Multiple sequence alignment - TraesCS6A01G247500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G247500 chr6A 100.000 3803 0 0 1 3803 459671545 459675347 0.000000e+00 7023.0
1 TraesCS6A01G247500 chr6A 100.000 308 0 0 4175 4482 459675719 459676026 1.810000e-158 569.0
2 TraesCS6A01G247500 chr2A 94.685 715 31 3 1 714 38618859 38618151 0.000000e+00 1103.0
3 TraesCS6A01G247500 chr2A 92.795 694 39 8 1 689 288986027 288986714 0.000000e+00 994.0
4 TraesCS6A01G247500 chr2A 87.907 215 19 4 714 926 59937186 59936977 3.460000e-61 246.0
5 TraesCS6A01G247500 chr2A 93.571 140 9 0 3355 3494 498840794 498840655 4.540000e-50 209.0
6 TraesCS6A01G247500 chr2A 93.277 119 8 0 2994 3112 348616482 348616600 4.610000e-40 176.0
7 TraesCS6A01G247500 chr3A 93.472 720 36 7 1 715 707729021 707729734 0.000000e+00 1059.0
8 TraesCS6A01G247500 chr3A 93.463 719 37 7 1 715 707758839 707759551 0.000000e+00 1059.0
9 TraesCS6A01G247500 chr3A 93.324 719 38 7 1 715 707790196 707790908 0.000000e+00 1053.0
10 TraesCS6A01G247500 chr3A 93.324 719 38 7 1 715 707819609 707820321 0.000000e+00 1053.0
11 TraesCS6A01G247500 chr3A 93.185 719 37 8 1 715 707661497 707662207 0.000000e+00 1046.0
12 TraesCS6A01G247500 chr3A 93.166 717 37 9 1 715 707696032 707696738 0.000000e+00 1042.0
13 TraesCS6A01G247500 chr3A 82.857 175 22 1 2996 3162 283294813 283294639 2.790000e-32 150.0
14 TraesCS6A01G247500 chr6D 91.523 755 55 7 1684 2434 322194756 322195505 0.000000e+00 1031.0
15 TraesCS6A01G247500 chr6D 92.007 563 25 8 1125 1684 322194167 322194712 0.000000e+00 773.0
16 TraesCS6A01G247500 chr6D 83.333 312 45 6 3161 3466 276911861 276911551 9.490000e-72 281.0
17 TraesCS6A01G247500 chr6D 92.268 194 15 0 940 1133 322030432 322030625 4.420000e-70 276.0
18 TraesCS6A01G247500 chr6D 93.277 119 8 0 2994 3112 56211015 56210897 4.610000e-40 176.0
19 TraesCS6A01G247500 chr6D 80.741 135 13 7 3500 3632 43953555 43953678 4.770000e-15 93.5
20 TraesCS6A01G247500 chr7A 95.107 654 25 1 3157 3803 49367319 49366666 0.000000e+00 1024.0
21 TraesCS6A01G247500 chr7A 91.011 534 40 3 2701 3234 577613943 577614468 0.000000e+00 713.0
22 TraesCS6A01G247500 chr7A 93.991 466 22 4 2702 3163 49368802 49368339 0.000000e+00 701.0
23 TraesCS6A01G247500 chr7A 91.391 453 18 8 3351 3803 577614469 577614900 6.420000e-168 601.0
24 TraesCS6A01G247500 chr7A 95.820 311 10 1 4175 4482 49366570 49366260 2.410000e-137 499.0
25 TraesCS6A01G247500 chr7A 94.805 308 16 0 4175 4482 577614994 577615301 8.720000e-132 481.0
26 TraesCS6A01G247500 chr7A 87.558 217 18 6 714 926 398920624 398920835 4.480000e-60 243.0
27 TraesCS6A01G247500 chr7A 87.442 215 19 5 714 926 283148736 283148944 1.610000e-59 241.0
28 TraesCS6A01G247500 chr7A 83.983 231 22 7 2711 2937 634878443 634878662 1.630000e-49 207.0
29 TraesCS6A01G247500 chr5B 90.934 728 51 7 1 718 703308269 703307547 0.000000e+00 965.0
30 TraesCS6A01G247500 chr5B 89.950 199 17 3 714 910 697520375 697520572 2.070000e-63 254.0
31 TraesCS6A01G247500 chr5B 87.963 216 16 7 714 926 6538471 6538679 3.460000e-61 246.0
32 TraesCS6A01G247500 chr5B 87.907 215 14 6 714 926 548679871 548679667 4.480000e-60 243.0
33 TraesCS6A01G247500 chr6B 92.672 655 29 10 1037 1684 501130964 501130322 0.000000e+00 926.0
34 TraesCS6A01G247500 chr6B 90.424 543 41 6 2693 3234 574502793 574503325 0.000000e+00 704.0
35 TraesCS6A01G247500 chr6B 90.805 522 30 8 2732 3253 91151192 91150689 0.000000e+00 682.0
36 TraesCS6A01G247500 chr6B 90.949 453 20 8 3351 3803 574503326 574503757 1.390000e-164 590.0
37 TraesCS6A01G247500 chr6B 86.032 494 48 13 1752 2230 501130099 501129612 1.110000e-140 510.0
38 TraesCS6A01G247500 chr6B 94.481 308 17 0 4175 4482 574503852 574504159 4.060000e-130 475.0
39 TraesCS6A01G247500 chr6B 93.182 308 21 0 4175 4482 91146042 91145735 1.900000e-123 453.0
40 TraesCS6A01G247500 chr6B 93.182 308 21 0 4175 4482 91150660 91150353 1.900000e-123 453.0
41 TraesCS6A01G247500 chr6B 92.607 257 15 3 2286 2538 501129500 501129244 2.550000e-97 366.0
42 TraesCS6A01G247500 chr6B 89.354 263 15 5 2732 2993 668518017 668517767 7.230000e-83 318.0
43 TraesCS6A01G247500 chr6B 88.837 215 16 5 714 926 487204038 487203830 1.600000e-64 257.0
44 TraesCS6A01G247500 chr6B 87.442 215 18 6 714 926 487207287 487207080 5.790000e-59 239.0
45 TraesCS6A01G247500 chrUn 90.676 547 33 8 2732 3278 77418008 77418536 0.000000e+00 712.0
46 TraesCS6A01G247500 chrUn 94.949 396 20 0 3349 3744 77418645 77419040 4.920000e-174 621.0
47 TraesCS6A01G247500 chrUn 93.182 308 21 0 4175 4482 77419225 77419532 1.900000e-123 453.0
48 TraesCS6A01G247500 chrUn 94.764 191 9 1 3127 3316 77418459 77418649 3.390000e-76 296.0
49 TraesCS6A01G247500 chrUn 92.982 57 3 1 3320 3376 375150235 375150180 1.030000e-11 82.4
50 TraesCS6A01G247500 chr1A 90.435 460 33 5 2703 3159 474165296 474165747 2.980000e-166 595.0
51 TraesCS6A01G247500 chr1A 90.949 453 20 8 3351 3803 474165748 474166179 1.390000e-164 590.0
52 TraesCS6A01G247500 chr1A 94.805 308 16 0 4175 4482 474166273 474166580 8.720000e-132 481.0
53 TraesCS6A01G247500 chr3B 87.458 295 23 7 2701 2993 39527640 39527922 1.200000e-85 327.0
54 TraesCS6A01G247500 chr7D 89.394 198 17 4 714 910 530898160 530898354 3.460000e-61 246.0
55 TraesCS6A01G247500 chr7D 85.165 182 16 3 3201 3374 25796043 25796221 4.610000e-40 176.0
56 TraesCS6A01G247500 chr5A 77.953 381 43 22 2994 3374 211113898 211113559 2.730000e-47 200.0
57 TraesCS6A01G247500 chr3D 86.339 183 17 4 2996 3170 61039529 61039347 4.580000e-45 193.0
58 TraesCS6A01G247500 chr7B 77.436 390 36 27 2994 3374 535630778 535630432 7.660000e-43 185.0
59 TraesCS6A01G247500 chr4A 93.277 119 8 0 2994 3112 102765680 102765798 4.610000e-40 176.0
