Multiple sequence alignment - TraesCS6A01G248500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G248500 chr6A 100.000 4894 0 0 1 4894 461425017 461429910 0.000000e+00 9038
1 TraesCS6A01G248500 chr6A 90.816 294 27 0 4339 4632 17919603 17919896 1.280000e-105 394
2 TraesCS6A01G248500 chr6A 91.065 291 24 2 4340 4629 16339174 16339463 4.590000e-105 392
3 TraesCS6A01G248500 chr6A 92.481 133 8 2 4122 4252 461429007 461429139 6.470000e-44 189
4 TraesCS6A01G248500 chr6A 92.481 133 8 2 3991 4123 461429138 461429268 6.470000e-44 189
5 TraesCS6A01G248500 chr6B 95.218 2405 70 11 688 3086 499894824 499892459 0.000000e+00 3762
6 TraesCS6A01G248500 chr6B 86.154 715 59 24 1 698 499898748 499898057 0.000000e+00 736
7 TraesCS6A01G248500 chr6B 87.552 482 12 8 3709 4178 499892088 499891643 9.390000e-142 514
8 TraesCS6A01G248500 chr6B 88.462 364 10 5 3248 3601 499892447 499892106 1.270000e-110 411
9 TraesCS6A01G248500 chr6B 91.406 256 19 2 4630 4885 499891413 499891161 1.010000e-91 348
10 TraesCS6A01G248500 chr6B 90.066 151 7 6 4198 4344 499891557 499891411 6.470000e-44 189
11 TraesCS6A01G248500 chr6B 86.364 132 4 9 4122 4252 499891816 499891698 1.110000e-26 132
12 TraesCS6A01G248500 chr6B 100.000 56 0 0 4068 4123 499891557 499891502 2.410000e-18 104
13 TraesCS6A01G248500 chr6D 96.615 1536 36 9 849 2379 323798021 323799545 0.000000e+00 2534
14 TraesCS6A01G248500 chr6D 98.424 952 15 0 2433 3384 323799543 323800494 0.000000e+00 1676
15 TraesCS6A01G248500 chr6D 96.617 473 13 2 3787 4259 323800501 323800970 0.000000e+00 782
16 TraesCS6A01G248500 chr6D 94.681 188 7 2 644 831 323797564 323797748 6.200000e-74 289
17 TraesCS6A01G248500 chr6D 94.558 147 5 2 4645 4791 323801024 323801167 1.770000e-54 224
18 TraesCS6A01G248500 chr6D 98.485 66 1 0 4821 4886 323801161 323801226 3.100000e-22 117
19 TraesCS6A01G248500 chr7B 94.720 966 33 4 2116 3080 606061572 606060624 0.000000e+00 1485
20 TraesCS6A01G248500 chr7B 88.354 1142 40 23 3248 4344 606060605 606059512 0.000000e+00 1286
21 TraesCS6A01G248500 chr7B 96.037 757 27 3 1300 2055 606062324 606061570 0.000000e+00 1229
22 TraesCS6A01G248500 chr7B 90.749 227 17 2 4659 4885 606059503 606059281 2.860000e-77 300
23 TraesCS6A01G248500 chr7B 94.074 135 5 2 3991 4123 606059756 606059623 8.310000e-48 202
24 TraesCS6A01G248500 chr7B 93.939 132 7 1 4122 4252 606059886 606059755 1.070000e-46 198
25 TraesCS6A01G248500 chr5A 92.096 291 23 0 4341 4631 526587797 526587507 1.270000e-110 411
26 TraesCS6A01G248500 chr7D 91.781 292 24 0 4341 4632 441858366 441858657 1.640000e-109 407
27 TraesCS6A01G248500 chr1A 91.781 292 24 0 4339 4630 171452860 171452569 1.640000e-109 407
28 TraesCS6A01G248500 chr7A 91.468 293 25 0 4340 4632 213107655 213107363 2.120000e-108 403
29 TraesCS6A01G248500 chr2D 91.638 287 24 0 4343 4629 327559040 327558754 9.870000e-107 398
30 TraesCS6A01G248500 chr5D 91.638 287 22 2 4343 4628 280638559 280638274 3.550000e-106 396
31 TraesCS6A01G248500 chr2B 91.289 287 23 2 4344 4629 29053274 29053559 1.650000e-104 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G248500 chr6A 461425017 461429910 4893 False 3138.666667 9038 94.987333 1 4894 3 chr6A.!!$F3 4893
1 TraesCS6A01G248500 chr6B 499891161 499898748 7587 True 774.500000 3762 90.652750 1 4885 8 chr6B.!!$R1 4884
2 TraesCS6A01G248500 chr6D 323797564 323801226 3662 False 937.000000 2534 96.563333 644 4886 6 chr6D.!!$F1 4242
3 TraesCS6A01G248500 chr7B 606059281 606062324 3043 True 783.333333 1485 92.978833 1300 4885 6 chr7B.!!$R1 3585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 599 0.035152 GAGTGATGGGTGCATGGTGA 60.035 55.000 0.00 0.0 0.00 4.02 F
669 684 0.248458 GGCGATATTTTGTGCCCACG 60.248 55.000 0.00 0.0 41.70 4.94 F
924 4450 1.543944 CCAAGCCCAATTCCCACACC 61.544 60.000 0.00 0.0 0.00 4.16 F
1023 4549 2.610859 TCCTCCAACCCCAGCTCC 60.611 66.667 0.00 0.0 0.00 4.70 F
1025 4551 2.673523 CTCCAACCCCAGCTCCAG 59.326 66.667 0.00 0.0 0.00 3.86 F
1680 5206 2.793933 TGCTCGAGAACGCTAATGTAC 58.206 47.619 18.75 0.0 39.58 2.90 F
2425 5958 6.041296 AGGCATGGGATTTGAAAATATCAGAC 59.959 38.462 0.00 0.0 39.77 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 5111 0.035439 ATCCCAGCAATTTCGACCGT 60.035 50.000 0.0 0.0 0.00 4.83 R
1595 5121 1.314534 CGTTGCATCCATCCCAGCAA 61.315 55.000 0.0 0.0 43.90 3.91 R
1947 5476 2.359531 CTCAGTTTGCGGGGTAAAACAA 59.640 45.455 0.0 0.0 38.48 2.83 R
2133 5662 2.741517 GCTTTCTCAGGCAAAGACTCTC 59.258 50.000 0.0 0.0 33.34 3.20 R
2433 5966 3.275143 CCAATGATGGTGCCGTAGTTTA 58.725 45.455 0.0 0.0 42.18 2.01 R
3324 6859 3.669023 GCAGTTCGAATCCAGAAGCAAAG 60.669 47.826 0.0 0.0 0.00 2.77 R
4344 7990 0.039618 TCCTCCAAACCCAATGAGCC 59.960 55.000 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.961511 TGTGGCGGCGACTGTGTC 62.962 66.667 16.45 0.00 0.00 3.67
53 54 3.465742 TGATGCTATCTGCTCCTTCAC 57.534 47.619 0.00 0.00 43.37 3.18
58 59 2.863137 GCTATCTGCTCCTTCACGAAAG 59.137 50.000 0.00 0.00 38.95 2.62
59 60 3.677424 GCTATCTGCTCCTTCACGAAAGT 60.677 47.826 0.00 0.00 42.00 2.66
60 61 2.910688 TCTGCTCCTTCACGAAAGTT 57.089 45.000 0.00 0.00 46.40 2.66
61 62 2.483876 TCTGCTCCTTCACGAAAGTTG 58.516 47.619 0.00 0.00 46.40 3.16
64 65 3.013921 TGCTCCTTCACGAAAGTTGTTT 58.986 40.909 0.00 0.00 46.40 2.83
66 67 3.548214 GCTCCTTCACGAAAGTTGTTTCC 60.548 47.826 0.00 0.00 46.40 3.13
76 77 4.921515 CGAAAGTTGTTTCCGTAGATGAGA 59.078 41.667 0.00 0.00 39.22 3.27
86 87 1.606668 CGTAGATGAGAGGGAGCTGAC 59.393 57.143 0.00 0.00 0.00 3.51
104 105 2.872388 CGGCGCCTGGTATGATCCT 61.872 63.158 26.68 0.00 0.00 3.24
105 106 1.302033 GGCGCCTGGTATGATCCTG 60.302 63.158 22.15 0.00 0.00 3.86
118 119 1.479323 TGATCCTGGGTACAAGCGTAC 59.521 52.381 0.00 0.00 46.18 3.67
125 126 3.846955 GTACAAGCGTACCATGGGT 57.153 52.632 18.09 4.67 41.92 4.51
126 127 1.648504 GTACAAGCGTACCATGGGTC 58.351 55.000 18.09 7.53 41.92 4.46
127 128 0.173935 TACAAGCGTACCATGGGTCG 59.826 55.000 18.09 19.90 37.09 4.79
128 129 1.079405 CAAGCGTACCATGGGTCGT 60.079 57.895 24.18 13.17 37.09 4.34
129 130 1.082117 CAAGCGTACCATGGGTCGTC 61.082 60.000 24.18 18.25 37.09 4.20
130 131 1.255667 AAGCGTACCATGGGTCGTCT 61.256 55.000 24.18 19.61 37.09 4.18
131 132 1.217244 GCGTACCATGGGTCGTCTT 59.783 57.895 24.18 3.75 37.09 3.01
132 133 1.082117 GCGTACCATGGGTCGTCTTG 61.082 60.000 24.18 5.87 37.09 3.02
133 134 1.082117 CGTACCATGGGTCGTCTTGC 61.082 60.000 18.09 0.00 37.09 4.01
134 135 0.036765 GTACCATGGGTCGTCTTGCA 60.037 55.000 18.09 0.00 37.09 4.08
135 136 0.036765 TACCATGGGTCGTCTTGCAC 60.037 55.000 18.09 0.00 37.09 4.57
136 137 1.003355 CCATGGGTCGTCTTGCACT 60.003 57.895 2.85 0.00 0.00 4.40
137 138 1.021390 CCATGGGTCGTCTTGCACTC 61.021 60.000 2.85 0.00 0.00 3.51
138 139 0.036952 CATGGGTCGTCTTGCACTCT 60.037 55.000 0.00 0.00 0.00 3.24
139 140 0.036952 ATGGGTCGTCTTGCACTCTG 60.037 55.000 0.00 0.00 0.00 3.35
