Multiple sequence alignment - TraesCS6A01G247700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G247700 chr6A 100.000 4180 0 0 1 4180 459847976 459843797 0.000000e+00 7720.0
1 TraesCS6A01G247700 chr6B 92.859 3725 138 46 34 3690 501106028 501109692 0.000000e+00 5288.0
2 TraesCS6A01G247700 chr6B 85.477 482 60 7 3705 4180 120834313 120833836 1.040000e-135 494.0
3 TraesCS6A01G247700 chr6D 92.089 1441 92 17 2230 3662 322456837 322455411 0.000000e+00 2010.0
4 TraesCS6A01G247700 chr6D 96.472 652 20 3 799 1449 322458220 322457571 0.000000e+00 1074.0
5 TraesCS6A01G247700 chr6D 97.381 611 14 2 1446 2054 322457513 322456903 0.000000e+00 1038.0
6 TraesCS6A01G247700 chr6D 90.194 775 47 11 1 769 322459442 322458691 0.000000e+00 983.0
7 TraesCS6A01G247700 chr4D 87.400 500 51 9 3688 4180 405474378 405474872 7.850000e-157 564.0
8 TraesCS6A01G247700 chr3D 87.045 494 59 4 3690 4180 611548126 611548617 1.700000e-153 553.0
9 TraesCS6A01G247700 chr2D 86.774 499 60 3 3685 4180 8003666 8003171 6.110000e-153 551.0
10 TraesCS6A01G247700 chr2D 85.400 500 67 4 3685 4180 624100835 624100338 8.010000e-142 514.0
11 TraesCS6A01G247700 chr2D 96.525 259 9 0 2354 2612 79386508 79386250 2.990000e-116 429.0
12 TraesCS6A01G247700 chr2D 90.909 275 13 2 2063 2335 79386867 79386603 3.970000e-95 359.0
13 TraesCS6A01G247700 chr7D 86.364 506 58 7 3680 4180 154401885 154401386 3.680000e-150 542.0
14 TraesCS6A01G247700 chr7A 86.640 494 59 5 3690 4180 8526758 8527247 1.320000e-149 540.0
15 TraesCS6A01G247700 chr7B 86.983 484 56 5 3692 4170 581382151 581381670 4.760000e-149 538.0
16 TraesCS6A01G247700 chr7B 93.023 43 1 2 2183 2223 213457691 213457649 1.250000e-05 62.1
17 TraesCS6A01G247700 chr5B 85.425 494 65 5 3690 4180 600640079 600639590 1.340000e-139 507.0
18 TraesCS6A01G247700 chr4A 100.000 37 0 0 2185 2221 739735420 739735384 7.500000e-08 69.4
19 TraesCS6A01G247700 chr4A 100.000 37 0 0 2185 2221 742131915 742131879 7.500000e-08 69.4
20 TraesCS6A01G247700 chr3A 95.122 41 2 0 2183 2223 71515857 71515897 9.700000e-07 65.8
21 TraesCS6A01G247700 chr1B 97.436 39 0 1 2184 2222 57002557 57002520 9.700000e-07 65.8
22 TraesCS6A01G247700 chr1A 97.436 39 0 1 2184 2222 36568617 36568580 9.700000e-07 65.8
23 TraesCS6A01G247700 chr2A 94.872 39 1 1 2185 2223 607487770 607487807 4.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G247700 chr6A 459843797 459847976 4179 True 7720.00 7720 100.000 1 4180 1 chr6A.!!$R1 4179
1 TraesCS6A01G247700 chr6B 501106028 501109692 3664 False 5288.00 5288 92.859 34 3690 1 chr6B.!!$F1 3656
2 TraesCS6A01G247700 chr6D 322455411 322459442 4031 True 1276.25 2010 94.034 1 3662 4 chr6D.!!$R1 3661
3 TraesCS6A01G247700 chr2D 79386250 79386867 617 True 394.00 429 93.717 2063 2612 2 chr2D.!!$R3 549


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 1389 0.170561 CGACGTTCTTGGATCGTCCT 59.829 55.0 18.84 0.0 45.87 3.85 F
1580 2121 0.179073 CGTCATAGTGCAGGAAGGGG 60.179 60.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2829 3458 1.267121 GGCAGGAGTTACCAGACTGA 58.733 55.0 3.32 0.0 42.04 3.41 R
3477 4107 0.895100 GCAGCAGGTGGTGGAATCAA 60.895 55.0 10.97 0.0 43.24 2.57 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 8.127327 GGTAGAATTCATGTGTTTGATCAGATG 58.873 37.037 8.44 0.00 39.44 2.90
141 142 2.022129 CTCACGGACTCGCAACCAC 61.022 63.158 0.00 0.00 40.63 4.16
257 260 7.489113 AGTCGATCATTTTTCATGGCAAATTAC 59.511 33.333 0.00 0.00 0.00 1.89
263 266 9.716531 TCATTTTTCATGGCAAATTACATTACA 57.283 25.926 0.00 0.00 0.00 2.41
268 271 7.094508 TCATGGCAAATTACATTACATTCGT 57.905 32.000 0.00 0.00 0.00 3.85
269 272 7.192913 TCATGGCAAATTACATTACATTCGTC 58.807 34.615 0.00 0.00 0.00 4.20
270 273 5.885881 TGGCAAATTACATTACATTCGTCC 58.114 37.500 0.00 0.00 0.00 4.79
271 274 5.416013 TGGCAAATTACATTACATTCGTCCA 59.584 36.000 0.00 0.00 0.00 4.02
272 275 5.971202 GGCAAATTACATTACATTCGTCCAG 59.029 40.000 0.00 0.00 0.00 3.86
273 276 5.971202 GCAAATTACATTACATTCGTCCAGG 59.029 40.000 0.00 0.00 0.00 4.45
274 277 6.494842 CAAATTACATTACATTCGTCCAGGG 58.505 40.000 0.00 0.00 0.00 4.45
278 281 3.199946 ACATTACATTCGTCCAGGGTGAT 59.800 43.478 0.00 0.00 0.00 3.06
290 293 5.878116 CGTCCAGGGTGATAAATTTAGTTGA 59.122 40.000 3.94 0.00 0.00 3.18
291 294 6.183360 CGTCCAGGGTGATAAATTTAGTTGAC 60.183 42.308 3.94 0.00 0.00 3.18
308 312 1.206132 TGACGAGTATGGCAAATCCGT 59.794 47.619 7.80 7.80 37.80 4.69
324 344 6.512741 GCAAATCCGTCTCAGTTTAACAGAAA 60.513 38.462 0.00 0.00 0.00 2.52
329 349 7.211573 TCCGTCTCAGTTTAACAGAAATTGTA 58.788 34.615 0.00 0.00 39.73 2.41
414 440 7.666623 AGTTGTTAATGTTATGAAAAGGTGGG 58.333 34.615 0.00 0.00 0.00 4.61
450 476 1.003696 GAGTTGGAGAGGACAAAGGGG 59.996 57.143 0.00 0.00 0.00 4.79
460 486 4.355287 AGAGGACAAAGGGGAAGAAAAGAT 59.645 41.667 0.00 0.00 0.00 2.40
631 657 2.891580 GGAACCAAGAAAGAAGAACCCC 59.108 50.000 0.00 0.00 0.00 4.95
632 658 2.271944 ACCAAGAAAGAAGAACCCCG 57.728 50.000 0.00 0.00 0.00 5.73
633 659 1.202891 ACCAAGAAAGAAGAACCCCGG 60.203 52.381 0.00 0.00 0.00 5.73
634 660 1.073284 CCAAGAAAGAAGAACCCCGGA 59.927 52.381 0.73 0.00 0.00 5.14
635 661 2.290960 CCAAGAAAGAAGAACCCCGGAT 60.291 50.000 0.73 0.00 0.00 4.18
636 662 3.421844 CAAGAAAGAAGAACCCCGGATT 58.578 45.455 0.73 0.00 0.00 3.01
666 701 1.103398 CAACCGCTCCCAATCCATCC 61.103 60.000 0.00 0.00 0.00 3.51
667 702 1.570857 AACCGCTCCCAATCCATCCA 61.571 55.000 0.00 0.00 0.00 3.41
668 703 1.355718 ACCGCTCCCAATCCATCCAT 61.356 55.000 0.00 0.00 0.00 3.41
669 704 0.607489 CCGCTCCCAATCCATCCATC 60.607 60.000 0.00 0.00 0.00 3.51
741 777 3.390311 TCCATCCATCAATCCTCTGTCTG 59.610 47.826 0.00 0.00 0.00 3.51
762 798 2.193248 CAGCCCGAATTCCTCCCC 59.807 66.667 0.00 0.00 0.00 4.81
766 802 1.384643 CCCGAATTCCTCCCCTCCT 60.385 63.158 0.00 0.00 0.00 3.69
772 830 1.167943 ATTCCTCCCCTCCTCCGATA 58.832 55.000 0.00 0.00 0.00 2.92
794 852 2.041922 CCCTCTCCCCCATCGACA 60.042 66.667 0.00 0.00 0.00 4.35
911 1389 0.170561 CGACGTTCTTGGATCGTCCT 59.829 55.000 18.84 0.00 45.87 3.85
912 1390 1.794437 CGACGTTCTTGGATCGTCCTC 60.794 57.143 18.84 3.34 45.87 3.71
937 1415 2.668212 TGCCGGCGAGTGAAAAGG 60.668 61.111 23.90 0.00 0.00 3.11
997 1475 2.895865 TCGTTTCGTTTGCCGGCA 60.896 55.556 29.03 29.03 37.11 5.69
1287 1765 2.840038 TGCAGTGTGATATTCTGGAGGT 59.160 45.455 0.00 0.00 0.00 3.85
1339 1817 3.446873 TCAATGTGCAGGTGAAAACAACT 59.553 39.130 0.00 0.00 0.00 3.16
1345 1823 2.035449 GCAGGTGAAAACAACTAACCCC 59.965 50.000 0.00 0.00 0.00 4.95
1466 2005 3.159213 ACTTGATTGGTTGATGAGCCA 57.841 42.857 0.00 0.00 0.00 4.75
1580 2121 0.179073 CGTCATAGTGCAGGAAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
