Multiple sequence alignment - TraesCS6A01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G249500 chr6A 100.000 2369 0 0 1 2369 462595185 462592817 0.000000e+00 4375
1 TraesCS6A01G249500 chr6A 96.839 601 17 2 1 600 65941912 65941313 0.000000e+00 1003
2 TraesCS6A01G249500 chr7B 98.887 1528 14 3 599 2125 721298086 721299611 0.000000e+00 2724
3 TraesCS6A01G249500 chr7B 94.262 244 13 1 2126 2369 160613249 160613007 2.880000e-99 372
4 TraesCS6A01G249500 chr2A 98.627 1529 19 2 599 2125 590787112 590785584 0.000000e+00 2706
5 TraesCS6A01G249500 chr2A 95.623 1325 45 5 813 2125 441097380 441098703 0.000000e+00 2113
6 TraesCS6A01G249500 chr2A 96.844 602 16 3 1 600 615422375 615422975 0.000000e+00 1003
7 TraesCS6A01G249500 chr2A 99.180 244 2 0 2126 2369 164745511 164745268 7.770000e-120 440
8 TraesCS6A01G249500 chr2A 99.180 244 2 0 2126 2369 755374671 755374914 7.770000e-120 440
9 TraesCS6A01G249500 chr2A 87.649 251 22 5 2126 2368 103211440 103211689 1.390000e-72 283
10 TraesCS6A01G249500 chr2A 90.395 177 14 3 599 774 284737600 284737774 1.830000e-56 230
11 TraesCS6A01G249500 chr3B 98.560 1528 20 2 600 2125 169349155 169347628 0.000000e+00 2699
12 TraesCS6A01G249500 chr3B 98.865 1410 14 2 608 2015 793118618 793120027 0.000000e+00 2514
13 TraesCS6A01G249500 chr3A 98.683 1519 18 2 609 2125 721633093 721631575 0.000000e+00 2693
14 TraesCS6A01G249500 chr3A 88.048 251 21 5 2126 2368 459073026 459072777 2.980000e-74 289
15 TraesCS6A01G249500 chr6B 98.366 1530 22 3 599 2125 474539979 474541508 0.000000e+00 2684
16 TraesCS6A01G249500 chr1A 98.091 1519 28 1 608 2125 335115466 335116984 0.000000e+00 2643
17 TraesCS6A01G249500 chr1A 97.005 601 16 2 1 600 246769449 246768850 0.000000e+00 1009
18 TraesCS6A01G249500 chr1A 96.849 603 15 4 1 600 233417672 233418273 0.000000e+00 1005
19 TraesCS6A01G249500 chr4A 96.086 1533 54 4 599 2125 540821708 540823240 0.000000e+00 2494
20 TraesCS6A01G249500 chr4A 97.131 244 7 0 2126 2369 83703834 83703591 1.690000e-111 412
21 TraesCS6A01G249500 chr7A 97.185 604 13 4 1 600 625263289 625263892 0.000000e+00 1018
22 TraesCS6A01G249500 chr7A 96.844 602 17 2 1 600 342214798 342215399 0.000000e+00 1005
23 TraesCS6A01G249500 chr7A 96.839 601 18 1 1 600 344568964 344568364 0.000000e+00 1003
24 TraesCS6A01G249500 chr7A 96.839 601 17 2 1 600 570068007 570068606 0.000000e+00 1003
25 TraesCS6A01G249500 chr5A 96.844 602 16 3 1 600 267728340 267727740 0.000000e+00 1003
26 TraesCS6A01G249500 chr1D 96.721 244 8 0 2126 2369 270823083 270822840 7.880000e-110 407
27 TraesCS6A01G249500 chr6D 90.947 243 21 1 2126 2368 217171150 217170909 2.270000e-85 326
28 TraesCS6A01G249500 chr6D 92.121 165 13 0 2204 2368 260810747 260810583 1.420000e-57 233
29 TraesCS6A01G249500 chr2D 89.669 242 23 1 2126 2367 639856808 639856569 8.220000e-80 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G249500 chr6A 462592817 462595185 2368 True 4375 4375 100.000 1 2369 1 chr6A.!!$R2 2368
1 TraesCS6A01G249500 chr6A 65941313 65941912 599 True 1003 1003 96.839 1 600 1 chr6A.!!$R1 599
2 TraesCS6A01G249500 chr7B 721298086 721299611 1525 False 2724 2724 98.887 599 2125 1 chr7B.!!$F1 1526
3 TraesCS6A01G249500 chr2A 590785584 590787112 1528 True 2706 2706 98.627 599 2125 1 chr2A.!!$R2 1526
4 TraesCS6A01G249500 chr2A 441097380 441098703 1323 False 2113 2113 95.623 813 2125 1 chr2A.!!$F3 1312
5 TraesCS6A01G249500 chr2A 615422375 615422975 600 False 1003 1003 96.844 1 600 1 chr2A.!!$F4 599
6 TraesCS6A01G249500 chr3B 169347628 169349155 1527 True 2699 2699 98.560 600 2125 1 chr3B.!!$R1 1525
7 TraesCS6A01G249500 chr3B 793118618 793120027 1409 False 2514 2514 98.865 608 2015 1 chr3B.!!$F1 1407
8 TraesCS6A01G249500 chr3A 721631575 721633093 1518 True 2693 2693 98.683 609 2125 1 chr3A.!!$R2 1516
9 TraesCS6A01G249500 chr6B 474539979 474541508 1529 False 2684 2684 98.366 599 2125 1 chr6B.!!$F1 1526
10 TraesCS6A01G249500 chr1A 335115466 335116984 1518 False 2643 2643 98.091 608 2125 1 chr1A.!!$F2 1517
11 TraesCS6A01G249500 chr1A 246768850 246769449 599 True 1009 1009 97.005 1 600 1 chr1A.!!$R1 599