140 141 1.374758 GGGTCGTCTTGCACTCTGG 60.375 63.158 0.00 0.00 0.00 3.86
145 146 1.224069 CGTCTTGCACTCTGGGTGTG 61.224 60.000 9.78 0.65 46.86 3.82
184 185 5.291178 TCAATGTGAAAGTTGCTCCATTTG 58.709 37.500 0.00 0.00 0.00 2.32
188 189 2.699846 TGAAAGTTGCTCCATTTGGCTT 59.300 40.909 0.00 0.00 34.44 4.35
197 198 4.710865 TGCTCCATTTGGCTTCATTTGATA 59.289 37.500 0.00 0.00 34.44 2.15
305 310 6.183309 AGATGCGAGAAATAACAAAACTCC 57.817 37.500 0.00 0.00 0.00 3.85
314 319 6.715264 AGAAATAACAAAACTCCGATGAAGGT 59.285 34.615 0.00 0.00 0.00 3.50
329 334 5.400782 CGATGAAGGTCGTATCAAATCTCTG 59.599 44.000 0.00 0.00 36.88 3.35
338 343 8.805688 GGTCGTATCAAATCTCTGTACTAAAAC 58.194 37.037 0.00 0.00 0.00 2.43
388 393 2.986311 GCGGATCAAACGGCTATCA 58.014 52.632 0.00 0.00 34.19 2.15
444 449 4.015872 TGCCTAACACAACCCTTAGAAG 57.984 45.455 0.00 0.00 0.00 2.85
448 453 5.710567 GCCTAACACAACCCTTAGAAGAATT 59.289 40.000 0.00 0.00 0.00 2.17
449 454 6.349363 GCCTAACACAACCCTTAGAAGAATTG 60.349 42.308 0.00 0.00 0.00 2.32
459 464 6.594159 ACCCTTAGAAGAATTGTGTAATCACG 59.406 38.462 0.00 0.00 46.49 4.35
460 465 6.594159 CCCTTAGAAGAATTGTGTAATCACGT 59.406 38.462 0.00 0.00 46.49 4.49
461 466 7.762615 CCCTTAGAAGAATTGTGTAATCACGTA 59.237 37.037 0.00 0.00 46.49 3.57
498 503 7.439655 GGAACTATACAGAATGAATGTCCTGTC 59.560 40.741 0.00 0.00 39.69 3.51
517 522 0.666274 CAGTAAACTCTGGCGCGACA 60.666 55.000 17.01 17.01 0.00 4.35
522 527 1.100510 AACTCTGGCGCGACATAGTA 58.899 50.000 30.32 9.64 29.04 1.82
524 529 0.657659 CTCTGGCGCGACATAGTACG 60.658 60.000 18.76 1.53 0.00 3.67
525 530 1.091197 TCTGGCGCGACATAGTACGA 61.091 55.000 18.76 4.79 0.00 3.43
530 536 1.850441 GCGCGACATAGTACGAACAAT 59.150 47.619 12.10 0.00 0.00 2.71
563 578 4.036616 TGTTGGTTGTGTTGTGATGATGAG 59.963 41.667 0.00 0.00 0.00 2.90
566 581 3.814842 GGTTGTGTTGTGATGATGAGTGA 59.185 43.478 0.00 0.00 0.00 3.41
567 582 4.083643 GGTTGTGTTGTGATGATGAGTGAG 60.084 45.833 0.00 0.00 0.00 3.51
569 584 4.060205 TGTGTTGTGATGATGAGTGAGTG 58.940 43.478 0.00 0.00 0.00 3.51
582 597 0.322816 GTGAGTGATGGGTGCATGGT 60.323 55.000 0.00 0.00 0.00 3.55
584 599 0.035152 GAGTGATGGGTGCATGGTGA 60.035 55.000 0.00 0.00 0.00 4.02
589 604 0.332293 ATGGGTGCATGGTGATGTGA 59.668 50.000 0.00 0.00 31.50 3.58
628 643 6.036735 GGTCACATGTTTATTATGTACGCACT 59.963 38.462 0.00 0.00 36.67 4.40
637 652 2.900122 ATGTACGCACTTGCATTCAC 57.100 45.000 1.48 0.00 42.21 3.18
669 684 0.248458 GGCGATATTTTGTGCCCACG 60.248 55.000 0.00 0.00 41.70 4.94
685 700 3.621715 GCCCACGAGTTCTAATTTAGTGG 59.378 47.826 4.87 4.87 45.06 4.00
686 701 4.828829 CCCACGAGTTCTAATTTAGTGGT 58.171 43.478 10.29 0.00 44.27 4.16
687 702 5.243207 CCCACGAGTTCTAATTTAGTGGTT 58.757 41.667 10.29 0.00 44.27 3.67
690 705 7.388500 CCCACGAGTTCTAATTTAGTGGTTTTA 59.612 37.037 10.29 0.00 44.27 1.52
726 3984 6.339730 TGCATCCAAATACAGCCTAAATTTG 58.660 36.000 0.00 4.67 39.31 2.32
743 4001 2.125793 GTACGGTTCCTGCGTCCC 60.126 66.667 0.00 0.00 0.00 4.46
864 4390 4.150454 CCGCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
865 4391 2.520741 CGCCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
924 4450 1.543944 CCAAGCCCAATTCCCACACC 61.544 60.000 0.00 0.00 0.00 4.16
1022 4548 2.674220 CCTCCTCCAACCCCAGCTC 61.674 68.421 0.00 0.00 0.00 4.09
1023 4549 2.610859 TCCTCCAACCCCAGCTCC 60.611 66.667 0.00 0.00 0.00 4.70
1024 4550 2.935481 CCTCCAACCCCAGCTCCA 60.935 66.667 0.00 0.00 0.00 3.86
1025 4551 2.673523 CTCCAACCCCAGCTCCAG 59.326 66.667 0.00 0.00 0.00 3.86
1026 4552 3.635268 CTCCAACCCCAGCTCCAGC 62.635 68.421 0.00 0.00 42.49 4.85
1575 5101 5.940192 TCAACGCTGTTAAAAGATGTGAT 57.060 34.783 0.00 0.00 0.00 3.06
1591 5117 4.850859 TGTGATATGCTAAAAACGGTCG 57.149 40.909 0.00 0.00 0.00 4.79
1595 5121 6.092944 TGTGATATGCTAAAAACGGTCGAAAT 59.907 34.615 0.00 0.00 0.00 2.17
1670 5196 5.350091 AGCTTAAGAATCTTTGCTCGAGAAC 59.650 40.000 18.75 0.00 0.00 3.01
1677 5203 2.923655 TCTTTGCTCGAGAACGCTAATG 59.076 45.455 18.75 3.62 39.58 1.90
1680 5206 2.793933 TGCTCGAGAACGCTAATGTAC 58.206 47.619 18.75 0.00 39.58 2.90
1947 5476 9.293404 GGTTCTACTTTTCCCTATTTTAGTGTT 57.707 33.333 0.00 0.00 0.00 3.32
2137 5666 9.893305 ACGGATTTTTGTTAGTTTATTTGAGAG 57.107 29.630 0.00 0.00 0.00 3.20
2419 5952 7.969690 TTTCTAGGCATGGGATTTGAAAATA 57.030 32.000 0.00 0.00 0.00 1.40
2425 5958 6.041296 AGGCATGGGATTTGAAAATATCAGAC 59.959 38.462 0.00 0.00 39.77 3.51
2433 5966 8.214364 GGATTTGAAAATATCAGACTCCCTAGT 58.786 37.037 0.00 0.00 39.77 2.57
2545 6080 6.881570 ACCATGGGAATTTGAGAATTTCATC 58.118 36.000 18.09 0.00 35.65 2.92
2673 6208 6.830873 ATTGCTTTACTTTGCTCATCTTCT 57.169 33.333 0.00 0.00 0.00 2.85
3292 6827 7.815840 TGATCTTGTTCTTTTGTAATGGTCA 57.184 32.000 0.00 0.00 0.00 4.02
3324 6859 3.768468 TTTGTTGGGAAACAGAACGTC 57.232 42.857 0.00 0.00 33.73 4.34
3401 6936 8.958119 ATTTTGTGACAGTGTTAAGTAGAGAA 57.042 30.769 0.00 0.00 0.00 2.87
3441 6976 7.261325 ACTTAATACTACTGAGTGCACATCTG 58.739 38.462 21.04 17.90 36.28 2.90
3442 6977 5.667539 AATACTACTGAGTGCACATCTGT 57.332 39.130 21.04 21.91 36.28 3.41
3443 6978 4.440839 TACTACTGAGTGCACATCTGTG 57.559 45.455 21.04 16.86 41.78 3.66
3444 6979 4.079253 TACTACTGAGTGCACATCTGTGA 58.921 43.478 21.04 10.17 41.52 3.58
3445 6980 4.706962 TACTACTGAGTGCACATCTGTGAT 59.293 41.667 21.04 15.59 41.52 3.06
3446 6981 5.185828 TACTACTGAGTGCACATCTGTGATT 59.814 40.000 21.04 12.80 41.52 2.57
3447 6982 6.846710 TACTACTGAGTGCACATCTGTGATTG 60.847 42.308 21.04 14.91 41.52 2.67
3448 6983 9.139940 TACTACTGAGTGCACATCTGTGATTGT 62.140 40.741 21.04 18.36 41.52 2.71
3460 6995 8.268850 ACATCTGTGATTGTAAATACCACTTC 57.731 34.615 0.00 0.00 0.00 3.01
3461 6996 8.103305 ACATCTGTGATTGTAAATACCACTTCT 58.897 33.333 0.00 0.00 0.00 2.85
3625 7170 4.525874 TGCACATGGTAAATTGGTGATCAA 59.474 37.500 0.00 0.00 40.01 2.57
3638 7183 8.543293 AATTGGTGATCAACTGATTATGGAAT 57.457 30.769 12.94 0.00 38.31 3.01
3754 7300 2.250188 GCACATCGTATTGTTGTTGGC 58.750 47.619 0.00 0.00 0.00 4.52
3769 7315 3.146218 TGGCAAACCAAAGGATGCT 57.854 47.368 14.60 0.00 45.37 3.79
3770 7316 2.300956 TGGCAAACCAAAGGATGCTA 57.699 45.000 14.60 8.71 45.37 3.49
3771 7317 2.170166 TGGCAAACCAAAGGATGCTAG 58.830 47.619 14.60 0.00 45.37 3.42
3772 7318 2.171003 GGCAAACCAAAGGATGCTAGT 58.829 47.619 14.60 0.00 38.42 2.57
3773 7319 3.245087 TGGCAAACCAAAGGATGCTAGTA 60.245 43.478 14.60 0.00 45.37 1.82
3774 7320 3.378427 GGCAAACCAAAGGATGCTAGTAG 59.622 47.826 14.60 0.00 38.42 2.57
3775 7321 4.010349 GCAAACCAAAGGATGCTAGTAGT 58.990 43.478 0.00 0.00 36.62 2.73
3776 7322 5.183228 GCAAACCAAAGGATGCTAGTAGTA 58.817 41.667 0.00 0.00 36.62 1.82
3777 7323 5.064834 GCAAACCAAAGGATGCTAGTAGTAC 59.935 44.000 0.00 0.00 36.62 2.73
3778 7324 6.407202 CAAACCAAAGGATGCTAGTAGTACT 58.593 40.000 8.14 8.14 0.00 2.73
3779 7325 6.622427 AACCAAAGGATGCTAGTAGTACTT 57.378 37.500 8.40 0.00 0.00 2.24
3780 7326 6.622427 ACCAAAGGATGCTAGTAGTACTTT 57.378 37.500 8.40 0.00 0.00 2.66
