13 0.00 2.57
7591 8523 2.423538 GTGACTTGCGGCCTAAATTCAT 59.576 45.455 0.00 0.00 0.00 2.57
7592 8524 3.625764 GTGACTTGCGGCCTAAATTCATA 59.374 43.478 0.00 0.00 0.00 2.15
7593 8525 4.275936 GTGACTTGCGGCCTAAATTCATAT 59.724 41.667 0.00 0.00 0.00 1.78
7594 8526 4.887071 TGACTTGCGGCCTAAATTCATATT 59.113 37.500 0.00 0.00 0.00 1.28
7595 8527 5.359576 TGACTTGCGGCCTAAATTCATATTT 59.640 36.000 0.00 0.00 37.68 1.40
7596 8528 6.544197 TGACTTGCGGCCTAAATTCATATTTA 59.456 34.615 0.00 0.00 35.61 1.40
7597 8529 7.067615 TGACTTGCGGCCTAAATTCATATTTAA 59.932 33.333 0.00 0.00 36.16 1.52
7598 8530 7.777095 ACTTGCGGCCTAAATTCATATTTAAA 58.223 30.769 0.00 0.00 36.16 1.52
7599 8531 7.704899 ACTTGCGGCCTAAATTCATATTTAAAC 59.295 33.333 0.00 0.00 36.16 2.01
7600 8532 7.101652 TGCGGCCTAAATTCATATTTAAACA 57.898 32.000 0.00 0.00 36.16 2.83
7601 8533 7.721402 TGCGGCCTAAATTCATATTTAAACAT 58.279 30.769 0.00 0.00 36.16 2.71
7602 8534 8.200792 TGCGGCCTAAATTCATATTTAAACATT 58.799 29.630 0.00 0.00 36.16 2.71
7603 8535 8.487176 GCGGCCTAAATTCATATTTAAACATTG 58.513 33.333 0.00 0.00 36.16 2.82
7604 8536 9.528018 CGGCCTAAATTCATATTTAAACATTGT 57.472 29.630 0.00 0.00 36.16 2.71
7642 8574 8.951787 AAAAATTGCATGTTCATAGCACATAT 57.048 26.923 0.00 1.13 38.11 1.78
7643 8575 8.951787 AAAATTGCATGTTCATAGCACATATT 57.048 26.923 0.00 5.37 38.11 1.28
7646 8578 9.687210 AATTGCATGTTCATAGCACATATTAAG 57.313 29.630 0.00 0.00 38.11 1.85
7647 8579 8.449251 TTGCATGTTCATAGCACATATTAAGA 57.551 30.769 0.00 0.00 38.11 2.10
7648 8580 8.625786 TGCATGTTCATAGCACATATTAAGAT 57.374 30.769 0.00 0.00 32.88 2.40
7649 8581 9.723601 TGCATGTTCATAGCACATATTAAGATA 57.276 29.630 0.00 0.00 32.88 1.98
7689 8621 8.879342 AAAATCAAAATTCGAAACATACACCA 57.121 26.923 0.00 0.00 0.00 4.17
7690 8622 8.879342 AAATCAAAATTCGAAACATACACCAA 57.121 26.923 0.00 0.00 0.00 3.67
7691 8623 8.519492 AATCAAAATTCGAAACATACACCAAG 57.481 30.769 0.00 0.00 0.00 3.61
7692 8624 7.265647 TCAAAATTCGAAACATACACCAAGA 57.734 32.000 0.00 0.00 0.00 3.02
7693 8625 7.708051 TCAAAATTCGAAACATACACCAAGAA 58.292 30.769 0.00 0.00 0.00 2.52
7694 8626 7.860373 TCAAAATTCGAAACATACACCAAGAAG 59.140 33.333 0.00 0.00 0.00 2.85
7695 8627 4.742438 TTCGAAACATACACCAAGAAGC 57.258 40.909 0.00 0.00 0.00 3.86
7696 8628 3.734463 TCGAAACATACACCAAGAAGCA 58.266 40.909 0.00 0.00 0.00 3.91
7697 8629 4.130857 TCGAAACATACACCAAGAAGCAA 58.869 39.130 0.00 0.00 0.00 3.91
7698 8630 4.576873 TCGAAACATACACCAAGAAGCAAA 59.423 37.500 0.00 0.00 0.00 3.68
7699 8631 5.066634 TCGAAACATACACCAAGAAGCAAAA 59.933 36.000 0.00 0.00 0.00 2.44
7700 8632 5.746245 CGAAACATACACCAAGAAGCAAAAA 59.254 36.000 0.00 0.00 0.00 1.94
7740 8672 9.899226 TGTGAATAGTATACAGAGAATCATTCG 57.101 33.333 5.50 0.00 37.82 3.34
7741 8673 8.855279 GTGAATAGTATACAGAGAATCATTCGC 58.145 37.037 5.50 0.00 37.82 4.70
7742 8674 8.576442 TGAATAGTATACAGAGAATCATTCGCA 58.424 33.333 5.50 0.00 37.82 5.10
7743 8675 9.411801 GAATAGTATACAGAGAATCATTCGCAA 57.588 33.333 5.50 0.00 37.82 4.85
