Multiple sequence alignment - TraesCS6A01G247400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G247400 chr6A 100.000 4684 0 0 1 4684 459515848 459511165 0.000000e+00 8650.0
1 TraesCS6A01G247400 chr6A 89.643 589 56 4 1 586 431593697 431594283 0.000000e+00 745.0
2 TraesCS6A01G247400 chr6A 89.474 589 58 4 1 586 393522294 393521707 0.000000e+00 741.0
3 TraesCS6A01G247400 chr6A 97.738 221 5 0 3879 4099 487690129 487689909 9.510000e-102 381.0
4 TraesCS6A01G247400 chr6A 96.429 224 7 1 3880 4102 487689608 487689831 7.400000e-98 368.0
5 TraesCS6A01G247400 chr6D 95.541 2893 82 26 993 3881 321996584 321993735 0.000000e+00 4584.0
6 TraesCS6A01G247400 chr6D 85.563 568 45 21 4096 4628 321993737 321993172 1.140000e-155 560.0
7 TraesCS6A01G247400 chr6D 96.800 125 4 0 855 979 345490303 345490427 4.750000e-50 209.0
8 TraesCS6A01G247400 chr6D 88.793 116 8 4 612 722 321996780 321996665 2.270000e-28 137.0
9 TraesCS6A01G247400 chr6D 95.918 49 1 1 806 854 321996675 321996628 1.400000e-10 78.7
10 TraesCS6A01G247400 chr6B 94.297 2911 129 16 990 3881 501519897 501522789 0.000000e+00 4421.0
11 TraesCS6A01G247400 chr6B 97.115 104 3 0 4118 4221 501522798 501522901 4.820000e-40 176.0
12 TraesCS6A01G247400 chr6B 97.826 46 0 1 806 851 501519809 501519853 1.400000e-10 78.7
13 TraesCS6A01G247400 chr3A 89.983 589 55 3 1 586 674074043 674073456 0.000000e+00 758.0
14 TraesCS6A01G247400 chr3A 97.273 220 6 0 3880 4099 545885233 545885014 1.590000e-99 374.0
15 TraesCS6A01G247400 chr3A 96.818 220 7 0 3879 4098 40360356 40360137 7.400000e-98 368.0
16 TraesCS6A01G247400 chr7D 89.304 589 56 6 1 586 42177127 42176543 0.000000e+00 732.0
17 TraesCS6A01G247400 chr2B 85.520 587 79 5 1 585 58889345 58888763 4.010000e-170 608.0
18 TraesCS6A01G247400 chr5A 96.847 222 7 0 3877 4098 483329846 483329625 5.720000e-99 372.0
19 TraesCS6A01G247400 chr5A 96.804 219 7 0 3880 4098 556722149 556721931 2.660000e-97 366.0
20 TraesCS6A01G247400 chr5A 95.536 224 10 0 3879 4102 364681845 364681622 4.460000e-95 359.0
21 TraesCS6A01G247400 chr5A 97.581 124 3 0 854 977 577784192 577784069 3.670000e-51 213.0
22 TraesCS6A01G247400 chr4A 96.429 224 7 1 3875 4098 640235842 640236064 7.400000e-98 368.0
23 TraesCS6A01G247400 chr7A 96.347 219 8 0 3880 4098 401405161 401405379 1.240000e-95 361.0
24 TraesCS6A01G247400 chr7A 96.800 125 4 0 855 979 466311144 466311268 4.750000e-50 209.0
25 TraesCS6A01G247400 chr5B 98.374 123 1 1 855 977 651764281 651764402 1.020000e-51 215.0