3781 7327 7.729124 ACCAAAGGATGCTAGTAGTACTTTA 57.271 36.000 8.40 0.00 0.00 1.85
3782 7328 7.554211 ACCAAAGGATGCTAGTAGTACTTTAC 58.446 38.462 8.40 0.00 0.00 2.01
3783 7329 7.399478 ACCAAAGGATGCTAGTAGTACTTTACT 59.601 37.037 8.40 1.56 42.68 2.24
3784 7330 8.258708 CCAAAGGATGCTAGTAGTACTTTACTT 58.741 37.037 8.40 1.60 40.14 2.24
3785 7331 9.654663 CAAAGGATGCTAGTAGTACTTTACTTT 57.345 33.333 8.40 7.24 40.14 2.66
3907 7454 5.522460 GCATAATGTGATGAGCAAAGCATTT 59.478 36.000 0.00 0.00 40.26 2.32
3944 7492 6.422223 CAAATTCCATGTAGTAGCGACAATC 58.578 40.000 0.00 0.00 0.00 2.67
4159 7718 7.921786 ACGGATTCAGTTTTCTTATTCATGA 57.078 32.000 0.00 0.00 0.00 3.07
4185 7744 4.741321 ATGCCATATTTGGTTCAGTTGG 57.259 40.909 4.00 0.00 45.57 3.77
4259 7885 9.645059 TTCAGAGATGAATTATATCCGAATGTC 57.355 33.333 0.00 0.00 0.00 3.06
4260 7886 8.806146 TCAGAGATGAATTATATCCGAATGTCA 58.194 33.333 0.00 0.00 0.00 3.58
4261 7887 9.597170 CAGAGATGAATTATATCCGAATGTCAT 57.403 33.333 0.00 0.00 0.00 3.06
4295 7940 3.401033 TCATCTTCGTGCTTTTCCTGA 57.599 42.857 0.00 0.00 0.00 3.86
4296 7941 3.942829 TCATCTTCGTGCTTTTCCTGAT 58.057 40.909 0.00 0.00 0.00 2.90
4305 7950 5.179368 TCGTGCTTTTCCTGATAAGTGAAAG 59.821 40.000 0.48 0.00 30.41 2.62
4307 7952 6.374578 GTGCTTTTCCTGATAAGTGAAAGAC 58.625 40.000 6.60 1.06 30.41 3.01
4340 7986 7.759489 TGTATAGCTGGAAAGATTTTGTGTT 57.241 32.000 0.00 0.00 0.00 3.32
4341 7987 8.856153 TGTATAGCTGGAAAGATTTTGTGTTA 57.144 30.769 0.00 0.00 0.00 2.41
4342 7988 9.290988 TGTATAGCTGGAAAGATTTTGTGTTAA 57.709 29.630 0.00 0.00 0.00 2.01
4343 7989 9.774742 GTATAGCTGGAAAGATTTTGTGTTAAG 57.225 33.333 0.00 0.00 0.00 1.85
4344 7990 6.089249 AGCTGGAAAGATTTTGTGTTAAGG 57.911 37.500 0.00 0.00 0.00 2.69
4345 7991 5.011023 AGCTGGAAAGATTTTGTGTTAAGGG 59.989 40.000 0.00 0.00 0.00 3.95
4346 7992 5.208463 TGGAAAGATTTTGTGTTAAGGGC 57.792 39.130 0.00 0.00 0.00 5.19
4347 7993 4.898861 TGGAAAGATTTTGTGTTAAGGGCT 59.101 37.500 0.00 0.00 0.00 5.19
4348 7994 5.010617 TGGAAAGATTTTGTGTTAAGGGCTC 59.989 40.000 0.00 0.00 0.00 4.70
4349 7995 5.010617 GGAAAGATTTTGTGTTAAGGGCTCA 59.989 40.000 0.00 0.00 0.00 4.26
4350 7996 6.295292 GGAAAGATTTTGTGTTAAGGGCTCAT 60.295 38.462 0.00 0.00 0.00 2.90
4351 7997 6.670695 AAGATTTTGTGTTAAGGGCTCATT 57.329 33.333 0.00 0.00 0.00 2.57
4352 7998 6.029346 AGATTTTGTGTTAAGGGCTCATTG 57.971 37.500 0.00 0.00 0.00 2.82
4353 7999 4.599047 TTTTGTGTTAAGGGCTCATTGG 57.401 40.909 0.00 0.00 0.00 3.16
4354 8000 2.214376 TGTGTTAAGGGCTCATTGGG 57.786 50.000 0.00 0.00 0.00 4.12
4355 8001 1.427368 TGTGTTAAGGGCTCATTGGGT 59.573 47.619 0.00 0.00 0.00 4.51
4356 8002 2.158385 TGTGTTAAGGGCTCATTGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
4357 8003 2.897326 GTGTTAAGGGCTCATTGGGTTT 59.103 45.455 0.00 0.00 0.00 3.27
4358 8004 2.896685 TGTTAAGGGCTCATTGGGTTTG 59.103 45.455 0.00 0.00 0.00 2.93
4359 8005 2.230130 TAAGGGCTCATTGGGTTTGG 57.770 50.000 0.00 0.00 0.00 3.28
4360 8006 0.486879 AAGGGCTCATTGGGTTTGGA 59.513 50.000 0.00 0.00 0.00 3.53
4361 8007 0.040204 AGGGCTCATTGGGTTTGGAG 59.960 55.000 0.00 0.00 0.00 3.86
4362 8008 0.972471 GGGCTCATTGGGTTTGGAGG 60.972 60.000 0.00 0.00 0.00 4.30
4363 8009 0.039618 GGCTCATTGGGTTTGGAGGA 59.960 55.000 0.00 0.00 0.00 3.71
4364 8010 1.549950 GGCTCATTGGGTTTGGAGGAA 60.550 52.381 0.00 0.00 0.00 3.36
4365 8011 2.247358 GCTCATTGGGTTTGGAGGAAA 58.753 47.619 0.00 0.00 0.00 3.13
4366 8012 2.833943 GCTCATTGGGTTTGGAGGAAAT 59.166 45.455 0.00 0.00 0.00 2.17
4367 8013 3.118992 GCTCATTGGGTTTGGAGGAAATC 60.119 47.826 0.00 0.00 0.00 2.17
4368 8014 4.088634 CTCATTGGGTTTGGAGGAAATCA 58.911 43.478 0.00 0.00 0.00 2.57
4369 8015 4.487804 TCATTGGGTTTGGAGGAAATCAA 58.512 39.130 0.00 0.00 0.00 2.57
4370 8016 4.904251 TCATTGGGTTTGGAGGAAATCAAA 59.096 37.500 0.00 0.00 0.00 2.69
4371 8017 5.367937 TCATTGGGTTTGGAGGAAATCAAAA 59.632 36.000 0.00 0.00 35.08 2.44
4377 8023 5.458015 GTTTGGAGGAAATCAAAACGTAGG 58.542 41.667 0.00 0.00 41.01 3.18
4378 8024 4.627284 TGGAGGAAATCAAAACGTAGGA 57.373 40.909 0.00 0.00 0.00 2.94
4379 8025 4.975631 TGGAGGAAATCAAAACGTAGGAA 58.024 39.130 0.00 0.00 0.00 3.36
4380 8026 5.566469 TGGAGGAAATCAAAACGTAGGAAT 58.434 37.500 0.00 0.00 0.00 3.01
4381 8027 6.007703 TGGAGGAAATCAAAACGTAGGAATT 58.992 36.000 0.00 0.00 0.00 2.17
4382 8028 7.169591 TGGAGGAAATCAAAACGTAGGAATTA 58.830 34.615 0.00 0.00 0.00 1.40
4383 8029 7.335924 TGGAGGAAATCAAAACGTAGGAATTAG 59.664 37.037 0.00 0.00 0.00 1.73
4384 8030 7.201705 GGAGGAAATCAAAACGTAGGAATTAGG 60.202 40.741 0.00 0.00 0.00 2.69
4385 8031 7.399634 AGGAAATCAAAACGTAGGAATTAGGA 58.600 34.615 0.00 0.00 0.00 2.94
4386 8032 7.553044 AGGAAATCAAAACGTAGGAATTAGGAG 59.447 37.037 0.00 0.00 0.00 3.69
4387 8033 7.336176 GGAAATCAAAACGTAGGAATTAGGAGT 59.664 37.037 0.00 0.00 0.00 3.85
4388 8034 9.374838 GAAATCAAAACGTAGGAATTAGGAGTA 57.625 33.333 0.00 0.00 0.00 2.59
4389 8035 8.943909 AATCAAAACGTAGGAATTAGGAGTAG 57.056 34.615 0.00 0.00 0.00 2.57
4390 8036 7.472334 TCAAAACGTAGGAATTAGGAGTAGT 57.528 36.000 0.00 0.00 0.00 2.73
4391 8037 8.579850 TCAAAACGTAGGAATTAGGAGTAGTA 57.420 34.615 0.00 0.00 0.00 1.82
4392 8038 9.193806 TCAAAACGTAGGAATTAGGAGTAGTAT 57.806 33.333 0.00 0.00 0.00 2.12
4411 8057 9.780186 AGTAGTATAGAAATTTGATAGGTTGGC 57.220 33.333 0.00 0.00 0.00 4.52
4412 8058 9.555727 GTAGTATAGAAATTTGATAGGTTGGCA 57.444 33.333 0.00 0.00 0.00 4.92
4413 8059 8.451908 AGTATAGAAATTTGATAGGTTGGCAC 57.548 34.615 0.00 0.00 0.00 5.01
4414 8060 8.275040 AGTATAGAAATTTGATAGGTTGGCACT 58.725 33.333 0.00 0.00 0.00 4.40
4415 8061 7.961326 ATAGAAATTTGATAGGTTGGCACTT 57.039 32.000 0.00 0.00 0.00 3.16
4416 8062 6.029346 AGAAATTTGATAGGTTGGCACTTG 57.971 37.500 0.00 0.00 0.00 3.16
4417 8063 3.874392 ATTTGATAGGTTGGCACTTGC 57.126 42.857 0.00 0.00 41.14 4.01
4431 8077 4.725790 GCACTTGCCATCCTAAGAATTT 57.274 40.909 0.00 0.00 34.31 1.82
4432 8078 4.427312 GCACTTGCCATCCTAAGAATTTG 58.573 43.478 0.00 0.00 34.31 2.32
4433 8079 4.158394 GCACTTGCCATCCTAAGAATTTGA 59.842 41.667 0.00 0.00 34.31 2.69
4434 8080 5.644644 CACTTGCCATCCTAAGAATTTGAC 58.355 41.667 0.00 0.00 0.00 3.18
4435 8081 5.416952 CACTTGCCATCCTAAGAATTTGACT 59.583 40.000 0.00 0.00 0.00 3.41
4436 8082 6.012745 ACTTGCCATCCTAAGAATTTGACTT 58.987 36.000 0.00 0.00 0.00 3.01
4437 8083 5.902613 TGCCATCCTAAGAATTTGACTTG 57.097 39.130 0.00 0.00 0.00 3.16
4438 8084 4.158394 TGCCATCCTAAGAATTTGACTTGC 59.842 41.667 0.00 0.00 0.00 4.01
4439 8085 4.440663 GCCATCCTAAGAATTTGACTTGCC 60.441 45.833 0.00 0.00 0.00 4.52
4440 8086 4.952335 CCATCCTAAGAATTTGACTTGCCT 59.048 41.667 0.00 0.00 0.00 4.75
4441 8087 5.067023 CCATCCTAAGAATTTGACTTGCCTC 59.933 44.000 0.00 0.00 0.00 4.70
4442 8088 5.241403 TCCTAAGAATTTGACTTGCCTCA 57.759 39.130 0.00 0.00 0.00 3.86
4443 8089 5.819991 TCCTAAGAATTTGACTTGCCTCAT 58.180 37.500 0.00 0.00 0.00 2.90
4444 8090 6.248433 TCCTAAGAATTTGACTTGCCTCATT 58.752 36.000 0.00 0.00 0.00 2.57
4445 8091 6.375455 TCCTAAGAATTTGACTTGCCTCATTC 59.625 38.462 0.00 0.00 0.00 2.67