7744 8676 8.749841 ATAGTATACAGAGAATCATTCGCAAC 57.250 34.615 5.50 0.00 37.82 4.17
7745 8677 6.810911 AGTATACAGAGAATCATTCGCAACT 58.189 36.000 5.50 0.00 37.82 3.16
7746 8678 7.941919 AGTATACAGAGAATCATTCGCAACTA 58.058 34.615 5.50 0.00 37.82 2.24
7747 8679 8.580720 AGTATACAGAGAATCATTCGCAACTAT 58.419 33.333 5.50 0.00 37.82 2.12
7748 8680 9.197694 GTATACAGAGAATCATTCGCAACTATT 57.802 33.333 3.78 0.00 37.82 1.73
7749 8681 6.595772 ACAGAGAATCATTCGCAACTATTC 57.404 37.500 3.78 0.00 37.82 1.75
7750 8682 6.108687 ACAGAGAATCATTCGCAACTATTCA 58.891 36.000 3.78 0.00 37.82 2.57
7751 8683 6.765036 ACAGAGAATCATTCGCAACTATTCAT 59.235 34.615 3.78 0.00 37.82 2.57
7752 8684 7.928167 ACAGAGAATCATTCGCAACTATTCATA 59.072 33.333 3.78 0.00 37.82 2.15
7753 8685 8.768019 CAGAGAATCATTCGCAACTATTCATAA 58.232 33.333 3.78 0.00 37.82 1.90
7754 8686 8.768955 AGAGAATCATTCGCAACTATTCATAAC 58.231 33.333 3.78 0.00 37.82 1.89
7755 8687 7.567571 AGAATCATTCGCAACTATTCATAACG 58.432 34.615 0.00 0.00 34.02 3.18
7756 8688 5.651172 TCATTCGCAACTATTCATAACGG 57.349 39.130 0.00 0.00 0.00 4.44
7757 8689 5.353111 TCATTCGCAACTATTCATAACGGA 58.647 37.500 0.00 0.00 0.00 4.69
7758 8690 5.813157 TCATTCGCAACTATTCATAACGGAA 59.187 36.000 0.00 0.00 0.00 4.30
7759 8691 6.481976 TCATTCGCAACTATTCATAACGGAAT 59.518 34.615 0.00 0.00 40.45 3.01
7760 8692 6.671614 TTCGCAACTATTCATAACGGAATT 57.328 33.333 0.00 0.00 38.41 2.17
7761 8693 6.671614 TCGCAACTATTCATAACGGAATTT 57.328 33.333 0.00 0.00 38.41 1.82
7762 8694 7.079182 TCGCAACTATTCATAACGGAATTTT 57.921 32.000 0.00 0.00 38.41 1.82
7763 8695 7.184106 TCGCAACTATTCATAACGGAATTTTC 58.816 34.615 0.00 0.00 38.41 2.29
7764 8696 7.065324 TCGCAACTATTCATAACGGAATTTTCT 59.935 33.333 0.00 0.00 38.41 2.52
7765 8697 7.696453 CGCAACTATTCATAACGGAATTTTCTT 59.304 33.333 0.00 0.00 38.41 2.52
7766 8698 9.353999 GCAACTATTCATAACGGAATTTTCTTT 57.646 29.630 0.00 0.00 38.41 2.52
7789 8721 7.621832 TTTTTGCTTCTTGATGTATGTTTCG 57.378 32.000 0.00 0.00 0.00 3.46
7790 8722 6.552859 TTTGCTTCTTGATGTATGTTTCGA 57.447 33.333 0.00 0.00 0.00 3.71
7791 8723 6.552859 TTGCTTCTTGATGTATGTTTCGAA 57.447 33.333 0.00 0.00 0.00 3.71
7792 8724 6.741992 TGCTTCTTGATGTATGTTTCGAAT 57.258 33.333 0.00 0.00 0.00 3.34
7793 8725 7.144722 TGCTTCTTGATGTATGTTTCGAATT 57.855 32.000 0.00 0.00 0.00 2.17
7794 8726 7.592938 TGCTTCTTGATGTATGTTTCGAATTT 58.407 30.769 0.00 0.00 0.00 1.82
7795 8727 8.081633 TGCTTCTTGATGTATGTTTCGAATTTT 58.918 29.630 0.00 0.00 0.00 1.82
7796 8728 8.368126 GCTTCTTGATGTATGTTTCGAATTTTG 58.632 33.333 0.00 0.00 0.00 2.44
7797 8729 9.611284 CTTCTTGATGTATGTTTCGAATTTTGA 57.389 29.630 0.00 0.00 0.00 2.69
7799 8731 9.773328 TCTTGATGTATGTTTCGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
7800 8732 9.778993 CTTGATGTATGTTTCGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
617 691 2.158813 TGTGAAGTGTGAACCTCTTCCC 60.159 50.000 10.69 3.56 37.39 3.97
861 940 2.507547 TCGGGAAACGGCGATTCG 60.508 61.111 21.04 13.06 44.45 3.34