12 TraesCS6A01G249500 chr1A 233417672 233418273 601 False 1005 1005 96.849 1 600 1 chr1A.!!$F1 599
13 TraesCS6A01G249500 chr4A 540821708 540823240 1532 False 2494 2494 96.086 599 2125 1 chr4A.!!$F1 1526
14 TraesCS6A01G249500 chr7A 625263289 625263892 603 False 1018 1018 97.185 1 600 1 chr7A.!!$F3 599
15 TraesCS6A01G249500 chr7A 342214798 342215399 601 False 1005 1005 96.844 1 600 1 chr7A.!!$F1 599
16 TraesCS6A01G249500 chr7A 344568364 344568964 600 True 1003 1003 96.839 1 600 1 chr7A.!!$R1 599
17 TraesCS6A01G249500 chr7A 570068007 570068606 599 False 1003 1003 96.839 1 600 1 chr7A.!!$F2 599
18 TraesCS6A01G249500 chr5A 267727740 267728340 600 True 1003 1003 96.844 1 600 1 chr5A.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 833 1.070134 CACGACCAAAGGAGGAGAACA 59.93 52.381 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2291 2321 0.032678 CAGGTGAAGTGAGCGTCAGT 59.967 55.0 0.0 0.0 33.99 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 2.039418 TCCTACAGTCAGTGTGTGCTT 58.961 47.619 0.00 0.00 40.69 3.91
208 210 8.908786 TTACATCAAGTGTCTCAAAAGAGAAT 57.091 30.769 0.00 0.00 42.29 2.40
413 419 1.247567 ATGCTGGCAAGGTAACACAC 58.752 50.000 0.00 0.00 41.41 3.82
459 465 9.334947 CAGCTATACTATATGCATATTTGGCTT 57.665 33.333 23.71 7.87 0.00 4.35
818 833 1.070134 CACGACCAAAGGAGGAGAACA 59.930 52.381 0.00 0.00 0.00 3.18
944 960 1.227946 GAGTCCGCTCCTCCCTACT 59.772 63.158 0.00 0.00 35.76 2.57
952 968 2.002018 CTCCTCCCTACTCTCCGGCT 62.002 65.000 0.00 0.00 0.00 5.52
1039 1055 3.816524 CTTCGCCGGCTCGTCTCT 61.817 66.667 26.68 0.00 0.00 3.10
1722 1748 6.325804 TGATATCTACATGGCTGCTATGCTAT 59.674 38.462 23.58 16.50 34.46 2.97
1871 1901 5.763698 GGTATGTATCCCCTTGAAAGCTAAC 59.236 44.000 0.00 0.00 0.00 2.34
2137 2167 4.192317 GTGGAACAATAACTCCTGCTAGG 58.808 47.826 0.00 0.00 44.16 3.02
2138 2168 4.081087 GTGGAACAATAACTCCTGCTAGGA 60.081 45.833 5.03 5.03 44.16 2.94
2145 2175 3.976593 TCCTGCTAGGAGGGCATG 58.023 61.111 28.13 4.34 40.06 4.06
2146 2176 1.767672 TCCTGCTAGGAGGGCATGG 60.768 63.158 28.13 4.52 40.06 3.66
2147 2177 1.767672 CCTGCTAGGAGGGCATGGA 60.768 63.158 22.15 0.00 37.67 3.41
2148 2178 1.753470 CTGCTAGGAGGGCATGGAG 59.247 63.158 2.75 0.00 39.07 3.86
2149 2179 1.766625 CTGCTAGGAGGGCATGGAGG 61.767 65.000 2.75 0.00 39.07 4.30
2150 2180 1.460305 GCTAGGAGGGCATGGAGGA 60.460 63.158 0.00 0.00 0.00 3.71
2151 2181 1.479368 GCTAGGAGGGCATGGAGGAG 61.479 65.000 0.00 0.00 0.00 3.69
2152 2182 0.105246 CTAGGAGGGCATGGAGGAGT 60.105 60.000 0.00 0.00 0.00 3.85
2153 2183 0.343372 TAGGAGGGCATGGAGGAGTT 59.657 55.000 0.00 0.00 0.00 3.01
2154 2184 0.551131 AGGAGGGCATGGAGGAGTTT 60.551 55.000 0.00 0.00 0.00 2.66
2155 2185 0.106967 GGAGGGCATGGAGGAGTTTC 60.107 60.000 0.00 0.00 0.00 2.78
2156 2186 0.106967 GAGGGCATGGAGGAGTTTCC 60.107 60.000 0.00 0.00 37.77 3.13
2157 2187 1.076705 GGGCATGGAGGAGTTTCCC 60.077 63.158 0.00 0.00 37.19 3.97
2158 2188 1.076705 GGCATGGAGGAGTTTCCCC 60.077 63.158 0.00 0.00 37.19 4.81
2159 2189 1.575447 GGCATGGAGGAGTTTCCCCT 61.575 60.000 0.00 0.00 37.19 4.79
2160 2190 0.332972 GCATGGAGGAGTTTCCCCTT 59.667 55.000 0.00 0.00 37.19 3.95
2161 2191 1.957113 GCATGGAGGAGTTTCCCCTTG 60.957 57.143 0.00 11.08 37.19 3.61
2162 2192 1.635487 CATGGAGGAGTTTCCCCTTGA 59.365 52.381 10.39 0.00 37.19 3.02
2163 2193 1.827792 TGGAGGAGTTTCCCCTTGAA 58.172 50.000 0.00 0.00 37.19 2.69
2164 2194 1.423921 TGGAGGAGTTTCCCCTTGAAC 59.576 52.381 0.00 0.00 37.19 3.18
2165 2195 1.705745 GGAGGAGTTTCCCCTTGAACT 59.294 52.381 0.00 0.00 37.19 3.01
2166 2196 2.290387 GGAGGAGTTTCCCCTTGAACTC 60.290 54.545 7.51 7.51 37.19 3.01
2167 2197 1.705745 AGGAGTTTCCCCTTGAACTCC 59.294 52.381 21.67 21.67 43.86 3.85
2168 2198 1.423921 GGAGTTTCCCCTTGAACTCCA 59.576 52.381 23.36 0.00 43.47 3.86
2169 2199 2.505405 GAGTTTCCCCTTGAACTCCAC 58.495 52.381 5.21 0.00 31.05 4.02
2170 2200 1.202770 AGTTTCCCCTTGAACTCCACG 60.203 52.381 0.00 0.00 31.05 4.94
2171 2201 1.133363 TTTCCCCTTGAACTCCACGA 58.867 50.000 0.00 0.00 31.05 4.35
2172 2202 0.395312 TTCCCCTTGAACTCCACGAC 59.605 55.000 0.00 0.00 0.00 4.34