4446 8092 5.397142 AAGAATTTGACTTGCCTCATTCC 57.603 39.130 0.00 0.00 0.00 3.01
4447 8093 4.670765 AGAATTTGACTTGCCTCATTCCT 58.329 39.130 0.00 0.00 0.00 3.36
4448 8094 5.819991 AGAATTTGACTTGCCTCATTCCTA 58.180 37.500 0.00 0.00 0.00 2.94
4449 8095 5.649831 AGAATTTGACTTGCCTCATTCCTAC 59.350 40.000 0.00 0.00 0.00 3.18
4450 8096 2.672961 TGACTTGCCTCATTCCTACG 57.327 50.000 0.00 0.00 0.00 3.51
4451 8097 1.291132 GACTTGCCTCATTCCTACGC 58.709 55.000 0.00 0.00 0.00 4.42
4452 8098 0.460284 ACTTGCCTCATTCCTACGCG 60.460 55.000 3.53 3.53 0.00 6.01
4453 8099 1.766143 CTTGCCTCATTCCTACGCGC 61.766 60.000 5.73 0.00 0.00 6.86
4454 8100 2.202878 GCCTCATTCCTACGCGCA 60.203 61.111 5.73 0.00 0.00 6.09
4455 8101 1.813753 GCCTCATTCCTACGCGCAA 60.814 57.895 5.73 0.00 0.00 4.85
4456 8102 1.366111 GCCTCATTCCTACGCGCAAA 61.366 55.000 5.73 0.00 0.00 3.68
4457 8103 1.083489 CCTCATTCCTACGCGCAAAA 58.917 50.000 5.73 0.00 0.00 2.44
4458 8104 1.670811 CCTCATTCCTACGCGCAAAAT 59.329 47.619 5.73 0.00 0.00 1.82
4459 8105 2.539547 CCTCATTCCTACGCGCAAAATG 60.540 50.000 5.73 11.62 0.00 2.32
4460 8106 2.351418 CTCATTCCTACGCGCAAAATGA 59.649 45.455 19.16 19.16 35.62 2.57
4461 8107 2.351418 TCATTCCTACGCGCAAAATGAG 59.649 45.455 17.45 0.00 32.86 2.90
4462 8108 0.446222 TTCCTACGCGCAAAATGAGC 59.554 50.000 5.73 0.00 39.86 4.26
4463 8109 0.391130 TCCTACGCGCAAAATGAGCT 60.391 50.000 5.73 0.00 41.12 4.09
4464 8110 0.447801 CCTACGCGCAAAATGAGCTT 59.552 50.000 5.73 0.00 41.12 3.74
4465 8111 1.135689 CCTACGCGCAAAATGAGCTTT 60.136 47.619 5.73 0.00 41.12 3.51
4466 8112 1.906966 CTACGCGCAAAATGAGCTTTG 59.093 47.619 5.73 0.00 41.12 2.77
4467 8113 0.310543 ACGCGCAAAATGAGCTTTGA 59.689 45.000 5.73 0.00 41.12 2.69
4468 8114 0.979811 CGCGCAAAATGAGCTTTGAG 59.020 50.000 8.75 0.00 41.12 3.02
4469 8115 1.664016 CGCGCAAAATGAGCTTTGAGT 60.664 47.619 8.75 0.00 41.12 3.41
4470 8116 1.717645 GCGCAAAATGAGCTTTGAGTG 59.282 47.619 0.30 0.00 40.12 3.51
4471 8117 2.605338 GCGCAAAATGAGCTTTGAGTGA 60.605 45.455 0.30 0.00 40.12 3.41
4472 8118 3.631144 CGCAAAATGAGCTTTGAGTGAA 58.369 40.909 0.00 0.00 38.35 3.18
4473 8119 4.232221 CGCAAAATGAGCTTTGAGTGAAT 58.768 39.130 0.00 0.00 38.35 2.57
4474 8120 4.089493 CGCAAAATGAGCTTTGAGTGAATG 59.911 41.667 0.00 0.00 38.35 2.67
4475 8121 4.986659 GCAAAATGAGCTTTGAGTGAATGT 59.013 37.500 0.00 0.00 38.35 2.71
4476 8122 5.107607 GCAAAATGAGCTTTGAGTGAATGTG 60.108 40.000 0.00 0.00 38.35 3.21
4477 8123 5.779529 AAATGAGCTTTGAGTGAATGTGT 57.220 34.783 0.00 0.00 0.00 3.72
4478 8124 6.882610 AAATGAGCTTTGAGTGAATGTGTA 57.117 33.333 0.00 0.00 0.00 2.90
4479 8125 6.492007 AATGAGCTTTGAGTGAATGTGTAG 57.508 37.500 0.00 0.00 0.00 2.74
4480 8126 4.960938 TGAGCTTTGAGTGAATGTGTAGT 58.039 39.130 0.00 0.00 0.00 2.73
4481 8127 5.368145 TGAGCTTTGAGTGAATGTGTAGTT 58.632 37.500 0.00 0.00 0.00 2.24
4482 8128 5.822519 TGAGCTTTGAGTGAATGTGTAGTTT 59.177 36.000 0.00 0.00 0.00 2.66
4483 8129 6.064846 AGCTTTGAGTGAATGTGTAGTTTG 57.935 37.500 0.00 0.00 0.00 2.93
4484 8130 4.676924 GCTTTGAGTGAATGTGTAGTTTGC 59.323 41.667 0.00 0.00 0.00 3.68
4485 8131 5.506317 GCTTTGAGTGAATGTGTAGTTTGCT 60.506 40.000 0.00 0.00 0.00 3.91
4486 8132 6.449635 TTTGAGTGAATGTGTAGTTTGCTT 57.550 33.333 0.00 0.00 0.00 3.91
4487 8133 5.673337 TGAGTGAATGTGTAGTTTGCTTC 57.327 39.130 0.00 0.00 0.00 3.86
4488 8134 5.122519 TGAGTGAATGTGTAGTTTGCTTCA 58.877 37.500 0.00 0.00 0.00 3.02
4489 8135 5.588246 TGAGTGAATGTGTAGTTTGCTTCAA 59.412 36.000 0.00 0.00 0.00 2.69
4490 8136 6.094742 TGAGTGAATGTGTAGTTTGCTTCAAA 59.905 34.615 0.00 0.00 0.00 2.69
4491 8137 6.862209 AGTGAATGTGTAGTTTGCTTCAAAA 58.138 32.000 0.00 0.00 35.03 2.44
4492 8138 7.319646 AGTGAATGTGTAGTTTGCTTCAAAAA 58.680 30.769 0.00 0.00 35.03 1.94
4493 8139 7.275560 AGTGAATGTGTAGTTTGCTTCAAAAAC 59.724 33.333 0.00 0.00 35.03 2.43
4494 8140 7.062839 GTGAATGTGTAGTTTGCTTCAAAAACA 59.937 33.333 2.28 0.31 39.49 2.83
4495 8141 6.885735 ATGTGTAGTTTGCTTCAAAAACAC 57.114 33.333 20.55 20.55 44.11 3.32
4497 8143 5.861251 TGTGTAGTTTGCTTCAAAAACACAG 59.139 36.000 23.36 0.00 45.93 3.66
4498 8144 5.288472 GTGTAGTTTGCTTCAAAAACACAGG 59.712 40.000 21.49 0.00 43.75 4.00
4499 8145 4.799564 AGTTTGCTTCAAAAACACAGGA 57.200 36.364 2.28 0.00 39.49 3.86
4500 8146 5.146010 AGTTTGCTTCAAAAACACAGGAA 57.854 34.783 2.28 0.00 39.49 3.36
4501 8147 5.546526 AGTTTGCTTCAAAAACACAGGAAA 58.453 33.333 2.28 0.00 39.49 3.13
4502 8148 6.172630 AGTTTGCTTCAAAAACACAGGAAAT 58.827 32.000 2.28 0.00 39.49 2.17
4503 8149 6.092533 AGTTTGCTTCAAAAACACAGGAAATG 59.907 34.615 2.28 0.00 39.49 2.32
4504 8150 5.336150 TGCTTCAAAAACACAGGAAATGA 57.664 34.783 0.00 0.00 0.00 2.57
4505 8151 5.350633 TGCTTCAAAAACACAGGAAATGAG 58.649 37.500 0.00 0.00 0.00 2.90
4506 8152 5.105392 TGCTTCAAAAACACAGGAAATGAGT 60.105 36.000 0.00 0.00 33.76 3.41
4507 8153 6.096141 TGCTTCAAAAACACAGGAAATGAGTA 59.904 34.615 0.00 0.00 31.90 2.59
4508 8154 6.638468 GCTTCAAAAACACAGGAAATGAGTAG 59.362 38.462 0.00 0.00 31.90 2.57
4509 8155 7.639113 TTCAAAAACACAGGAAATGAGTAGT 57.361 32.000 0.00 0.00 31.90 2.73
4510 8156 8.740123 TTCAAAAACACAGGAAATGAGTAGTA 57.260 30.769 0.00 0.00 31.90 1.82
4511 8157 8.918202 TCAAAAACACAGGAAATGAGTAGTAT 57.082 30.769 0.00 0.00 31.90 2.12
4512 8158 9.349713 TCAAAAACACAGGAAATGAGTAGTATT 57.650 29.630 0.00 0.00 31.90 1.89
4513 8159 9.612620 CAAAAACACAGGAAATGAGTAGTATTC 57.387 33.333 0.00 0.00 31.90 1.75
4514 8160 9.574516 AAAAACACAGGAAATGAGTAGTATTCT 57.425 29.630 0.00 0.00 31.90 2.40
4515 8161 9.574516 AAAACACAGGAAATGAGTAGTATTCTT 57.425 29.630 0.00 0.00 31.90 2.52
4518 8164 9.823647 ACACAGGAAATGAGTAGTATTCTTATG 57.176 33.333 0.00 0.00 30.19 1.90
4532 8178 8.366671 AGTATTCTTATGAAATTCCTGTACGC 57.633 34.615 0.00 0.00 35.63 4.42
4533 8179 7.985184 AGTATTCTTATGAAATTCCTGTACGCA 59.015 33.333 0.00 0.00 35.63 5.24
4534 8180 7.807977 ATTCTTATGAAATTCCTGTACGCAT 57.192 32.000 0.00 0.00 35.63 4.73
4535 8181 7.624360 TTCTTATGAAATTCCTGTACGCATT 57.376 32.000 0.00 0.00 0.00 3.56
4536 8182 7.624360 TCTTATGAAATTCCTGTACGCATTT 57.376 32.000 0.00 0.00 0.00 2.32
4537 8183 7.693952 TCTTATGAAATTCCTGTACGCATTTC 58.306 34.615 9.99 9.99 36.54 2.17
4538 8184 4.695217 TGAAATTCCTGTACGCATTTCC 57.305 40.909 12.61 1.95 35.58 3.13
4539 8185 4.331968 TGAAATTCCTGTACGCATTTCCT 58.668 39.130 12.61 0.00 35.58 3.36
4540 8186 5.492895 TGAAATTCCTGTACGCATTTCCTA 58.507 37.500 12.61 0.00 35.58 2.94
4541 8187 5.353123 TGAAATTCCTGTACGCATTTCCTAC 59.647 40.000 12.61 0.00 35.58 3.18
4542 8188 3.965379 TTCCTGTACGCATTTCCTACA 57.035 42.857 0.00 0.00 0.00 2.74
4543 8189 3.965379 TCCTGTACGCATTTCCTACAA 57.035 42.857 0.00 0.00 0.00 2.41
4544 8190 4.274602 TCCTGTACGCATTTCCTACAAA 57.725 40.909 0.00 0.00 0.00 2.83
4545 8191 4.839121 TCCTGTACGCATTTCCTACAAAT 58.161 39.130 0.00 0.00 0.00 2.32
4546 8192 4.873827 TCCTGTACGCATTTCCTACAAATC 59.126 41.667 0.00 0.00 0.00 2.17