862 941 3.087176 GTCGGGAAACGGCGATTC 58.913 61.111 19.96 19.96 44.45 2.52
1152 1234 2.599757 GGCTAGGGTTTGGTCGGGT 61.600 63.158 0.00 0.00 0.00 5.28
1323 1405 2.365237 GGGAAGCGGTAGGGGAGT 60.365 66.667 0.00 0.00 0.00 3.85
1578 1660 1.448540 GGCGATATCCATGAGGCCG 60.449 63.158 0.00 0.00 33.74 6.13
1635 1717 2.567049 AGCGCGAGGTCAGTACAC 59.433 61.111 12.10 0.00 37.07 2.90
1704 1786 2.028190 CCATACAGCGGCGAGGAG 59.972 66.667 12.98 0.00 0.00 3.69
1725 1807 0.539986 TTACCCCGCCATCTTCACTC 59.460 55.000 0.00 0.00 0.00 3.51
1821 1903 2.380941 ACAGCTGCAATGCCATCATAA 58.619 42.857 15.27 0.00 31.46 1.90
1824 1906 0.245266 CAACAGCTGCAATGCCATCA 59.755 50.000 15.27 0.00 0.00 3.07
1827 1909 2.575893 CCCAACAGCTGCAATGCCA 61.576 57.895 15.27 0.00 0.00 4.92
2219 2304 7.720957 TGTCCCCATTAGAAACAATCATGATAG 59.279 37.037 9.04 0.00 0.00 2.08
2231 2316 2.817258 CGCAAACTGTCCCCATTAGAAA 59.183 45.455 0.00 0.00 0.00 2.52
2275 2360 2.796304 TCACAGAGCAAACAAAAAGCG 58.204 42.857 0.00 0.00 0.00 4.68
2288 2373 3.250280 GGCAGCATGTCATTATCACAGAG 59.750 47.826 0.00 0.00 43.01 3.35
2334 2420 2.665649 TGTCATAGCATCCGAACGTT 57.334 45.000 0.00 0.00 0.00 3.99
2335 2421 2.866156 CAATGTCATAGCATCCGAACGT 59.134 45.455 0.00 0.00 0.00 3.99
2336 2422 3.123050 TCAATGTCATAGCATCCGAACG 58.877 45.455 0.00 0.00 0.00 3.95
2337 2423 5.679734 AATCAATGTCATAGCATCCGAAC 57.320 39.130 0.00 0.00 0.00 3.95
2338 2424 6.992123 ACTTAATCAATGTCATAGCATCCGAA 59.008 34.615 0.00 0.00 0.00 4.30
2339 2425 6.424812 CACTTAATCAATGTCATAGCATCCGA 59.575 38.462 0.00 0.00 0.00 4.55
2340 2426 6.203530 ACACTTAATCAATGTCATAGCATCCG 59.796 38.462 0.00 0.00 0.00 4.18
2341 2427 7.227314 TGACACTTAATCAATGTCATAGCATCC 59.773 37.037 2.28 0.00 45.89 3.51
2342 2428 8.146479 TGACACTTAATCAATGTCATAGCATC 57.854 34.615 2.28 0.00 45.89 3.91
2350 2436 4.843728 TCCCCTGACACTTAATCAATGTC 58.156 43.478 0.00 0.00 42.54 3.06
2351 2437 4.927267 TCCCCTGACACTTAATCAATGT 57.073 40.909 0.00 0.00 0.00 2.71
2352 2438 6.830912 TCTATCCCCTGACACTTAATCAATG 58.169 40.000 0.00 0.00 0.00 2.82
2353 2439 7.451731 TTCTATCCCCTGACACTTAATCAAT 57.548 36.000 0.00 0.00 0.00 2.57
2354 2440 6.884472 TTCTATCCCCTGACACTTAATCAA 57.116 37.500 0.00 0.00 0.00 2.57
2355 2441 6.688922 GCATTCTATCCCCTGACACTTAATCA 60.689 42.308 0.00 0.00 0.00 2.57
2356 2442 5.703130 GCATTCTATCCCCTGACACTTAATC 59.297 44.000 0.00 0.00 0.00 1.75
2357 2443 5.370880 AGCATTCTATCCCCTGACACTTAAT 59.629 40.000 0.00 0.00 0.00 1.40
2358 2444 4.721776 AGCATTCTATCCCCTGACACTTAA 59.278 41.667 0.00 0.00 0.00 1.85
2359 2445 4.298626 AGCATTCTATCCCCTGACACTTA 58.701 43.478 0.00 0.00 0.00 2.24
2393 2505 0.971959 TTCAATCATGCAGGGTGGGC 60.972 55.000 0.00 0.00 0.00 5.36
2397 2509 2.440409 GTCAGTTCAATCATGCAGGGT 58.560 47.619 0.00 0.00 0.00 4.34
2401 2513 3.367600 GCAATGGTCAGTTCAATCATGCA 60.368 43.478 0.00 0.00 0.00 3.96
2549 2663 9.220906 ACAAGATAACATACCAAGGGTATAGAA 57.779 33.333 7.56 0.00 45.97 2.10
2647 2761 9.578439 AACCTTGAATACGTTAACTACATCTAC 57.422 33.333 3.71 0.00 0.00 2.59