60 TraesCS6A01G247500 chr5D 83.019 159 17 5 3206 3356 468157077 468156921 7.820000e-28 135.0
61 TraesCS6A01G247500 chr2B 79.439 214 22 18 2732 2938 564974255 564974453 1.010000e-26 132.0
62 TraesCS6A01G247500 chr2B 86.325 117 12 4 2696 2811 765034382 765034495 1.690000e-24 124.0
63 TraesCS6A01G247500 chr2B 98.485 66 1 0 2928 2993 765034954 765035019 2.830000e-22 117.0
64 TraesCS6A01G247500 chr1B 84.545 110 13 3 2693 2800 646746058 646746165 6.130000e-19 106.0
65 TraesCS6A01G247500 chr4D 80.741 135 13 7 3500 3632 105230063 105230186 4.770000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G247500 chr6A 459671545 459676026 4481 False 3796.000000 7023 100.000000 1 4482 2 chr6A.!!$F1 4481
1 TraesCS6A01G247500 chr2A 38618151 38618859 708 True 1103.000000 1103 94.685000 1 714 1 chr2A.!!$R1 713
2 TraesCS6A01G247500 chr2A 288986027 288986714 687 False 994.000000 994 92.795000 1 689 1 chr2A.!!$F1 688
3 TraesCS6A01G247500 chr3A 707729021 707729734 713 False 1059.000000 1059 93.472000 1 715 1 chr3A.!!$F3 714
4 TraesCS6A01G247500 chr3A 707758839 707759551 712 False 1059.000000 1059 93.463000 1 715 1 chr3A.!!$F4 714
5 TraesCS6A01G247500 chr3A 707790196 707790908 712 False 1053.000000 1053 93.324000 1 715 1 chr3A.!!$F5 714
6 TraesCS6A01G247500 chr3A 707819609 707820321 712 False 1053.000000 1053 93.324000 1 715 1 chr3A.!!$F6 714
7 TraesCS6A01G247500 chr3A 707661497 707662207 710 False 1046.000000 1046 93.185000 1 715 1 chr3A.!!$F1 714
8 TraesCS6A01G247500 chr3A 707696032 707696738 706 False 1042.000000 1042 93.166000 1 715 1 chr3A.!!$F2 714
9 TraesCS6A01G247500 chr6D 322194167 322195505 1338 False 902.000000 1031 91.765000 1125 2434 2 chr6D.!!$F3 1309
10 TraesCS6A01G247500 chr7A 49366260 49368802 2542 True 741.333333 1024 94.972667 2702 4482 3 chr7A.!!$R1 1780
11 TraesCS6A01G247500 chr7A 577613943 577615301 1358 False 598.333333 713 92.402333 2701 4482 3 chr7A.!!$F4 1781
12 TraesCS6A01G247500 chr5B 703307547 703308269 722 True 965.000000 965 90.934000 1 718 1 chr5B.!!$R2 717
13 TraesCS6A01G247500 chr6B 501129244 501130964 1720 True 600.666667 926 90.437000 1037 2538 3 chr6B.!!$R5 1501
14 TraesCS6A01G247500 chr6B 574502793 574504159 1366 False 589.666667 704 91.951333 2693 4482 3 chr6B.!!$F1 1789
15 TraesCS6A01G247500 chr6B 91150353 91151192 839 True 567.500000 682 91.993500 2732 4482 2 chr6B.!!$R3 1750
16 TraesCS6A01G247500 chr6B 487203830 487207287 3457 True 248.000000 257 88.139500 714 926 2 chr6B.!!$R4 212
17 TraesCS6A01G247500 chrUn 77418008 77419532 1524 False 520.500000 712 93.392750 2732 4482 4 chrUn.!!$F1 1750
18 TraesCS6A01G247500 chr1A 474165296 474166580 1284 False 555.333333 595 92.063000 2703 4482 3 chr1A.!!$F1 1779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 4191 0.105039 GAGGGAGCACCGGATACTTG 59.895 60.0 9.46 0.0 46.96 3.16 F
931 4196 0.252197 AGCACCGGATACTTGAACCC 59.748 55.0 9.46 0.0 0.00 4.11 F
2443 5978 0.104120 TGATCGTAGGAATGTGCCGG 59.896 55.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 5903 0.320374 TGAAGAGTACCCCAACTGCG 59.680 55.000 0.00 0.0 0.00 5.18 R
2598 6135 0.472471 TAATGTGGGATTCTCCGGCC 59.528 55.000 0.00 0.0 37.43 6.13 R
3642 8294 1.612199 GCATCCGAGGTTGGGTAACAA 60.612 52.381 2.77 0.0 38.58 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 143 2.948979 CACTGGTGGTAGCAAAAACAGA 59.051 45.455 18.16 0.00 0.00 3.41
140 144 3.003689 CACTGGTGGTAGCAAAAACAGAG 59.996 47.826 18.16 10.35 0.00 3.35
171 175 5.940192 TGTAGCAAAAATGTCGATGTTCT 57.060 34.783 0.00 0.00 0.00 3.01
191 195 0.827925 AGCAGGACGAACTCTGGTGA 60.828 55.000 0.00 0.00 39.81 4.02
248 252 0.744281 CGGTTCCAGCAAACTTGGTT 59.256 50.000 0.00 0.00 36.65 3.67
276 280 0.984230 CAACTTCCTGTGAGCCCCTA 59.016 55.000 0.00 0.00 0.00 3.53
497 502 3.553095 GAAAGCAGCAGGGGGTCGT 62.553 63.158 0.00 0.00 0.00 4.34
526 531 2.126618 CGGCGAGTTCGTACTGCA 60.127 61.111 0.00 0.00 42.22 4.41
649 664 1.626654 CCTGTCTCGCGCGTGAAAAT 61.627 55.000 32.80 0.00 0.00 1.82
652 667 1.265568 GTCTCGCGCGTGAAAATAGA 58.734 50.000 32.80 21.77 0.00 1.98
718 733 2.387185 GCCCGAAACGTTTACCTTTTG 58.613 47.619 14.65 0.00 0.00 2.44
719 734 2.223548 GCCCGAAACGTTTACCTTTTGT 60.224 45.455 14.65 0.00 0.00 2.83
720 735 3.620761 CCCGAAACGTTTACCTTTTGTC 58.379 45.455 14.65 0.00 0.00 3.18
721 736 3.313249 CCCGAAACGTTTACCTTTTGTCT 59.687 43.478 14.65 0.00 0.00 3.41
722 737 4.511082 CCCGAAACGTTTACCTTTTGTCTA 59.489 41.667 14.65 0.00 0.00 2.59
802 817 5.903010 AGTTTGGACCTGAAATTTTTAGGGT 59.097 36.000 20.45 11.48 35.89 4.34
808 4073 7.149973 GGACCTGAAATTTTTAGGGTTTGTAC 58.850 38.462 20.45 0.67 35.89 2.90
816 4081 9.541143 AAATTTTTAGGGTTTGTACTCACATTG 57.459 29.630 0.00 0.00 33.76 2.82
892 4157 7.894376 TTTACTAACATTTGAAGTACGGGAG 57.106 36.000 0.00 0.00 0.00 4.30
894 4159 6.594788 ACTAACATTTGAAGTACGGGAGTA 57.405 37.500 0.00 0.00 46.17 2.59
913 4178 3.978164 CCTAAGGCTGGGAGGGAG 58.022 66.667 1.01 0.00 0.00 4.30
914 4179 2.447714 CCTAAGGCTGGGAGGGAGC 61.448 68.421 1.01 0.00 35.57 4.70
915 4180 1.690633 CTAAGGCTGGGAGGGAGCA 60.691 63.158 0.00 0.00 38.27 4.26
916 4181 1.977293 CTAAGGCTGGGAGGGAGCAC 61.977 65.000 0.00 0.00 38.27 4.40
921 4186 4.414956 TGGGAGGGAGCACCGGAT 62.415 66.667 9.46 0.00 46.96 4.18
922 4187 2.122989 GGGAGGGAGCACCGGATA 60.123 66.667 9.46 0.00 46.96 2.59
923 4188 2.508751 GGGAGGGAGCACCGGATAC 61.509 68.421 9.46 0.00 46.96 2.24
924 4189 1.457831 GGAGGGAGCACCGGATACT 60.458 63.158 9.46 0.83 46.96 2.12
925 4190 1.049289 GGAGGGAGCACCGGATACTT 61.049 60.000 9.46 0.00 46.96 2.24
926 4191 0.105039 GAGGGAGCACCGGATACTTG 59.895 60.000 9.46 0.00 46.96 3.16
927 4192 0.325296 AGGGAGCACCGGATACTTGA 60.325 55.000 9.46 0.00 46.96 3.02
928 4193 0.539986 GGGAGCACCGGATACTTGAA 59.460 55.000 9.46 0.00 36.97 2.69