1633 2174 4.704833 TCTTGCAGCACCCGAGGC 62.705 66.667 0.00 0.00 0.00 4.70
1665 2206 4.518590 TGGATGTTGATTGATTGTGTCGTT 59.481 37.500 0.00 0.00 0.00 3.85
1671 2212 4.596097 TGATTGATTGTGTCGTTTGTGTG 58.404 39.130 0.00 0.00 0.00 3.82
1673 2214 3.942539 TGATTGTGTCGTTTGTGTGAG 57.057 42.857 0.00 0.00 0.00 3.51
1691 2232 5.639506 GTGTGAGCTGTAATGTGAGTGTTAT 59.360 40.000 0.00 0.00 0.00 1.89
2041 2582 3.498927 ACAGCATTGCTATGTTCTTGC 57.501 42.857 11.55 0.00 36.40 4.01
2224 2767 5.417894 TCCGATCCATATTACTTGTCGCTAT 59.582 40.000 0.00 0.00 0.00 2.97
2305 2854 4.523083 TCTTGCCATGTAACCTACCAATC 58.477 43.478 0.00 0.00 0.00 2.67
2499 3124 5.123820 TCCCGAGCAAATTTATGTTTCTGAG 59.876 40.000 0.00 0.00 0.00 3.35
2779 3408 5.359576 TGGGTAAATCTTGATGTGTATTGCC 59.640 40.000 0.00 0.00 0.00 4.52
2820 3449 8.642020 GCAGACATAACTAATTTTGCAAGAAAG 58.358 33.333 0.00 0.20 0.00 2.62
2829 3458 8.860088 ACTAATTTTGCAAGAAAGTAACCTGAT 58.140 29.630 0.00 0.00 0.00 2.90
2869 3498 7.328404 TGCCAAACCTGATATAATATCTCCA 57.672 36.000 0.00 0.00 0.00 3.86
2929 3558 6.890605 GTTGACAGGAGTTCTGCCAAAAGAA 61.891 44.000 1.15 0.00 45.13 2.52
2990 3619 7.971183 AAAAGTTAACTTGTTTGCTTTTCCA 57.029 28.000 21.22 0.00 36.12 3.53
3190 3819 4.007659 CGGAAGGTTTAGCCACAAATAGT 58.992 43.478 0.00 0.00 40.61 2.12
3222 3851 1.204467 CATATGGTTTTGCGGCTTGGT 59.796 47.619 0.00 0.00 0.00 3.67
3271 3900 8.010733 TGTTTTGGATGATTTTTCTCTTCTGT 57.989 30.769 0.00 0.00 0.00 3.41
3272 3901 8.477256 TGTTTTGGATGATTTTTCTCTTCTGTT 58.523 29.630 0.00 0.00 0.00 3.16
3507 4137 1.068055 CACCTGCTGCAATCTGTTTCC 60.068 52.381 3.02 0.00 0.00 3.13
3525 4155 4.986054 TTCCTTAACCTCCTGCTTGTAA 57.014 40.909 0.00 0.00 0.00 2.41
3527 4157 3.263425 TCCTTAACCTCCTGCTTGTAAGG 59.737 47.826 0.00 0.00 35.42 2.69
3541 4171 5.205565 GCTTGTAAGGAAAGAAAACTGACG 58.794 41.667 0.00 0.00 0.00 4.35
3554 4184 8.873215 AAGAAAACTGACGGTGATATAGTATG 57.127 34.615 0.00 0.00 0.00 2.39
3556 4186 4.785511 ACTGACGGTGATATAGTATGCC 57.214 45.455 0.00 0.00 0.00 4.40
3674 4308 1.202746 CCTAGAATCTCTGCTTGGGGC 60.203 57.143 0.00 0.00 42.22 5.80
3690 4327 2.890311 TGGGGCGCCATTCAATATTTAG 59.110 45.455 30.85 0.00 0.00 1.85
3691 4328 3.153919 GGGGCGCCATTCAATATTTAGA 58.846 45.455 30.85 0.00 0.00 2.10
3692 4329 3.191371 GGGGCGCCATTCAATATTTAGAG 59.809 47.826 30.85 0.00 0.00 2.43
3693 4330 3.366374 GGGCGCCATTCAATATTTAGAGC 60.366 47.826 30.85 0.00 0.00 4.09
3694 4331 3.253188 GGCGCCATTCAATATTTAGAGCA 59.747 43.478 24.80 0.00 0.00 4.26
3695 4332 4.082571 GGCGCCATTCAATATTTAGAGCAT 60.083 41.667 24.80 0.00 0.00 3.79
3696 4333 5.091431 GCGCCATTCAATATTTAGAGCATC 58.909 41.667 0.00 0.00 0.00 3.91
3707 4344 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
3708 4345 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
3709 4346 2.747460 GCATCTCCAACAGCCGCA 60.747 61.111 0.00 0.00 0.00 5.69
3710 4347 3.044059 GCATCTCCAACAGCCGCAC 62.044 63.158 0.00 0.00 0.00 5.34
3711 4348 1.376424 CATCTCCAACAGCCGCACT 60.376 57.895 0.00 0.00 0.00 4.40
3712 4349 0.108186 CATCTCCAACAGCCGCACTA 60.108 55.000 0.00 0.00 0.00 2.74
3713 4350 0.833287 ATCTCCAACAGCCGCACTAT 59.167 50.000 0.00 0.00 0.00 2.12
3714 4351 1.480789 TCTCCAACAGCCGCACTATA 58.519 50.000 0.00 0.00 0.00 1.31
3715 4352 2.039418 TCTCCAACAGCCGCACTATAT 58.961 47.619 0.00 0.00 0.00 0.86
3716 4353 3.227614 TCTCCAACAGCCGCACTATATA 58.772 45.455 0.00 0.00 0.00 0.86
3717 4354 3.639561 TCTCCAACAGCCGCACTATATAA 59.360 43.478 0.00 0.00 0.00 0.98
3718 4355 3.990092 TCCAACAGCCGCACTATATAAG 58.010 45.455 0.00 0.00 0.00 1.73
3719 4356 2.480419 CCAACAGCCGCACTATATAAGC 59.520 50.000 0.00 0.00 0.00 3.09
3724 4361 1.702299 CGCACTATATAAGCGCCGC 59.298 57.895 2.29 0.00 45.14 6.53
3725 4362 1.702299 GCACTATATAAGCGCCGCG 59.298 57.895 8.83 8.83 0.00 6.46
3739 4376 2.503809 CGCGCCGGAAATTTGTGG 60.504 61.111 5.05 0.00 0.00 4.17
3740 4377 2.648454 GCGCCGGAAATTTGTGGT 59.352 55.556 5.05 0.00 0.00 4.16
3741 4378 1.006688 GCGCCGGAAATTTGTGGTT 60.007 52.632 5.05 0.00 0.00 3.67
3742 4379 0.598942 GCGCCGGAAATTTGTGGTTT 60.599 50.000 5.05 0.00 0.00 3.27
3743 4380 1.859383 CGCCGGAAATTTGTGGTTTT 58.141 45.000 5.05 0.00 0.00 2.43
3744 4381 2.205911 CGCCGGAAATTTGTGGTTTTT 58.794 42.857 5.05 0.00 0.00 1.94
3745 4382 3.381949 CGCCGGAAATTTGTGGTTTTTA 58.618 40.909 5.05 0.00 0.00 1.52
3746 4383 3.427193 CGCCGGAAATTTGTGGTTTTTAG 59.573 43.478 5.05 0.00 0.00 1.85
3747 4384 3.185594 GCCGGAAATTTGTGGTTTTTAGC 59.814 43.478 5.05 0.00 0.00 3.09
3748 4385 4.372656 CCGGAAATTTGTGGTTTTTAGCA 58.627 39.130 0.00 0.00 0.00 3.49
3749 4386 4.210328 CCGGAAATTTGTGGTTTTTAGCAC 59.790 41.667 0.00 0.00 0.00 4.40
3750 4387 4.085312 CGGAAATTTGTGGTTTTTAGCACG 60.085 41.667 0.00 0.00 0.00 5.34
3751 4388 4.318475 GGAAATTTGTGGTTTTTAGCACGC 60.318 41.667 0.00 0.00 0.00 5.34
3752 4389 1.828832 TTTGTGGTTTTTAGCACGCG 58.171 45.000 3.53 3.53 0.00 6.01
3753 4390 0.592754 TTGTGGTTTTTAGCACGCGC 60.593 50.000 5.73 0.00 38.99 6.86
3754 4391 2.072654 GTGGTTTTTAGCACGCGCG 61.073 57.895 30.96 30.96 45.49 6.86
3755 4392 2.250190 GGTTTTTAGCACGCGCGT 59.750 55.556 32.73 32.73 45.49 6.01
3756 4393 1.220169 TGGTTTTTAGCACGCGCGTA 61.220 50.000 37.24 18.77 45.49 4.42
3757 4394 0.110733 GGTTTTTAGCACGCGCGTAA 60.111 50.000 37.24 24.01 45.49 3.18
3758 4395 1.464521 GGTTTTTAGCACGCGCGTAAT 60.465 47.619 37.24 27.76 45.49 1.89
3759 4396 1.830044 GTTTTTAGCACGCGCGTAATC 59.170 47.619 37.24 25.73 45.49 1.75
3760 4397 0.023985 TTTTAGCACGCGCGTAATCG 59.976 50.000 37.24 24.17 45.49 3.34
3779 4416 3.418675 CTAAGCGAGCTCCAACGAA 57.581 52.632 8.47 0.00 0.00 3.85
3780 4417 0.992802 CTAAGCGAGCTCCAACGAAC 59.007 55.000 8.47 0.00 0.00 3.95
3781 4418 0.315886 TAAGCGAGCTCCAACGAACA 59.684 50.000 8.47 0.00 0.00 3.18
3782 4419 1.222115 AAGCGAGCTCCAACGAACAC 61.222 55.000 8.47 0.00 0.00 3.32
3783 4420 3.000080 GCGAGCTCCAACGAACACG 62.000 63.158 8.47 0.00 0.00 4.49
3784 4421 2.853914 GAGCTCCAACGAACACGC 59.146 61.111 0.87 0.00 0.00 5.34
3785 4422 1.954146 GAGCTCCAACGAACACGCA 60.954 57.895 0.87 0.00 0.00 5.24
3786 4423 1.495584 GAGCTCCAACGAACACGCAA 61.496 55.000 0.87 0.00 0.00 4.85
3787 4424 1.092921 AGCTCCAACGAACACGCAAA 61.093 50.000 0.00 0.00 0.00 3.68
3788 4425 0.248296 GCTCCAACGAACACGCAAAA 60.248 50.000 0.00 0.00 0.00 2.44
3789 4426 1.795889 GCTCCAACGAACACGCAAAAA 60.796 47.619 0.00 0.00 0.00 1.94
3790 4427 1.843753 CTCCAACGAACACGCAAAAAC 59.156 47.619 0.00 0.00 0.00 2.43
3791 4428 0.917939 CCAACGAACACGCAAAAACC 59.082 50.000 0.00 0.00 0.00 3.27
3792 4429 0.917939 CAACGAACACGCAAAAACCC 59.082 50.000 0.00 0.00 0.00 4.11
3793 4430 0.179132 AACGAACACGCAAAAACCCC 60.179 50.000 0.00 0.00 0.00 4.95
3794 4431 1.655959 CGAACACGCAAAAACCCCG 60.656 57.895 0.00 0.00 0.00 5.73