2680 2794 6.144563 CAGCACACTAAATATATCACCTGACG 59.855 42.308 0.00 0.00 0.00 4.35
2761 2876 8.786898 GGGAACGGTACTTTCTTTTTAATTACT 58.213 33.333 7.43 0.00 36.78 2.24
2762 2877 8.786898 AGGGAACGGTACTTTCTTTTTAATTAC 58.213 33.333 7.43 0.00 36.78 1.89
2764 2879 7.722728 AGAGGGAACGGTACTTTCTTTTTAATT 59.277 33.333 7.43 0.00 36.78 1.40
2793 2908 2.105821 AGGTTGGACGAAGGATTTGACA 59.894 45.455 0.00 0.00 32.44 3.58
2961 3076 3.681593 GGCGAAAATAGGTATATGCCCA 58.318 45.455 6.18 0.00 35.24 5.36
2994 3109 3.275143 CCAAAATAGTATGTGCCCGTGA 58.725 45.455 0.00 0.00 0.00 4.35
3020 3135 4.706608 TGCCCGTGCGTTGCCATA 62.707 61.111 0.00 0.00 41.78 2.74
3076 3191 9.886132 AGAGAAGACAGTTTACTAAAAGAAACA 57.114 29.630 0.00 0.00 37.89 2.83
3353 3470 5.703130 TCACACATGTCCAAATTATTGACGA 59.297 36.000 0.00 0.00 38.94 4.20
3359 3476 7.664552 ATTCCATCACACATGTCCAAATTAT 57.335 32.000 0.00 0.00 0.00 1.28
3605 3745 5.575157 TGTGAGGGCAATTATCTACCAAAA 58.425 37.500 0.00 0.00 0.00 2.44
3862 4003 4.025040 AGAATCCATTTGCAGAGTCACA 57.975 40.909 4.30 0.00 29.71 3.58
3944 4085 1.740585 CGACTCAAACCAAACACACCA 59.259 47.619 0.00 0.00 0.00 4.17
3964 4105 2.090524 CCGTTACGTTCCGCCTGAC 61.091 63.158 3.52 0.00 0.00 3.51
4241 4382 2.185608 GAGGAAGAGCTGCGGGAC 59.814 66.667 0.00 0.00 0.00 4.46
4247 4388 0.536260 CCACCAGAGAGGAAGAGCTG 59.464 60.000 0.00 0.00 41.22 4.24
4315 4456 3.842923 ATCTCGCAGCCCACCTCG 61.843 66.667 0.00 0.00 0.00 4.63
4373 4514 1.202582 TCTGCTCTCTTTAGGCGTGAC 59.797 52.381 0.00 0.00 0.00 3.67
4484 4625 0.895530 CTCGTCTTCCCTACTGCCAA 59.104 55.000 0.00 0.00 0.00 4.52
4500 4641 1.357258 CTGGTTGCAGCAGCTACTCG 61.357 60.000 14.53 3.61 44.33 4.18
4508 4649 3.557903 GAGCTCCCTGGTTGCAGCA 62.558 63.158 0.87 0.00 34.08 4.41
4768 4912 6.219473 TGTCCAAATTATTGACGTTTTGCAT 58.781 32.000 3.19 0.00 38.94 3.96
4939 5085 6.189859 TGGACAAGATCATTGCTAGGAAATT 58.810 36.000 0.00 0.00 0.00 1.82
4995 5141 6.656270 TCATGACAATCACTATGGATAATGGC 59.344 38.462 0.00 0.00 0.00 4.40
4996 5142 8.803397 ATCATGACAATCACTATGGATAATGG 57.197 34.615 0.00 0.00 0.00 3.16
5054 5200 6.854496 AATACTTAGTGTCAAAAACGCTCA 57.146 33.333 0.00 0.00 45.69 4.26
5097 5243 5.675538 CGAAGAATGGAAAATACTCCCTCT 58.324 41.667 0.00 0.00 34.22 3.69
5127 5274 5.932303 TCCTTATCAAGAAGTCAGTTTTCGG 59.068 40.000 0.00 0.00 0.00 4.30
5405 6185 3.620821 GCTCACCTCTCTTGTAAGAATGC 59.379 47.826 0.00 0.00 34.03 3.56
5442 6222 2.158593 TGGTTGAAGGGATGGAACGAAA 60.159 45.455 0.00 0.00 0.00 3.46
5512 6292 0.033208 TGGGTCCATTCCATTCCTGC 60.033 55.000 0.00 0.00 0.00 4.85
5545 6325 7.453126 ACCAAGTAAAATGGAATGTCATGGTTA 59.547 33.333 0.00 0.00 40.56 2.85
5637 6417 4.111916 GTTGGAGTGTTGGTGTCATTTTG 58.888 43.478 0.00 0.00 0.00 2.44
5766 6546 1.070134 GACCAGTTGGCTAGTGTCACA 59.930 52.381 5.62 0.00 39.32 3.58
5920 6804 2.480073 GCGTGCGTCTAGTTATTACCCA 60.480 50.000 0.00 0.00 0.00 4.51
5940 6824 1.181098 ATGACAAACACAGCCCAGGC 61.181 55.000 0.00 0.00 42.33 4.85