929 4194 1.653151 GGAGCACCGGATACTTGAAC 58.347 55.000 9.46 0.00 0.00 3.18
930 4195 1.653151 GAGCACCGGATACTTGAACC 58.347 55.000 9.46 0.00 0.00 3.62
931 4196 0.252197 AGCACCGGATACTTGAACCC 59.748 55.000 9.46 0.00 0.00 4.11
932 4197 0.746923 GCACCGGATACTTGAACCCC 60.747 60.000 9.46 0.00 0.00 4.95
933 4198 0.461339 CACCGGATACTTGAACCCCG 60.461 60.000 9.46 0.00 39.85 5.73
934 4199 1.523032 CCGGATACTTGAACCCCGC 60.523 63.158 0.00 0.00 38.92 6.13
935 4200 1.520666 CGGATACTTGAACCCCGCT 59.479 57.895 0.00 0.00 33.47 5.52
936 4201 0.810031 CGGATACTTGAACCCCGCTG 60.810 60.000 0.00 0.00 33.47 5.18
937 4202 0.252197 GGATACTTGAACCCCGCTGT 59.748 55.000 0.00 0.00 0.00 4.40
938 4203 1.369625 GATACTTGAACCCCGCTGTG 58.630 55.000 0.00 0.00 0.00 3.66
939 4204 0.676782 ATACTTGAACCCCGCTGTGC 60.677 55.000 0.00 0.00 0.00 4.57
940 4205 2.741486 TACTTGAACCCCGCTGTGCC 62.741 60.000 0.00 0.00 0.00 5.01
941 4206 3.850098 CTTGAACCCCGCTGTGCCT 62.850 63.158 0.00 0.00 0.00 4.75
942 4207 4.641645 TGAACCCCGCTGTGCCTG 62.642 66.667 0.00 0.00 0.00 4.85
954 4219 3.249189 TGCCTGGAGGGGACACAC 61.249 66.667 0.00 0.00 35.18 3.82
955 4220 4.394712 GCCTGGAGGGGACACACG 62.395 72.222 0.00 0.00 35.18 4.49
956 4221 2.923035 CCTGGAGGGGACACACGT 60.923 66.667 0.00 0.00 0.00 4.49
957 4222 2.343758 CTGGAGGGGACACACGTG 59.656 66.667 15.48 15.48 0.00 4.49
958 4223 2.123208 TGGAGGGGACACACGTGA 60.123 61.111 25.01 0.00 0.00 4.35
959 4224 1.754380 CTGGAGGGGACACACGTGAA 61.754 60.000 25.01 0.00 0.00 3.18
960 4225 1.301479 GGAGGGGACACACGTGAAC 60.301 63.158 25.01 12.27 0.00 3.18
961 4226 1.301479 GAGGGGACACACGTGAACC 60.301 63.158 25.01 20.03 0.00 3.62
962 4227 2.281276 GGGGACACACGTGAACCC 60.281 66.667 27.60 27.60 43.72 4.11
963 4228 2.281276 GGGACACACGTGAACCCC 60.281 66.667 25.01 22.64 41.15 4.95
964 4229 2.663852 GGACACACGTGAACCCCG 60.664 66.667 25.01 5.49 0.00 5.73
965 4230 3.343421 GACACACGTGAACCCCGC 61.343 66.667 25.01 0.10 0.00 6.13
966 4231 3.802418 GACACACGTGAACCCCGCT 62.802 63.158 25.01 0.00 0.00 5.52
967 4232 3.345808 CACACGTGAACCCCGCTG 61.346 66.667 25.01 3.00 0.00 5.18
968 4233 3.857038 ACACGTGAACCCCGCTGT 61.857 61.111 25.01 0.00 0.00 4.40
969 4234 3.345808 CACGTGAACCCCGCTGTG 61.346 66.667 10.90 0.00 0.00 3.66
972 4237 4.643387 GTGAACCCCGCTGTGCCT 62.643 66.667 0.00 0.00 0.00 4.75
973 4238 4.641645 TGAACCCCGCTGTGCCTG 62.642 66.667 0.00 0.00 0.00 4.85
974 4239 4.643387 GAACCCCGCTGTGCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
975 4240 4.954970 AACCCCGCTGTGCCTGTG 62.955 66.667 0.00 0.00 0.00 3.66
998 4263 2.042537 AGAGCAGATCTCCGGCCA 60.043 61.111 2.24 0.00 42.90 5.36
999 4264 2.107953 GAGCAGATCTCCGGCCAC 59.892 66.667 2.24 0.00 36.60 5.01
1000 4265 2.685017 AGCAGATCTCCGGCCACA 60.685 61.111 2.24 0.00 36.60 4.17
1001 4266 2.037620 GAGCAGATCTCCGGCCACAT 62.038 60.000 2.24 0.00 36.60 3.21
1002 4267 1.890979 GCAGATCTCCGGCCACATG 60.891 63.158 2.24 0.00 0.00 3.21
1003 4268 1.227764 CAGATCTCCGGCCACATGG 60.228 63.158 2.24 0.00 38.53 3.66
1013 4278 3.685435 CCACATGGCCCACAAGAC 58.315 61.111 0.00 0.00 0.00 3.01
1014 4279 1.978617 CCACATGGCCCACAAGACC 60.979 63.158 0.00 0.00 0.00 3.85
1015 4280 2.034066 ACATGGCCCACAAGACCG 59.966 61.111 0.00 0.00 0.00 4.79
1016 4281 2.350895 CATGGCCCACAAGACCGA 59.649 61.111 0.00 0.00 0.00 4.69
1017 4282 1.746615 CATGGCCCACAAGACCGAG 60.747 63.158 0.00 0.00 0.00 4.63
1018 4283 2.224159 ATGGCCCACAAGACCGAGT 61.224 57.895 0.00 0.00 0.00 4.18
1019 4284 2.358737 GGCCCACAAGACCGAGTG 60.359 66.667 0.00 0.00 35.56 3.51
1023 4288 4.245054 CACAAGACCGAGTGGACG 57.755 61.111 0.00 0.00 39.21 4.79
1024 4289 1.362717 CACAAGACCGAGTGGACGT 59.637 57.895 0.00 0.00 39.21 4.34
1025 4290 0.663568 CACAAGACCGAGTGGACGTC 60.664 60.000 7.13 7.13 39.21 4.34
1026 4291 1.442184 CAAGACCGAGTGGACGTCG 60.442 63.158 9.92 0.00 39.21 5.12
1027 4292 3.264866 AAGACCGAGTGGACGTCGC 62.265 63.158 9.92 5.02 39.21 5.19
1028 4293 4.034258 GACCGAGTGGACGTCGCA 62.034 66.667 9.92 6.05 39.21 5.10
1029 4294 4.338539 ACCGAGTGGACGTCGCAC 62.339 66.667 22.14 22.14 39.21 5.34
1188 4454 2.629051 ACGTAGCAGGCAAACTATTCC 58.371 47.619 0.00 0.00 0.00 3.01
1518 4785 3.656045 CCCGCCCAACGTTGACAC 61.656 66.667 29.35 16.03 41.42 3.67
1596 4870 7.905031 GTTTCTACGTAGTATAAACGCATCT 57.095 36.000 21.53 0.00 45.27 2.90
1631 4905 6.716284 TGTGTTAGGATGTCATTTGACCATA 58.284 36.000 8.16 0.00 44.15 2.74
1638 4912 8.365060 AGGATGTCATTTGACCATAAAAATGA 57.635 30.769 8.16 6.70 45.74 2.57
1709 5027 7.770897 ACTATTCATGGACAGGAGTAAATGAAC 59.229 37.037 0.00 0.00 40.01 3.18
1711 5029 4.536090 TCATGGACAGGAGTAAATGAACCT 59.464 41.667 0.00 0.00 30.77 3.50
1717 5035 5.373812 CAGGAGTAAATGAACCTGGGTAT 57.626 43.478 0.00 0.00 44.04 2.73
1798 5231 3.942130 ACAATCTTTAGTTGCTTGGCC 57.058 42.857 0.00 0.00 0.00 5.36
1800 5233 2.562298 CAATCTTTAGTTGCTTGGCCCA 59.438 45.455 0.00 0.00 0.00 5.36
1807 5250 5.753721 TTAGTTGCTTGGCCCATTTAAAT 57.246 34.783 0.00 0.00 0.00 1.40
1808 5251 4.639078 AGTTGCTTGGCCCATTTAAATT 57.361 36.364 0.00 0.00 0.00 1.82
1809 5252 4.984295 AGTTGCTTGGCCCATTTAAATTT 58.016 34.783 0.00 0.00 0.00 1.82
1810 5253 5.384336 AGTTGCTTGGCCCATTTAAATTTT 58.616 33.333 0.00 0.00 0.00 1.82
1841 5285 5.068215 TCCAAGACCCTTGGATGTAAAAA 57.932 39.130 20.88 0.86 43.17 1.94
1883 5327 8.121708 TGTTTTTGCATGAAAATTAAGCAACTC 58.878 29.630 0.00 0.00 43.94 3.01
1889 5334 6.602179 CATGAAAATTAAGCAACTCGACTCA 58.398 36.000 0.00 0.00 0.00 3.41
2024 5471 2.345760 GGGAGACGACGTGCCCTTA 61.346 63.158 22.21 0.00 37.59 2.69
2040 5487 1.674817 CCTTATGGACACGTGGTGACC 60.675 57.143 21.57 16.75 45.63 4.02
2082 5529 2.104170 CCTAGCCTCTCGGAGAAGTTT 58.896 52.381 9.32 0.00 34.09 2.66
2092 5539 6.205270 CCTCTCGGAGAAGTTTATAGAGGTAC 59.795 46.154 9.32 0.00 42.35 3.34