26 TraesCS6A01G247400 chr7B 98.347 121 2 0 857 977 124022409 124022529 3.670000e-51 213.0
27 TraesCS6A01G247400 chr7B 97.561 123 3 0 855 977 714510365 714510243 1.320000e-50 211.0
28 TraesCS6A01G247400 chr3B 97.561 123 3 0 855 977 449886998 449887120 1.320000e-50 211.0
29 TraesCS6A01G247400 chr3D 96.800 125 4 0 855 979 359257840 359257716 4.750000e-50 209.0
30 TraesCS6A01G247400 chr1D 96.800 125 4 0 855 979 198197437 198197313 4.750000e-50 209.0
31 TraesCS6A01G247400 chr4D 76.316 228 51 3 292 517 389571053 389571279 8.230000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G247400 chr6A 459511165 459515848 4683 True 8650.000000 8650 100.000000 1 4684 1 chr6A.!!$R2 4683
1 TraesCS6A01G247400 chr6A 431593697 431594283 586 False 745.000000 745 89.643000 1 586 1 chr6A.!!$F1 585
2 TraesCS6A01G247400 chr6A 393521707 393522294 587 True 741.000000 741 89.474000 1 586 1 chr6A.!!$R1 585
3 TraesCS6A01G247400 chr6D 321993172 321996780 3608 True 1339.925000 4584 91.453750 612 4628 4 chr6D.!!$R1 4016
4 TraesCS6A01G247400 chr6B 501519809 501522901 3092 False 1558.566667 4421 96.412667 806 4221 3 chr6B.!!$F1 3415
5 TraesCS6A01G247400 chr3A 674073456 674074043 587 True 758.000000 758 89.983000 1 586 1 chr3A.!!$R3 585
6 TraesCS6A01G247400 chr7D 42176543 42177127 584 True 732.000000 732 89.304000 1 586 1 chr7D.!!$R1 585
7 TraesCS6A01G247400 chr2B 58888763 58889345 582 True 608.000000 608 85.520000 1 585 1 chr2B.!!$R1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 876 0.034059 CTTCTGGACACAGCTTCGGT 59.966 55.000 0.00 0.0 44.54 4.69 F
875 883 0.107831 ACACAGCTTCGGTGCCTTAA 59.892 50.000 2.73 0.0 39.87 1.85 F
907 915 0.110295 TTGGGTCACTGACATGTGGG 59.890 55.000 1.15 0.0 38.40 4.61 F
934 942 0.110295 CCTGTTGGACCCACATGTCA 59.890 55.000 0.00 0.0 36.97 3.58 F
973 981 1.133025 CCTTAAGGCACCGAAGCATTG 59.867 52.381 9.00 0.0 39.09 2.82 F
975 983 1.448985 TAAGGCACCGAAGCATTGTC 58.551 50.000 8.78 0.0 39.09 3.18 F
2004 2066 1.485480 CTCAGATGGATGGCTGTGAGT 59.515 52.381 0.00 0.0 33.90 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2117 2.521465 CCAGGTGCCAACTTGCCA 60.521 61.111 0.00 0.00 32.19 4.92 R
2258 2321 2.918712 ATCGGACTTAGCCTGGAATG 57.081 50.000 0.00 0.00 0.00 2.67 R
2286 2349 4.592351 TGGCTTCAATTCTCAAATTTGGGA 59.408 37.500 16.94 16.94 35.48 4.37 R
2470 2534 6.558394 TCAGAGAACATATCCATGGATACCAA 59.442 38.462 32.22 16.21 39.56 3.67 R
3003 3067 0.898326 TTCTGGTGCGAGCCTCACTA 60.898 55.000 0.00 0.00 34.97 2.74 R
3087 3151 4.340950 AGCAAAATTCCATTACCGGTATGG 59.659 41.667 25.40 25.40 46.41 2.74 R