5956 6842 1.220749 GGTACCGCTGCCTGAATGA 59.779 57.895 0.00 0.00 0.00 2.57
5960 6846 4.082523 GCTGGTACCGCTGCCTGA 62.083 66.667 17.83 0.00 0.00 3.86
5965 6851 1.210155 GCAAAAGCTGGTACCGCTG 59.790 57.895 25.12 17.19 37.87 5.18
5969 6855 1.328279 AACAGGCAAAAGCTGGTACC 58.672 50.000 4.43 4.43 0.00 3.34
6125 7042 3.377172 ACACACACAAAAACTAGGACTGC 59.623 43.478 0.00 0.00 0.00 4.40
6128 7045 3.942748 TCCACACACACAAAAACTAGGAC 59.057 43.478 0.00 0.00 0.00 3.85
6249 7170 5.329399 AGGCTGTGGACCAAAATGTAATAA 58.671 37.500 0.00 0.00 0.00 1.40
6334 7255 6.693545 CCATTAGTCAAGATAAGTGAGACGAC 59.306 42.308 0.00 0.00 34.56 4.34
6335 7256 6.377429 ACCATTAGTCAAGATAAGTGAGACGA 59.623 38.462 0.00 0.00 34.56 4.20
6336 7257 6.565234 ACCATTAGTCAAGATAAGTGAGACG 58.435 40.000 0.00 0.00 34.56 4.18
6342 7263 9.331282 GCAAGATAACCATTAGTCAAGATAAGT 57.669 33.333 0.00 0.00 0.00 2.24
6343 7264 9.553064 AGCAAGATAACCATTAGTCAAGATAAG 57.447 33.333 0.00 0.00 0.00 1.73
6344 7265 9.905713 AAGCAAGATAACCATTAGTCAAGATAA 57.094 29.630 0.00 0.00 0.00 1.75
6347 7268 9.905713 AATAAGCAAGATAACCATTAGTCAAGA 57.094 29.630 0.00 0.00 0.00 3.02
6355 7276 9.034800 TCCTGAAAAATAAGCAAGATAACCATT 57.965 29.630 0.00 0.00 0.00 3.16
6362 7283 7.170965 TCACTCTCCTGAAAAATAAGCAAGAT 58.829 34.615 0.00 0.00 0.00 2.40
6366 7287 7.765695 ATTTCACTCTCCTGAAAAATAAGCA 57.234 32.000 0.00 0.00 42.14 3.91
6367 7288 7.062722 GCAATTTCACTCTCCTGAAAAATAAGC 59.937 37.037 0.00 0.00 42.14 3.09
6802 7723 1.339055 TGGACCAAAAGAGCGATCAGG 60.339 52.381 2.38 1.46 0.00 3.86
6880 7801 7.543359 AATGAAGAACTTTGATCCAAATCCA 57.457 32.000 0.00 0.00 32.70 3.41
6998 7919 6.563381 GCGTACATAAATGTTGGTTAGGATCG 60.563 42.308 0.12 0.00 41.97 3.69
7011 7934 7.754924 AGAAAATTTCTGTGGCGTACATAAATG 59.245 33.333 7.53 0.00 42.08 2.32
7112 8038 1.434188 ACAGTCAAGTCATGTGGGGA 58.566 50.000 0.00 0.00 0.00 4.81
7113 8039 1.881973 CAACAGTCAAGTCATGTGGGG 59.118 52.381 0.00 0.00 0.00 4.96
7114 8040 2.849942 TCAACAGTCAAGTCATGTGGG 58.150 47.619 0.00 0.00 0.00 4.61
7115 8041 4.320714 CCATTCAACAGTCAAGTCATGTGG 60.321 45.833 0.00 0.00 0.00 4.17
7163 8089 5.239744 TGCCTAAAAAGACGTATTTCTGCAA 59.760 36.000 8.85 0.00 0.00 4.08
7175 8101 7.201350 CGTATTTCTGCATTTGCCTAAAAAGAC 60.201 37.037 0.00 2.91 41.18 3.01
7177 8103 6.586082 ACGTATTTCTGCATTTGCCTAAAAAG 59.414 34.615 0.00 0.00 41.18 2.27
7206 8136 1.739466 ACACATTGCATCAAGTAGCCG 59.261 47.619 0.00 0.00 0.00 5.52
7221 8151 4.930963 TCAGATTTGCACGAAAAACACAT 58.069 34.783 0.00 0.00 0.00 3.21
7228 8158 3.145286 TCACCATCAGATTTGCACGAAA 58.855 40.909 0.00 0.00 0.00 3.46
7272 8202 1.594310 GCAGACTGGGAGTGAGTCC 59.406 63.158 4.26 0.00 46.10 3.85
7327 8259 3.027412 TGCAAAGGCTTTGTCTACCAAA 58.973 40.909 33.45 11.93 42.56 3.28
7330 8262 3.942130 AATGCAAAGGCTTTGTCTACC 57.058 42.857 33.45 20.49 42.56 3.18
7357 8289 4.880886 AAAATGCAAAGGCTTTTGTCAC 57.119 36.364 20.83 6.78 43.96 3.67
7377 8309 8.180920 GCAAAGGCTTTTGTCTCAAAATAAAAA 58.819 29.630 20.83 0.00 44.41 1.94