2173 2203 1.003718 CCCCTTGAACTCCACGACC 60.004 63.158 0.00 0.00 0.00 4.79
2174 2204 1.481056 CCCCTTGAACTCCACGACCT 61.481 60.000 0.00 0.00 0.00 3.85
2175 2205 0.320771 CCCTTGAACTCCACGACCTG 60.321 60.000 0.00 0.00 0.00 4.00
2176 2206 0.679505 CCTTGAACTCCACGACCTGA 59.320 55.000 0.00 0.00 0.00 3.86
2177 2207 1.276421 CCTTGAACTCCACGACCTGAT 59.724 52.381 0.00 0.00 0.00 2.90
2178 2208 2.289694 CCTTGAACTCCACGACCTGATT 60.290 50.000 0.00 0.00 0.00 2.57
2179 2209 2.743636 TGAACTCCACGACCTGATTC 57.256 50.000 0.00 0.00 0.00 2.52
2180 2210 2.248248 TGAACTCCACGACCTGATTCT 58.752 47.619 0.00 0.00 0.00 2.40
2181 2211 2.231478 TGAACTCCACGACCTGATTCTC 59.769 50.000 0.00 0.00 0.00 2.87
2182 2212 1.924731 ACTCCACGACCTGATTCTCA 58.075 50.000 0.00 0.00 0.00 3.27
2183 2213 1.821753 ACTCCACGACCTGATTCTCAG 59.178 52.381 0.00 0.00 43.91 3.35
2198 2228 8.077836 CTGATTCTCAGGTTCGTAATTTATCC 57.922 38.462 0.00 0.00 40.71 2.59
2199 2229 7.792032 TGATTCTCAGGTTCGTAATTTATCCT 58.208 34.615 0.00 0.00 0.00 3.24
2200 2230 8.920174 TGATTCTCAGGTTCGTAATTTATCCTA 58.080 33.333 0.00 0.00 0.00 2.94
2201 2231 9.930693 GATTCTCAGGTTCGTAATTTATCCTAT 57.069 33.333 0.00 0.00 0.00 2.57
2221 2251 1.938625 TTTTTGGCTGTTGCTTGCTC 58.061 45.000 0.00 0.00 39.59 4.26
2222 2252 0.104671 TTTTGGCTGTTGCTTGCTCC 59.895 50.000 0.00 0.00 39.59 4.70
2223 2253 0.756442 TTTGGCTGTTGCTTGCTCCT 60.756 50.000 0.00 0.00 39.59 3.69
2224 2254 0.756442 TTGGCTGTTGCTTGCTCCTT 60.756 50.000 0.00 0.00 39.59 3.36
2225 2255 0.756442 TGGCTGTTGCTTGCTCCTTT 60.756 50.000 0.00 0.00 39.59 3.11
2226 2256 0.319297 GGCTGTTGCTTGCTCCTTTG 60.319 55.000 0.00 0.00 39.59 2.77
2227 2257 0.386838 GCTGTTGCTTGCTCCTTTGT 59.613 50.000 0.00 0.00 36.03 2.83
2228 2258 1.202452 GCTGTTGCTTGCTCCTTTGTT 60.202 47.619 0.00 0.00 36.03 2.83
2229 2259 2.739609 GCTGTTGCTTGCTCCTTTGTTT 60.740 45.455 0.00 0.00 36.03 2.83
2230 2260 3.118542 CTGTTGCTTGCTCCTTTGTTTC 58.881 45.455 0.00 0.00 0.00 2.78
2231 2261 2.760092 TGTTGCTTGCTCCTTTGTTTCT 59.240 40.909 0.00 0.00 0.00 2.52
2232 2262 3.195396 TGTTGCTTGCTCCTTTGTTTCTT 59.805 39.130 0.00 0.00 0.00 2.52
2233 2263 4.183865 GTTGCTTGCTCCTTTGTTTCTTT 58.816 39.130 0.00 0.00 0.00 2.52
2234 2264 3.784338 TGCTTGCTCCTTTGTTTCTTTG 58.216 40.909 0.00 0.00 0.00 2.77
2235 2265 3.195396 TGCTTGCTCCTTTGTTTCTTTGT 59.805 39.130 0.00 0.00 0.00 2.83
2236 2266 4.400884 TGCTTGCTCCTTTGTTTCTTTGTA 59.599 37.500 0.00 0.00 0.00 2.41
2237 2267 4.978580 GCTTGCTCCTTTGTTTCTTTGTAG 59.021 41.667 0.00 0.00 0.00 2.74
2238 2268 5.221048 GCTTGCTCCTTTGTTTCTTTGTAGA 60.221 40.000 0.00 0.00 0.00 2.59
2239 2269 6.515696 GCTTGCTCCTTTGTTTCTTTGTAGAT 60.516 38.462 0.00 0.00 0.00 1.98
2240 2270 6.317789 TGCTCCTTTGTTTCTTTGTAGATG 57.682 37.500 0.00 0.00 0.00 2.90
2241 2271 5.827797 TGCTCCTTTGTTTCTTTGTAGATGT 59.172 36.000 0.00 0.00 0.00 3.06
2242 2272 6.321181 TGCTCCTTTGTTTCTTTGTAGATGTT 59.679 34.615 0.00 0.00 0.00 2.71
2243 2273 6.858478 GCTCCTTTGTTTCTTTGTAGATGTTC 59.142 38.462 0.00 0.00 0.00 3.18
2244 2274 7.255277 GCTCCTTTGTTTCTTTGTAGATGTTCT 60.255 37.037 0.00 0.00 0.00 3.01
2245 2275 7.930217 TCCTTTGTTTCTTTGTAGATGTTCTG 58.070 34.615 0.00 0.00 0.00 3.02
2246 2276 7.773224 TCCTTTGTTTCTTTGTAGATGTTCTGA 59.227 33.333 0.00 0.00 0.00 3.27
2247 2277 8.571336 CCTTTGTTTCTTTGTAGATGTTCTGAT 58.429 33.333 0.00 0.00 0.00 2.90
2248 2278 9.956720 CTTTGTTTCTTTGTAGATGTTCTGATT 57.043 29.630 0.00 0.00 0.00 2.57
2254 2284 9.739276 TTCTTTGTAGATGTTCTGATTATTGGT 57.261 29.630 0.00 0.00 0.00 3.67
2255 2285 9.166173 TCTTTGTAGATGTTCTGATTATTGGTG 57.834 33.333 0.00 0.00 0.00 4.17
2256 2286 6.925610 TGTAGATGTTCTGATTATTGGTGC 57.074 37.500 0.00 0.00 0.00 5.01
2257 2287 6.653020 TGTAGATGTTCTGATTATTGGTGCT 58.347 36.000 0.00 0.00 0.00 4.40
2258 2288 7.112122 TGTAGATGTTCTGATTATTGGTGCTT 58.888 34.615 0.00 0.00 0.00 3.91
2259 2289 7.611467 TGTAGATGTTCTGATTATTGGTGCTTT 59.389 33.333 0.00 0.00 0.00 3.51
2260 2290 6.860080 AGATGTTCTGATTATTGGTGCTTTG 58.140 36.000 0.00 0.00 0.00 2.77
2261 2291 5.389859 TGTTCTGATTATTGGTGCTTTGG 57.610 39.130 0.00 0.00 0.00 3.28