2131 5578 1.598130 GGGTGAGTGCAAGTTCGCT 60.598 57.895 0.00 0.00 0.00 4.93
2195 5642 2.418976 GGCCGAAATACAACTCAAGACC 59.581 50.000 0.00 0.00 0.00 3.85
2201 5648 5.062934 CGAAATACAACTCAAGACCGCATAA 59.937 40.000 0.00 0.00 0.00 1.90
2218 5665 6.073819 ACCGCATAATTTGTTCTTTCTTTTGC 60.074 34.615 0.00 0.00 0.00 3.68
2226 5759 3.242936 TGTTCTTTCTTTTGCTACGTGCC 60.243 43.478 0.00 0.00 42.00 5.01
2299 5832 2.771943 AGAGACCTCTTTTGGTGACACA 59.228 45.455 8.08 0.00 41.00 3.72
2389 5922 0.320374 CGCAGTTGGGGTACTCTTCA 59.680 55.000 0.00 0.00 0.00 3.02
2441 5976 2.351726 GTGTTGATCGTAGGAATGTGCC 59.648 50.000 0.00 0.00 0.00 5.01
2442 5977 1.593006 GTTGATCGTAGGAATGTGCCG 59.407 52.381 0.00 0.00 0.00 5.69
2443 5978 0.104120 TGATCGTAGGAATGTGCCGG 59.896 55.000 0.00 0.00 0.00 6.13
2444 5979 1.222115 GATCGTAGGAATGTGCCGGC 61.222 60.000 22.73 22.73 0.00 6.13
2451 5988 3.395470 GAATGTGCCGGCGCGATTT 62.395 57.895 32.97 25.30 38.08 2.17
2477 6014 6.951256 TTAGCGACATAATATGAGATGCAC 57.049 37.500 7.33 0.00 0.00 4.57
2505 6042 5.964958 ATGGGTTGTAAATGTGAGAACTG 57.035 39.130 0.00 0.00 0.00 3.16
2516 6053 3.657634 TGTGAGAACTGAGAATGTGCTC 58.342 45.455 0.00 0.00 39.83 4.26
2520 6057 4.524328 TGAGAACTGAGAATGTGCTCACTA 59.476 41.667 0.82 0.00 43.12 2.74
2538 6075 4.141228 TCACTATACCGGGAGTCTGAGATT 60.141 45.833 6.32 0.00 0.00 2.40
2539 6076 4.216687 CACTATACCGGGAGTCTGAGATTC 59.783 50.000 6.32 0.00 0.00 2.52
2540 6077 1.676746 TACCGGGAGTCTGAGATTCG 58.323 55.000 6.32 0.00 0.00 3.34
2541 6078 1.066587 CCGGGAGTCTGAGATTCGC 59.933 63.158 11.22 11.22 0.00 4.70
2542 6079 1.667154 CCGGGAGTCTGAGATTCGCA 61.667 60.000 19.10 0.00 32.47 5.10
2543 6080 0.387202 CGGGAGTCTGAGATTCGCAT 59.613 55.000 19.10 0.00 32.47 4.73
2544 6081 1.202463 CGGGAGTCTGAGATTCGCATT 60.202 52.381 19.10 0.00 32.47 3.56
2545 6082 2.034685 CGGGAGTCTGAGATTCGCATTA 59.965 50.000 19.10 0.00 32.47 1.90
2546 6083 3.490933 CGGGAGTCTGAGATTCGCATTAA 60.491 47.826 19.10 0.00 32.47 1.40
2547 6084 4.636249 GGGAGTCTGAGATTCGCATTAAT 58.364 43.478 15.41 0.00 33.00 1.40
2548 6085 5.059833 GGGAGTCTGAGATTCGCATTAATT 58.940 41.667 15.41 0.00 33.00 1.40
2549 6086 5.529060 GGGAGTCTGAGATTCGCATTAATTT 59.471 40.000 15.41 0.00 33.00 1.82
2550 6087 6.425504 GGAGTCTGAGATTCGCATTAATTTG 58.574 40.000 0.00 0.00 0.00 2.32
2551 6088 6.258727 GGAGTCTGAGATTCGCATTAATTTGA 59.741 38.462 0.00 0.00 0.00 2.69
2552 6089 7.244166 AGTCTGAGATTCGCATTAATTTGAG 57.756 36.000 0.00 0.00 0.00 3.02
2553 6090 5.906285 GTCTGAGATTCGCATTAATTTGAGC 59.094 40.000 0.00 0.00 0.00 4.26
2554 6091 5.585844 TCTGAGATTCGCATTAATTTGAGCA 59.414 36.000 0.00 0.00 0.00 4.26
2555 6092 6.261603 TCTGAGATTCGCATTAATTTGAGCAT 59.738 34.615 0.00 0.00 0.00 3.79
2556 6093 6.203647 TGAGATTCGCATTAATTTGAGCATG 58.796 36.000 0.00 0.00 0.00 4.06
2557 6094 6.038492 TGAGATTCGCATTAATTTGAGCATGA 59.962 34.615 0.00 0.00 0.00 3.07
2558 6095 6.978338 AGATTCGCATTAATTTGAGCATGAT 58.022 32.000 0.00 0.00 0.00 2.45
2559 6096 6.861572 AGATTCGCATTAATTTGAGCATGATG 59.138 34.615 0.00 0.00 0.00 3.07
2560 6097 4.292599 TCGCATTAATTTGAGCATGATGC 58.707 39.130 9.89 9.89 45.46 3.91
2561 6098 3.427528 CGCATTAATTTGAGCATGATGCC 59.572 43.478 14.72 6.37 46.52 4.40
2562 6099 3.744426 GCATTAATTTGAGCATGATGCCC 59.256 43.478 14.72 2.05 46.52 5.36
2563 6100 4.312443 CATTAATTTGAGCATGATGCCCC 58.688 43.478 14.72 7.13 46.52 5.80
2564 6101 2.170012 AATTTGAGCATGATGCCCCT 57.830 45.000 14.72 0.00 46.52 4.79
2565 6102 3.317455 AATTTGAGCATGATGCCCCTA 57.683 42.857 14.72 0.59 46.52 3.53
2566 6103 3.537795 ATTTGAGCATGATGCCCCTAT 57.462 42.857 14.72 0.36 46.52 2.57
2567 6104 2.281539 TTGAGCATGATGCCCCTATG 57.718 50.000 14.72 0.00 46.52 2.23
2568 6105 1.142936 TGAGCATGATGCCCCTATGT 58.857 50.000 14.72 0.00 46.52 2.29
2569 6106 2.337849 TGAGCATGATGCCCCTATGTA 58.662 47.619 14.72 0.00 46.52 2.29
2570 6107 2.914941 TGAGCATGATGCCCCTATGTAT 59.085 45.455 14.72 0.00 46.52 2.29
2571 6108 3.331591 TGAGCATGATGCCCCTATGTATT 59.668 43.478 14.72 0.00 46.52 1.89
2572 6109 4.202599 TGAGCATGATGCCCCTATGTATTT 60.203 41.667 14.72 0.00 46.52 1.40
2573 6110 4.338879 AGCATGATGCCCCTATGTATTTC 58.661 43.478 14.72 0.00 46.52 2.17
2574 6111 4.081406 GCATGATGCCCCTATGTATTTCA 58.919 43.478 6.04 0.00 37.42 2.69
2575 6112 4.708421 GCATGATGCCCCTATGTATTTCAT 59.292 41.667 6.04 0.00 37.42 2.57
2576 6113 5.186409 GCATGATGCCCCTATGTATTTCATT 59.814 40.000 6.04 0.00 37.42 2.57
2577 6114 6.626623 GCATGATGCCCCTATGTATTTCATTC 60.627 42.308 6.04 0.00 37.42 2.67
2578 6115 5.003160 TGATGCCCCTATGTATTTCATTCG 58.997 41.667 0.00 0.00 37.91 3.34
2579 6116 4.698201 TGCCCCTATGTATTTCATTCGA 57.302 40.909 0.00 0.00 37.91 3.71
2580 6117 5.241403 TGCCCCTATGTATTTCATTCGAT 57.759 39.130 0.00 0.00 37.91 3.59
2581 6118 5.630121 TGCCCCTATGTATTTCATTCGATT 58.370 37.500 0.00 0.00 37.91 3.34
2582 6119 6.068010 TGCCCCTATGTATTTCATTCGATTT 58.932 36.000 0.00 0.00 37.91 2.17
2583 6120 6.549364 TGCCCCTATGTATTTCATTCGATTTT 59.451 34.615 0.00 0.00 37.91 1.82
2584 6121 7.084486 GCCCCTATGTATTTCATTCGATTTTC 58.916 38.462 0.00 0.00 37.91 2.29
2585 6122 7.255451 GCCCCTATGTATTTCATTCGATTTTCA 60.255 37.037 0.00 0.00 37.91 2.69
2586 6123 8.629158 CCCCTATGTATTTCATTCGATTTTCAA 58.371 33.333 0.00 0.00 37.91 2.69
2601 6138 8.106247 TCGATTTTCAAAATAGTATATGGGCC 57.894 34.615 0.00 0.00 0.00 5.80
2602 6139 7.021196 CGATTTTCAAAATAGTATATGGGCCG 58.979 38.462 0.00 0.00 0.00 6.13
2603 6140 6.642707 TTTTCAAAATAGTATATGGGCCGG 57.357 37.500 0.00 0.00 0.00 6.13
2604 6141 5.570205 TTCAAAATAGTATATGGGCCGGA 57.430 39.130 5.05 0.00 0.00 5.14
2605 6142 5.160607 TCAAAATAGTATATGGGCCGGAG 57.839 43.478 5.05 0.00 0.00 4.63
2606 6143 4.841813 TCAAAATAGTATATGGGCCGGAGA 59.158 41.667 5.05 0.00 0.00 3.71