7378 8310 7.335422 TGCAAAGGCTTTTGTCTCAAAATAAAA 59.665 29.630 20.83 0.00 44.41 1.52
7379 8311 6.820656 TGCAAAGGCTTTTGTCTCAAAATAAA 59.179 30.769 20.83 0.00 44.41 1.40
7380 8312 6.344500 TGCAAAGGCTTTTGTCTCAAAATAA 58.656 32.000 20.83 0.00 44.41 1.40
7381 8313 5.911752 TGCAAAGGCTTTTGTCTCAAAATA 58.088 33.333 20.83 0.00 44.41 1.40
7382 8314 4.768583 TGCAAAGGCTTTTGTCTCAAAAT 58.231 34.783 20.83 0.00 44.41 1.82
7383 8315 4.199432 TGCAAAGGCTTTTGTCTCAAAA 57.801 36.364 20.83 7.31 44.41 2.44
7384 8316 3.883830 TGCAAAGGCTTTTGTCTCAAA 57.116 38.095 20.83 0.27 44.41 2.69
7385 8317 4.405116 AATGCAAAGGCTTTTGTCTCAA 57.595 36.364 20.83 4.64 44.41 3.02
7386 8318 4.405116 AAATGCAAAGGCTTTTGTCTCA 57.595 36.364 20.83 11.83 43.34 3.27
7387 8319 5.739752 AAAAATGCAAAGGCTTTTGTCTC 57.260 34.783 20.83 6.78 43.96 3.36
7407 8339 8.180920 GCAAAGGCTTTTGTCTCAAAATAAAAA 58.819 29.630 20.83 0.00 44.41 1.94
7408 8340 7.335422 TGCAAAGGCTTTTGTCTCAAAATAAAA 59.665 29.630 20.83 0.00 44.41 1.52
7409 8341 6.820656 TGCAAAGGCTTTTGTCTCAAAATAAA 59.179 30.769 20.83 0.00 44.41 1.40
7410 8342 6.344500 TGCAAAGGCTTTTGTCTCAAAATAA 58.656 32.000 20.83 0.00 44.41 1.40
7411 8343 5.911752 TGCAAAGGCTTTTGTCTCAAAATA 58.088 33.333 20.83 0.00 44.41 1.40
7412 8344 4.768583 TGCAAAGGCTTTTGTCTCAAAAT 58.231 34.783 20.83 0.00 44.41 1.82
7413 8345 4.199432 TGCAAAGGCTTTTGTCTCAAAA 57.801 36.364 20.83 7.31 44.41 2.44
7414 8346 3.883830 TGCAAAGGCTTTTGTCTCAAA 57.116 38.095 20.83 0.27 44.41 2.69
7415 8347 4.405116 AATGCAAAGGCTTTTGTCTCAA 57.595 36.364 20.83 4.64 44.41 3.02
7416 8348 4.405116 AAATGCAAAGGCTTTTGTCTCA 57.595 36.364 20.83 11.83 43.34 3.27
7417 8349 5.739752 AAAAATGCAAAGGCTTTTGTCTC 57.260 34.783 20.83 6.78 43.96 3.36
7437 8369 8.180920 GCAAAGGCTTTTGTCTCAAAATAAAAA 58.819 29.630 20.83 0.00 44.41 1.94
7438 8370 7.335422 TGCAAAGGCTTTTGTCTCAAAATAAAA 59.665 29.630 20.83 0.00 44.41 1.52
7439 8371 6.820656 TGCAAAGGCTTTTGTCTCAAAATAAA 59.179 30.769 20.83 0.00 44.41 1.40
7440 8372 6.344500 TGCAAAGGCTTTTGTCTCAAAATAA 58.656 32.000 20.83 0.00 44.41 1.40
7441 8373 5.911752 TGCAAAGGCTTTTGTCTCAAAATA 58.088 33.333 20.83 0.00 44.41 1.40
7442 8374 4.768583 TGCAAAGGCTTTTGTCTCAAAAT 58.231 34.783 20.83 0.00 44.41 1.82
7443 8375 4.199432 TGCAAAGGCTTTTGTCTCAAAA 57.801 36.364 20.83 7.31 44.41 2.44
7444 8376 3.883830 TGCAAAGGCTTTTGTCTCAAA 57.116 38.095 20.83 0.27 44.41 2.69
7445 8377 4.405116 AATGCAAAGGCTTTTGTCTCAA 57.595 36.364 20.83 4.64 44.41 3.02
7446 8378 4.405116 AAATGCAAAGGCTTTTGTCTCA 57.595 36.364 20.83 11.83 43.34 3.27
7488 8420 3.057019 CCTGTTCGTGACATCGAGAAAA 58.943 45.455 0.00 0.00 40.86 2.29
7495 8427 1.819288 TCCTCTCCTGTTCGTGACATC 59.181 52.381 0.00 0.00 37.69 3.06
7496 8428 1.821753 CTCCTCTCCTGTTCGTGACAT 59.178 52.381 0.00 0.00 37.69 3.06
7541 8473 0.178906 TGTCACCTGATCCCTGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
7542 8474 1.134280 CATGTCACCTGATCCCTGTCC 60.134 57.143 0.00 0.00 0.00 4.02