2262 2292 5.076182 TGTTCTGATTATTGGTGCTTTGGA 58.924 37.500 0.00 0.00 0.00 3.53
2263 2293 5.538053 TGTTCTGATTATTGGTGCTTTGGAA 59.462 36.000 0.00 0.00 0.00 3.53
2264 2294 5.643379 TCTGATTATTGGTGCTTTGGAAC 57.357 39.130 0.00 0.00 0.00 3.62
2265 2295 5.324409 TCTGATTATTGGTGCTTTGGAACT 58.676 37.500 0.00 0.00 0.00 3.01
2266 2296 5.415701 TCTGATTATTGGTGCTTTGGAACTC 59.584 40.000 0.00 0.00 0.00 3.01
2267 2297 5.324409 TGATTATTGGTGCTTTGGAACTCT 58.676 37.500 0.00 0.00 0.00 3.24
2268 2298 5.774690 TGATTATTGGTGCTTTGGAACTCTT 59.225 36.000 0.00 0.00 0.00 2.85
2269 2299 5.452078 TTATTGGTGCTTTGGAACTCTTG 57.548 39.130 0.00 0.00 0.00 3.02
2270 2300 2.435372 TGGTGCTTTGGAACTCTTGT 57.565 45.000 0.00 0.00 0.00 3.16
2271 2301 2.023673 TGGTGCTTTGGAACTCTTGTG 58.976 47.619 0.00 0.00 0.00 3.33
2272 2302 1.338020 GGTGCTTTGGAACTCTTGTGG 59.662 52.381 0.00 0.00 0.00 4.17
2273 2303 2.024414 GTGCTTTGGAACTCTTGTGGT 58.976 47.619 0.00 0.00 0.00 4.16
2274 2304 2.033424 GTGCTTTGGAACTCTTGTGGTC 59.967 50.000 0.00 0.00 0.00 4.02
2275 2305 2.092429 TGCTTTGGAACTCTTGTGGTCT 60.092 45.455 0.00 0.00 0.00 3.85
2276 2306 2.291741 GCTTTGGAACTCTTGTGGTCTG 59.708 50.000 0.00 0.00 0.00 3.51
2277 2307 3.545703 CTTTGGAACTCTTGTGGTCTGT 58.454 45.455 0.00 0.00 0.00 3.41
2278 2308 4.703897 CTTTGGAACTCTTGTGGTCTGTA 58.296 43.478 0.00 0.00 0.00 2.74
2279 2309 4.336889 TTGGAACTCTTGTGGTCTGTAG 57.663 45.455 0.00 0.00 0.00 2.74
2280 2310 3.572642 TGGAACTCTTGTGGTCTGTAGA 58.427 45.455 0.00 0.00 0.00 2.59
2281 2311 4.160329 TGGAACTCTTGTGGTCTGTAGAT 58.840 43.478 0.00 0.00 0.00 1.98
2282 2312 4.220821 TGGAACTCTTGTGGTCTGTAGATC 59.779 45.833 0.00 0.00 0.00 2.75
2283 2313 4.220821 GGAACTCTTGTGGTCTGTAGATCA 59.779 45.833 0.00 0.00 31.75 2.92
2284 2314 5.105146 GGAACTCTTGTGGTCTGTAGATCAT 60.105 44.000 0.00 0.00 37.52 2.45
2285 2315 6.365970 AACTCTTGTGGTCTGTAGATCATT 57.634 37.500 0.00 0.00 37.52 2.57
2286 2316 5.728471 ACTCTTGTGGTCTGTAGATCATTG 58.272 41.667 0.00 0.00 37.52 2.82
2287 2317 5.247110 ACTCTTGTGGTCTGTAGATCATTGT 59.753 40.000 0.00 0.00 37.52 2.71
2288 2318 6.114187 TCTTGTGGTCTGTAGATCATTGTT 57.886 37.500 0.00 0.00 37.52 2.83
2289 2319 6.166279 TCTTGTGGTCTGTAGATCATTGTTC 58.834 40.000 0.00 0.00 37.52 3.18
2290 2320 5.745312 TGTGGTCTGTAGATCATTGTTCT 57.255 39.130 0.00 2.94 37.52 3.01
2291 2321 6.850752 TGTGGTCTGTAGATCATTGTTCTA 57.149 37.500 0.00 1.14 37.52 2.10
2292 2322 6.631016 TGTGGTCTGTAGATCATTGTTCTAC 58.369 40.000 20.71 20.71 43.79 2.59
2293 2323 6.437477 TGTGGTCTGTAGATCATTGTTCTACT 59.563 38.462 24.80 6.37 43.84 2.57
2294 2324 6.754209 GTGGTCTGTAGATCATTGTTCTACTG 59.246 42.308 24.80 23.85 43.84 2.74
2295 2325 6.663523 TGGTCTGTAGATCATTGTTCTACTGA 59.336 38.462 25.32 25.32 44.98 3.41
2297 2327 6.786207 TCTGTAGATCATTGTTCTACTGACG 58.214 40.000 25.32 16.13 43.64 4.35
2298 2328 5.340803 TGTAGATCATTGTTCTACTGACGC 58.659 41.667 24.80 7.97 43.84 5.19
2299 2329 4.727507 AGATCATTGTTCTACTGACGCT 57.272 40.909 0.00 0.00 0.00 5.07
2300 2330 4.677584 AGATCATTGTTCTACTGACGCTC 58.322 43.478 0.00 0.00 0.00 5.03
2301 2331 3.934457 TCATTGTTCTACTGACGCTCA 57.066 42.857 0.00 0.00 0.00 4.26
2302 2332 3.575630 TCATTGTTCTACTGACGCTCAC 58.424 45.455 0.00 0.00 0.00 3.51
2303 2333 3.255888 TCATTGTTCTACTGACGCTCACT 59.744 43.478 0.00 0.00 0.00 3.41
2304 2334 3.728076 TTGTTCTACTGACGCTCACTT 57.272 42.857 0.00 0.00 0.00 3.16
2305 2335 3.284323 TGTTCTACTGACGCTCACTTC 57.716 47.619 0.00 0.00 0.00 3.01
2306 2336 2.621526 TGTTCTACTGACGCTCACTTCA 59.378 45.455 0.00 0.00 0.00 3.02
2307 2337 2.981140 GTTCTACTGACGCTCACTTCAC 59.019 50.000 0.00 0.00 0.00 3.18
2308 2338 1.540267 TCTACTGACGCTCACTTCACC 59.460 52.381 0.00 0.00 0.00 4.02
2309 2339 1.542030 CTACTGACGCTCACTTCACCT 59.458 52.381 0.00 0.00 0.00 4.00
2310 2340 0.032678 ACTGACGCTCACTTCACCTG 59.967 55.000 0.00 0.00 0.00 4.00
2311 2341 0.315251 CTGACGCTCACTTCACCTGA 59.685 55.000 0.00 0.00 0.00 3.86
2312 2342 0.750249 TGACGCTCACTTCACCTGAA 59.250 50.000 0.00 0.00 0.00 3.02
2313 2343 1.140816 GACGCTCACTTCACCTGAAC 58.859 55.000 0.00 0.00 0.00 3.18