3795 4432 1.947146 GAACACGCAAAAACCCCGC 60.947 57.895 0.00 0.00 0.00 6.13
3810 4447 3.536394 CGCGCGCGGCATATAGAG 61.536 66.667 43.28 13.53 43.84 2.43
3811 4448 2.430921 GCGCGCGGCATATAGAGT 60.431 61.111 33.06 0.00 42.87 3.24
3812 4449 2.022129 GCGCGCGGCATATAGAGTT 61.022 57.895 33.06 0.00 42.87 3.01
3813 4450 1.945776 GCGCGCGGCATATAGAGTTC 61.946 60.000 33.06 5.61 42.87 3.01
3814 4451 0.663269 CGCGCGGCATATAGAGTTCA 60.663 55.000 24.84 0.00 0.00 3.18
3815 4452 1.063806 GCGCGGCATATAGAGTTCAG 58.936 55.000 8.83 0.00 0.00 3.02
3816 4453 1.702886 CGCGGCATATAGAGTTCAGG 58.297 55.000 0.00 0.00 0.00 3.86
3817 4454 1.670087 CGCGGCATATAGAGTTCAGGG 60.670 57.143 0.00 0.00 0.00 4.45
3818 4455 1.941668 GCGGCATATAGAGTTCAGGGC 60.942 57.143 0.00 0.00 0.00 5.19
3819 4456 1.670087 CGGCATATAGAGTTCAGGGCG 60.670 57.143 0.00 0.00 36.55 6.13
3820 4457 1.344763 GGCATATAGAGTTCAGGGCGT 59.655 52.381 0.00 0.00 0.00 5.68
3821 4458 2.408050 GCATATAGAGTTCAGGGCGTG 58.592 52.381 0.00 0.00 0.00 5.34
3822 4459 2.868044 GCATATAGAGTTCAGGGCGTGG 60.868 54.545 7.42 0.00 0.00 4.94
3823 4460 2.154567 TATAGAGTTCAGGGCGTGGT 57.845 50.000 7.42 0.00 0.00 4.16
3824 4461 0.824759 ATAGAGTTCAGGGCGTGGTC 59.175 55.000 7.42 2.57 0.00 4.02
3825 4462 0.251653 TAGAGTTCAGGGCGTGGTCT 60.252 55.000 7.42 9.52 0.00 3.85
3826 4463 1.374758 GAGTTCAGGGCGTGGTCTG 60.375 63.158 7.42 0.00 0.00 3.51
3827 4464 1.816863 GAGTTCAGGGCGTGGTCTGA 61.817 60.000 7.42 0.00 38.14 3.27
3828 4465 1.070786 GTTCAGGGCGTGGTCTGAA 59.929 57.895 7.42 3.25 44.67 3.02
3829 4466 1.833606 TTCAGGGCGTGGTCTGAAA 59.166 52.632 7.42 0.00 44.14 2.69
3830 4467 0.534203 TTCAGGGCGTGGTCTGAAAC 60.534 55.000 7.42 0.00 44.14 2.78
3831 4468 2.030562 AGGGCGTGGTCTGAAACG 59.969 61.111 9.16 9.16 42.61 3.60
3835 4472 3.966215 CGTGGTCTGAAACGCCAT 58.034 55.556 1.82 0.00 34.52 4.40
3836 4473 1.787847 CGTGGTCTGAAACGCCATC 59.212 57.895 1.82 0.00 34.52 3.51
3837 4474 1.787847 GTGGTCTGAAACGCCATCG 59.212 57.895 0.00 0.00 42.43 3.84
3838 4475 2.032634 TGGTCTGAAACGCCATCGC 61.033 57.895 0.00 0.00 39.84 4.58
3848 4485 3.947841 GCCATCGCGCGCCATTTA 61.948 61.111 27.95 7.09 0.00 1.40
3849 4486 2.945984 CCATCGCGCGCCATTTAT 59.054 55.556 27.95 9.61 0.00 1.40
3850 4487 1.282570 CCATCGCGCGCCATTTATT 59.717 52.632 27.95 0.00 0.00 1.40
3851 4488 0.317770 CCATCGCGCGCCATTTATTT 60.318 50.000 27.95 0.00 0.00 1.40
3852 4489 0.771756 CATCGCGCGCCATTTATTTG 59.228 50.000 27.95 8.13 0.00 2.32
3853 4490 0.934436 ATCGCGCGCCATTTATTTGC 60.934 50.000 27.95 0.00 0.00 3.68
3854 4491 1.586042 CGCGCGCCATTTATTTGCT 60.586 52.632 27.72 0.00 0.00 3.91
3855 4492 1.800332 CGCGCGCCATTTATTTGCTG 61.800 55.000 27.72 1.87 0.00 4.41
3856 4493 1.919340 CGCGCCATTTATTTGCTGC 59.081 52.632 0.00 0.00 0.00 5.25
3857 4494 1.800332 CGCGCCATTTATTTGCTGCG 61.800 55.000 0.00 0.00 44.38 5.18
3858 4495 1.919340 CGCCATTTATTTGCTGCGC 59.081 52.632 0.00 0.00 35.33 6.09
3859 4496 1.481819 CGCCATTTATTTGCTGCGCC 61.482 55.000 4.18 0.00 35.33 6.53
3860 4497 0.179103 GCCATTTATTTGCTGCGCCT 60.179 50.000 4.18 0.00 0.00 5.52
3861 4498 1.563111 CCATTTATTTGCTGCGCCTG 58.437 50.000 4.18 0.00 0.00 4.85
3862 4499 0.925466 CATTTATTTGCTGCGCCTGC 59.075 50.000 14.38 14.38 43.20 4.85
3863 4500 0.819582 ATTTATTTGCTGCGCCTGCT 59.180 45.000 20.27 6.11 43.34 4.24
3864 4501 1.458398 TTTATTTGCTGCGCCTGCTA 58.542 45.000 20.27 12.17 43.34 3.49
3865 4502 0.732571 TTATTTGCTGCGCCTGCTAC 59.267 50.000 20.27 0.00 43.34 3.58
3866 4503 1.095228 TATTTGCTGCGCCTGCTACC 61.095 55.000 20.27 0.00 43.34 3.18
3888 4525 3.106407 GCCACACACTCGAGCGTC 61.106 66.667 13.61 0.00 0.00 5.19
3889 4526 2.430921 CCACACACTCGAGCGTCC 60.431 66.667 13.61 0.00 0.00 4.79
3890 4527 2.801162 CACACACTCGAGCGTCCG 60.801 66.667 13.61 0.44 0.00 4.79
3891 4528 4.702081 ACACACTCGAGCGTCCGC 62.702 66.667 13.61 2.94 42.33 5.54
3903 4540 4.415332 GTCCGCTCGCGACTTCCA 62.415 66.667 13.51 0.00 42.83 3.53
3904 4541 3.449227 TCCGCTCGCGACTTCCAT 61.449 61.111 13.51 0.00 42.83 3.41
3905 4542 2.956964 CCGCTCGCGACTTCCATC 60.957 66.667 13.51 0.00 42.83 3.51
3906 4543 2.103143 CGCTCGCGACTTCCATCT 59.897 61.111 3.71 0.00 42.83 2.90
3907 4544 1.355563 CGCTCGCGACTTCCATCTA 59.644 57.895 3.71 0.00 42.83 1.98
3908 4545 0.930742 CGCTCGCGACTTCCATCTAC 60.931 60.000 3.71 0.00 42.83 2.59
3909 4546 0.595310 GCTCGCGACTTCCATCTACC 60.595 60.000 3.71 0.00 0.00 3.18
3910 4547 0.030908 CTCGCGACTTCCATCTACCC 59.969 60.000 3.71 0.00 0.00 3.69
3911 4548 0.395311 TCGCGACTTCCATCTACCCT 60.395 55.000 3.71 0.00 0.00 4.34
3912 4549 0.249073 CGCGACTTCCATCTACCCTG 60.249 60.000 0.00 0.00 0.00 4.45
3913 4550 1.112113 GCGACTTCCATCTACCCTGA 58.888 55.000 0.00 0.00 0.00 3.86
3914 4551 1.202428 GCGACTTCCATCTACCCTGAC 60.202 57.143 0.00 0.00 0.00 3.51
3915 4552 1.409427 CGACTTCCATCTACCCTGACC 59.591 57.143 0.00 0.00 0.00 4.02
3916 4553 1.763545 GACTTCCATCTACCCTGACCC 59.236 57.143 0.00 0.00 0.00 4.46
3917 4554 1.080498 ACTTCCATCTACCCTGACCCA 59.920 52.381 0.00 0.00 0.00 4.51
3918 4555 1.765314 CTTCCATCTACCCTGACCCAG 59.235 57.143 0.00 0.00 0.00 4.45
3926 4563 2.125106 CCTGACCCAGGCGTTAGC 60.125 66.667 0.00 0.00 45.13 3.09
3927 4564 2.509336 CTGACCCAGGCGTTAGCG 60.509 66.667 0.00 0.00 46.35 4.26
3951 4588 3.381136 CCCGCACCACCCCATTTG 61.381 66.667 0.00 0.00 0.00 2.32
3952 4589 2.600173 CCGCACCACCCCATTTGT 60.600 61.111 0.00 0.00 0.00 2.83
3953 4590 2.206536 CCGCACCACCCCATTTGTT 61.207 57.895 0.00 0.00 0.00 2.83
3954 4591 1.288752 CGCACCACCCCATTTGTTC 59.711 57.895 0.00 0.00 0.00 3.18
3955 4592 1.671166 GCACCACCCCATTTGTTCC 59.329 57.895 0.00 0.00 0.00 3.62
3956 4593 1.963679 CACCACCCCATTTGTTCCG 59.036 57.895 0.00 0.00 0.00 4.30
3957 4594 0.538516 CACCACCCCATTTGTTCCGA 60.539 55.000 0.00 0.00 0.00 4.55
3958 4595 0.538746 ACCACCCCATTTGTTCCGAC 60.539 55.000 0.00 0.00 0.00 4.79
3959 4596 1.582610 CCACCCCATTTGTTCCGACG 61.583 60.000 0.00 0.00 0.00 5.12
3960 4597 0.604243 CACCCCATTTGTTCCGACGA 60.604 55.000 0.00 0.00 0.00 4.20
3961 4598 0.604511 ACCCCATTTGTTCCGACGAC 60.605 55.000 0.00 0.00 0.00 4.34
3962 4599 1.303091 CCCCATTTGTTCCGACGACC 61.303 60.000 0.00 0.00 0.00 4.79
3963 4600 0.604243 CCCATTTGTTCCGACGACCA 60.604 55.000 0.00 0.00 0.00 4.02
3964 4601 1.448985 CCATTTGTTCCGACGACCAT 58.551 50.000 0.00 0.00 0.00 3.55
3965 4602 1.810151 CCATTTGTTCCGACGACCATT 59.190 47.619 0.00 0.00 0.00 3.16
3966 4603 2.159572 CCATTTGTTCCGACGACCATTC 60.160 50.000 0.00 0.00 0.00 2.67
3967 4604 1.515081 TTTGTTCCGACGACCATTCC 58.485 50.000 0.00 0.00 0.00 3.01
3968 4605 0.668096 TTGTTCCGACGACCATTCCG 60.668 55.000 0.00 0.00 0.00 4.30
3969 4606 1.808390 GTTCCGACGACCATTCCGG 60.808 63.158 0.00 0.00 43.02 5.14