2607 6144 5.308497 TCAAAATAGTATATGGGCCGGAGAA 59.692 40.000 5.05 0.00 0.00 2.87
2608 6145 6.012858 TCAAAATAGTATATGGGCCGGAGAAT 60.013 38.462 5.05 0.00 0.00 2.40
2609 6146 5.615925 AATAGTATATGGGCCGGAGAATC 57.384 43.478 5.05 0.00 0.00 2.52
2658 6195 5.242795 GGGGGTATATGAGTTTGCATACT 57.757 43.478 9.75 9.75 33.88 2.12
2659 6196 5.631119 GGGGGTATATGAGTTTGCATACTT 58.369 41.667 11.28 0.00 33.88 2.24
2660 6197 6.775708 GGGGGTATATGAGTTTGCATACTTA 58.224 40.000 11.28 7.73 33.88 2.24
2661 6198 7.228590 GGGGGTATATGAGTTTGCATACTTAA 58.771 38.462 11.28 3.95 33.88 1.85
2662 6199 7.390718 GGGGGTATATGAGTTTGCATACTTAAG 59.609 40.741 11.28 0.00 33.88 1.85
2663 6200 8.154856 GGGGTATATGAGTTTGCATACTTAAGA 58.845 37.037 11.28 1.56 33.88 2.10
2664 6201 9.555727 GGGTATATGAGTTTGCATACTTAAGAA 57.444 33.333 11.28 0.00 33.88 2.52
2669 6206 7.801716 TGAGTTTGCATACTTAAGAAGTTGT 57.198 32.000 11.28 0.00 42.81 3.32
2670 6207 7.861630 TGAGTTTGCATACTTAAGAAGTTGTC 58.138 34.615 11.28 0.00 42.81 3.18
2671 6208 7.497579 TGAGTTTGCATACTTAAGAAGTTGTCA 59.502 33.333 11.28 0.00 42.81 3.58
2672 6209 8.220755 AGTTTGCATACTTAAGAAGTTGTCAA 57.779 30.769 10.09 6.88 42.81 3.18
2673 6210 8.345565 AGTTTGCATACTTAAGAAGTTGTCAAG 58.654 33.333 10.09 0.00 42.81 3.02
2674 6211 7.801716 TTGCATACTTAAGAAGTTGTCAAGT 57.198 32.000 10.09 0.00 42.81 3.16
2675 6212 7.801716 TGCATACTTAAGAAGTTGTCAAGTT 57.198 32.000 10.09 5.30 42.81 2.66
2676 6213 8.220755 TGCATACTTAAGAAGTTGTCAAGTTT 57.779 30.769 10.09 0.00 42.81 2.66
2677 6214 8.128582 TGCATACTTAAGAAGTTGTCAAGTTTG 58.871 33.333 10.09 0.00 42.81 2.93
2678 6215 8.342634 GCATACTTAAGAAGTTGTCAAGTTTGA 58.657 33.333 10.09 0.00 42.81 2.69
2681 6218 8.106247 ACTTAAGAAGTTGTCAAGTTTGAACA 57.894 30.769 10.09 0.00 39.04 3.18
2682 6219 8.573035 ACTTAAGAAGTTGTCAAGTTTGAACAA 58.427 29.630 10.09 1.89 39.04 2.83
2683 6220 9.405587 CTTAAGAAGTTGTCAAGTTTGAACAAA 57.594 29.630 7.09 0.00 39.21 2.83
2684 6221 9.921637 TTAAGAAGTTGTCAAGTTTGAACAAAT 57.078 25.926 7.09 1.37 39.21 2.32
2686 6223 9.573133 AAGAAGTTGTCAAGTTTGAACAAATAG 57.427 29.630 7.09 0.00 39.21 1.73
2687 6224 8.739972 AGAAGTTGTCAAGTTTGAACAAATAGT 58.260 29.630 7.09 0.00 39.21 2.12
2688 6225 8.911247 AAGTTGTCAAGTTTGAACAAATAGTC 57.089 30.769 0.00 0.00 39.21 2.59
2689 6226 7.186804 AGTTGTCAAGTTTGAACAAATAGTCG 58.813 34.615 3.34 0.00 39.21 4.18
2690 6227 6.055231 TGTCAAGTTTGAACAAATAGTCGG 57.945 37.500 3.34 0.00 39.21 4.79
2691 6228 4.909880 GTCAAGTTTGAACAAATAGTCGGC 59.090 41.667 3.34 0.00 39.21 5.54
2729 6268 9.425577 CTTTACCTACTAATAAAGCAGCTATCC 57.574 37.037 0.00 0.00 33.04 2.59
2745 6288 0.903454 ATCCCTTCTGGTCGTCCGTT 60.903 55.000 0.00 0.00 36.30 4.44
2811 6354 1.150536 GCAGTCCAAGGTCAACCCA 59.849 57.895 0.00 0.00 36.42 4.51
2830 6373 3.428452 CCCAAACAGTTACGAGCGATAGA 60.428 47.826 0.00 0.00 39.76 1.98
2831 6374 4.171005 CCAAACAGTTACGAGCGATAGAA 58.829 43.478 0.00 0.00 39.76 2.10
2832 6375 4.624024 CCAAACAGTTACGAGCGATAGAAA 59.376 41.667 0.00 0.00 39.76 2.52
2860 6404 1.135094 ACTCCCAATCGCATCTCCAT 58.865 50.000 0.00 0.00 0.00 3.41
2953 6497 2.041115 CGCTGGAGACACTCGAGGA 61.041 63.158 18.41 0.00 36.93 3.71
3032 6576 2.833227 CGGGGTTCTTGGTGGTCA 59.167 61.111 0.00 0.00 0.00 4.02
3466 8118 2.048127 AAGAACGCCTCGCTCCAC 60.048 61.111 0.00 0.00 0.00 4.02
3487 8139 2.622436 GTCCTCCTTTCTTGACCATCG 58.378 52.381 0.00 0.00 0.00 3.84
3568 8220 9.650539 TGAGAAAGAAGATGATCTTAAAGTGAG 57.349 33.333 7.82 0.00 38.69 3.51
3606 8258 7.467325 AGATGGATGGATGGATGATAATGAT 57.533 36.000 0.00 0.00 0.00 2.45
3642 8294 2.370189 GCTGGTGAGCAATATAGGACCT 59.630 50.000 0.00 0.00 45.46 3.85
3656 8308 1.703513 AGGACCTTGTTACCCAACCTC 59.296 52.381 0.00 0.00 33.41 3.85
4265 8946 4.520846 CTGAATGAACGCCGCGGC 62.521 66.667 39.82 39.82 37.85 6.53
4365 9049 2.268298 GTTGTCGATAGCGTGTGGAAT 58.732 47.619 0.00 0.00 38.98 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 175 0.888619 CACCAGAGTTCGTCCTGCTA 59.111 55.000 0.00 0.00 0.00 3.49
191 195 2.640284 ACCACCCCCAAAAATGCTAT 57.360 45.000 0.00 0.00 0.00 2.97
276 280 1.376424 CACAACCTGGAGCTGCGAT 60.376 57.895 0.00 0.00 0.00 4.58
474 479 1.600636 CCCCTGCTGCTTTCACGAA 60.601 57.895 0.00 0.00 0.00 3.85
516 521 0.824109 CCCATCTCCTGCAGTACGAA 59.176 55.000 13.81 0.00 0.00 3.85
526 531 3.116823 TGTCTGATCTCATCCCATCTCCT 60.117 47.826 0.00 0.00 0.00 3.69
649 664 2.584608 GCTCCCGCTGGCTTTCTA 59.415 61.111 0.00 0.00 0.00 2.10
652 667 4.329545 TTCGCTCCCGCTGGCTTT 62.330 61.111 0.00 0.00 0.00 3.51
866 4131 9.590451 CTCCCGTACTTCAAATGTTAGTAAATA 57.410 33.333 0.00 0.00 0.00 1.40
867 4132 8.098912 ACTCCCGTACTTCAAATGTTAGTAAAT 58.901 33.333 0.00 0.00 0.00 1.40
868 4133 7.444299 ACTCCCGTACTTCAAATGTTAGTAAA 58.556 34.615 0.00 0.00 0.00 2.01
869 4134 6.996509 ACTCCCGTACTTCAAATGTTAGTAA 58.003 36.000 0.00 0.00 0.00 2.24
870 4135 6.594788 ACTCCCGTACTTCAAATGTTAGTA 57.405 37.500 0.00 0.00 0.00 1.82
871 4136 5.479124 ACTCCCGTACTTCAAATGTTAGT 57.521 39.130 0.00 0.00 0.00 2.24
872 4137 5.809051 GGTACTCCCGTACTTCAAATGTTAG 59.191 44.000 0.00 0.00 44.30 2.34
873 4138 5.337491 GGGTACTCCCGTACTTCAAATGTTA 60.337 44.000 0.00 0.00 44.74 2.41
874 4139 4.564199 GGGTACTCCCGTACTTCAAATGTT 60.564 45.833 0.00 0.00 44.74 2.71
875 4140 3.055602 GGGTACTCCCGTACTTCAAATGT 60.056 47.826 0.00 0.00 44.74 2.71
876 4141 3.528532 GGGTACTCCCGTACTTCAAATG 58.471 50.000 0.00 0.00 44.74 2.32
877 4142 3.900966 GGGTACTCCCGTACTTCAAAT 57.099 47.619 0.00 0.00 44.74 2.32
889 4154 0.031414 TCCCAGCCTTAGGGTACTCC 60.031 60.000 1.41 0.00 46.82 3.85
890 4155 1.415200 CTCCCAGCCTTAGGGTACTC 58.585 60.000 1.41 0.00 46.82 2.59
891 4156 0.031010 CCTCCCAGCCTTAGGGTACT 60.031 60.000 1.41 0.00 46.82 2.73
892 4157 1.054978 CCCTCCCAGCCTTAGGGTAC 61.055 65.000 1.41 0.00 46.82 3.34