7543 8475 1.556911 ACATGTCACCTGATCCCTGTC 59.443 52.381 0.00 0.00 0.00 3.51
7544 8476 1.556911 GACATGTCACCTGATCCCTGT 59.443 52.381 21.07 0.00 0.00 4.00
7545 8477 1.556451 TGACATGTCACCTGATCCCTG 59.444 52.381 24.56 0.00 34.14 4.45
7546 8478 1.956869 TGACATGTCACCTGATCCCT 58.043 50.000 24.56 0.00 34.14 4.20
7563 8495 2.279851 CCGCAAGTCACACGGTGA 60.280 61.111 16.29 0.00 42.01 4.02
7567 8499 1.225376 TTTAGGCCGCAAGTCACACG 61.225 55.000 0.00 0.00 0.00 4.49
7568 8500 1.165270 ATTTAGGCCGCAAGTCACAC 58.835 50.000 0.00 0.00 0.00 3.82
7569 8501 1.810151 GAATTTAGGCCGCAAGTCACA 59.190 47.619 11.25 0.00 0.00 3.58
7570 8502 1.810151 TGAATTTAGGCCGCAAGTCAC 59.190 47.619 13.97 2.46 0.00 3.67
7571 8503 2.192664 TGAATTTAGGCCGCAAGTCA 57.807 45.000 13.97 13.97 0.00 3.41
7572 8504 5.438761 AATATGAATTTAGGCCGCAAGTC 57.561 39.130 9.68 9.68 0.00 3.01
7573 8505 5.852282 AAATATGAATTTAGGCCGCAAGT 57.148 34.783 0.00 0.00 33.45 3.16
7574 8506 7.704472 TGTTTAAATATGAATTTAGGCCGCAAG 59.296 33.333 0.00 0.00 38.48 4.01
7575 8507 7.548097 TGTTTAAATATGAATTTAGGCCGCAA 58.452 30.769 0.00 0.00 38.48 4.85
7576 8508 7.101652 TGTTTAAATATGAATTTAGGCCGCA 57.898 32.000 0.00 0.00 38.48 5.69
7577 8509 8.487176 CAATGTTTAAATATGAATTTAGGCCGC 58.513 33.333 0.00 0.00 38.48 6.53
7578 8510 9.528018 ACAATGTTTAAATATGAATTTAGGCCG 57.472 29.630 0.00 0.00 38.48 6.13
7617 8549 8.951787 ATATGTGCTATGAACATGCAATTTTT 57.048 26.923 0.00 0.00 38.67 1.94
7618 8550 8.951787 AATATGTGCTATGAACATGCAATTTT 57.048 26.923 0.00 0.00 38.67 1.82
7620 8552 9.687210 CTTAATATGTGCTATGAACATGCAATT 57.313 29.630 0.00 10.40 38.67 2.32
7621 8553 9.070179 TCTTAATATGTGCTATGAACATGCAAT 57.930 29.630 0.00 10.05 38.67 3.56
7622 8554 8.449251 TCTTAATATGTGCTATGAACATGCAA 57.551 30.769 0.00 5.65 38.67 4.08
7623 8555 8.625786 ATCTTAATATGTGCTATGAACATGCA 57.374 30.769 1.67 0.00 38.67 3.96
7663 8595 9.967346 TGGTGTATGTTTCGAATTTTGATTTTA 57.033 25.926 0.00 0.00 0.00 1.52
7664 8596 8.879342 TGGTGTATGTTTCGAATTTTGATTTT 57.121 26.923 0.00 0.00 0.00 1.82
7665 8597 8.879342 TTGGTGTATGTTTCGAATTTTGATTT 57.121 26.923 0.00 0.00 0.00 2.17
7666 8598 8.356657 TCTTGGTGTATGTTTCGAATTTTGATT 58.643 29.630 0.00 0.00 0.00 2.57
7667 8599 7.881142 TCTTGGTGTATGTTTCGAATTTTGAT 58.119 30.769 0.00 0.00 0.00 2.57
7668 8600 7.265647 TCTTGGTGTATGTTTCGAATTTTGA 57.734 32.000 0.00 0.00 0.00 2.69
7669 8601 7.358352 GCTTCTTGGTGTATGTTTCGAATTTTG 60.358 37.037 0.00 0.00 0.00 2.44
7670 8602 6.640907 GCTTCTTGGTGTATGTTTCGAATTTT 59.359 34.615 0.00 0.00 0.00 1.82
7671 8603 6.149633 GCTTCTTGGTGTATGTTTCGAATTT 58.850 36.000 0.00 0.00 0.00 1.82
7672 8604 5.240623 TGCTTCTTGGTGTATGTTTCGAATT 59.759 36.000 0.00 0.00 0.00 2.17
7673 8605 4.759693 TGCTTCTTGGTGTATGTTTCGAAT 59.240 37.500 0.00 0.00 0.00 3.34
7674 8606 4.130857 TGCTTCTTGGTGTATGTTTCGAA 58.869 39.130 0.00 0.00 0.00 3.71
7675 8607 3.734463 TGCTTCTTGGTGTATGTTTCGA 58.266 40.909 0.00 0.00 0.00 3.71
7676 8608 4.481930 TTGCTTCTTGGTGTATGTTTCG 57.518 40.909 0.00 0.00 0.00 3.46