4547 8193 4.260212 CCTGTACGCATTTCCTACAAATCG 60.260 45.833 0.00 0.00 0.00 3.34
4548 8194 4.496360 TGTACGCATTTCCTACAAATCGA 58.504 39.130 0.00 0.00 0.00 3.59
4549 8195 4.930405 TGTACGCATTTCCTACAAATCGAA 59.070 37.500 0.00 0.00 0.00 3.71
4550 8196 5.583061 TGTACGCATTTCCTACAAATCGAAT 59.417 36.000 0.00 0.00 0.00 3.34
4551 8197 4.908736 ACGCATTTCCTACAAATCGAATG 58.091 39.130 0.00 0.00 0.00 2.67
4552 8198 3.725740 CGCATTTCCTACAAATCGAATGC 59.274 43.478 8.38 8.38 43.41 3.56
4553 8199 4.671377 GCATTTCCTACAAATCGAATGCA 58.329 39.130 12.42 0.00 45.14 3.96
4554 8200 5.284079 GCATTTCCTACAAATCGAATGCAT 58.716 37.500 12.42 0.00 45.14 3.96
4555 8201 6.437928 GCATTTCCTACAAATCGAATGCATA 58.562 36.000 0.00 0.00 45.14 3.14
4556 8202 7.086376 GCATTTCCTACAAATCGAATGCATAT 58.914 34.615 0.00 0.00 45.14 1.78
4557 8203 8.236586 GCATTTCCTACAAATCGAATGCATATA 58.763 33.333 0.00 0.00 45.14 0.86
4588 8234 6.709018 TTTTTCTCCGGAATCTTTGTTTCT 57.291 33.333 5.23 0.00 0.00 2.52
4589 8235 7.811117 TTTTTCTCCGGAATCTTTGTTTCTA 57.189 32.000 5.23 0.00 0.00 2.10
4590 8236 7.996098 TTTTCTCCGGAATCTTTGTTTCTAT 57.004 32.000 5.23 0.00 0.00 1.98
4591 8237 6.985188 TTCTCCGGAATCTTTGTTTCTATG 57.015 37.500 5.23 0.00 0.00 2.23
4592 8238 6.049955 TCTCCGGAATCTTTGTTTCTATGT 57.950 37.500 5.23 0.00 0.00 2.29
4593 8239 6.472887 TCTCCGGAATCTTTGTTTCTATGTT 58.527 36.000 5.23 0.00 0.00 2.71
4594 8240 6.940298 TCTCCGGAATCTTTGTTTCTATGTTT 59.060 34.615 5.23 0.00 0.00 2.83
4595 8241 7.447238 TCTCCGGAATCTTTGTTTCTATGTTTT 59.553 33.333 5.23 0.00 0.00 2.43
4596 8242 7.947282 TCCGGAATCTTTGTTTCTATGTTTTT 58.053 30.769 0.00 0.00 0.00 1.94
4597 8243 8.079809 TCCGGAATCTTTGTTTCTATGTTTTTC 58.920 33.333 0.00 0.00 0.00 2.29
4598 8244 7.328493 CCGGAATCTTTGTTTCTATGTTTTTCC 59.672 37.037 0.00 0.00 0.00 3.13
4599 8245 8.082242 CGGAATCTTTGTTTCTATGTTTTTCCT 58.918 33.333 0.00 0.00 0.00 3.36
4623 8269 4.904253 AAAAATCCTTCAAACCGAACGA 57.096 36.364 0.00 0.00 0.00 3.85
4624 8270 4.483476 AAAATCCTTCAAACCGAACGAG 57.517 40.909 0.00 0.00 0.00 4.18
4625 8271 2.094762 ATCCTTCAAACCGAACGAGG 57.905 50.000 0.00 0.00 37.30 4.63
4626 8272 0.601841 TCCTTCAAACCGAACGAGGC 60.602 55.000 0.00 0.00 33.69 4.70
4627 8273 1.574702 CCTTCAAACCGAACGAGGCC 61.575 60.000 0.00 0.00 33.69 5.19
4628 8274 0.602905 CTTCAAACCGAACGAGGCCT 60.603 55.000 3.86 3.86 33.69 5.19
4652 8298 1.074072 CCGGACATGGTGGGAACAA 59.926 57.895 0.00 0.00 46.06 2.83
4656 8302 2.544903 CGGACATGGTGGGAACAAAAAC 60.545 50.000 0.00 0.00 46.06 2.43
4689 8335 3.604582 GTCTGAAGAATCAACTCAGGGG 58.395 50.000 7.03 0.00 34.49 4.79
4744 8390 7.561356 ACAATGTTAGCCAATAATTAAGCCTCT 59.439 33.333 0.00 0.00 0.00 3.69
4745 8391 9.066892 CAATGTTAGCCAATAATTAAGCCTCTA 57.933 33.333 0.00 0.00 0.00 2.43
4802 8448 8.585471 AAACTTGATCATGTTCCATAAGACAT 57.415 30.769 22.89 5.16 36.97 3.06
4805 8451 7.830697 ACTTGATCATGTTCCATAAGACATTGA 59.169 33.333 8.37 0.00 34.42 2.57
4814 8460 7.781219 TGTTCCATAAGACATTGATGGATGAAT 59.219 33.333 3.78 0.00 46.55 2.57
4886 8532 2.235016 GGCATACAGTGGGTTGTCAAA 58.765 47.619 0.00 0.00 32.56 2.69
4887 8533 2.825532 GGCATACAGTGGGTTGTCAAAT 59.174 45.455 0.00 0.00 32.56 2.32
4888 8534 3.258123 GGCATACAGTGGGTTGTCAAATT 59.742 43.478 0.00 0.00 32.56 1.82
4889 8535 4.236935 GCATACAGTGGGTTGTCAAATTG 58.763 43.478 0.00 0.00 32.56 2.32
4890 8536 4.261994 GCATACAGTGGGTTGTCAAATTGT 60.262 41.667 0.00 0.00 32.56 2.71
4891 8537 5.460646 CATACAGTGGGTTGTCAAATTGTC 58.539 41.667 0.00 0.00 32.56 3.18
4892 8538 3.360867 ACAGTGGGTTGTCAAATTGTCA 58.639 40.909 0.00 0.00 0.00 3.58
4893 8539 3.960102 ACAGTGGGTTGTCAAATTGTCAT 59.040 39.130 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.526262 AGATAGCATCATAGGGACACAGTC 59.474 45.833 0.00 0.00 0.00 3.51
21 22 4.282957 CAGATAGCATCATAGGGACACAGT 59.717 45.833 0.00 0.00 0.00 3.55
53 54 4.921515 TCTCATCTACGGAAACAACTTTCG 59.078 41.667 0.00 0.00 37.27 3.46
58 59 3.194968 TCCCTCTCATCTACGGAAACAAC 59.805 47.826 0.00 0.00 0.00 3.32
59 60 3.437213 TCCCTCTCATCTACGGAAACAA 58.563 45.455 0.00 0.00 0.00 2.83
60 61 3.024547 CTCCCTCTCATCTACGGAAACA 58.975 50.000 0.00 0.00 0.00 2.83
61 62 2.223852 GCTCCCTCTCATCTACGGAAAC 60.224 54.545 0.00 0.00 0.00 2.78
64 65 0.847373 AGCTCCCTCTCATCTACGGA 59.153 55.000 0.00 0.00 0.00 4.69
66 67 1.606668 GTCAGCTCCCTCTCATCTACG 59.393 57.143 0.00 0.00 0.00 3.51
86 87 2.357517 GGATCATACCAGGCGCCG 60.358 66.667 23.20 16.10 0.00 6.46
118 119 1.003355 AGTGCAAGACGACCCATGG 60.003 57.895 4.14 4.14 0.00 3.66
121 122 1.367471 CAGAGTGCAAGACGACCCA 59.633 57.895 0.00 0.00 0.00 4.51
122 123 1.374758 CCAGAGTGCAAGACGACCC 60.375 63.158 0.00 0.00 0.00 4.46
123 124 1.374758 CCCAGAGTGCAAGACGACC 60.375 63.158 0.00 0.00 0.00 4.79
124 125 0.946221 CACCCAGAGTGCAAGACGAC 60.946 60.000 0.00 0.00 40.28 4.34
125 126 1.367471 CACCCAGAGTGCAAGACGA 59.633 57.895 0.00 0.00 40.28 4.20
126 127 3.957260 CACCCAGAGTGCAAGACG 58.043 61.111 0.00 0.00 40.28 4.18
134 135 2.831770 CACCAGCACACCCAGAGT 59.168 61.111 0.00 0.00 0.00 3.24
135 136 2.670934 GCACCAGCACACCCAGAG 60.671 66.667 0.00 0.00 41.58 3.35
161 162 5.291178 CAAATGGAGCAACTTTCACATTGA 58.709 37.500 0.00 0.00 0.00 2.57
165 166 2.224018 GCCAAATGGAGCAACTTTCACA 60.224 45.455 2.98 0.00 37.39 3.58
169 170 2.699846 TGAAGCCAAATGGAGCAACTTT 59.300 40.909 2.98 0.00 37.39 2.66
251 252 6.151480 ACGTTAACCCTTCAACAAAGAAGAAA 59.849 34.615 5.34 0.00 46.18 2.52
252 253 5.648960 ACGTTAACCCTTCAACAAAGAAGAA 59.351 36.000 5.34 0.00 46.18 2.52
253 254 5.187687 ACGTTAACCCTTCAACAAAGAAGA 58.812 37.500 5.34 0.00 46.18 2.87
254 255 5.494632 ACGTTAACCCTTCAACAAAGAAG 57.505 39.130 0.00 0.00 43.60 2.85
263 268 6.440436 GCATCTTTTTAACGTTAACCCTTCA 58.560 36.000 19.97 2.03 0.00 3.02
296 301 2.224209 ACGACCTTCATCGGAGTTTTGT 60.224 45.455 0.00 0.00 46.56 2.83
314 319 9.569167 CAGTTTTAGTACAGAGATTTGATACGA 57.431 33.333 0.00 0.00 0.00 3.43
329 334 7.201504 GGCTCGAGATTTTACCAGTTTTAGTAC 60.202 40.741 18.75 0.00 0.00 2.73
338 343 3.557595 GTGATGGCTCGAGATTTTACCAG 59.442 47.826 18.75 0.00 0.00 4.00
409 414 0.106708 TAGGCATCAACCGGCTGATC 59.893 55.000 17.47 11.93 39.95 2.92
410 415 0.546122 TTAGGCATCAACCGGCTGAT 59.454 50.000 14.68 14.68 39.95 2.90
413 418 0.676782 GTGTTAGGCATCAACCGGCT 60.677 55.000 0.00 0.00 42.68 5.52
481 486 6.652481 AGTTTACTGACAGGACATTCATTCTG 59.348 38.462 7.51 0.00 0.00 3.02
493 498 1.714794 CGCCAGAGTTTACTGACAGG 58.285 55.000 7.51 0.00 39.94 4.00
498 503 0.666274 TGTCGCGCCAGAGTTTACTG 60.666 55.000 0.00 0.00 37.61 2.74
538 544 4.790765 TCATCACAACACAACCAACAAA 57.209 36.364 0.00 0.00 0.00 2.83
553 559 3.118482 ACCCATCACTCACTCATCATCAC 60.118 47.826 0.00 0.00 0.00 3.06
563 578 0.322816 ACCATGCACCCATCACTCAC 60.323 55.000 0.00 0.00 0.00 3.51
566 581 0.627451 ATCACCATGCACCCATCACT 59.373 50.000 0.00 0.00 0.00 3.41
567 582 0.742505 CATCACCATGCACCCATCAC 59.257 55.000 0.00 0.00 0.00 3.06
569 584 0.742505 CACATCACCATGCACCCATC 59.257 55.000 0.00 0.00 32.57 3.51