3970 4607 3.652539 TTCCGACGACCATTCCGGC 62.653 63.158 0.00 0.00 41.55 6.13
3973 4610 4.814294 GACGACCATTCCGGCGCT 62.814 66.667 7.64 0.00 39.03 5.92
3974 4611 4.388499 ACGACCATTCCGGCGCTT 62.388 61.111 7.64 0.00 39.03 4.68
3975 4612 3.124921 CGACCATTCCGGCGCTTT 61.125 61.111 7.64 0.00 39.03 3.51
3976 4613 2.791927 GACCATTCCGGCGCTTTC 59.208 61.111 7.64 0.00 39.03 2.62
3977 4614 2.750237 ACCATTCCGGCGCTTTCC 60.750 61.111 7.64 0.00 39.03 3.13
3978 4615 3.518068 CCATTCCGGCGCTTTCCC 61.518 66.667 7.64 0.00 0.00 3.97
3979 4616 3.876198 CATTCCGGCGCTTTCCCG 61.876 66.667 7.64 0.73 45.17 5.14
3985 4622 4.564110 GGCGCTTTCCCGGCCTAT 62.564 66.667 7.64 0.00 46.56 2.57
3986 4623 2.424302 GCGCTTTCCCGGCCTATA 59.576 61.111 0.00 0.00 0.00 1.31
3987 4624 1.959738 GCGCTTTCCCGGCCTATAC 60.960 63.158 0.00 0.00 0.00 1.47
3988 4625 1.301479 CGCTTTCCCGGCCTATACC 60.301 63.158 0.00 0.00 0.00 2.73
3989 4626 1.072678 GCTTTCCCGGCCTATACCC 59.927 63.158 0.00 0.00 0.00 3.69
3990 4627 1.702022 GCTTTCCCGGCCTATACCCA 61.702 60.000 0.00 0.00 0.00 4.51
3991 4628 0.108019 CTTTCCCGGCCTATACCCAC 59.892 60.000 0.00 0.00 0.00 4.61
3992 4629 1.688269 TTTCCCGGCCTATACCCACG 61.688 60.000 0.00 0.00 0.00 4.94
3993 4630 4.309950 CCCGGCCTATACCCACGC 62.310 72.222 0.00 0.00 0.00 5.34
3994 4631 3.542676 CCGGCCTATACCCACGCA 61.543 66.667 0.00 0.00 0.00 5.24
3995 4632 2.029073 CGGCCTATACCCACGCAG 59.971 66.667 0.00 0.00 0.00 5.18
3996 4633 2.280865 GGCCTATACCCACGCAGC 60.281 66.667 0.00 0.00 0.00 5.25
3997 4634 2.808206 GGCCTATACCCACGCAGCT 61.808 63.158 0.00 0.00 0.00 4.24
3998 4635 1.595382 GCCTATACCCACGCAGCTG 60.595 63.158 10.11 10.11 0.00 4.24
3999 4636 1.595382 CCTATACCCACGCAGCTGC 60.595 63.158 29.12 29.12 37.78 5.25
4000 4637 1.595382 CTATACCCACGCAGCTGCC 60.595 63.158 32.07 15.05 37.91 4.85
4001 4638 3.439513 TATACCCACGCAGCTGCCG 62.440 63.158 32.07 26.91 37.91 5.69
4010 4647 4.093291 CAGCTGCCGCTTCCTCCT 62.093 66.667 0.00 0.00 46.47 3.69
4011 4648 3.780173 AGCTGCCGCTTCCTCCTC 61.780 66.667 0.00 0.00 46.47 3.71
4012 4649 4.847444 GCTGCCGCTTCCTCCTCC 62.847 72.222 0.00 0.00 0.00 4.30
4013 4650 4.168291 CTGCCGCTTCCTCCTCCC 62.168 72.222 0.00 0.00 0.00 4.30
4014 4651 4.722535 TGCCGCTTCCTCCTCCCT 62.723 66.667 0.00 0.00 0.00 4.20
4015 4652 3.855853 GCCGCTTCCTCCTCCCTC 61.856 72.222 0.00 0.00 0.00 4.30
4016 4653 3.157949 CCGCTTCCTCCTCCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
4017 4654 2.364317 CGCTTCCTCCTCCCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
4018 4655 2.430610 CGCTTCCTCCTCCCTCCAG 61.431 68.421 0.00 0.00 0.00 3.86
4019 4656 1.306568 GCTTCCTCCTCCCTCCAGT 60.307 63.158 0.00 0.00 0.00 4.00
4020 4657 1.334384 GCTTCCTCCTCCCTCCAGTC 61.334 65.000 0.00 0.00 0.00 3.51
4021 4658 1.000486 TTCCTCCTCCCTCCAGTCG 60.000 63.158 0.00 0.00 0.00 4.18
4022 4659 3.151022 CCTCCTCCCTCCAGTCGC 61.151 72.222 0.00 0.00 0.00 5.19
4023 4660 3.151022 CTCCTCCCTCCAGTCGCC 61.151 72.222 0.00 0.00 0.00 5.54
4026 4663 3.827898 CTCCCTCCAGTCGCCGTC 61.828 72.222 0.00 0.00 0.00 4.79
4050 4687 4.520846 CGCGCGTGCCATTCCTTC 62.521 66.667 24.19 0.00 38.08 3.46
4051 4688 4.520846 GCGCGTGCCATTCCTTCG 62.521 66.667 10.56 0.00 33.98 3.79
4052 4689 2.813474 CGCGTGCCATTCCTTCGA 60.813 61.111 0.00 0.00 0.00 3.71
4053 4690 2.785258 GCGTGCCATTCCTTCGAC 59.215 61.111 0.00 0.00 0.00 4.20
4054 4691 3.081133 CGTGCCATTCCTTCGACG 58.919 61.111 0.00 0.00 0.00 5.12
4055 4692 1.445410 CGTGCCATTCCTTCGACGA 60.445 57.895 0.00 0.00 0.00 4.20
4056 4693 1.011968 CGTGCCATTCCTTCGACGAA 61.012 55.000 10.34 10.34 0.00 3.85
4057 4694 0.442699 GTGCCATTCCTTCGACGAAC 59.557 55.000 6.10 0.00 0.00 3.95
4058 4695 0.034198 TGCCATTCCTTCGACGAACA 59.966 50.000 6.10 0.00 0.00 3.18
4059 4696 1.153353 GCCATTCCTTCGACGAACAA 58.847 50.000 6.10 2.99 0.00 2.83
4060 4697 1.136057 GCCATTCCTTCGACGAACAAC 60.136 52.381 6.10 0.00 0.00 3.32
4062 4699 0.788391 ATTCCTTCGACGAACAACGC 59.212 50.000 6.10 0.00 46.94 4.84
4063 4700 1.216941 TTCCTTCGACGAACAACGCC 61.217 55.000 6.10 0.00 46.94 5.68
4064 4701 1.663702 CCTTCGACGAACAACGCCT 60.664 57.895 6.10 0.00 46.94 5.52
4065 4702 1.487231 CTTCGACGAACAACGCCTG 59.513 57.895 6.10 0.00 46.94 4.85
4066 4703 0.937699 CTTCGACGAACAACGCCTGA 60.938 55.000 6.10 0.00 46.94 3.86
4067 4704 1.210545 TTCGACGAACAACGCCTGAC 61.211 55.000 6.10 0.00 46.94 3.51
4068 4705 2.654912 CGACGAACAACGCCTGACC 61.655 63.158 0.00 0.00 46.94 4.02
4069 4706 2.654912 GACGAACAACGCCTGACCG 61.655 63.158 0.00 0.00 46.94 4.79
4070 4707 4.072088 CGAACAACGCCTGACCGC 62.072 66.667 0.00 0.00 34.51 5.68
4071 4708 2.665185 GAACAACGCCTGACCGCT 60.665 61.111 0.00 0.00 0.00 5.52
4072 4709 2.665185 AACAACGCCTGACCGCTC 60.665 61.111 0.00 0.00 0.00 5.03
4073 4710 3.454587 AACAACGCCTGACCGCTCA 62.455 57.895 0.00 0.00 0.00 4.26
4074 4711 3.414700 CAACGCCTGACCGCTCAC 61.415 66.667 0.00 0.00 0.00 3.51
4075 4712 3.616721 AACGCCTGACCGCTCACT 61.617 61.111 0.00 0.00 0.00 3.41
4076 4713 2.273179 AACGCCTGACCGCTCACTA 61.273 57.895 0.00 0.00 0.00 2.74
4077 4714 2.202623 CGCCTGACCGCTCACTAC 60.203 66.667 0.00 0.00 0.00 2.73
4078 4715 2.184579 GCCTGACCGCTCACTACC 59.815 66.667 0.00 0.00 0.00 3.18
4079 4716 2.490217 CCTGACCGCTCACTACCG 59.510 66.667 0.00 0.00 0.00 4.02
4080 4717 2.202623 CTGACCGCTCACTACCGC 60.203 66.667 0.00 0.00 0.00 5.68
4081 4718 2.675423 TGACCGCTCACTACCGCT 60.675 61.111 0.00 0.00 0.00 5.52
4082 4719 2.102553 GACCGCTCACTACCGCTC 59.897 66.667 0.00 0.00 0.00 5.03
4083 4720 3.736482 GACCGCTCACTACCGCTCG 62.736 68.421 0.00 0.00 0.00 5.03
4084 4721 4.554363 CCGCTCACTACCGCTCGG 62.554 72.222 6.79 6.79 42.03 4.63
4102 4739 2.280524 CGCCCACAAGGTGTTCGA 60.281 61.111 0.00 0.00 41.64 3.71
4103 4740 2.604174 CGCCCACAAGGTGTTCGAC 61.604 63.158 0.00 0.00 41.64 4.20
4104 4741 1.525077 GCCCACAAGGTGTTCGACA 60.525 57.895 0.00 0.00 38.26 4.35
4105 4742 1.098712 GCCCACAAGGTGTTCGACAA 61.099 55.000 0.00 0.00 38.26 3.18
4106 4743 1.384525 CCCACAAGGTGTTCGACAAA 58.615 50.000 0.00 0.00 0.00 2.83
4107 4744 1.746220 CCCACAAGGTGTTCGACAAAA 59.254 47.619 0.00 0.00 0.00 2.44
4108 4745 2.478879 CCCACAAGGTGTTCGACAAAAC 60.479 50.000 0.00 0.00 0.00 2.43
4109 4746 2.436670 CACAAGGTGTTCGACAAAACG 58.563 47.619 0.00 0.00 31.58 3.60
4110 4747 1.202098 ACAAGGTGTTCGACAAAACGC 60.202 47.619 0.00 0.00 38.60 4.84
4111 4748 1.063469 CAAGGTGTTCGACAAAACGCT 59.937 47.619 0.00 0.00 39.16 5.07
4112 4749 1.375551 AGGTGTTCGACAAAACGCTT 58.624 45.000 0.00 0.00 39.16 4.68
4113 4750 1.063469 AGGTGTTCGACAAAACGCTTG 59.937 47.619 0.00 0.00 39.16 4.01
4114 4751 0.837605 GTGTTCGACAAAACGCTTGC 59.162 50.000 0.00 0.00 36.84 4.01
4115 4752 0.448197 TGTTCGACAAAACGCTTGCA 59.552 45.000 0.00 0.00 31.58 4.08