893 4158 1.316969 CCCTCCCAGCCTTAGGGTA 59.683 63.158 1.41 0.00 46.82 3.69
894 4159 2.042930 CCCTCCCAGCCTTAGGGT 59.957 66.667 0.00 0.00 46.82 4.34
896 4161 2.447714 GCTCCCTCCCAGCCTTAGG 61.448 68.421 0.00 0.00 0.00 2.69
897 4162 1.690633 TGCTCCCTCCCAGCCTTAG 60.691 63.158 0.00 0.00 35.89 2.18
898 4163 1.995626 GTGCTCCCTCCCAGCCTTA 60.996 63.158 0.00 0.00 35.89 2.69
899 4164 3.334054 GTGCTCCCTCCCAGCCTT 61.334 66.667 0.00 0.00 35.89 4.35
903 4168 2.946988 TATCCGGTGCTCCCTCCCAG 62.947 65.000 0.00 0.00 0.00 4.45
904 4169 3.016613 TATCCGGTGCTCCCTCCCA 62.017 63.158 0.00 0.00 0.00 4.37
905 4170 2.122989 TATCCGGTGCTCCCTCCC 60.123 66.667 0.00 0.00 0.00 4.30
906 4171 1.049289 AAGTATCCGGTGCTCCCTCC 61.049 60.000 0.00 0.00 0.00 4.30
907 4172 0.105039 CAAGTATCCGGTGCTCCCTC 59.895 60.000 0.00 0.00 0.00 4.30
908 4173 0.325296 TCAAGTATCCGGTGCTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
909 4174 0.539986 TTCAAGTATCCGGTGCTCCC 59.460 55.000 0.00 0.00 0.00 4.30
910 4175 1.653151 GTTCAAGTATCCGGTGCTCC 58.347 55.000 0.00 0.00 0.00 4.70
911 4176 1.653151 GGTTCAAGTATCCGGTGCTC 58.347 55.000 0.00 0.00 0.00 4.26
912 4177 0.252197 GGGTTCAAGTATCCGGTGCT 59.748 55.000 0.00 0.00 0.00 4.40
913 4178 0.746923 GGGGTTCAAGTATCCGGTGC 60.747 60.000 0.00 0.00 0.00 5.01
914 4179 0.461339 CGGGGTTCAAGTATCCGGTG 60.461 60.000 0.00 0.00 37.35 4.94
915 4180 1.902556 CGGGGTTCAAGTATCCGGT 59.097 57.895 0.00 0.00 37.35 5.28
916 4181 1.523032 GCGGGGTTCAAGTATCCGG 60.523 63.158 0.00 0.00 40.88 5.14
917 4182 0.810031 CAGCGGGGTTCAAGTATCCG 60.810 60.000 0.00 0.00 43.13 4.18
918 4183 0.252197 ACAGCGGGGTTCAAGTATCC 59.748 55.000 0.00 0.00 0.00 2.59
919 4184 1.369625 CACAGCGGGGTTCAAGTATC 58.630 55.000 0.00 0.00 0.00 2.24
920 4185 0.676782 GCACAGCGGGGTTCAAGTAT 60.677 55.000 0.00 0.00 0.00 2.12
921 4186 1.302192 GCACAGCGGGGTTCAAGTA 60.302 57.895 0.00 0.00 0.00 2.24
922 4187 2.594592 GCACAGCGGGGTTCAAGT 60.595 61.111 0.00 0.00 0.00 3.16
923 4188 3.365265 GGCACAGCGGGGTTCAAG 61.365 66.667 0.00 0.00 0.00 3.02
924 4189 3.884774 AGGCACAGCGGGGTTCAA 61.885 61.111 0.00 0.00 0.00 2.69
925 4190 4.641645 CAGGCACAGCGGGGTTCA 62.642 66.667 0.00 0.00 0.00 3.18
933 4198 4.416738 GTCCCCTCCAGGCACAGC 62.417 72.222 0.00 0.00 0.00 4.40
934 4199 2.930019 TGTCCCCTCCAGGCACAG 60.930 66.667 0.00 0.00 0.00 3.66
935 4200 3.249189 GTGTCCCCTCCAGGCACA 61.249 66.667 0.00 0.00 35.38 4.57
936 4201 3.249189 TGTGTCCCCTCCAGGCAC 61.249 66.667 0.00 0.00 35.66 5.01
937 4202 3.249189 GTGTGTCCCCTCCAGGCA 61.249 66.667 0.00 0.00 0.00 4.75
938 4203 4.394712 CGTGTGTCCCCTCCAGGC 62.395 72.222 0.00 0.00 0.00 4.85
939 4204 2.923035 ACGTGTGTCCCCTCCAGG 60.923 66.667 0.00 0.00 0.00 4.45
940 4205 1.754380 TTCACGTGTGTCCCCTCCAG 61.754 60.000 16.51 0.00 0.00 3.86
941 4206 1.762858 TTCACGTGTGTCCCCTCCA 60.763 57.895 16.51 0.00 0.00 3.86
942 4207 1.301479 GTTCACGTGTGTCCCCTCC 60.301 63.158 16.51 0.00 0.00 4.30
943 4208 1.301479 GGTTCACGTGTGTCCCCTC 60.301 63.158 16.51 0.00 0.00 4.30
944 4209 2.814835 GGGTTCACGTGTGTCCCCT 61.815 63.158 24.04 0.00 38.66 4.79
945 4210 2.281276 GGGTTCACGTGTGTCCCC 60.281 66.667 24.04 19.84 38.66 4.81
946 4211 2.281276 GGGGTTCACGTGTGTCCC 60.281 66.667 25.41 25.41 41.32 4.46
947 4212 2.663852 CGGGGTTCACGTGTGTCC 60.664 66.667 16.51 15.24 0.00 4.02
948 4213 3.343421 GCGGGGTTCACGTGTGTC 61.343 66.667 16.51 7.10 0.00 3.67
949 4214 3.857038 AGCGGGGTTCACGTGTGT 61.857 61.111 16.51 0.00 0.00 3.72
950 4215 3.345808 CAGCGGGGTTCACGTGTG 61.346 66.667 16.51 0.00 0.00 3.82
951 4216 3.857038 ACAGCGGGGTTCACGTGT 61.857 61.111 16.51 0.00 0.00 4.49
952 4217 3.345808 CACAGCGGGGTTCACGTG 61.346 66.667 9.94 9.94 0.00 4.49
955 4220 4.643387 AGGCACAGCGGGGTTCAC 62.643 66.667 0.00 0.00 0.00 3.18
956 4221 4.641645 CAGGCACAGCGGGGTTCA 62.642 66.667 0.00 0.00 0.00 3.18
957 4222 4.643387 ACAGGCACAGCGGGGTTC 62.643 66.667 0.00 0.00 0.00 3.62
958 4223 4.954970 CACAGGCACAGCGGGGTT 62.955 66.667 0.00 0.00 0.00 4.11
970 4235 2.575125 ATCTGCTCTCGCTGCACAGG 62.575 60.000 0.00 0.00 36.37 4.00
971 4236 1.146957 GATCTGCTCTCGCTGCACAG 61.147 60.000 0.00 0.00 36.37 3.66
972 4237 1.153686 GATCTGCTCTCGCTGCACA 60.154 57.895 0.00 0.00 36.37 4.57
973 4238 0.871163 GAGATCTGCTCTCGCTGCAC 60.871 60.000 0.00 0.00 41.07 4.57
974 4239 1.436748 GAGATCTGCTCTCGCTGCA 59.563 57.895 0.00 0.00 41.07 4.41
975 4240 4.324424 GAGATCTGCTCTCGCTGC 57.676 61.111 0.00 0.00 41.07 5.25
981 4246 2.042537 TGGCCGGAGATCTGCTCT 60.043 61.111 5.05 0.00 43.43 4.09
982 4247 2.037620 ATGTGGCCGGAGATCTGCTC 62.038 60.000 5.05 3.92 43.17 4.26
983 4248 2.068821 ATGTGGCCGGAGATCTGCT 61.069 57.895 5.05 0.00 0.00 4.24
984 4249 1.890979 CATGTGGCCGGAGATCTGC 60.891 63.158 5.05 0.48 0.00 4.26
985 4250 1.227764 CCATGTGGCCGGAGATCTG 60.228 63.158 5.05 0.00 0.00 2.90
986 4251 3.234349 CCATGTGGCCGGAGATCT 58.766 61.111 5.05 0.00 0.00 2.75
996 4261 1.978617 GGTCTTGTGGGCCATGTGG 60.979 63.158 10.70 0.54 38.53 4.17
997 4262 2.334946 CGGTCTTGTGGGCCATGTG 61.335 63.158 10.70 2.55 0.00 3.21
998 4263 2.034066 CGGTCTTGTGGGCCATGT 59.966 61.111 10.70 0.00 0.00 3.21
999 4264 1.746615 CTCGGTCTTGTGGGCCATG 60.747 63.158 10.70 3.38 0.00 3.66
1000 4265 2.224159 ACTCGGTCTTGTGGGCCAT 61.224 57.895 10.70 0.00 0.00 4.40
1001 4266 2.847234 ACTCGGTCTTGTGGGCCA 60.847 61.111 0.00 0.00 0.00 5.36
1002 4267 2.358737 CACTCGGTCTTGTGGGCC 60.359 66.667 0.00 0.00 0.00 5.80
1006 4271 0.663568 GACGTCCACTCGGTCTTGTG 60.664 60.000 3.51 0.00 34.94 3.33
1007 4272 1.658673 GACGTCCACTCGGTCTTGT 59.341 57.895 3.51 0.00 34.94 3.16
1008 4273 1.442184 CGACGTCCACTCGGTCTTG 60.442 63.158 10.58 0.00 34.94 3.02
1009 4274 2.952245 CGACGTCCACTCGGTCTT 59.048 61.111 10.58 0.00 34.94 3.01
1010 4275 3.735029 GCGACGTCCACTCGGTCT 61.735 66.667 10.58 0.00 34.94 3.85