589 604 3.025322 TGTGACCCCTTTGTGTGATTT 57.975 42.857 0.00 0.00 0.00 2.17
597 612 7.169158 ACATAATAAACATGTGACCCCTTTG 57.831 36.000 0.00 0.00 35.33 2.77
628 643 5.192927 CCTTAGATTACCAGGTGAATGCAA 58.807 41.667 0.76 0.00 0.00 4.08
637 652 6.710744 ACAAAATATCGCCTTAGATTACCAGG 59.289 38.462 0.00 0.00 32.39 4.45
690 705 9.643693 CTGTATTTGGATGCAAAGTTCTTTTAT 57.356 29.630 17.67 0.66 0.00 1.40
726 3984 2.125793 GGGACGCAGGAACCGTAC 60.126 66.667 0.00 0.00 39.30 3.67
743 4001 1.008424 CCGTCGGATCGTCATCCTG 60.008 63.158 4.91 0.00 46.20 3.86
752 4010 0.109504 GCTATCTCAGCCGTCGGATC 60.110 60.000 17.49 0.00 45.23 3.36
851 4377 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
852 4378 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
853 4379 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
854 4380 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
855 4381 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
856 4382 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
857 4383 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
858 4384 3.063197 GCGAGGAGGAGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
859 4385 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
860 4386 2.904866 CGCGAGGAGGAGGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
861 4387 3.283812 AACGCGAGGAGGAGGAGGA 62.284 63.158 15.93 0.00 0.00 3.71
862 4388 2.756283 AACGCGAGGAGGAGGAGG 60.756 66.667 15.93 0.00 0.00 4.30
863 4389 2.776913 GGAACGCGAGGAGGAGGAG 61.777 68.421 15.93 0.00 0.00 3.69
864 4390 2.754658 GGAACGCGAGGAGGAGGA 60.755 66.667 15.93 0.00 0.00 3.71
865 4391 2.756283 AGGAACGCGAGGAGGAGG 60.756 66.667 15.93 0.00 0.00 4.30
979 4505 3.462678 GGGTCGGGCCTCAGAGTC 61.463 72.222 0.84 0.00 37.43 3.36
980 4506 3.966930 GAGGGTCGGGCCTCAGAGT 62.967 68.421 0.84 0.00 37.43 3.24
1044 4570 3.053849 GAGCTGGTCGAGGTCGTCC 62.054 68.421 8.49 8.49 45.43 4.79
1128 4654 1.067635 GTTTTGACTCGGCGGGTACTA 60.068 52.381 14.74 0.00 0.00 1.82
1477 5003 2.159014 TCGTACACCAATCATACCTGCC 60.159 50.000 0.00 0.00 0.00 4.85
1575 5101 5.090083 GCAATTTCGACCGTTTTTAGCATA 58.910 37.500 0.00 0.00 0.00 3.14
1585 5111 0.035439 ATCCCAGCAATTTCGACCGT 60.035 50.000 0.00 0.00 0.00 4.83
1591 5117 1.758280 TGCATCCATCCCAGCAATTTC 59.242 47.619 0.00 0.00 33.48 2.17
1595 5121 1.314534 CGTTGCATCCATCCCAGCAA 61.315 55.000 0.00 0.00 43.90 3.91
1663 5189 5.346822 GGAAAAAGTACATTAGCGTTCTCGA 59.653 40.000 0.00 0.00 39.71 4.04
1947 5476 2.359531 CTCAGTTTGCGGGGTAAAACAA 59.640 45.455 0.00 0.00 38.48 2.83
2133 5662 2.741517 GCTTTCTCAGGCAAAGACTCTC 59.258 50.000 0.00 0.00 33.34 3.20
2137 5666 5.182001 TCATTTAGCTTTCTCAGGCAAAGAC 59.818 40.000 0.00 0.00 33.34 3.01
2390 5923 6.015918 TCAAATCCCATGCCTAGAAAAGAAA 58.984 36.000 0.00 0.00 0.00 2.52
2398 5931 7.449395 TCTGATATTTTCAAATCCCATGCCTAG 59.551 37.037 0.00 0.00 32.78 3.02
2433 5966 3.275143 CCAATGATGGTGCCGTAGTTTA 58.725 45.455 0.00 0.00 42.18 2.01
2545 6080 8.755018 CAAACACTAAATTAACAGCTTCTTTGG 58.245 33.333 0.00 0.00 0.00 3.28
2673 6208 5.366477 TCAACAATAGAGTCCATATCCTGCA 59.634 40.000 0.00 0.00 0.00 4.41
3324 6859 3.669023 GCAGTTCGAATCCAGAAGCAAAG 60.669 47.826 0.00 0.00 0.00 2.77
3432 6967 5.942826 TGGTATTTACAATCACAGATGTGCA 59.057 36.000 8.11 0.00 45.25 4.57
3450 6985 9.787435 TGAGTAAACACAATAAGAAGTGGTATT 57.213 29.630 0.00 0.00 39.99 1.89
3451 6986 9.787435 TTGAGTAAACACAATAAGAAGTGGTAT 57.213 29.630 0.00 0.00 39.99 2.73
3452 6987 9.616156 TTTGAGTAAACACAATAAGAAGTGGTA 57.384 29.630 0.00 0.00 39.99 3.25
3453 6988 8.514330 TTTGAGTAAACACAATAAGAAGTGGT 57.486 30.769 0.00 0.00 39.99 4.16
3454 6989 9.796120 TTTTTGAGTAAACACAATAAGAAGTGG 57.204 29.630 0.00 0.00 39.99 4.00
3460 6995 9.410556 CCTCCATTTTTGAGTAAACACAATAAG 57.589 33.333 0.00 0.00 0.00 1.73
3461 6996 8.919145 ACCTCCATTTTTGAGTAAACACAATAA 58.081 29.630 0.00 0.00 0.00 1.40
3474 7009 7.911651 TGGCAAATAATAACCTCCATTTTTGA 58.088 30.769 0.00 0.00 0.00 2.69
3610 7155 8.902806 TCCATAATCAGTTGATCACCAATTTAC 58.097 33.333 0.00 0.00 37.08 2.01
3611 7156 9.473007 TTCCATAATCAGTTGATCACCAATTTA 57.527 29.630 0.00 0.00 37.08 1.40
3665 7210 7.593825 ACAGGCTAATTAAATCACAAGACAAC 58.406 34.615 0.00 0.00 0.00 3.32
3685 7230 8.713271 GCATACTCTATAATTAAACAGACAGGC 58.287 37.037 0.00 0.00 0.00 4.85
3754 7300 6.407202 AGTACTACTAGCATCCTTTGGTTTG 58.593 40.000 0.00 0.00 37.26 2.93
3784 7330 8.085296 CAGTGTAAATAAGGGTGTGCATAAAAA 58.915 33.333 0.00 0.00 0.00 1.94
3785 7331 7.448777 TCAGTGTAAATAAGGGTGTGCATAAAA 59.551 33.333 0.00 0.00 0.00 1.52
3786 7332 6.943146 TCAGTGTAAATAAGGGTGTGCATAAA 59.057 34.615 0.00 0.00 0.00 1.40
3907 7454 2.178580 GGAATTTGCACCCAAGATGGA 58.821 47.619 0.00 0.00 40.96 3.41
3944 7492 6.127451 AAAAGAACTTTCAACTGGTTACAGGG 60.127 38.462 0.21 0.00 39.29 4.45
4210 7836 4.581824 AGAATTGCGCATATCCAAACAGAT 59.418 37.500 12.75 0.00 0.00 2.90
4255 7881 6.776116 AGATGAATGCAGACCAAATATGACAT 59.224 34.615 0.00 0.00 0.00 3.06
4259 7885 6.140786 CGAAGATGAATGCAGACCAAATATG 58.859 40.000 0.00 0.00 0.00 1.78
4260 7886 5.824624 ACGAAGATGAATGCAGACCAAATAT 59.175 36.000 0.00 0.00 0.00 1.28
4261 7887 5.065090 CACGAAGATGAATGCAGACCAAATA 59.935 40.000 0.00 0.00 0.00 1.40
4262 7888 4.012374 ACGAAGATGAATGCAGACCAAAT 58.988 39.130 0.00 0.00 0.00 2.32
4263 7889 3.189080 CACGAAGATGAATGCAGACCAAA 59.811 43.478 0.00 0.00 0.00 3.28
4264 7890 2.743664 CACGAAGATGAATGCAGACCAA 59.256 45.455 0.00 0.00 0.00 3.67
4305 7950 7.388776 TCTTTCCAGCTATACATATGCAATGTC 59.611 37.037 14.94 4.79 33.76 3.06
4307 7952 7.677454 TCTTTCCAGCTATACATATGCAATG 57.323 36.000 1.58 0.00 0.00 2.82
4340 7986 1.713647 TCCAAACCCAATGAGCCCTTA 59.286 47.619 0.00 0.00 0.00 2.69
4341 7987 0.486879 TCCAAACCCAATGAGCCCTT 59.513 50.000 0.00 0.00 0.00 3.95
4342 7988 0.040204 CTCCAAACCCAATGAGCCCT 59.960 55.000 0.00 0.00 0.00 5.19
4343 7989 0.972471 CCTCCAAACCCAATGAGCCC 60.972 60.000 0.00 0.00 0.00 5.19
4344 7990 0.039618 TCCTCCAAACCCAATGAGCC 59.960 55.000 0.00 0.00 0.00 4.70
4345 7991 1.923356 TTCCTCCAAACCCAATGAGC 58.077 50.000 0.00 0.00 0.00 4.26
4346 7992 4.088634 TGATTTCCTCCAAACCCAATGAG 58.911 43.478 0.00 0.00 0.00 2.90
4347 7993 4.125124 TGATTTCCTCCAAACCCAATGA 57.875 40.909 0.00 0.00 0.00 2.57
4348 7994 4.888326 TTGATTTCCTCCAAACCCAATG 57.112 40.909 0.00 0.00 0.00 2.82
4349 7995 5.620206 GTTTTGATTTCCTCCAAACCCAAT 58.380 37.500 0.00 0.00 34.81 3.16
4350 7996 4.442192 CGTTTTGATTTCCTCCAAACCCAA 60.442 41.667 0.00 0.00 36.58 4.12
4351 7997 3.068873 CGTTTTGATTTCCTCCAAACCCA 59.931 43.478 0.00 0.00 36.58 4.51
4352 7998 3.069016 ACGTTTTGATTTCCTCCAAACCC 59.931 43.478 0.00 0.00 36.58 4.11
4353 7999 4.316205 ACGTTTTGATTTCCTCCAAACC 57.684 40.909 0.00 0.00 36.58 3.27
4354 8000 5.239963 TCCTACGTTTTGATTTCCTCCAAAC 59.760 40.000 0.00 0.00 36.58 2.93
4355 8001 5.378332 TCCTACGTTTTGATTTCCTCCAAA 58.622 37.500 0.00 0.00 0.00 3.28
4356 8002 4.975631 TCCTACGTTTTGATTTCCTCCAA 58.024 39.130 0.00 0.00 0.00 3.53