4116 4753 1.135660 TGTTCGACAAAACGCTTGCAA 60.136 42.857 0.00 0.00 31.58 4.08
4117 4754 1.512771 GTTCGACAAAACGCTTGCAAG 59.487 47.619 22.44 22.44 0.00 4.01
4118 4755 0.028770 TCGACAAAACGCTTGCAAGG 59.971 50.000 27.10 18.79 0.00 3.61
4119 4756 0.248458 CGACAAAACGCTTGCAAGGT 60.248 50.000 27.10 19.42 0.00 3.50
4120 4757 1.003331 CGACAAAACGCTTGCAAGGTA 60.003 47.619 27.10 0.00 0.00 3.08
4121 4758 2.350388 CGACAAAACGCTTGCAAGGTAT 60.350 45.455 27.10 12.77 0.00 2.73
4122 4759 2.979813 GACAAAACGCTTGCAAGGTATG 59.020 45.455 27.10 22.62 0.00 2.39
4123 4760 2.360801 ACAAAACGCTTGCAAGGTATGT 59.639 40.909 27.10 23.12 0.00 2.29
4124 4761 3.566322 ACAAAACGCTTGCAAGGTATGTA 59.434 39.130 27.10 0.00 0.00 2.29
4125 4762 4.217550 ACAAAACGCTTGCAAGGTATGTAT 59.782 37.500 27.10 6.07 0.00 2.29
4126 4763 5.160641 CAAAACGCTTGCAAGGTATGTATT 58.839 37.500 27.10 11.16 0.00 1.89
4127 4764 4.355543 AACGCTTGCAAGGTATGTATTG 57.644 40.909 27.10 0.00 0.00 1.90
4135 4772 5.567138 GCAAGGTATGTATTGCTTCAACT 57.433 39.130 2.80 0.00 46.49 3.16
4136 4773 5.954335 GCAAGGTATGTATTGCTTCAACTT 58.046 37.500 2.80 0.00 46.49 2.66
4137 4774 5.801947 GCAAGGTATGTATTGCTTCAACTTG 59.198 40.000 2.80 0.00 46.49 3.16
4138 4775 6.349280 GCAAGGTATGTATTGCTTCAACTTGA 60.349 38.462 0.00 0.00 46.49 3.02
4139 4776 6.743575 AGGTATGTATTGCTTCAACTTGAC 57.256 37.500 0.00 0.00 0.00 3.18
4140 4777 6.237901 AGGTATGTATTGCTTCAACTTGACA 58.762 36.000 0.00 0.00 0.00 3.58
4141 4778 6.886459 AGGTATGTATTGCTTCAACTTGACAT 59.114 34.615 0.00 0.00 0.00 3.06
4142 4779 7.394359 AGGTATGTATTGCTTCAACTTGACATT 59.606 33.333 0.00 0.00 0.00 2.71
4143 4780 8.028938 GGTATGTATTGCTTCAACTTGACATTT 58.971 33.333 0.00 0.00 0.00 2.32
4144 4781 9.410556 GTATGTATTGCTTCAACTTGACATTTT 57.589 29.630 0.00 0.00 0.00 1.82
4145 4782 8.891671 ATGTATTGCTTCAACTTGACATTTTT 57.108 26.923 0.00 0.00 0.00 1.94
4170 4807 5.676532 CATGAATTTGGTGCATGTTGTTT 57.323 34.783 0.00 0.00 35.78 2.83
4171 4808 5.444983 CATGAATTTGGTGCATGTTGTTTG 58.555 37.500 0.00 0.00 35.78 2.93
4172 4809 4.511527 TGAATTTGGTGCATGTTGTTTGT 58.488 34.783 0.00 0.00 0.00 2.83
4173 4810 5.664457 TGAATTTGGTGCATGTTGTTTGTA 58.336 33.333 0.00 0.00 0.00 2.41
4174 4811 5.752472 TGAATTTGGTGCATGTTGTTTGTAG 59.248 36.000 0.00 0.00 0.00 2.74
4175 4812 4.727507 TTTGGTGCATGTTGTTTGTAGT 57.272 36.364 0.00 0.00 0.00 2.73
4176 4813 4.727507 TTGGTGCATGTTGTTTGTAGTT 57.272 36.364 0.00 0.00 0.00 2.24
4177 4814 4.727507 TGGTGCATGTTGTTTGTAGTTT 57.272 36.364 0.00 0.00 0.00 2.66
4178 4815 5.078411 TGGTGCATGTTGTTTGTAGTTTT 57.922 34.783 0.00 0.00 0.00 2.43
4179 4816 5.482908 TGGTGCATGTTGTTTGTAGTTTTT 58.517 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.832719 TAGCTGGCTACCAAACCGCA 61.833 55.000 0.00 0.00 30.80 5.69
71 72 7.629157 TGATCAAACACATGAATTCTACCCTA 58.371 34.615 7.05 0.00 32.06 3.53
100 101 1.451028 GGTGCAGGAGCCACTGATC 60.451 63.158 9.25 0.00 40.97 2.92
141 142 1.585297 AAACGTACCAACAGGGAACG 58.415 50.000 9.24 9.24 41.15 3.95
219 222 5.803020 AATGATCGACTTTTCTTGCCTAC 57.197 39.130 0.00 0.00 0.00 3.18
257 260 3.260475 TCACCCTGGACGAATGTAATG 57.740 47.619 0.00 0.00 0.00 1.90
261 264 3.992943 TTTATCACCCTGGACGAATGT 57.007 42.857 0.00 0.00 0.00 2.71
262 265 5.835113 AAATTTATCACCCTGGACGAATG 57.165 39.130 0.00 0.00 0.00 2.67
263 266 6.659824 ACTAAATTTATCACCCTGGACGAAT 58.340 36.000 0.00 0.00 0.00 3.34
265 268 5.687166 ACTAAATTTATCACCCTGGACGA 57.313 39.130 0.00 0.00 0.00 4.20
266 269 5.878116 TCAACTAAATTTATCACCCTGGACG 59.122 40.000 0.00 0.00 0.00 4.79
268 271 5.878116 CGTCAACTAAATTTATCACCCTGGA 59.122 40.000 0.00 0.00 0.00 3.86
269 272 5.878116 TCGTCAACTAAATTTATCACCCTGG 59.122 40.000 0.00 0.00 0.00 4.45
270 273 6.594159 ACTCGTCAACTAAATTTATCACCCTG 59.406 38.462 0.00 0.00 0.00 4.45
271 274 6.708285 ACTCGTCAACTAAATTTATCACCCT 58.292 36.000 0.00 0.00 0.00 4.34
272 275 6.980051 ACTCGTCAACTAAATTTATCACCC 57.020 37.500 0.00 0.00 0.00 4.61
273 276 8.548721 CCATACTCGTCAACTAAATTTATCACC 58.451 37.037 0.00 0.00 0.00 4.02
274 277 8.062448 GCCATACTCGTCAACTAAATTTATCAC 58.938 37.037 0.00 0.00 0.00 3.06
278 281 7.908827 TTGCCATACTCGTCAACTAAATTTA 57.091 32.000 0.00 0.00 0.00 1.40
290 293 1.480954 AGACGGATTTGCCATACTCGT 59.519 47.619 0.00 0.00 35.94 4.18
291 294 2.128035 GAGACGGATTTGCCATACTCG 58.872 52.381 0.00 0.00 35.94 4.18
434 460 1.132527 TCTTCCCCTTTGTCCTCTCCA 60.133 52.381 0.00 0.00 0.00 3.86
632 658 3.053291 TTGCGTCGTGGGCAATCC 61.053 61.111 6.47 0.00 44.79 3.01
666 701 5.629435 CGATTGGCTGATTGATTGATTGATG 59.371 40.000 0.00 0.00 0.00 3.07
667 702 5.769367 CGATTGGCTGATTGATTGATTGAT 58.231 37.500 0.00 0.00 0.00 2.57
668 703 4.498513 GCGATTGGCTGATTGATTGATTGA 60.499 41.667 0.00 0.00 39.11 2.57
669 704 3.734231 GCGATTGGCTGATTGATTGATTG 59.266 43.478 0.00 0.00 39.11 2.67
762 798 3.303928 GGGGGCGTATCGGAGGAG 61.304 72.222 0.00 0.00 0.00 3.69
766 802 2.203451 GAGAGGGGGCGTATCGGA 60.203 66.667 0.00 0.00 0.00 4.55
791 849 1.683319 GGGAAGGGCAGAGGATTTGTC 60.683 57.143 0.00 0.00 0.00 3.18
794 852 0.553612 AGGGGAAGGGCAGAGGATTT 60.554 55.000 0.00 0.00 0.00 2.17
937 1415 4.145052 ACCAAACACCAAAGATTCTCCTC 58.855 43.478 0.00 0.00 0.00 3.71
997 1475 2.287668 GGAGCAGCGTATTACTCATCGT 60.288 50.000 0.00 0.00 0.00 3.73
1287 1765 5.541845 CATAGGAAATCCGTCAGCAAGATA 58.458 41.667 0.00 0.00 42.08 1.98
1339 1817 2.879646 CACTGCGTACTTTTTGGGGTTA 59.120 45.455 0.00 0.00 0.00 2.85
1488 2029 2.418197 GGTGCCTGCATCGTAACTAGAA 60.418 50.000 0.00 0.00 0.00 2.10
1633 2174 2.252072 ATCAACATCCACGGGGTCGG 62.252 60.000 2.12 0.00 41.39 4.79
1638 2179 2.754552 ACAATCAATCAACATCCACGGG 59.245 45.455 0.00 0.00 0.00 5.28
1665 2206 3.809279 CACTCACATTACAGCTCACACAA 59.191 43.478 0.00 0.00 0.00 3.33
1671 2212 5.178797 ACCATAACACTCACATTACAGCTC 58.821 41.667 0.00 0.00 0.00 4.09
1673 2214 5.880054 AACCATAACACTCACATTACAGC 57.120 39.130 0.00 0.00 0.00 4.40
1691 2232 1.876416 GCTCTGCCGAACTACAAACCA 60.876 52.381 0.00 0.00 0.00 3.67
2132 2673 6.441093 TCCAAGCAGAATAATAGTGCAAAG 57.559 37.500 0.00 0.00 39.80 2.77
2224 2767 5.376625 AGAGCTAAATATCGCCATTCCAAA 58.623 37.500 0.00 0.00 0.00 3.28
2305 2854 9.760660 CTCTTCAAACAATAAAAATCCTAGTCG 57.239 33.333 0.00 0.00 0.00 4.18
2779 3408 4.550577 TGTCTGCAATATAATTGTGCGG 57.449 40.909 0.00 0.00 44.42 5.69
2820 3449 5.394333 GGAGTTACCAGACTGATCAGGTTAC 60.394 48.000 26.08 17.75 41.81 2.50
2829 3458 1.267121 GGCAGGAGTTACCAGACTGA 58.733 55.000 3.32 0.00 42.04 3.41
2869 3498 7.870954 TCTTTTCGTGTTGTGTTATGATAGTCT 59.129 33.333 0.00 0.00 0.00 3.24
2972 3601 5.794894 TGGTTTGGAAAAGCAAACAAGTTA 58.205 33.333 1.73 0.00 41.55 2.24
2990 3619 4.523083 TGTCTAGCAACAGAGTTTGGTTT 58.477 39.130 0.00 0.00 38.20 3.27
3190 3819 6.148645 CGCAAAACCATATGTATATGTAGCCA 59.851 38.462 10.14 0.00 38.73 4.75