1011 4276 4.034258 TGCGACGTCCACTCGGTC 62.034 66.667 10.58 0.00 34.94 4.79
1012 4277 4.338539 GTGCGACGTCCACTCGGT 62.339 66.667 22.27 0.00 34.94 4.69
1015 4280 4.338539 ACCGTGCGACGTCCACTC 62.339 66.667 24.85 12.92 40.58 3.51
1016 4281 4.338539 GACCGTGCGACGTCCACT 62.339 66.667 24.85 13.78 40.58 4.00
1017 4282 4.634133 TGACCGTGCGACGTCCAC 62.634 66.667 20.62 20.62 40.58 4.02
1018 4283 4.634133 GTGACCGTGCGACGTCCA 62.634 66.667 10.58 6.30 40.58 4.02
1020 4285 4.338539 AGGTGACCGTGCGACGTC 62.339 66.667 5.18 5.18 40.58 4.34
1021 4286 4.640855 CAGGTGACCGTGCGACGT 62.641 66.667 0.00 0.00 40.58 4.34
1078 4344 2.413837 GCACGGTGCTTCTTTCTTCTA 58.586 47.619 25.08 0.00 40.96 2.10
1106 4372 2.158959 CGCAGTCCGAATGTCCGAC 61.159 63.158 0.00 0.00 40.02 4.79
1314 4581 0.249155 TGACACCGTTCGACCTCAAC 60.249 55.000 0.00 0.00 0.00 3.18
1433 4700 1.539827 CGACAAAATTGAGGTGACCCC 59.460 52.381 0.00 0.00 0.00 4.95
1518 4785 3.250280 AGCTCACATATACCTACGACACG 59.750 47.826 0.00 0.00 0.00 4.49
1596 4870 8.282455 TGACATCCTAACACAAACACTTTTAA 57.718 30.769 0.00 0.00 0.00 1.52
1631 4905 9.353999 GTCAGGAGCGTATAAATTTTCATTTTT 57.646 29.630 0.00 0.00 34.29 1.94
1637 4911 6.417191 TGTGTCAGGAGCGTATAAATTTTC 57.583 37.500 0.00 0.00 0.00 2.29
1638 4912 6.038271 GGATGTGTCAGGAGCGTATAAATTTT 59.962 38.462 0.00 0.00 0.00 1.82
1639 4913 5.527582 GGATGTGTCAGGAGCGTATAAATTT 59.472 40.000 0.00 0.00 0.00 1.82
1640 4914 5.057149 GGATGTGTCAGGAGCGTATAAATT 58.943 41.667 0.00 0.00 0.00 1.82
1641 4915 4.632153 GGATGTGTCAGGAGCGTATAAAT 58.368 43.478 0.00 0.00 0.00 1.40
1642 4916 3.490249 CGGATGTGTCAGGAGCGTATAAA 60.490 47.826 0.00 0.00 0.00 1.40
1709 5027 1.372997 CGGCGATTCGATACCCAGG 60.373 63.158 10.88 0.00 0.00 4.45
1711 5029 2.028484 GCGGCGATTCGATACCCA 59.972 61.111 12.98 0.00 0.00 4.51
1717 5035 1.654023 TTCAGAGAGCGGCGATTCGA 61.654 55.000 12.98 4.68 0.00 3.71
1772 5205 7.362574 GGCCAAGCAACTAAAGATTGTACAATA 60.363 37.037 20.83 4.91 0.00 1.90
1808 5251 7.299134 TCCAAGGGTCTTGGAGTTATTAAAAA 58.701 34.615 21.44 0.04 43.17 1.94
1809 5252 6.854578 TCCAAGGGTCTTGGAGTTATTAAAA 58.145 36.000 21.44 0.49 43.17 1.52
1810 5253 6.457159 TCCAAGGGTCTTGGAGTTATTAAA 57.543 37.500 21.44 1.12 43.17 1.52
1841 5285 1.056660 AACAATCCCAGTCGACACCT 58.943 50.000 19.50 0.00 0.00 4.00
1925 5370 6.493115 TGCCAAATCTAAAACTTGAATCTGGA 59.507 34.615 0.00 0.00 0.00 3.86
2024 5471 2.342279 CGGTCACCACGTGTCCAT 59.658 61.111 15.65 0.00 40.69 3.41
2040 5487 3.484229 GGCGACAAATCTTGAGATTGACG 60.484 47.826 6.98 12.57 43.41 4.35
2082 5529 4.584743 CCATGCACACAGAGTACCTCTATA 59.415 45.833 0.00 0.00 38.99 1.31
2092 5539 1.376543 GATGGACCATGCACACAGAG 58.623 55.000 12.99 0.00 0.00 3.35
2094 5541 1.371337 CCGATGGACCATGCACACAG 61.371 60.000 12.99 0.00 0.00 3.66
2153 5600 4.253685 CCCATAAAAGTGTCATCGTGTCT 58.746 43.478 0.00 0.00 0.00 3.41
2195 5642 7.109006 AGCAAAAGAAAGAACAAATTATGCG 57.891 32.000 0.00 0.00 34.33 4.73
2201 5648 5.458779 GCACGTAGCAAAAGAAAGAACAAAT 59.541 36.000 5.30 0.00 44.79 2.32
2218 5665 3.249799 TGTTTCAATTCAGTGGCACGTAG 59.750 43.478 12.71 6.71 0.00 3.51
2226 5759 6.589523 TCCACAAAACTTGTTTCAATTCAGTG 59.410 34.615 0.00 0.00 43.23 3.66
2370 5903 0.320374 TGAAGAGTACCCCAACTGCG 59.680 55.000 0.00 0.00 0.00 5.18
2373 5906 2.224450 CGGTTTGAAGAGTACCCCAACT 60.224 50.000 0.00 0.00 0.00 3.16
2389 5922 7.229907 AGTCCAATTACACTATTGTTTCGGTTT 59.770 33.333 0.00 0.00 37.15 3.27
2451 5988 8.282592 GTGCATCTCATATTATGTCGCTAAAAA 58.717 33.333 3.67 0.00 0.00 1.94
2477 6014 9.950680 GTTCTCACATTTACAACCCATTATATG 57.049 33.333 0.00 0.00 0.00 1.78
2505 6042 3.553096 CCCGGTATAGTGAGCACATTCTC 60.553 52.174 0.00 0.00 0.00 2.87
2516 6053 3.210232 TCTCAGACTCCCGGTATAGTG 57.790 52.381 0.00 0.00 0.00 2.74
2520 6057 2.231529 CGAATCTCAGACTCCCGGTAT 58.768 52.381 0.00 0.00 0.00 2.73
2538 6075 4.292599 GCATCATGCTCAAATTAATGCGA 58.707 39.130 1.02 0.00 40.96 5.10
2539 6076 3.427528 GGCATCATGCTCAAATTAATGCG 59.572 43.478 10.11 0.00 44.28 4.73
2540 6077 3.744426 GGGCATCATGCTCAAATTAATGC 59.256 43.478 10.11 2.51 45.01 3.56
2549 6086 9.606634 ATGAAATACATAGGGGCATCATGCTCA 62.607 40.741 12.77 1.91 40.82 4.26
2550 6087 3.641434 ATACATAGGGGCATCATGCTC 57.359 47.619 10.11 4.89 44.90 4.26
2551 6088 4.202599 TGAAATACATAGGGGCATCATGCT 60.203 41.667 10.11 0.00 44.28 3.79
2552 6089 4.081406 TGAAATACATAGGGGCATCATGC 58.919 43.478 0.00 0.00 44.08 4.06
2553 6090 6.403964 CGAATGAAATACATAGGGGCATCATG 60.404 42.308 0.00 0.00 38.38 3.07
2554 6091 5.649395 CGAATGAAATACATAGGGGCATCAT 59.351 40.000 0.00 0.00 38.38 2.45
2555 6092 5.003160 CGAATGAAATACATAGGGGCATCA 58.997 41.667 0.00 0.00 38.38 3.07
2556 6093 5.245531 TCGAATGAAATACATAGGGGCATC 58.754 41.667 0.00 0.00 38.38 3.91
2557 6094 5.241403 TCGAATGAAATACATAGGGGCAT 57.759 39.130 0.00 0.00 38.38 4.40
2558 6095 4.698201 TCGAATGAAATACATAGGGGCA 57.302 40.909 0.00 0.00 38.38 5.36
2559 6096 6.575162 AAATCGAATGAAATACATAGGGGC 57.425 37.500 0.00 0.00 38.38 5.80
2560 6097 8.165239 TGAAAATCGAATGAAATACATAGGGG 57.835 34.615 0.00 0.00 38.38 4.79
2575 6112 8.573035 GGCCCATATACTATTTTGAAAATCGAA 58.427 33.333 6.40 0.00 0.00 3.71
2576 6113 7.094975 CGGCCCATATACTATTTTGAAAATCGA 60.095 37.037 6.40 0.00 0.00 3.59
2577 6114 7.021196 CGGCCCATATACTATTTTGAAAATCG 58.979 38.462 6.40 3.52 0.00 3.34
2578 6115 7.175990 TCCGGCCCATATACTATTTTGAAAATC 59.824 37.037 6.40 0.00 0.00 2.17
2579 6116 7.007723 TCCGGCCCATATACTATTTTGAAAAT 58.992 34.615 8.35 8.35 0.00 1.82
2580 6117 6.366340 TCCGGCCCATATACTATTTTGAAAA 58.634 36.000 0.00 0.00 0.00 2.29
2581 6118 5.942961 TCCGGCCCATATACTATTTTGAAA 58.057 37.500 0.00 0.00 0.00 2.69
2582 6119 5.308497 TCTCCGGCCCATATACTATTTTGAA 59.692 40.000 0.00 0.00 0.00 2.69
2583 6120 4.841813 TCTCCGGCCCATATACTATTTTGA 59.158 41.667 0.00 0.00 0.00 2.69