2314 2344 0.597637 ACGCTCACTTCACCTGAACG 60.598 55.000 0.00 0.00 0.00 3.95
2315 2345 1.284982 CGCTCACTTCACCTGAACGG 61.285 60.000 0.00 0.00 39.35 4.44
2316 2346 1.569479 GCTCACTTCACCTGAACGGC 61.569 60.000 0.00 0.00 35.61 5.68
2317 2347 0.034059 CTCACTTCACCTGAACGGCT 59.966 55.000 0.00 0.00 35.61 5.52
2318 2348 0.249868 TCACTTCACCTGAACGGCTG 60.250 55.000 0.00 0.00 35.61 4.85
2319 2349 1.071471 ACTTCACCTGAACGGCTGG 59.929 57.895 0.00 2.64 41.12 4.85
2320 2350 1.371183 CTTCACCTGAACGGCTGGA 59.629 57.895 9.79 0.00 38.83 3.86
2321 2351 0.951040 CTTCACCTGAACGGCTGGAC 60.951 60.000 9.79 0.00 38.83 4.02
2322 2352 2.358737 CACCTGAACGGCTGGACC 60.359 66.667 9.79 0.00 38.83 4.46
2323 2353 2.847234 ACCTGAACGGCTGGACCA 60.847 61.111 9.79 0.00 39.03 4.02
2324 2354 2.046892 CCTGAACGGCTGGACCAG 60.047 66.667 17.83 17.83 39.03 4.00
2325 2355 2.583441 CCTGAACGGCTGGACCAGA 61.583 63.158 26.25 1.62 39.03 3.86
2326 2356 1.599047 CTGAACGGCTGGACCAGAT 59.401 57.895 26.25 6.60 39.03 2.90
2327 2357 0.742281 CTGAACGGCTGGACCAGATG 60.742 60.000 26.25 17.62 39.03 2.90
2328 2358 1.191489 TGAACGGCTGGACCAGATGA 61.191 55.000 26.25 0.00 39.03 2.92
2329 2359 0.179000 GAACGGCTGGACCAGATGAT 59.821 55.000 26.25 10.59 39.03 2.45
2330 2360 1.412710 GAACGGCTGGACCAGATGATA 59.587 52.381 26.25 0.00 39.03 2.15
2331 2361 1.043816 ACGGCTGGACCAGATGATAG 58.956 55.000 26.25 10.56 39.03 2.08
2332 2362 1.043816 CGGCTGGACCAGATGATAGT 58.956 55.000 26.25 0.00 39.03 2.12
2333 2363 1.269988 CGGCTGGACCAGATGATAGTG 60.270 57.143 26.25 0.00 39.03 2.74
2334 2364 1.071385 GGCTGGACCAGATGATAGTGG 59.929 57.143 26.25 0.00 39.98 4.00
2335 2365 2.042464 GCTGGACCAGATGATAGTGGA 58.958 52.381 26.25 0.00 37.27 4.02
2336 2366 2.636893 GCTGGACCAGATGATAGTGGAT 59.363 50.000 26.25 0.00 37.27 3.41
2337 2367 3.834813 GCTGGACCAGATGATAGTGGATA 59.165 47.826 26.25 0.00 37.27 2.59
2338 2368 4.469227 GCTGGACCAGATGATAGTGGATAT 59.531 45.833 26.25 0.00 37.27 1.63
2339 2369 5.658634 GCTGGACCAGATGATAGTGGATATA 59.341 44.000 26.25 0.00 37.27 0.86
2340 2370 6.406400 GCTGGACCAGATGATAGTGGATATAC 60.406 46.154 26.25 0.00 37.27 1.47
2341 2371 5.958380 TGGACCAGATGATAGTGGATATACC 59.042 44.000 0.00 0.00 37.27 2.73
2342 2372 5.364157 GGACCAGATGATAGTGGATATACCC 59.636 48.000 0.53 0.00 37.27 3.69
2343 2373 5.915628 ACCAGATGATAGTGGATATACCCA 58.084 41.667 0.53 0.00 37.27 4.51
2344 2374 5.960811 ACCAGATGATAGTGGATATACCCAG 59.039 44.000 0.00 0.00 36.78 4.45
2345 2375 5.960811 CCAGATGATAGTGGATATACCCAGT 59.039 44.000 0.00 0.00 42.27 4.00
2346 2376 6.127225 CCAGATGATAGTGGATATACCCAGTG 60.127 46.154 3.39 0.00 39.99 3.66
2347 2377 6.438741 CAGATGATAGTGGATATACCCAGTGT 59.561 42.308 3.39 0.00 39.99 3.55
2348 2378 7.615757 CAGATGATAGTGGATATACCCAGTGTA 59.384 40.741 3.39 0.00 39.99 2.90
2349 2379 7.836685 AGATGATAGTGGATATACCCAGTGTAG 59.163 40.741 3.39 0.00 39.99 2.74
2350 2380 6.860034 TGATAGTGGATATACCCAGTGTAGT 58.140 40.000 3.39 0.00 39.99 2.73
2351 2381 7.992295 TGATAGTGGATATACCCAGTGTAGTA 58.008 38.462 3.39 0.00 39.99 1.82
2352 2382 8.621073 TGATAGTGGATATACCCAGTGTAGTAT 58.379 37.037 3.39 7.86 39.99 2.12
2356 2386 9.256228 AGTGGATATACCCAGTGTAGTATATTG 57.744 37.037 17.63 0.00 40.54 1.90
2357 2387 9.032624 GTGGATATACCCAGTGTAGTATATTGT 57.967 37.037 17.63 4.32 40.54 2.71
2358 2388 9.610104 TGGATATACCCAGTGTAGTATATTGTT 57.390 33.333 17.63 4.07 40.54 2.83
2365 2395 9.443365 ACCCAGTGTAGTATATTGTTATAAGGT 57.557 33.333 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 4.207955 AGTCGCTACAGAGATGGTATCAA 58.792 43.478 0.00 0.00 0.00 2.57
413 419 5.879223 AGCTGTTTCATTCCATTACTCTCTG 59.121 40.000 0.00 0.00 0.00 3.35
459 465 4.286032 ACTGTAACCATAGAGCTTTCCACA 59.714 41.667 0.00 0.00 0.00 4.17
661 672 5.888161 TGAATTCTTGAAAATAGAGGGGCTC 59.112 40.000 7.05 0.00 0.00 4.70
944 960 1.173444 GCGGAGAATCTAGCCGGAGA 61.173 60.000 5.05 0.00 44.92 3.71
952 968 2.201022 GCCGGGAGCGGAGAATCTA 61.201 63.158 2.18 0.00 33.73 1.98
1438 1463 4.968259 TGGACTTGTTTGTGTAGTAGCAT 58.032 39.130 0.00 0.00 0.00 3.79
1871 1901 5.066593 GGGGCTTCTATTTCTATCAACTGG 58.933 45.833 0.00 0.00 0.00 4.00