3222 3851 1.340600 GGTAACCAGGCAAGGCATACA 60.341 52.381 11.74 0.00 0.00 2.29
3463 4093 6.325028 TGGTGGAATCAATTGACAAAAGGTTA 59.675 34.615 11.07 0.00 0.00 2.85
3474 4104 2.094390 CAGCAGGTGGTGGAATCAATTG 60.094 50.000 0.00 0.00 39.67 2.32
3477 4107 0.895100 GCAGCAGGTGGTGGAATCAA 60.895 55.000 10.97 0.00 43.24 2.57
3478 4108 1.303561 GCAGCAGGTGGTGGAATCA 60.304 57.895 10.97 0.00 43.24 2.57
3507 4137 4.553330 TCCTTACAAGCAGGAGGTTAAG 57.447 45.455 0.00 0.00 35.34 1.85
3525 4155 3.553828 TCACCGTCAGTTTTCTTTCCT 57.446 42.857 0.00 0.00 0.00 3.36
3527 4157 7.829378 ACTATATCACCGTCAGTTTTCTTTC 57.171 36.000 0.00 0.00 0.00 2.62
3541 4171 5.269991 TCCACTAGGGCATACTATATCACC 58.730 45.833 0.00 0.00 36.21 4.02
3556 4186 3.049080 GCCCAGGCCTTCCACTAGG 62.049 68.421 0.00 0.00 38.40 3.02
3578 4208 2.158813 ACGGGCTTCCTTACATACATGG 60.159 50.000 0.00 0.00 0.00 3.66
3579 4209 3.194005 ACGGGCTTCCTTACATACATG 57.806 47.619 0.00 0.00 0.00 3.21
3580 4210 4.407945 AGTTACGGGCTTCCTTACATACAT 59.592 41.667 0.00 0.00 0.00 2.29
3581 4211 3.770933 AGTTACGGGCTTCCTTACATACA 59.229 43.478 0.00 0.00 0.00 2.29
3582 4212 4.117685 CAGTTACGGGCTTCCTTACATAC 58.882 47.826 0.00 0.00 0.00 2.39
3583 4213 3.431207 GCAGTTACGGGCTTCCTTACATA 60.431 47.826 0.00 0.00 0.00 2.29
3674 4308 6.402983 GGAGATGCTCTAAATATTGAATGGCG 60.403 42.308 0.00 0.00 0.00 5.69
3690 4327 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
3691 4328 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
3692 4329 2.747460 TGCGGCTGTTGGAGATGC 60.747 61.111 0.00 0.00 0.00 3.91
3693 4330 0.108186 TAGTGCGGCTGTTGGAGATG 60.108 55.000 0.00 0.00 0.00 2.90
3694 4331 0.833287 ATAGTGCGGCTGTTGGAGAT 59.167 50.000 0.00 0.00 0.00 2.75
3695 4332 1.480789 TATAGTGCGGCTGTTGGAGA 58.519 50.000 0.00 0.00 0.00 3.71
3696 4333 2.533266 ATATAGTGCGGCTGTTGGAG 57.467 50.000 0.00 0.00 0.00 3.86
3697 4334 3.802329 GCTTATATAGTGCGGCTGTTGGA 60.802 47.826 0.00 0.00 0.00 3.53
3698 4335 2.480419 GCTTATATAGTGCGGCTGTTGG 59.520 50.000 0.00 0.00 0.00 3.77
3699 4336 2.155732 CGCTTATATAGTGCGGCTGTTG 59.844 50.000 18.44 0.00 45.07 3.33
3700 4337 2.404215 CGCTTATATAGTGCGGCTGTT 58.596 47.619 18.44 0.00 45.07 3.16
3701 4338 2.065993 CGCTTATATAGTGCGGCTGT 57.934 50.000 18.44 0.00 45.07 4.40
3722 4359 2.503809 CCACAAATTTCCGGCGCG 60.504 61.111 0.00 0.00 0.00 6.86
3723 4360 0.598942 AAACCACAAATTTCCGGCGC 60.599 50.000 0.00 0.00 0.00 6.53
3724 4361 1.859383 AAAACCACAAATTTCCGGCG 58.141 45.000 0.00 0.00 0.00 6.46
3725 4362 3.185594 GCTAAAAACCACAAATTTCCGGC 59.814 43.478 0.00 0.00 0.00 6.13
3726 4363 4.210328 GTGCTAAAAACCACAAATTTCCGG 59.790 41.667 0.00 0.00 32.37 5.14
3727 4364 4.085312 CGTGCTAAAAACCACAAATTTCCG 60.085 41.667 0.00 0.00 32.37 4.30
3728 4365 4.318475 GCGTGCTAAAAACCACAAATTTCC 60.318 41.667 0.00 0.00 32.37 3.13
3729 4366 4.605135 CGCGTGCTAAAAACCACAAATTTC 60.605 41.667 0.00 0.00 32.37 2.17
3730 4367 3.244111 CGCGTGCTAAAAACCACAAATTT 59.756 39.130 0.00 0.00 32.37 1.82
3731 4368 2.792116 CGCGTGCTAAAAACCACAAATT 59.208 40.909 0.00 0.00 32.37 1.82
3732 4369 2.389998 CGCGTGCTAAAAACCACAAAT 58.610 42.857 0.00 0.00 32.37 2.32
3733 4370 1.828832 CGCGTGCTAAAAACCACAAA 58.171 45.000 0.00 0.00 32.37 2.83
3734 4371 0.592754 GCGCGTGCTAAAAACCACAA 60.593 50.000 15.02 0.00 38.39 3.33
3735 4372 1.009449 GCGCGTGCTAAAAACCACA 60.009 52.632 15.02 0.00 38.39 4.17
3736 4373 2.072654 CGCGCGTGCTAAAAACCAC 61.073 57.895 24.19 0.00 39.65 4.16
3737 4374 1.220169 TACGCGCGTGCTAAAAACCA 61.220 50.000 42.78 18.35 39.65 3.67
3738 4375 0.110733 TTACGCGCGTGCTAAAAACC 60.111 50.000 42.78 0.00 39.65 3.27
3739 4376 1.830044 GATTACGCGCGTGCTAAAAAC 59.170 47.619 42.78 23.98 39.65 2.43
3740 4377 1.525384 CGATTACGCGCGTGCTAAAAA 60.525 47.619 42.78 28.62 39.65 1.94
3741 4378 0.023985 CGATTACGCGCGTGCTAAAA 59.976 50.000 42.78 29.36 39.65 1.52
3742 4379 1.626905 CGATTACGCGCGTGCTAAA 59.373 52.632 42.78 29.75 39.65 1.85
3743 4380 3.291610 CGATTACGCGCGTGCTAA 58.708 55.556 42.78 30.12 39.65 3.09
3761 4398 0.992802 GTTCGTTGGAGCTCGCTTAG 59.007 55.000 7.83 0.00 0.00 2.18
3762 4399 0.315886 TGTTCGTTGGAGCTCGCTTA 59.684 50.000 7.83 0.00 0.00 3.09
3763 4400 1.069090 TGTTCGTTGGAGCTCGCTT 59.931 52.632 7.83 0.00 0.00 4.68
3764 4401 1.664965 GTGTTCGTTGGAGCTCGCT 60.665 57.895 7.83 0.00 0.00 4.93
3765 4402 2.853914 GTGTTCGTTGGAGCTCGC 59.146 61.111 7.83 1.18 0.00 5.03
3766 4403 3.000080 GCGTGTTCGTTGGAGCTCG 62.000 63.158 7.83 0.00 41.36 5.03
3767 4404 1.495584 TTGCGTGTTCGTTGGAGCTC 61.496 55.000 4.71 4.71 39.49 4.09
3768 4405 1.092921 TTTGCGTGTTCGTTGGAGCT 61.093 50.000 0.00 0.00 39.49 4.09
3769 4406 0.248296 TTTTGCGTGTTCGTTGGAGC 60.248 50.000 0.00 0.00 39.49 4.70
3770 4407 1.843753 GTTTTTGCGTGTTCGTTGGAG 59.156 47.619 0.00 0.00 39.49 3.86
3771 4408 1.467713 GGTTTTTGCGTGTTCGTTGGA 60.468 47.619 0.00 0.00 39.49 3.53
3772 4409 0.917939 GGTTTTTGCGTGTTCGTTGG 59.082 50.000 0.00 0.00 39.49 3.77
3773 4410 0.917939 GGGTTTTTGCGTGTTCGTTG 59.082 50.000 0.00 0.00 39.49 4.10
3774 4411 0.179132 GGGGTTTTTGCGTGTTCGTT 60.179 50.000 0.00 0.00 39.49 3.85
3775 4412 1.434287 GGGGTTTTTGCGTGTTCGT 59.566 52.632 0.00 0.00 39.49 3.85
3776 4413 1.655959 CGGGGTTTTTGCGTGTTCG 60.656 57.895 0.00 0.00 40.37 3.95
3777 4414 1.947146 GCGGGGTTTTTGCGTGTTC 60.947 57.895 0.00 0.00 0.00 3.18
3778 4415 2.105328 GCGGGGTTTTTGCGTGTT 59.895 55.556 0.00 0.00 0.00 3.32
3779 4416 4.258932 CGCGGGGTTTTTGCGTGT 62.259 61.111 0.00 0.00 46.29 4.49
3793 4430 3.536394 CTCTATATGCCGCGCGCG 61.536 66.667 43.73 43.73 42.08 6.86
3794 4431 1.945776 GAACTCTATATGCCGCGCGC 61.946 60.000 27.36 23.91 38.31 6.86
3795 4432 0.663269 TGAACTCTATATGCCGCGCG 60.663 55.000 25.67 25.67 0.00 6.86
3796 4433 1.063806 CTGAACTCTATATGCCGCGC 58.936 55.000 0.00 0.00 0.00 6.86
3797 4434 1.670087 CCCTGAACTCTATATGCCGCG 60.670 57.143 0.00 0.00 0.00 6.46
3798 4435 1.941668 GCCCTGAACTCTATATGCCGC 60.942 57.143 0.00 0.00 0.00 6.53
3799 4436 1.670087 CGCCCTGAACTCTATATGCCG 60.670 57.143 0.00 0.00 0.00 5.69
3800 4437 1.344763 ACGCCCTGAACTCTATATGCC 59.655 52.381 0.00 0.00 0.00 4.40
3801 4438 2.408050 CACGCCCTGAACTCTATATGC 58.592 52.381 0.00 0.00 0.00 3.14
3802 4439 2.365617 ACCACGCCCTGAACTCTATATG 59.634 50.000 0.00 0.00 0.00 1.78
3803 4440 2.628657 GACCACGCCCTGAACTCTATAT 59.371 50.000 0.00 0.00 0.00 0.86
3804 4441 2.029623 GACCACGCCCTGAACTCTATA 58.970 52.381 0.00 0.00 0.00 1.31
3805 4442 0.824759 GACCACGCCCTGAACTCTAT 59.175 55.000 0.00 0.00 0.00 1.98
3806 4443 0.251653 AGACCACGCCCTGAACTCTA 60.252 55.000 0.00 0.00 0.00 2.43
3807 4444 1.534235 AGACCACGCCCTGAACTCT 60.534 57.895 0.00 0.00 0.00 3.24
3808 4445 1.374758 CAGACCACGCCCTGAACTC 60.375 63.158 0.00 0.00 32.37 3.01