4357 8003 4.627284 TCCTACGTTTTGATTTCCTCCA 57.373 40.909 0.00 0.00 0.00 3.86
4358 8004 6.510879 AATTCCTACGTTTTGATTTCCTCC 57.489 37.500 0.00 0.00 0.00 4.30
4359 8005 7.551617 TCCTAATTCCTACGTTTTGATTTCCTC 59.448 37.037 0.00 0.00 0.00 3.71
4360 8006 7.399634 TCCTAATTCCTACGTTTTGATTTCCT 58.600 34.615 0.00 0.00 0.00 3.36
4361 8007 7.336176 ACTCCTAATTCCTACGTTTTGATTTCC 59.664 37.037 0.00 0.00 0.00 3.13
4362 8008 8.265165 ACTCCTAATTCCTACGTTTTGATTTC 57.735 34.615 0.00 0.00 0.00 2.17
4363 8009 9.379791 CTACTCCTAATTCCTACGTTTTGATTT 57.620 33.333 0.00 0.00 0.00 2.17
4364 8010 8.537858 ACTACTCCTAATTCCTACGTTTTGATT 58.462 33.333 0.00 0.00 0.00 2.57
4365 8011 8.075761 ACTACTCCTAATTCCTACGTTTTGAT 57.924 34.615 0.00 0.00 0.00 2.57
4366 8012 7.472334 ACTACTCCTAATTCCTACGTTTTGA 57.528 36.000 0.00 0.00 0.00 2.69
4385 8031 9.780186 GCCAACCTATCAAATTTCTATACTACT 57.220 33.333 0.00 0.00 0.00 2.57
4386 8032 9.555727 TGCCAACCTATCAAATTTCTATACTAC 57.444 33.333 0.00 0.00 0.00 2.73
4387 8033 9.555727 GTGCCAACCTATCAAATTTCTATACTA 57.444 33.333 0.00 0.00 0.00 1.82
4388 8034 8.275040 AGTGCCAACCTATCAAATTTCTATACT 58.725 33.333 0.00 0.00 0.00 2.12
4389 8035 8.451908 AGTGCCAACCTATCAAATTTCTATAC 57.548 34.615 0.00 0.00 0.00 1.47
4390 8036 8.902806 CAAGTGCCAACCTATCAAATTTCTATA 58.097 33.333 0.00 0.00 0.00 1.31
4391 8037 7.631377 GCAAGTGCCAACCTATCAAATTTCTAT 60.631 37.037 0.00 0.00 34.31 1.98
4392 8038 6.350110 GCAAGTGCCAACCTATCAAATTTCTA 60.350 38.462 0.00 0.00 34.31 2.10
4393 8039 5.567423 GCAAGTGCCAACCTATCAAATTTCT 60.567 40.000 0.00 0.00 34.31 2.52
4394 8040 4.627035 GCAAGTGCCAACCTATCAAATTTC 59.373 41.667 0.00 0.00 34.31 2.17
4395 8041 4.568956 GCAAGTGCCAACCTATCAAATTT 58.431 39.130 0.00 0.00 34.31 1.82
4396 8042 4.192429 GCAAGTGCCAACCTATCAAATT 57.808 40.909 0.00 0.00 34.31 1.82
4397 8043 3.874392 GCAAGTGCCAACCTATCAAAT 57.126 42.857 0.00 0.00 34.31 2.32
4410 8056 4.158394 TCAAATTCTTAGGATGGCAAGTGC 59.842 41.667 0.00 0.00 41.14 4.40
4411 8057 5.416952 AGTCAAATTCTTAGGATGGCAAGTG 59.583 40.000 0.00 0.00 0.00 3.16
4412 8058 5.574188 AGTCAAATTCTTAGGATGGCAAGT 58.426 37.500 0.00 0.00 0.00 3.16
4413 8059 6.327934 CAAGTCAAATTCTTAGGATGGCAAG 58.672 40.000 0.00 0.00 0.00 4.01
4414 8060 5.336690 GCAAGTCAAATTCTTAGGATGGCAA 60.337 40.000 0.00 0.00 0.00 4.52
4415 8061 4.158394 GCAAGTCAAATTCTTAGGATGGCA 59.842 41.667 0.00 0.00 0.00 4.92
4416 8062 4.440663 GGCAAGTCAAATTCTTAGGATGGC 60.441 45.833 0.00 0.00 0.00 4.40
4417 8063 4.952335 AGGCAAGTCAAATTCTTAGGATGG 59.048 41.667 0.00 0.00 0.00 3.51
4418 8064 5.649395 TGAGGCAAGTCAAATTCTTAGGATG 59.351 40.000 0.00 0.00 0.00 3.51
4419 8065 5.819991 TGAGGCAAGTCAAATTCTTAGGAT 58.180 37.500 0.00 0.00 0.00 3.24
4420 8066 5.241403 TGAGGCAAGTCAAATTCTTAGGA 57.759 39.130 0.00 0.00 0.00 2.94
4421 8067 6.405176 GGAATGAGGCAAGTCAAATTCTTAGG 60.405 42.308 0.00 0.00 0.00 2.69
4422 8068 6.376581 AGGAATGAGGCAAGTCAAATTCTTAG 59.623 38.462 0.00 0.00 0.00 2.18
4423 8069 6.248433 AGGAATGAGGCAAGTCAAATTCTTA 58.752 36.000 0.00 0.00 0.00 2.10
4424 8070 5.082425 AGGAATGAGGCAAGTCAAATTCTT 58.918 37.500 0.00 0.00 0.00 2.52
4425 8071 4.670765 AGGAATGAGGCAAGTCAAATTCT 58.329 39.130 0.00 0.00 0.00 2.40
4426 8072 5.447818 CGTAGGAATGAGGCAAGTCAAATTC 60.448 44.000 0.00 0.00 0.00 2.17
4427 8073 4.396166 CGTAGGAATGAGGCAAGTCAAATT 59.604 41.667 0.00 0.00 0.00 1.82
4428 8074 3.941483 CGTAGGAATGAGGCAAGTCAAAT 59.059 43.478 0.00 0.00 0.00 2.32
4429 8075 3.334691 CGTAGGAATGAGGCAAGTCAAA 58.665 45.455 0.00 0.00 0.00 2.69
4430 8076 2.935238 GCGTAGGAATGAGGCAAGTCAA 60.935 50.000 0.00 0.00 0.00 3.18
4431 8077 1.405526 GCGTAGGAATGAGGCAAGTCA 60.406 52.381 0.00 0.00 0.00 3.41
4432 8078 1.291132 GCGTAGGAATGAGGCAAGTC 58.709 55.000 0.00 0.00 0.00 3.01
4433 8079 0.460284 CGCGTAGGAATGAGGCAAGT 60.460 55.000 0.00 0.00 0.00 3.16
4434 8080 1.766143 GCGCGTAGGAATGAGGCAAG 61.766 60.000 8.43 0.00 0.00 4.01
4435 8081 1.813753 GCGCGTAGGAATGAGGCAA 60.814 57.895 8.43 0.00 0.00 4.52
4436 8082 2.202878 GCGCGTAGGAATGAGGCA 60.203 61.111 8.43 0.00 0.00 4.75
4437 8083 1.366111 TTTGCGCGTAGGAATGAGGC 61.366 55.000 8.43 0.00 0.00 4.70
4438 8084 1.083489 TTTTGCGCGTAGGAATGAGG 58.917 50.000 8.43 0.00 0.00 3.86
4439 8085 2.351418 TCATTTTGCGCGTAGGAATGAG 59.649 45.455 23.63 8.98 33.26 2.90
4440 8086 2.351418 CTCATTTTGCGCGTAGGAATGA 59.649 45.455 24.83 24.83 35.91 2.57
4441 8087 2.708514 CTCATTTTGCGCGTAGGAATG 58.291 47.619 20.94 20.94 0.00 2.67
4442 8088 1.064060 GCTCATTTTGCGCGTAGGAAT 59.936 47.619 8.43 4.99 0.00 3.01
4443 8089 0.446222 GCTCATTTTGCGCGTAGGAA 59.554 50.000 8.43 2.45 0.00 3.36
4444 8090 0.391130 AGCTCATTTTGCGCGTAGGA 60.391 50.000 8.43 0.00 32.55 2.94
4445 8091 0.447801 AAGCTCATTTTGCGCGTAGG 59.552 50.000 8.43 0.00 32.55 3.18
4446 8092 1.906966 CAAAGCTCATTTTGCGCGTAG 59.093 47.619 8.43 0.00 32.55 3.51
4447 8093 1.533299 TCAAAGCTCATTTTGCGCGTA 59.467 42.857 8.43 0.00 37.83 4.42
4448 8094 0.310543 TCAAAGCTCATTTTGCGCGT 59.689 45.000 8.43 0.00 37.83 6.01
4449 8095 0.979811 CTCAAAGCTCATTTTGCGCG 59.020 50.000 0.00 0.00 37.83 6.86
4450 8096 1.717645 CACTCAAAGCTCATTTTGCGC 59.282 47.619 0.00 0.00 37.83 6.09
4451 8097 3.272439 TCACTCAAAGCTCATTTTGCG 57.728 42.857 0.00 0.00 37.83 4.85
4452 8098 4.986659 ACATTCACTCAAAGCTCATTTTGC 59.013 37.500 0.00 0.00 37.83 3.68
4453 8099 5.981315 ACACATTCACTCAAAGCTCATTTTG 59.019 36.000 0.00 0.00 38.97 2.44
4454 8100 6.152932 ACACATTCACTCAAAGCTCATTTT 57.847 33.333 0.00 0.00 0.00 1.82
4455 8101 5.779529 ACACATTCACTCAAAGCTCATTT 57.220 34.783 0.00 0.00 0.00 2.32
4456 8102 6.000219 ACTACACATTCACTCAAAGCTCATT 59.000 36.000 0.00 0.00 0.00 2.57
4457 8103 5.555017 ACTACACATTCACTCAAAGCTCAT 58.445 37.500 0.00 0.00 0.00 2.90
4458 8104 4.960938 ACTACACATTCACTCAAAGCTCA 58.039 39.130 0.00 0.00 0.00 4.26
4459 8105 5.931441 AACTACACATTCACTCAAAGCTC 57.069 39.130 0.00 0.00 0.00 4.09
4460 8106 5.506317 GCAAACTACACATTCACTCAAAGCT 60.506 40.000 0.00 0.00 0.00 3.74
4461 8107 4.676924 GCAAACTACACATTCACTCAAAGC 59.323 41.667 0.00 0.00 0.00 3.51
4462 8108 6.064846 AGCAAACTACACATTCACTCAAAG 57.935 37.500 0.00 0.00 0.00 2.77
4463 8109 6.094742 TGAAGCAAACTACACATTCACTCAAA 59.905 34.615 0.00 0.00 0.00 2.69
4464 8110 5.588246 TGAAGCAAACTACACATTCACTCAA 59.412 36.000 0.00 0.00 0.00 3.02
4465 8111 5.122519 TGAAGCAAACTACACATTCACTCA 58.877 37.500 0.00 0.00 0.00 3.41
4466 8112 5.673337 TGAAGCAAACTACACATTCACTC 57.327 39.130 0.00 0.00 0.00 3.51
4467 8113 6.449635 TTTGAAGCAAACTACACATTCACT 57.550 33.333 0.00 0.00 0.00 3.41
4468 8114 7.062839 TGTTTTTGAAGCAAACTACACATTCAC 59.937 33.333 0.00 0.00 35.50 3.18
4469 8115 7.062839 GTGTTTTTGAAGCAAACTACACATTCA 59.937 33.333 20.74 0.00 42.33 2.57
4470 8116 7.062839 TGTGTTTTTGAAGCAAACTACACATTC 59.937 33.333 22.63 9.06 44.51 2.67
4471 8117 6.870965 TGTGTTTTTGAAGCAAACTACACATT 59.129 30.769 22.63 0.00 44.51 2.71
4472 8118 6.393990 TGTGTTTTTGAAGCAAACTACACAT 58.606 32.000 22.63 0.00 44.51 3.21