1975 2005 6.919775 TCAGGGGCTTCTATCTACTAAATC 57.080 41.667 0.00 0.00 0.00 2.17
2128 2158 1.767672 CCATGCCCTCCTAGCAGGA 60.768 63.158 0.00 5.03 44.47 3.86
2129 2159 1.766625 CTCCATGCCCTCCTAGCAGG 61.767 65.000 0.00 0.00 44.90 4.85
2130 2160 1.753470 CTCCATGCCCTCCTAGCAG 59.247 63.158 0.00 0.00 44.90 4.24
2131 2161 1.767672 CCTCCATGCCCTCCTAGCA 60.768 63.158 0.00 0.00 45.94 3.49
2132 2162 1.460305 TCCTCCATGCCCTCCTAGC 60.460 63.158 0.00 0.00 0.00 3.42
2133 2163 0.105246 ACTCCTCCATGCCCTCCTAG 60.105 60.000 0.00 0.00 0.00 3.02
2134 2164 0.343372 AACTCCTCCATGCCCTCCTA 59.657 55.000 0.00 0.00 0.00 2.94
2135 2165 0.551131 AAACTCCTCCATGCCCTCCT 60.551 55.000 0.00 0.00 0.00 3.69
2136 2166 0.106967 GAAACTCCTCCATGCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
2137 2167 0.106967 GGAAACTCCTCCATGCCCTC 60.107 60.000 0.00 0.00 35.36 4.30
2138 2168 1.575447 GGGAAACTCCTCCATGCCCT 61.575 60.000 0.00 0.00 37.20 5.19
2139 2169 1.076705 GGGAAACTCCTCCATGCCC 60.077 63.158 0.00 0.00 37.20 5.36
2140 2170 1.076705 GGGGAAACTCCTCCATGCC 60.077 63.158 0.00 0.00 37.20 4.40
2141 2171 0.332972 AAGGGGAAACTCCTCCATGC 59.667 55.000 0.00 0.00 37.93 4.06
2142 2172 1.635487 TCAAGGGGAAACTCCTCCATG 59.365 52.381 0.00 0.00 37.93 3.66
2143 2173 2.041755 GTTCAAGGGGAAACTCCTCCAT 59.958 50.000 0.00 0.00 37.93 3.41
2144 2174 1.423921 GTTCAAGGGGAAACTCCTCCA 59.576 52.381 0.00 0.00 37.93 3.86
2145 2175 1.705745 AGTTCAAGGGGAAACTCCTCC 59.294 52.381 0.00 0.00 37.93 4.30
2146 2176 2.290387 GGAGTTCAAGGGGAAACTCCTC 60.290 54.545 21.37 0.00 43.29 3.71
2147 2177 1.705745 GGAGTTCAAGGGGAAACTCCT 59.294 52.381 21.37 0.00 43.29 3.69
2148 2178 1.423921 TGGAGTTCAAGGGGAAACTCC 59.576 52.381 21.70 21.70 44.90 3.85
2149 2179 2.505405 GTGGAGTTCAAGGGGAAACTC 58.495 52.381 6.69 6.69 37.23 3.01
2150 2180 1.202770 CGTGGAGTTCAAGGGGAAACT 60.203 52.381 0.00 0.00 37.23 2.66
2151 2181 1.202722 TCGTGGAGTTCAAGGGGAAAC 60.203 52.381 0.00 0.00 37.23 2.78
2152 2182 1.133363 TCGTGGAGTTCAAGGGGAAA 58.867 50.000 0.00 0.00 37.23 3.13
2153 2183 0.395312 GTCGTGGAGTTCAAGGGGAA 59.605 55.000 0.00 0.00 0.00 3.97
2154 2184 1.477685 GGTCGTGGAGTTCAAGGGGA 61.478 60.000 0.00 0.00 0.00 4.81
2155 2185 1.003718 GGTCGTGGAGTTCAAGGGG 60.004 63.158 0.00 0.00 0.00 4.79
2156 2186 0.320771 CAGGTCGTGGAGTTCAAGGG 60.321 60.000 0.00 0.00 0.00 3.95
2157 2187 0.679505 TCAGGTCGTGGAGTTCAAGG 59.320 55.000 0.00 0.00 0.00 3.61
2158 2188 2.751166 ATCAGGTCGTGGAGTTCAAG 57.249 50.000 0.00 0.00 0.00 3.02
2159 2189 2.632996 AGAATCAGGTCGTGGAGTTCAA 59.367 45.455 0.00 0.00 0.00 2.69
2160 2190 2.231478 GAGAATCAGGTCGTGGAGTTCA 59.769 50.000 0.00 0.00 33.17 3.18
2161 2191 2.231478 TGAGAATCAGGTCGTGGAGTTC 59.769 50.000 0.00 0.00 42.56 3.01
2162 2192 2.248248 TGAGAATCAGGTCGTGGAGTT 58.752 47.619 0.00 0.00 42.56 3.01
2163 2193 1.924731 TGAGAATCAGGTCGTGGAGT 58.075 50.000 0.00 0.00 42.56 3.85
2175 2205 9.930693 ATAGGATAAATTACGAACCTGAGAATC 57.069 33.333 0.00 0.00 0.00 2.52
2202 2232 1.473080 GGAGCAAGCAACAGCCAAAAA 60.473 47.619 0.00 0.00 0.00 1.94
2203 2233 0.104671 GGAGCAAGCAACAGCCAAAA 59.895 50.000 0.00 0.00 0.00 2.44
2204 2234 0.756442 AGGAGCAAGCAACAGCCAAA 60.756 50.000 0.00 0.00 0.00 3.28
2205 2235 0.756442 AAGGAGCAAGCAACAGCCAA 60.756 50.000 0.00 0.00 0.00 4.52
2206 2236 0.756442 AAAGGAGCAAGCAACAGCCA 60.756 50.000 0.00 0.00 0.00 4.75
2207 2237 0.319297 CAAAGGAGCAAGCAACAGCC 60.319 55.000 0.00 0.00 0.00 4.85
2208 2238 0.386838 ACAAAGGAGCAAGCAACAGC 59.613 50.000 0.00 0.00 0.00 4.40
2209 2239 2.877043 AACAAAGGAGCAAGCAACAG 57.123 45.000 0.00 0.00 0.00 3.16
2210 2240 2.760092 AGAAACAAAGGAGCAAGCAACA 59.240 40.909 0.00 0.00 0.00 3.33
2211 2241 3.443099 AGAAACAAAGGAGCAAGCAAC 57.557 42.857 0.00 0.00 0.00 4.17
2212 2242 4.183101 CAAAGAAACAAAGGAGCAAGCAA 58.817 39.130 0.00 0.00 0.00 3.91
2213 2243 3.195396 ACAAAGAAACAAAGGAGCAAGCA 59.805 39.130 0.00 0.00 0.00 3.91
2214 2244 3.785486 ACAAAGAAACAAAGGAGCAAGC 58.215 40.909 0.00 0.00 0.00 4.01
2215 2245 6.377327 TCTACAAAGAAACAAAGGAGCAAG 57.623 37.500 0.00 0.00 0.00 4.01
2216 2246 6.321181 ACATCTACAAAGAAACAAAGGAGCAA 59.679 34.615 0.00 0.00 34.73 3.91