3809 4446 1.407656 TTCAGACCACGCCCTGAACT 61.408 55.000 0.00 0.00 42.48 3.01
3810 4447 0.534203 TTTCAGACCACGCCCTGAAC 60.534 55.000 0.00 0.00 45.69 3.18
3811 4448 0.534203 GTTTCAGACCACGCCCTGAA 60.534 55.000 0.00 0.00 44.75 3.02
3812 4449 1.070786 GTTTCAGACCACGCCCTGA 59.929 57.895 0.00 0.00 37.61 3.86
3813 4450 2.317609 CGTTTCAGACCACGCCCTG 61.318 63.158 0.00 0.00 0.00 4.45
3814 4451 2.030562 CGTTTCAGACCACGCCCT 59.969 61.111 0.00 0.00 0.00 5.19
3818 4455 1.787847 GATGGCGTTTCAGACCACG 59.212 57.895 0.00 0.00 35.99 4.94
3819 4456 1.787847 CGATGGCGTTTCAGACCAC 59.212 57.895 0.00 0.00 35.99 4.16
3820 4457 2.032634 GCGATGGCGTTTCAGACCA 61.033 57.895 0.00 0.00 40.36 4.02
3821 4458 2.785258 GCGATGGCGTTTCAGACC 59.215 61.111 0.00 0.00 40.36 3.85
3831 4468 2.731587 AATAAATGGCGCGCGATGGC 62.732 55.000 37.18 17.84 0.00 4.40
3832 4469 0.317770 AAATAAATGGCGCGCGATGG 60.318 50.000 37.18 4.39 0.00 3.51
3833 4470 0.771756 CAAATAAATGGCGCGCGATG 59.228 50.000 37.18 13.46 0.00 3.84
3834 4471 0.934436 GCAAATAAATGGCGCGCGAT 60.934 50.000 37.18 25.10 0.00 4.58
3835 4472 1.585002 GCAAATAAATGGCGCGCGA 60.585 52.632 37.18 23.73 0.00 5.87
3836 4473 1.586042 AGCAAATAAATGGCGCGCG 60.586 52.632 28.44 28.44 0.00 6.86
3837 4474 1.919340 CAGCAAATAAATGGCGCGC 59.081 52.632 25.94 25.94 0.00 6.86
3838 4475 1.800332 CGCAGCAAATAAATGGCGCG 61.800 55.000 0.00 0.00 41.22 6.86
3839 4476 1.919340 CGCAGCAAATAAATGGCGC 59.081 52.632 0.00 0.00 37.96 6.53
3871 4508 3.106407 GACGCTCGAGTGTGTGGC 61.106 66.667 34.60 17.15 39.12 5.01
3872 4509 2.430921 GGACGCTCGAGTGTGTGG 60.431 66.667 34.60 9.84 39.12 4.17
3873 4510 2.801162 CGGACGCTCGAGTGTGTG 60.801 66.667 34.60 21.95 39.12 3.82
3874 4511 4.702081 GCGGACGCTCGAGTGTGT 62.702 66.667 34.60 20.11 39.12 3.72
3886 4523 3.701604 ATGGAAGTCGCGAGCGGAC 62.702 63.158 10.24 13.46 40.25 4.79
3887 4524 3.411418 GATGGAAGTCGCGAGCGGA 62.411 63.158 10.24 1.70 40.25 5.54
3888 4525 2.060004 TAGATGGAAGTCGCGAGCGG 62.060 60.000 10.24 0.00 40.25 5.52
3889 4526 0.930742 GTAGATGGAAGTCGCGAGCG 60.931 60.000 10.24 11.64 41.35 5.03
3890 4527 0.595310 GGTAGATGGAAGTCGCGAGC 60.595 60.000 10.24 4.59 0.00 5.03
3891 4528 0.030908 GGGTAGATGGAAGTCGCGAG 59.969 60.000 10.24 0.00 0.00 5.03
3892 4529 0.395311 AGGGTAGATGGAAGTCGCGA 60.395 55.000 3.71 3.71 0.00 5.87
3893 4530 0.249073 CAGGGTAGATGGAAGTCGCG 60.249 60.000 0.00 0.00 0.00 5.87
3894 4531 1.112113 TCAGGGTAGATGGAAGTCGC 58.888 55.000 0.00 0.00 0.00 5.19
3895 4532 1.409427 GGTCAGGGTAGATGGAAGTCG 59.591 57.143 0.00 0.00 0.00 4.18
3896 4533 1.763545 GGGTCAGGGTAGATGGAAGTC 59.236 57.143 0.00 0.00 0.00 3.01
3897 4534 1.080498 TGGGTCAGGGTAGATGGAAGT 59.920 52.381 0.00 0.00 0.00 3.01
3898 4535 1.765314 CTGGGTCAGGGTAGATGGAAG 59.235 57.143 0.00 0.00 0.00 3.46
3899 4536 1.879575 CTGGGTCAGGGTAGATGGAA 58.120 55.000 0.00 0.00 0.00 3.53
3900 4537 3.635099 CTGGGTCAGGGTAGATGGA 57.365 57.895 0.00 0.00 0.00 3.41
3910 4547 2.509336 CGCTAACGCCTGGGTCAG 60.509 66.667 0.00 0.00 0.00 3.51
3934 4571 3.381136 CAAATGGGGTGGTGCGGG 61.381 66.667 0.00 0.00 0.00 6.13
3935 4572 2.153547 GAACAAATGGGGTGGTGCGG 62.154 60.000 0.00 0.00 0.00 5.69
3936 4573 1.288752 GAACAAATGGGGTGGTGCG 59.711 57.895 0.00 0.00 0.00 5.34
3937 4574 1.671166 GGAACAAATGGGGTGGTGC 59.329 57.895 0.00 0.00 0.00 5.01
3938 4575 0.538516 TCGGAACAAATGGGGTGGTG 60.539 55.000 0.00 0.00 0.00 4.17
3939 4576 0.538746 GTCGGAACAAATGGGGTGGT 60.539 55.000 0.00 0.00 0.00 4.16
3940 4577 1.582610 CGTCGGAACAAATGGGGTGG 61.583 60.000 0.00 0.00 0.00 4.61
3941 4578 0.604243 TCGTCGGAACAAATGGGGTG 60.604 55.000 0.00 0.00 0.00 4.61
3942 4579 0.604511 GTCGTCGGAACAAATGGGGT 60.605 55.000 0.00 0.00 0.00 4.95
3943 4580 1.303091 GGTCGTCGGAACAAATGGGG 61.303 60.000 0.00 0.00 0.00 4.96
3944 4581 0.604243 TGGTCGTCGGAACAAATGGG 60.604 55.000 0.00 0.00 36.80 4.00
3945 4582 1.448985 ATGGTCGTCGGAACAAATGG 58.551 50.000 0.00 0.00 44.54 3.16
3946 4583 2.159572 GGAATGGTCGTCGGAACAAATG 60.160 50.000 0.00 0.00 44.54 2.32
3947 4584 2.081462 GGAATGGTCGTCGGAACAAAT 58.919 47.619 0.00 0.00 44.54 2.32
3948 4585 1.515081 GGAATGGTCGTCGGAACAAA 58.485 50.000 0.00 0.00 44.54 2.83
3949 4586 0.668096 CGGAATGGTCGTCGGAACAA 60.668 55.000 0.00 0.00 44.54 2.83
3950 4587 1.080366 CGGAATGGTCGTCGGAACA 60.080 57.895 0.00 0.00 45.66 3.18
3951 4588 1.808390 CCGGAATGGTCGTCGGAAC 60.808 63.158 0.00 0.00 44.69 3.62
3952 4589 2.574929 CCGGAATGGTCGTCGGAA 59.425 61.111 0.00 0.00 44.69 4.30
3953 4590 4.137872 GCCGGAATGGTCGTCGGA 62.138 66.667 5.05 0.00 44.69 4.55
3956 4593 4.814294 AGCGCCGGAATGGTCGTC 62.814 66.667 5.05 0.00 41.21 4.20
3957 4594 3.894547 AAAGCGCCGGAATGGTCGT 62.895 57.895 5.05 0.00 41.21 4.34
3958 4595 3.095898 GAAAGCGCCGGAATGGTCG 62.096 63.158 5.05 0.00 41.21 4.79
3959 4596 2.761195 GGAAAGCGCCGGAATGGTC 61.761 63.158 5.05 0.00 41.21 4.02
3960 4597 2.750237 GGAAAGCGCCGGAATGGT 60.750 61.111 5.05 0.00 41.21 3.55
3961 4598 3.518068 GGGAAAGCGCCGGAATGG 61.518 66.667 5.05 0.00 42.50 3.16
3962 4599 3.876198 CGGGAAAGCGCCGGAATG 61.876 66.667 5.05 0.00 0.00 2.67
3968 4605 3.173167 TATAGGCCGGGAAAGCGCC 62.173 63.158 2.29 0.00 43.35 6.53
3969 4606 1.959738 GTATAGGCCGGGAAAGCGC 60.960 63.158 2.18 0.00 0.00 5.92
3970 4607 1.301479 GGTATAGGCCGGGAAAGCG 60.301 63.158 2.18 0.00 0.00 4.68
3971 4608 1.072678 GGGTATAGGCCGGGAAAGC 59.927 63.158 2.18 0.00 0.00 3.51
3972 4609 0.108019 GTGGGTATAGGCCGGGAAAG 59.892 60.000 2.18 0.00 0.00 2.62
3973 4610 1.688269 CGTGGGTATAGGCCGGGAAA 61.688 60.000 2.18 0.00 0.00 3.13
3974 4611 2.135581 CGTGGGTATAGGCCGGGAA 61.136 63.158 2.18 0.00 0.00 3.97
3975 4612 2.522436 CGTGGGTATAGGCCGGGA 60.522 66.667 2.18 0.00 0.00 5.14
3976 4613 4.309950 GCGTGGGTATAGGCCGGG 62.310 72.222 2.18 0.00 0.00 5.73
3977 4614 3.515316 CTGCGTGGGTATAGGCCGG 62.515 68.421 0.00 0.00 0.00 6.13
3978 4615 2.029073 CTGCGTGGGTATAGGCCG 59.971 66.667 0.00 0.00 0.00 6.13
3979 4616 2.280865 GCTGCGTGGGTATAGGCC 60.281 66.667 0.00 0.00 0.00 5.19
3980 4617 1.595382 CAGCTGCGTGGGTATAGGC 60.595 63.158 0.00 0.00 0.00 3.93
3981 4618 1.595382 GCAGCTGCGTGGGTATAGG 60.595 63.158 25.23 0.00 0.00 2.57
3982 4619 1.595382 GGCAGCTGCGTGGGTATAG 60.595 63.158 31.19 0.00 43.26 1.31
3983 4620 2.504032 GGCAGCTGCGTGGGTATA 59.496 61.111 31.19 0.00 43.26 1.47
3984 4621 4.838152 CGGCAGCTGCGTGGGTAT 62.838 66.667 31.19 0.00 43.26 2.73
3995 4632 4.847444 GGAGGAGGAAGCGGCAGC 62.847 72.222 0.00 0.00 45.58 5.25
3996 4633 4.168291 GGGAGGAGGAAGCGGCAG 62.168 72.222 1.45 0.00 0.00 4.85
3997 4634 4.722535 AGGGAGGAGGAAGCGGCA 62.723 66.667 1.45 0.00 0.00 5.69
3998 4635 3.855853 GAGGGAGGAGGAAGCGGC 61.856 72.222 0.00 0.00 0.00 6.53