7714 8646 9.899226 CGAATGATTCTCTGTATACTATTCACA 57.101 33.333 4.17 0.00 0.00 3.58
7715 8647 8.855279 GCGAATGATTCTCTGTATACTATTCAC 58.145 37.037 4.17 0.00 0.00 3.18
7716 8648 8.576442 TGCGAATGATTCTCTGTATACTATTCA 58.424 33.333 4.17 0.17 0.00 2.57
7717 8649 8.972262 TGCGAATGATTCTCTGTATACTATTC 57.028 34.615 4.17 0.00 0.00 1.75
7718 8650 9.197694 GTTGCGAATGATTCTCTGTATACTATT 57.802 33.333 4.17 0.00 0.00 1.73
7719 8651 8.580720 AGTTGCGAATGATTCTCTGTATACTAT 58.419 33.333 4.17 0.00 0.00 2.12
7720 8652 7.941919 AGTTGCGAATGATTCTCTGTATACTA 58.058 34.615 4.17 0.00 0.00 1.82
7721 8653 6.810911 AGTTGCGAATGATTCTCTGTATACT 58.189 36.000 4.17 0.00 0.00 2.12
7722 8654 8.749841 ATAGTTGCGAATGATTCTCTGTATAC 57.250 34.615 3.43 0.00 0.00 1.47
7723 8655 9.411801 GAATAGTTGCGAATGATTCTCTGTATA 57.588 33.333 3.43 0.00 0.00 1.47
7724 8656 7.928167 TGAATAGTTGCGAATGATTCTCTGTAT 59.072 33.333 3.43 0.00 0.00 2.29
7725 8657 7.264947 TGAATAGTTGCGAATGATTCTCTGTA 58.735 34.615 3.43 0.00 0.00 2.74
7726 8658 6.108687 TGAATAGTTGCGAATGATTCTCTGT 58.891 36.000 3.43 0.00 0.00 3.41
7727 8659 6.594284 TGAATAGTTGCGAATGATTCTCTG 57.406 37.500 3.43 0.00 0.00 3.35
7728 8660 8.768955 GTTATGAATAGTTGCGAATGATTCTCT 58.231 33.333 3.43 0.12 0.00 3.10
7729 8661 7.737744 CGTTATGAATAGTTGCGAATGATTCTC 59.262 37.037 3.43 0.00 0.00 2.87
7730 8662 7.307396 CCGTTATGAATAGTTGCGAATGATTCT 60.307 37.037 3.43 0.00 0.00 2.40
7731 8663 6.792250 CCGTTATGAATAGTTGCGAATGATTC 59.208 38.462 0.00 0.00 0.00 2.52
7732 8664 6.481976 TCCGTTATGAATAGTTGCGAATGATT 59.518 34.615 0.00 0.00 0.00 2.57
7733 8665 5.989168 TCCGTTATGAATAGTTGCGAATGAT 59.011 36.000 0.00 0.00 0.00 2.45
7734 8666 5.353111 TCCGTTATGAATAGTTGCGAATGA 58.647 37.500 0.00 0.00 0.00 2.57
7735 8667 5.651172 TCCGTTATGAATAGTTGCGAATG 57.349 39.130 0.00 0.00 0.00 2.67
7736 8668 6.861065 ATTCCGTTATGAATAGTTGCGAAT 57.139 33.333 0.00 0.00 33.27 3.34
7737 8669 6.671614 AATTCCGTTATGAATAGTTGCGAA 57.328 33.333 0.00 0.00 33.91 4.70
7738 8670 6.671614 AAATTCCGTTATGAATAGTTGCGA 57.328 33.333 0.00 0.00 33.91 5.10
7739 8671 7.186804 AGAAAATTCCGTTATGAATAGTTGCG 58.813 34.615 0.00 0.00 33.91 4.85
7740 8672 8.911247 AAGAAAATTCCGTTATGAATAGTTGC 57.089 30.769 0.00 0.00 33.91 4.17
7765 8697 7.421599 TCGAAACATACATCAAGAAGCAAAAA 58.578 30.769 0.00 0.00 0.00 1.94
7766 8698 6.964908 TCGAAACATACATCAAGAAGCAAAA 58.035 32.000 0.00 0.00 0.00 2.44
7767 8699 6.552859 TCGAAACATACATCAAGAAGCAAA 57.447 33.333 0.00 0.00 0.00 3.68
7768 8700 6.552859 TTCGAAACATACATCAAGAAGCAA 57.447 33.333 0.00 0.00 0.00 3.91
7769 8701 6.741992 ATTCGAAACATACATCAAGAAGCA 57.258 33.333 0.00 0.00 0.00 3.91
7770 8702 8.368126 CAAAATTCGAAACATACATCAAGAAGC 58.632 33.333 0.00 0.00 0.00 3.86
7771 8703 9.611284 TCAAAATTCGAAACATACATCAAGAAG 57.389 29.630 0.00 0.00 0.00 2.85
7773 8705 9.773328 GATCAAAATTCGAAACATACATCAAGA 57.227 29.630 0.00 0.00 0.00 3.02
7774 8706 9.778993 AGATCAAAATTCGAAACATACATCAAG 57.221 29.630 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.