4473 8119 5.773575 TGTGTTTTTGAAGCAAACTACACA 58.226 33.333 22.63 22.63 45.63 3.72
4474 8120 5.288472 CCTGTGTTTTTGAAGCAAACTACAC 59.712 40.000 19.77 19.77 42.67 2.90
4475 8121 5.184096 TCCTGTGTTTTTGAAGCAAACTACA 59.816 36.000 0.00 0.00 35.50 2.74
4476 8122 5.646606 TCCTGTGTTTTTGAAGCAAACTAC 58.353 37.500 0.00 0.00 35.50 2.73
4477 8123 5.906113 TCCTGTGTTTTTGAAGCAAACTA 57.094 34.783 0.00 0.00 35.50 2.24
4478 8124 4.799564 TCCTGTGTTTTTGAAGCAAACT 57.200 36.364 0.00 0.00 35.50 2.66
4479 8125 5.854431 TTTCCTGTGTTTTTGAAGCAAAC 57.146 34.783 0.00 0.00 32.79 2.93
4480 8126 6.169094 TCATTTCCTGTGTTTTTGAAGCAAA 58.831 32.000 0.00 0.00 0.00 3.68
4481 8127 5.728471 TCATTTCCTGTGTTTTTGAAGCAA 58.272 33.333 0.00 0.00 0.00 3.91
4482 8128 5.105392 ACTCATTTCCTGTGTTTTTGAAGCA 60.105 36.000 0.00 0.00 0.00 3.91
4483 8129 5.351458 ACTCATTTCCTGTGTTTTTGAAGC 58.649 37.500 0.00 0.00 0.00 3.86
4484 8130 7.707104 ACTACTCATTTCCTGTGTTTTTGAAG 58.293 34.615 0.00 0.00 33.75 3.02
4485 8131 7.639113 ACTACTCATTTCCTGTGTTTTTGAA 57.361 32.000 0.00 0.00 33.75 2.69
4486 8132 8.918202 ATACTACTCATTTCCTGTGTTTTTGA 57.082 30.769 0.00 0.00 33.75 2.69
4487 8133 9.612620 GAATACTACTCATTTCCTGTGTTTTTG 57.387 33.333 0.00 0.00 33.75 2.44
4488 8134 9.574516 AGAATACTACTCATTTCCTGTGTTTTT 57.425 29.630 0.00 0.00 33.75 1.94
4489 8135 9.574516 AAGAATACTACTCATTTCCTGTGTTTT 57.425 29.630 0.00 0.00 33.75 2.43
4492 8138 9.823647 CATAAGAATACTACTCATTTCCTGTGT 57.176 33.333 0.00 0.00 35.78 3.72
4506 8152 9.472361 GCGTACAGGAATTTCATAAGAATACTA 57.528 33.333 0.00 0.00 32.89 1.82
4507 8153 7.985184 TGCGTACAGGAATTTCATAAGAATACT 59.015 33.333 0.00 0.00 32.89 2.12
4508 8154 8.138365 TGCGTACAGGAATTTCATAAGAATAC 57.862 34.615 0.00 0.00 32.89 1.89
4509 8155 8.902540 ATGCGTACAGGAATTTCATAAGAATA 57.097 30.769 0.00 0.00 32.89 1.75
4510 8156 7.807977 ATGCGTACAGGAATTTCATAAGAAT 57.192 32.000 0.00 0.00 32.89 2.40
4511 8157 7.624360 AATGCGTACAGGAATTTCATAAGAA 57.376 32.000 0.00 0.00 0.00 2.52
4512 8158 7.201696 GGAAATGCGTACAGGAATTTCATAAGA 60.202 37.037 14.32 0.00 31.71 2.10
4513 8159 6.912591 GGAAATGCGTACAGGAATTTCATAAG 59.087 38.462 14.32 0.00 31.71 1.73
4514 8160 6.601613 AGGAAATGCGTACAGGAATTTCATAA 59.398 34.615 14.32 0.00 31.71 1.90
4515 8161 6.119536 AGGAAATGCGTACAGGAATTTCATA 58.880 36.000 14.32 0.00 31.71 2.15
4516 8162 4.949856 AGGAAATGCGTACAGGAATTTCAT 59.050 37.500 14.32 7.06 31.71 2.57
4517 8163 4.331968 AGGAAATGCGTACAGGAATTTCA 58.668 39.130 14.32 0.00 31.71 2.69
4518 8164 4.965119 AGGAAATGCGTACAGGAATTTC 57.035 40.909 6.77 6.77 0.00 2.17
4519 8165 5.250200 TGTAGGAAATGCGTACAGGAATTT 58.750 37.500 0.00 0.00 41.47 1.82
4520 8166 4.839121 TGTAGGAAATGCGTACAGGAATT 58.161 39.130 0.00 0.00 41.47 2.17
4521 8167 4.481368 TGTAGGAAATGCGTACAGGAAT 57.519 40.909 0.00 0.00 41.47 3.01
4522 8168 3.965379 TGTAGGAAATGCGTACAGGAA 57.035 42.857 0.00 0.00 41.47 3.36
4523 8169 3.965379 TTGTAGGAAATGCGTACAGGA 57.035 42.857 0.00 0.00 45.41 3.86
4524 8170 4.260212 CGATTTGTAGGAAATGCGTACAGG 60.260 45.833 0.00 0.00 45.41 4.00
4525 8171 4.565166 TCGATTTGTAGGAAATGCGTACAG 59.435 41.667 0.00 0.00 45.41 2.74
4526 8172 4.496360 TCGATTTGTAGGAAATGCGTACA 58.504 39.130 0.00 0.00 43.79 2.90
4527 8173 5.459110 TTCGATTTGTAGGAAATGCGTAC 57.541 39.130 0.00 0.00 38.13 3.67
4528 8174 5.503357 GCATTCGATTTGTAGGAAATGCGTA 60.503 40.000 0.00 0.00 0.00 4.42
4529 8175 4.730613 GCATTCGATTTGTAGGAAATGCGT 60.731 41.667 0.00 0.00 0.00 5.24
4530 8176 3.725740 GCATTCGATTTGTAGGAAATGCG 59.274 43.478 0.00 0.00 0.00 4.73
4531 8177 4.671377 TGCATTCGATTTGTAGGAAATGC 58.329 39.130 10.14 10.14 0.00 3.56
4565 8211 6.709018 AGAAACAAAGATTCCGGAGAAAAA 57.291 33.333 3.34 0.00 35.09 1.94
4566 8212 7.447238 ACATAGAAACAAAGATTCCGGAGAAAA 59.553 33.333 3.34 0.00 35.09 2.29
4567 8213 6.940298 ACATAGAAACAAAGATTCCGGAGAAA 59.060 34.615 3.34 0.00 35.09 2.52
4568 8214 6.472887 ACATAGAAACAAAGATTCCGGAGAA 58.527 36.000 3.34 0.00 36.15 2.87
4569 8215 6.049955 ACATAGAAACAAAGATTCCGGAGA 57.950 37.500 3.34 0.00 0.00 3.71
4570 8216 6.743575 AACATAGAAACAAAGATTCCGGAG 57.256 37.500 3.34 0.00 0.00 4.63
4571 8217 7.519032 AAAACATAGAAACAAAGATTCCGGA 57.481 32.000 0.00 0.00 0.00 5.14
4572 8218 7.328493 GGAAAAACATAGAAACAAAGATTCCGG 59.672 37.037 0.00 0.00 0.00 5.14
4573 8219 8.082242 AGGAAAAACATAGAAACAAAGATTCCG 58.918 33.333 0.00 0.00 37.20 4.30
4602 8248 4.261447 CCTCGTTCGGTTTGAAGGATTTTT 60.261 41.667 1.12 0.00 46.91 1.94
4603 8249 3.252458 CCTCGTTCGGTTTGAAGGATTTT 59.748 43.478 1.12 0.00 46.91 1.82
4604 8250 2.812011 CCTCGTTCGGTTTGAAGGATTT 59.188 45.455 1.12 0.00 46.91 2.17
4605 8251 2.423577 CCTCGTTCGGTTTGAAGGATT 58.576 47.619 1.12 0.00 46.91 3.01
4606 8252 1.944430 GCCTCGTTCGGTTTGAAGGAT 60.944 52.381 1.12 0.00 46.91 3.24
4607 8253 0.601841 GCCTCGTTCGGTTTGAAGGA 60.602 55.000 0.00 0.85 46.25 3.36
4608 8254 1.574702 GGCCTCGTTCGGTTTGAAGG 61.575 60.000 0.00 0.00 42.47 3.46
4609 8255 0.602905 AGGCCTCGTTCGGTTTGAAG 60.603 55.000 0.00 0.00 37.23 3.02
4610 8256 0.680618 TAGGCCTCGTTCGGTTTGAA 59.319 50.000 9.68 0.00 0.00 2.69
4611 8257 0.680618 TTAGGCCTCGTTCGGTTTGA 59.319 50.000 9.68 0.00 0.00 2.69
4612 8258 1.076332 CTTAGGCCTCGTTCGGTTTG 58.924 55.000 9.68 0.00 0.00 2.93
4613 8259 0.672711 GCTTAGGCCTCGTTCGGTTT 60.673 55.000 9.68 0.00 0.00 3.27
4614 8260 1.079336 GCTTAGGCCTCGTTCGGTT 60.079 57.895 9.68 0.00 0.00 4.44
4615 8261 2.280552 TGCTTAGGCCTCGTTCGGT 61.281 57.895 9.68 0.00 37.74 4.69
4616 8262 1.810030 GTGCTTAGGCCTCGTTCGG 60.810 63.158 9.68 0.00 37.74 4.30
4617 8263 1.810030 GGTGCTTAGGCCTCGTTCG 60.810 63.158 9.68 0.00 37.74 3.95
4618 8264 1.810030 CGGTGCTTAGGCCTCGTTC 60.810 63.158 9.68 0.00 37.74 3.95
4619 8265 2.264794 CGGTGCTTAGGCCTCGTT 59.735 61.111 9.68 0.00 37.74 3.85
4620 8266 3.771160 CCGGTGCTTAGGCCTCGT 61.771 66.667 9.68 0.00 37.74 4.18
4621 8267 3.458163 TCCGGTGCTTAGGCCTCG 61.458 66.667 9.68 5.17 37.74 4.63
4622 8268 1.972660 ATGTCCGGTGCTTAGGCCTC 61.973 60.000 9.68 0.00 37.74 4.70
4623 8269 1.995626 ATGTCCGGTGCTTAGGCCT 60.996 57.895 11.78 11.78 37.74 5.19
4624 8270 1.819632 CATGTCCGGTGCTTAGGCC 60.820 63.158 0.00 0.00 37.74 5.19
4625 8271 1.819632 CCATGTCCGGTGCTTAGGC 60.820 63.158 0.00 0.00 39.26 3.93
4626 8272 1.602237 ACCATGTCCGGTGCTTAGG 59.398 57.895 0.00 0.00 38.07 2.69
4656 8302 6.294342 TTGATTCTTCAGACCTTCAAGCATTG 60.294 38.462 0.00 0.00 39.44 2.82
4689 8335 5.822278 TCAGACTTCGAGCATATGTTAGTC 58.178 41.667 11.14 11.14 0.00 2.59
4744 8390 1.668751 GAGCGTGCCGAATCCATTTTA 59.331 47.619 0.00 0.00 0.00 1.52
4745 8391 0.451783 GAGCGTGCCGAATCCATTTT 59.548 50.000 0.00 0.00 0.00 1.82
4802 8448 9.623000 GGACATGATATATCATTCATCCATCAA 57.377 33.333 27.41 4.92 44.70 2.57
4814 8460 9.054580 AGGAGATTTCATGGACATGATATATCA 57.945 33.333 26.36 17.56 46.12 2.15
4820 8466 4.639334 CGAGGAGATTTCATGGACATGAT 58.361 43.478 15.06 2.21 46.12 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.