3999 4636 3.157949 GGAGGGAGGAGGAAGCGG 61.158 72.222 0.00 0.00 0.00 5.52
4000 4637 2.364317 TGGAGGGAGGAGGAAGCG 60.364 66.667 0.00 0.00 0.00 4.68
4001 4638 1.306568 ACTGGAGGGAGGAGGAAGC 60.307 63.158 0.00 0.00 0.00 3.86
4002 4639 1.040339 CGACTGGAGGGAGGAGGAAG 61.040 65.000 0.00 0.00 0.00 3.46
4003 4640 1.000486 CGACTGGAGGGAGGAGGAA 60.000 63.158 0.00 0.00 0.00 3.36
4004 4641 2.684104 CGACTGGAGGGAGGAGGA 59.316 66.667 0.00 0.00 0.00 3.71
4005 4642 3.151022 GCGACTGGAGGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
4006 4643 3.151022 GGCGACTGGAGGGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
4009 4646 3.827898 GACGGCGACTGGAGGGAG 61.828 72.222 16.62 0.00 0.00 4.30
4033 4670 4.520846 GAAGGAATGGCACGCGCG 62.521 66.667 30.96 30.96 39.92 6.86
4034 4671 4.520846 CGAAGGAATGGCACGCGC 62.521 66.667 5.73 0.00 37.44 6.86
4035 4672 2.813474 TCGAAGGAATGGCACGCG 60.813 61.111 3.53 3.53 0.00 6.01
4036 4673 2.785258 GTCGAAGGAATGGCACGC 59.215 61.111 0.00 0.00 0.00 5.34
4037 4674 1.011968 TTCGTCGAAGGAATGGCACG 61.012 55.000 2.90 0.00 0.00 5.34
4038 4675 0.442699 GTTCGTCGAAGGAATGGCAC 59.557 55.000 8.18 0.00 0.00 5.01
4039 4676 0.034198 TGTTCGTCGAAGGAATGGCA 59.966 50.000 8.18 0.00 0.00 4.92
4040 4677 1.136057 GTTGTTCGTCGAAGGAATGGC 60.136 52.381 8.18 0.00 0.00 4.40
4041 4678 1.126113 CGTTGTTCGTCGAAGGAATGG 59.874 52.381 8.18 0.00 34.52 3.16
4042 4679 1.461888 GCGTTGTTCGTCGAAGGAATG 60.462 52.381 8.18 10.55 42.13 2.67
4043 4680 0.788391 GCGTTGTTCGTCGAAGGAAT 59.212 50.000 8.18 0.00 42.13 3.01
4044 4681 1.216941 GGCGTTGTTCGTCGAAGGAA 61.217 55.000 8.18 1.56 42.13 3.36
4045 4682 1.662446 GGCGTTGTTCGTCGAAGGA 60.662 57.895 8.18 0.00 42.13 3.36
4046 4683 2.851104 GGCGTTGTTCGTCGAAGG 59.149 61.111 8.18 0.00 42.13 3.46
4051 4688 2.654912 CGGTCAGGCGTTGTTCGTC 61.655 63.158 0.00 0.00 45.26 4.20
4052 4689 2.660552 CGGTCAGGCGTTGTTCGT 60.661 61.111 0.00 0.00 42.13 3.85
4053 4690 4.072088 GCGGTCAGGCGTTGTTCG 62.072 66.667 0.00 0.00 43.12 3.95
4054 4691 2.665185 AGCGGTCAGGCGTTGTTC 60.665 61.111 0.00 0.00 38.18 3.18
4055 4692 2.665185 GAGCGGTCAGGCGTTGTT 60.665 61.111 10.30 0.00 38.18 2.83
4056 4693 3.923864 TGAGCGGTCAGGCGTTGT 61.924 61.111 14.39 0.00 38.18 3.32
4057 4694 2.486636 TAGTGAGCGGTCAGGCGTTG 62.487 60.000 19.24 0.00 38.18 4.10
4058 4695 2.273179 TAGTGAGCGGTCAGGCGTT 61.273 57.895 19.24 4.30 38.18 4.84
4059 4696 2.675423 TAGTGAGCGGTCAGGCGT 60.675 61.111 19.24 5.77 38.18 5.68
4060 4697 2.202623 GTAGTGAGCGGTCAGGCG 60.203 66.667 19.24 0.00 38.18 5.52
4061 4698 2.184579 GGTAGTGAGCGGTCAGGC 59.815 66.667 19.24 7.38 31.53 4.85
4062 4699 2.490217 CGGTAGTGAGCGGTCAGG 59.510 66.667 19.24 1.43 42.86 3.86
4063 4700 2.202623 GCGGTAGTGAGCGGTCAG 60.203 66.667 19.24 7.01 46.62 3.51
4067 4704 4.554363 CCGAGCGGTAGTGAGCGG 62.554 72.222 0.00 0.00 46.62 5.52
4083 4720 3.670377 GAACACCTTGTGGGCGCC 61.670 66.667 21.18 21.18 37.94 6.53
4084 4721 4.025401 CGAACACCTTGTGGGCGC 62.025 66.667 0.00 0.00 37.94 6.53
4085 4722 2.280524 TCGAACACCTTGTGGGCG 60.281 61.111 0.00 2.47 37.94 6.13
4086 4723 1.098712 TTGTCGAACACCTTGTGGGC 61.099 55.000 0.00 0.00 37.94 5.36
4087 4724 1.384525 TTTGTCGAACACCTTGTGGG 58.615 50.000 0.00 0.00 37.94 4.61
4088 4725 2.789779 CGTTTTGTCGAACACCTTGTGG 60.790 50.000 0.00 0.00 37.94 4.17
4089 4726 2.436670 CGTTTTGTCGAACACCTTGTG 58.563 47.619 0.00 0.00 39.75 3.33
4090 4727 1.202098 GCGTTTTGTCGAACACCTTGT 60.202 47.619 0.00 0.00 0.00 3.16
4091 4728 1.063469 AGCGTTTTGTCGAACACCTTG 59.937 47.619 0.00 0.00 0.00 3.61
4092 4729 1.375551 AGCGTTTTGTCGAACACCTT 58.624 45.000 0.00 0.00 0.00 3.50
4093 4730 1.063469 CAAGCGTTTTGTCGAACACCT 59.937 47.619 0.00 0.00 0.00 4.00
4094 4731 1.462791 CAAGCGTTTTGTCGAACACC 58.537 50.000 0.00 0.00 0.00 4.16
4095 4732 0.837605 GCAAGCGTTTTGTCGAACAC 59.162 50.000 0.00 0.00 0.00 3.32
4096 4733 0.448197 TGCAAGCGTTTTGTCGAACA 59.552 45.000 0.00 0.00 0.00 3.18
4097 4734 1.512771 CTTGCAAGCGTTTTGTCGAAC 59.487 47.619 14.65 0.00 0.00 3.95
4098 4735 1.532921 CCTTGCAAGCGTTTTGTCGAA 60.533 47.619 21.43 0.00 0.00 3.71
4099 4736 0.028770 CCTTGCAAGCGTTTTGTCGA 59.971 50.000 21.43 0.00 0.00 4.20
4100 4737 0.248458 ACCTTGCAAGCGTTTTGTCG 60.248 50.000 21.43 6.48 0.00 4.35
4101 4738 2.766970 TACCTTGCAAGCGTTTTGTC 57.233 45.000 21.43 0.00 0.00 3.18
4102 4739 2.360801 ACATACCTTGCAAGCGTTTTGT 59.639 40.909 21.43 19.93 0.00 2.83
4103 4740 3.011949 ACATACCTTGCAAGCGTTTTG 57.988 42.857 21.43 19.42 0.00 2.44
4104 4741 5.160641 CAATACATACCTTGCAAGCGTTTT 58.839 37.500 21.43 12.16 0.00 2.43
4105 4742 4.732784 CAATACATACCTTGCAAGCGTTT 58.267 39.130 21.43 12.09 0.00 3.60
4106 4743 3.427503 GCAATACATACCTTGCAAGCGTT 60.428 43.478 21.43 9.57 45.50 4.84
4107 4744 2.097466 GCAATACATACCTTGCAAGCGT 59.903 45.455 21.43 20.49 45.50 5.07
4108 4745 2.719798 GCAATACATACCTTGCAAGCG 58.280 47.619 21.43 15.97 45.50 4.68
4113 4750 5.567138 AGTTGAAGCAATACATACCTTGC 57.433 39.130 0.00 0.00 46.32 4.01
4114 4751 7.023575 GTCAAGTTGAAGCAATACATACCTTG 58.976 38.462 7.25 0.00 0.00 3.61
4115 4752 6.714810 TGTCAAGTTGAAGCAATACATACCTT 59.285 34.615 7.25 0.00 0.00 3.50
4116 4753 6.237901 TGTCAAGTTGAAGCAATACATACCT 58.762 36.000 7.25 0.00 0.00 3.08
4117 4754 6.494893 TGTCAAGTTGAAGCAATACATACC 57.505 37.500 7.25 0.00 0.00 2.73
4118 4755 8.970691 AAATGTCAAGTTGAAGCAATACATAC 57.029 30.769 7.25 0.00 0.00 2.39
4119 4756 9.979578 AAAAATGTCAAGTTGAAGCAATACATA 57.020 25.926 7.25 0.00 0.00 2.29
4120 4757 8.891671 AAAAATGTCAAGTTGAAGCAATACAT 57.108 26.923 7.25 2.78 0.00 2.29
4142 4779 7.281774 ACAACATGCACCAAATTCATGTAAAAA 59.718 29.630 9.40 0.00 46.92 1.94
4143 4780 6.765036 ACAACATGCACCAAATTCATGTAAAA 59.235 30.769 9.40 0.00 46.92 1.52
4144 4781 6.286758 ACAACATGCACCAAATTCATGTAAA 58.713 32.000 9.40 0.00 46.92 2.01
4145 4782 5.851720 ACAACATGCACCAAATTCATGTAA 58.148 33.333 9.40 0.00 46.92 2.41
4146 4783 5.465532 ACAACATGCACCAAATTCATGTA 57.534 34.783 9.40 0.00 46.92 2.29
4148 4785 5.007823 ACAAACAACATGCACCAAATTCATG 59.992 36.000 0.00 3.25 42.27 3.07
4149 4786 5.124645 ACAAACAACATGCACCAAATTCAT 58.875 33.333 0.00 0.00 0.00 2.57
4150 4787 4.511527 ACAAACAACATGCACCAAATTCA 58.488 34.783 0.00 0.00 0.00 2.57
4151 4788 5.752955 ACTACAAACAACATGCACCAAATTC 59.247 36.000 0.00 0.00 0.00 2.17
4152 4789 5.669477 ACTACAAACAACATGCACCAAATT 58.331 33.333 0.00 0.00 0.00 1.82
4153 4790 5.275067 ACTACAAACAACATGCACCAAAT 57.725 34.783 0.00 0.00 0.00 2.32
4154 4791 4.727507 ACTACAAACAACATGCACCAAA 57.272 36.364 0.00 0.00 0.00 3.28
4155 4792 4.727507 AACTACAAACAACATGCACCAA 57.272 36.364 0.00 0.00 0.00 3.67
4156 4793 4.727507 AAACTACAAACAACATGCACCA 57.272 36.364 0.00 0.00 0.00 4.17



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.