2217 2247 5.827797 ACATCTACAAAGAAACAAAGGAGCA 59.172 36.000 0.00 0.00 34.73 4.26
2218 2248 6.319141 ACATCTACAAAGAAACAAAGGAGC 57.681 37.500 0.00 0.00 34.73 4.70
2219 2249 8.072567 CAGAACATCTACAAAGAAACAAAGGAG 58.927 37.037 0.00 0.00 34.73 3.69
2220 2250 7.773224 TCAGAACATCTACAAAGAAACAAAGGA 59.227 33.333 0.00 0.00 34.73 3.36
2221 2251 7.930217 TCAGAACATCTACAAAGAAACAAAGG 58.070 34.615 0.00 0.00 34.73 3.11
2222 2252 9.956720 AATCAGAACATCTACAAAGAAACAAAG 57.043 29.630 0.00 0.00 34.73 2.77
2228 2258 9.739276 ACCAATAATCAGAACATCTACAAAGAA 57.261 29.630 0.00 0.00 34.73 2.52
2229 2259 9.166173 CACCAATAATCAGAACATCTACAAAGA 57.834 33.333 0.00 0.00 35.80 2.52
2230 2260 7.912250 GCACCAATAATCAGAACATCTACAAAG 59.088 37.037 0.00 0.00 0.00 2.77
2231 2261 7.611467 AGCACCAATAATCAGAACATCTACAAA 59.389 33.333 0.00 0.00 0.00 2.83
2232 2262 7.112122 AGCACCAATAATCAGAACATCTACAA 58.888 34.615 0.00 0.00 0.00 2.41
2233 2263 6.653020 AGCACCAATAATCAGAACATCTACA 58.347 36.000 0.00 0.00 0.00 2.74
2234 2264 7.559590 AAGCACCAATAATCAGAACATCTAC 57.440 36.000 0.00 0.00 0.00 2.59
2235 2265 7.067372 CCAAAGCACCAATAATCAGAACATCTA 59.933 37.037 0.00 0.00 0.00 1.98
2236 2266 6.127535 CCAAAGCACCAATAATCAGAACATCT 60.128 38.462 0.00 0.00 0.00 2.90
2237 2267 6.038356 CCAAAGCACCAATAATCAGAACATC 58.962 40.000 0.00 0.00 0.00 3.06
2238 2268 5.716228 TCCAAAGCACCAATAATCAGAACAT 59.284 36.000 0.00 0.00 0.00 2.71
2239 2269 5.076182 TCCAAAGCACCAATAATCAGAACA 58.924 37.500 0.00 0.00 0.00 3.18
2240 2270 5.643379 TCCAAAGCACCAATAATCAGAAC 57.357 39.130 0.00 0.00 0.00 3.01
2241 2271 5.774690 AGTTCCAAAGCACCAATAATCAGAA 59.225 36.000 0.00 0.00 0.00 3.02
2242 2272 5.324409 AGTTCCAAAGCACCAATAATCAGA 58.676 37.500 0.00 0.00 0.00 3.27
2243 2273 5.416952 AGAGTTCCAAAGCACCAATAATCAG 59.583 40.000 0.00 0.00 0.00 2.90
2244 2274 5.324409 AGAGTTCCAAAGCACCAATAATCA 58.676 37.500 0.00 0.00 0.00 2.57
2245 2275 5.904362 AGAGTTCCAAAGCACCAATAATC 57.096 39.130 0.00 0.00 0.00 1.75
2246 2276 5.539955 ACAAGAGTTCCAAAGCACCAATAAT 59.460 36.000 0.00 0.00 0.00 1.28
2247 2277 4.892934 ACAAGAGTTCCAAAGCACCAATAA 59.107 37.500 0.00 0.00 0.00 1.40
2248 2278 4.278170 CACAAGAGTTCCAAAGCACCAATA 59.722 41.667 0.00 0.00 0.00 1.90
2249 2279 3.068590 CACAAGAGTTCCAAAGCACCAAT 59.931 43.478 0.00 0.00 0.00 3.16
2250 2280 2.426738 CACAAGAGTTCCAAAGCACCAA 59.573 45.455 0.00 0.00 0.00 3.67
2251 2281 2.023673 CACAAGAGTTCCAAAGCACCA 58.976 47.619 0.00 0.00 0.00 4.17
2252 2282 1.338020 CCACAAGAGTTCCAAAGCACC 59.662 52.381 0.00 0.00 0.00 5.01
2253 2283 2.024414 ACCACAAGAGTTCCAAAGCAC 58.976 47.619 0.00 0.00 0.00 4.40
2254 2284 2.092429 AGACCACAAGAGTTCCAAAGCA 60.092 45.455 0.00 0.00 0.00 3.91
2255 2285 2.291741 CAGACCACAAGAGTTCCAAAGC 59.708 50.000 0.00 0.00 0.00 3.51
2256 2286 3.545703 ACAGACCACAAGAGTTCCAAAG 58.454 45.455 0.00 0.00 0.00 2.77
2257 2287 3.644966 ACAGACCACAAGAGTTCCAAA 57.355 42.857 0.00 0.00 0.00 3.28
2258 2288 3.964688 TCTACAGACCACAAGAGTTCCAA 59.035 43.478 0.00 0.00 0.00 3.53
2259 2289 3.572642 TCTACAGACCACAAGAGTTCCA 58.427 45.455 0.00 0.00 0.00 3.53
2260 2290 4.220821 TGATCTACAGACCACAAGAGTTCC 59.779 45.833 0.00 0.00 0.00 3.62
2261 2291 5.392767 TGATCTACAGACCACAAGAGTTC 57.607 43.478 0.00 0.00 0.00 3.01
2262 2292 6.169094 CAATGATCTACAGACCACAAGAGTT 58.831 40.000 0.00 0.00 0.00 3.01
2263 2293 5.247110 ACAATGATCTACAGACCACAAGAGT 59.753 40.000 0.00 0.00 0.00 3.24
2264 2294 5.728471 ACAATGATCTACAGACCACAAGAG 58.272 41.667 0.00 0.00 0.00 2.85
2265 2295 5.745312 ACAATGATCTACAGACCACAAGA 57.255 39.130 0.00 0.00 0.00 3.02
2266 2296 6.169094 AGAACAATGATCTACAGACCACAAG 58.831 40.000 0.00 0.00 0.00 3.16
2267 2297 6.114187 AGAACAATGATCTACAGACCACAA 57.886 37.500 0.00 0.00 0.00 3.33
2268 2298 5.745312 AGAACAATGATCTACAGACCACA 57.255 39.130 0.00 0.00 0.00 4.17
2276 2306 5.583495 AGCGTCAGTAGAACAATGATCTAC 58.417 41.667 19.07 19.07 46.22 2.59
2277 2307 5.357032 TGAGCGTCAGTAGAACAATGATCTA 59.643 40.000 0.00 0.00 0.00 1.98
2278 2308 4.158579 TGAGCGTCAGTAGAACAATGATCT 59.841 41.667 0.00 0.00 0.00 2.75
2279 2309 4.266502 GTGAGCGTCAGTAGAACAATGATC 59.733 45.833 0.00 0.00 0.00 2.92