2584 6121 5.160607 TCTCCGGCCCATATACTATTTTG 57.839 43.478 0.00 0.00 0.00 2.44
2585 6122 5.836024 TTCTCCGGCCCATATACTATTTT 57.164 39.130 0.00 0.00 0.00 1.82
2586 6123 5.104485 GGATTCTCCGGCCCATATACTATTT 60.104 44.000 0.00 0.00 0.00 1.40
2587 6124 4.409247 GGATTCTCCGGCCCATATACTATT 59.591 45.833 0.00 0.00 0.00 1.73
2588 6125 3.967987 GGATTCTCCGGCCCATATACTAT 59.032 47.826 0.00 0.00 0.00 2.12
2589 6126 3.371965 GGATTCTCCGGCCCATATACTA 58.628 50.000 0.00 0.00 0.00 1.82
2590 6127 2.188817 GGATTCTCCGGCCCATATACT 58.811 52.381 0.00 0.00 0.00 2.12
2591 6128 1.209747 GGGATTCTCCGGCCCATATAC 59.790 57.143 9.08 0.00 41.64 1.47
2592 6129 1.203376 TGGGATTCTCCGGCCCATATA 60.203 52.381 12.38 0.00 46.57 0.86
2593 6130 0.475632 TGGGATTCTCCGGCCCATAT 60.476 55.000 12.38 0.00 46.57 1.78
2594 6131 1.074090 TGGGATTCTCCGGCCCATA 60.074 57.895 12.38 0.00 46.57 2.74
2595 6132 2.368192 TGGGATTCTCCGGCCCAT 60.368 61.111 12.38 0.00 46.57 4.00
2597 6134 2.284515 AATGTGGGATTCTCCGGCCC 62.285 60.000 7.12 7.12 42.38 5.80
2598 6135 0.472471 TAATGTGGGATTCTCCGGCC 59.528 55.000 0.00 0.00 37.43 6.13
2599 6136 1.884235 CTAATGTGGGATTCTCCGGC 58.116 55.000 0.00 0.00 37.43 6.13
2600 6137 1.417890 AGCTAATGTGGGATTCTCCGG 59.582 52.381 0.00 0.00 37.43 5.14
2601 6138 2.874701 CAAGCTAATGTGGGATTCTCCG 59.125 50.000 0.00 0.00 37.43 4.63
2602 6139 3.217626 CCAAGCTAATGTGGGATTCTCC 58.782 50.000 0.00 0.00 35.23 3.71
2636 6173 5.242795 AGTATGCAAACTCATATACCCCC 57.757 43.478 0.00 0.00 32.24 5.40
2637 6174 8.154856 TCTTAAGTATGCAAACTCATATACCCC 58.845 37.037 1.63 0.00 32.24 4.95
2638 6175 9.555727 TTCTTAAGTATGCAAACTCATATACCC 57.444 33.333 1.63 0.00 32.24 3.69
2643 6180 9.502091 ACAACTTCTTAAGTATGCAAACTCATA 57.498 29.630 1.63 0.00 41.91 2.15
2644 6181 8.396272 ACAACTTCTTAAGTATGCAAACTCAT 57.604 30.769 1.63 0.00 41.91 2.90
2645 6182 7.497579 TGACAACTTCTTAAGTATGCAAACTCA 59.502 33.333 1.63 0.00 41.91 3.41
2646 6183 7.861630 TGACAACTTCTTAAGTATGCAAACTC 58.138 34.615 1.63 0.00 41.91 3.01
2647 6184 7.801716 TGACAACTTCTTAAGTATGCAAACT 57.198 32.000 1.63 0.00 41.91 2.66
2648 6185 8.129211 ACTTGACAACTTCTTAAGTATGCAAAC 58.871 33.333 1.63 0.00 41.91 2.93
2649 6186 8.220755 ACTTGACAACTTCTTAAGTATGCAAA 57.779 30.769 1.63 0.00 41.91 3.68
2650 6187 7.801716 ACTTGACAACTTCTTAAGTATGCAA 57.198 32.000 1.63 6.05 41.91 4.08
2651 6188 7.801716 AACTTGACAACTTCTTAAGTATGCA 57.198 32.000 1.63 0.00 41.91 3.96
2652 6189 8.342634 TCAAACTTGACAACTTCTTAAGTATGC 58.657 33.333 1.63 0.00 34.61 3.14
2655 6192 9.221933 TGTTCAAACTTGACAACTTCTTAAGTA 57.778 29.630 1.63 0.00 37.60 2.24
2656 6193 8.106247 TGTTCAAACTTGACAACTTCTTAAGT 57.894 30.769 1.63 0.00 39.24 2.24
2657 6194 8.964420 TTGTTCAAACTTGACAACTTCTTAAG 57.036 30.769 0.00 0.00 36.83 1.85
2658 6195 9.921637 ATTTGTTCAAACTTGACAACTTCTTAA 57.078 25.926 0.00 0.00 36.83 1.85
2660 6197 9.573133 CTATTTGTTCAAACTTGACAACTTCTT 57.427 29.630 0.00 0.00 36.83 2.52
2661 6198 8.739972 ACTATTTGTTCAAACTTGACAACTTCT 58.260 29.630 0.00 0.00 36.83 2.85
2662 6199 8.911247 ACTATTTGTTCAAACTTGACAACTTC 57.089 30.769 0.00 0.00 36.83 3.01
2663 6200 7.696453 CGACTATTTGTTCAAACTTGACAACTT 59.304 33.333 0.00 0.00 36.83 2.66
2664 6201 7.186804 CGACTATTTGTTCAAACTTGACAACT 58.813 34.615 0.00 0.00 36.83 3.16
2665 6202 6.413818 CCGACTATTTGTTCAAACTTGACAAC 59.586 38.462 0.00 0.00 36.83 3.32
2666 6203 6.491394 CCGACTATTTGTTCAAACTTGACAA 58.509 36.000 0.00 0.00 36.83 3.18
2667 6204 5.504994 GCCGACTATTTGTTCAAACTTGACA 60.505 40.000 0.00 0.00 36.83 3.58
2668 6205 4.909880 GCCGACTATTTGTTCAAACTTGAC 59.090 41.667 0.00 0.00 36.83 3.18
2669 6206 4.576873 TGCCGACTATTTGTTCAAACTTGA 59.423 37.500 0.00 0.00 34.92 3.02
2670 6207 4.854399 TGCCGACTATTTGTTCAAACTTG 58.146 39.130 0.00 0.00 0.00 3.16
2671 6208 5.508200 TTGCCGACTATTTGTTCAAACTT 57.492 34.783 0.00 0.00 0.00 2.66
2672 6209 5.508200 TTTGCCGACTATTTGTTCAAACT 57.492 34.783 0.00 0.00 0.00 2.66
2673 6210 6.640907 AGATTTTGCCGACTATTTGTTCAAAC 59.359 34.615 0.00 0.00 0.00 2.93
2674 6211 6.744112 AGATTTTGCCGACTATTTGTTCAAA 58.256 32.000 0.44 0.44 0.00 2.69
2675 6212 6.325919 AGATTTTGCCGACTATTTGTTCAA 57.674 33.333 0.00 0.00 0.00 2.69
2676 6213 5.957842 AGATTTTGCCGACTATTTGTTCA 57.042 34.783 0.00 0.00 0.00 3.18
2677 6214 8.911247 ATAAAGATTTTGCCGACTATTTGTTC 57.089 30.769 0.00 0.00 0.00 3.18
2678 6215 8.739972 AGATAAAGATTTTGCCGACTATTTGTT 58.260 29.630 0.00 0.00 0.00 2.83
2679 6216 8.281212 AGATAAAGATTTTGCCGACTATTTGT 57.719 30.769 0.00 0.00 0.00 2.83
2680 6217 9.573133 AAAGATAAAGATTTTGCCGACTATTTG 57.427 29.630 0.00 0.00 0.00 2.32
2683 6220 8.837389 GGTAAAGATAAAGATTTTGCCGACTAT 58.163 33.333 0.00 0.00 29.26 2.12
2684 6221 8.044908 AGGTAAAGATAAAGATTTTGCCGACTA 58.955 33.333 0.00 0.00 40.23 2.59
2685 6222 6.884836 AGGTAAAGATAAAGATTTTGCCGACT 59.115 34.615 0.00 0.00 40.23 4.18
2686 6223 7.085052 AGGTAAAGATAAAGATTTTGCCGAC 57.915 36.000 0.00 0.00 40.23 4.79
2687 6224 8.044908 AGTAGGTAAAGATAAAGATTTTGCCGA 58.955 33.333 0.00 0.00 40.23 5.54
2688 6225 8.209917 AGTAGGTAAAGATAAAGATTTTGCCG 57.790 34.615 0.00 0.00 40.23 5.69
2729 6268 2.667473 AATAACGGACGACCAGAAGG 57.333 50.000 4.48 0.00 42.21 3.46
2811 6354 6.774354 TTTTTCTATCGCTCGTAACTGTTT 57.226 33.333 0.00 0.00 0.00 2.83
3125 6669 3.255397 AAGCTCCAGCACCAGCCT 61.255 61.111 0.48 0.00 45.16 4.58
3192 7837 3.994853 GCACCAAGCCAAGCCACC 61.995 66.667 0.00 0.00 37.23 4.61
3443 8095 2.342279 CGAGGCGTTCTTGGTGGA 59.658 61.111 0.00 0.00 0.00 4.02
3466 8118 2.622436 GATGGTCAAGAAAGGAGGACG 58.378 52.381 0.00 0.00 0.00 4.79
3568 8220 4.826183 CCATCCATCTTCCTCCTTTTGATC 59.174 45.833 0.00 0.00 0.00 2.92
3642 8294 1.612199 GCATCCGAGGTTGGGTAACAA 60.612 52.381 2.77 0.00 38.58 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.