2280 2310 4.081972 AGTGAGCGTCAGTAGAACAATGAT 60.082 41.667 0.00 0.00 0.00 2.45
2281 2311 3.255888 AGTGAGCGTCAGTAGAACAATGA 59.744 43.478 0.00 0.00 0.00 2.57
2282 2312 3.579709 AGTGAGCGTCAGTAGAACAATG 58.420 45.455 0.00 0.00 0.00 2.82
2283 2313 3.944055 AGTGAGCGTCAGTAGAACAAT 57.056 42.857 0.00 0.00 0.00 2.71
2284 2314 3.067601 TGAAGTGAGCGTCAGTAGAACAA 59.932 43.478 0.00 0.00 28.24 2.83
2285 2315 2.621526 TGAAGTGAGCGTCAGTAGAACA 59.378 45.455 0.00 0.00 28.24 3.18
2286 2316 2.981140 GTGAAGTGAGCGTCAGTAGAAC 59.019 50.000 0.00 0.00 33.99 3.01
2287 2317 2.030185 GGTGAAGTGAGCGTCAGTAGAA 60.030 50.000 0.00 0.00 33.99 2.10
2288 2318 1.540267 GGTGAAGTGAGCGTCAGTAGA 59.460 52.381 0.00 0.00 33.99 2.59
2289 2319 1.542030 AGGTGAAGTGAGCGTCAGTAG 59.458 52.381 0.00 0.00 33.99 2.57
2290 2320 1.269723 CAGGTGAAGTGAGCGTCAGTA 59.730 52.381 0.00 0.00 33.99 2.74
2291 2321 0.032678 CAGGTGAAGTGAGCGTCAGT 59.967 55.000 0.00 0.00 33.99 3.41
2292 2322 0.315251 TCAGGTGAAGTGAGCGTCAG 59.685 55.000 0.00 0.00 33.99 3.51
2293 2323 0.750249 TTCAGGTGAAGTGAGCGTCA 59.250 50.000 0.00 0.00 0.00 4.35
2294 2324 1.140816 GTTCAGGTGAAGTGAGCGTC 58.859 55.000 0.00 0.00 34.27 5.19
2295 2325 0.597637 CGTTCAGGTGAAGTGAGCGT 60.598 55.000 1.73 0.00 41.90 5.07
2296 2326 1.284982 CCGTTCAGGTGAAGTGAGCG 61.285 60.000 2.78 2.78 45.13 5.03
2297 2327 1.569479 GCCGTTCAGGTGAAGTGAGC 61.569 60.000 0.00 0.00 43.70 4.26
2298 2328 0.034059 AGCCGTTCAGGTGAAGTGAG 59.966 55.000 0.00 0.00 43.70 3.51
2299 2329 0.249868 CAGCCGTTCAGGTGAAGTGA 60.250 55.000 0.00 0.00 43.70 3.41
2300 2330 1.230635 CCAGCCGTTCAGGTGAAGTG 61.231 60.000 0.00 0.00 43.70 3.16
2301 2331 1.071471 CCAGCCGTTCAGGTGAAGT 59.929 57.895 0.00 0.00 43.70 3.01
2302 2332 0.951040 GTCCAGCCGTTCAGGTGAAG 60.951 60.000 0.00 0.00 43.70 3.02
2303 2333 1.070786 GTCCAGCCGTTCAGGTGAA 59.929 57.895 0.00 0.00 43.70 3.18
2304 2334 2.741092 GTCCAGCCGTTCAGGTGA 59.259 61.111 0.00 0.00 43.70 4.02
2305 2335 2.358737 GGTCCAGCCGTTCAGGTG 60.359 66.667 0.00 0.00 43.70 4.00
2306 2336 2.847234 TGGTCCAGCCGTTCAGGT 60.847 61.111 0.00 0.00 43.70 4.00
2307 2337 1.903877 ATCTGGTCCAGCCGTTCAGG 61.904 60.000 14.64 0.00 44.97 3.86
2308 2338 0.742281 CATCTGGTCCAGCCGTTCAG 60.742 60.000 14.64 0.00 41.21 3.02
2309 2339 1.191489 TCATCTGGTCCAGCCGTTCA 61.191 55.000 14.64 0.00 41.21 3.18
2310 2340 0.179000 ATCATCTGGTCCAGCCGTTC 59.821 55.000 14.64 0.00 41.21 3.95
2311 2341 1.414181 CTATCATCTGGTCCAGCCGTT 59.586 52.381 14.64 5.28 41.21 4.44
2312 2342 1.043816 CTATCATCTGGTCCAGCCGT 58.956 55.000 14.64 0.00 41.21 5.68
2313 2343 1.043816 ACTATCATCTGGTCCAGCCG 58.956 55.000 14.64 7.48 41.21 5.52
2314 2344 1.071385 CCACTATCATCTGGTCCAGCC 59.929 57.143 14.64 0.00 37.90 4.85
2315 2345 2.042464 TCCACTATCATCTGGTCCAGC 58.958 52.381 14.64 0.00 0.00 4.85
2316 2346 6.097554 GGTATATCCACTATCATCTGGTCCAG 59.902 46.154 13.21 13.21 35.97 3.86
2317 2347 5.958380 GGTATATCCACTATCATCTGGTCCA 59.042 44.000 0.00 0.00 35.97 4.02
2318 2348 5.364157 GGGTATATCCACTATCATCTGGTCC 59.636 48.000 0.00 0.00 38.11 4.46
2319 2349 5.958380 TGGGTATATCCACTATCATCTGGTC 59.042 44.000 0.00 0.00 38.11 4.02
2320 2350 5.915628 TGGGTATATCCACTATCATCTGGT 58.084 41.667 0.00 0.00 38.11 4.00
2321 2351 5.960811 ACTGGGTATATCCACTATCATCTGG 59.039 44.000 0.00 0.00 38.11 3.86
2322 2352 6.438741 ACACTGGGTATATCCACTATCATCTG 59.561 42.308 0.00 0.00 38.11 2.90
2323 2353 6.565974 ACACTGGGTATATCCACTATCATCT 58.434 40.000 0.00 0.00 38.11 2.90
2324 2354 6.859112 ACACTGGGTATATCCACTATCATC 57.141 41.667 0.00 0.00 38.11 2.92
2325 2355 7.479579 ACTACACTGGGTATATCCACTATCAT 58.520 38.462 0.00 0.00 38.11 2.45
2326 2356 6.860034 ACTACACTGGGTATATCCACTATCA 58.140 40.000 0.00 0.00 38.11 2.15
2330 2360 9.256228 CAATATACTACACTGGGTATATCCACT 57.744 37.037 0.00 0.00 39.33 4.00
2331 2361 9.032624 ACAATATACTACACTGGGTATATCCAC 57.967 37.037 0.00 0.00 39.33 4.02
2332 2362 9.610104 AACAATATACTACACTGGGTATATCCA 57.390 33.333 4.23 4.23 39.33 3.41
2339 2369 9.443365 ACCTTATAACAATATACTACACTGGGT 57.557 33.333 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.