3909 3974 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.597027 CGGTGGTGGACTGACAACC 60.597 63.158 0.00 0.00 31.77 3.77
73 74 0.036010 CTGACAACCGAGCTTCCCAT 60.036 55.000 0.00 0.00 0.00 4.00
74 75 0.036388 TGACAACCGAGCTTCCCATC 60.036 55.000 0.00 0.00 0.00 3.51
93 94 1.684983 TCGGCACCATAGCTAGGTTAC 59.315 52.381 10.97 7.50 37.23 2.50
108 109 5.363005 GCTAGGTTACTCCCATCTTCTGTAA 59.637 44.000 0.00 0.00 36.75 2.41
115 116 5.284582 ACTCCCATCTTCTGTAATCCTTCT 58.715 41.667 0.00 0.00 0.00 2.85
121 122 6.127225 CCATCTTCTGTAATCCTTCTCTGACA 60.127 42.308 0.00 0.00 0.00 3.58
139 140 0.752658 CATGCGGTGTCTATCTGGGA 59.247 55.000 0.00 0.00 0.00 4.37
201 202 8.048514 TCAATTCTTCCATGTCAACATCATCTA 58.951 33.333 0.00 0.00 33.61 1.98
225 226 4.175337 GCGCTGTGGCCATCCCTA 62.175 66.667 9.72 0.00 34.44 3.53
263 264 4.030913 TGGCACCAGAGTAGCTAGTATTT 58.969 43.478 0.00 0.00 0.00 1.40
276 277 8.847816 AGTAGCTAGTATTTCCCTCCTCATATA 58.152 37.037 0.00 0.00 0.00 0.86
289 290 6.263168 CCCTCCTCATATATGTTGTTGTTTCC 59.737 42.308 12.42 0.00 0.00 3.13
305 306 3.625897 CCACCACCAGAGCGACCA 61.626 66.667 0.00 0.00 0.00 4.02
377 378 4.161295 ATAGCCCAGCTCGCGCAA 62.161 61.111 8.75 0.00 40.44 4.85
440 443 3.614092 CCATGTTCCTTGTACAGATGCT 58.386 45.455 0.00 0.00 0.00 3.79
457 460 0.389817 GCTCGAGCATACCACACACA 60.390 55.000 31.91 0.00 41.59 3.72
586 590 2.428171 CCACACCCATAGAAATTGCCAG 59.572 50.000 0.00 0.00 0.00 4.85
587 591 3.355378 CACACCCATAGAAATTGCCAGA 58.645 45.455 0.00 0.00 0.00 3.86
588 592 3.763360 CACACCCATAGAAATTGCCAGAA 59.237 43.478 0.00 0.00 0.00 3.02
589 593 4.403432 CACACCCATAGAAATTGCCAGAAT 59.597 41.667 0.00 0.00 0.00 2.40
590 594 5.025453 ACACCCATAGAAATTGCCAGAATT 58.975 37.500 0.00 0.00 0.00 2.17
591 595 5.127682 ACACCCATAGAAATTGCCAGAATTC 59.872 40.000 0.00 0.00 0.00 2.17
592 596 5.361857 CACCCATAGAAATTGCCAGAATTCT 59.638 40.000 0.88 0.88 36.24 2.40
593 597 5.960202 ACCCATAGAAATTGCCAGAATTCTT 59.040 36.000 4.86 0.00 34.24 2.52
594 598 6.097412 ACCCATAGAAATTGCCAGAATTCTTC 59.903 38.462 4.86 1.30 34.24 2.87
595 599 6.097270 CCCATAGAAATTGCCAGAATTCTTCA 59.903 38.462 4.86 4.14 34.24 3.02
596 600 7.364056 CCCATAGAAATTGCCAGAATTCTTCAA 60.364 37.037 17.39 17.39 34.24 2.69
597 601 8.036575 CCATAGAAATTGCCAGAATTCTTCAAA 58.963 33.333 18.43 9.10 34.24 2.69
598 602 9.084164 CATAGAAATTGCCAGAATTCTTCAAAG 57.916 33.333 18.43 3.97 34.24 2.77
599 603 6.461640 AGAAATTGCCAGAATTCTTCAAAGG 58.538 36.000 18.43 12.36 0.00 3.11
600 604 5.813513 AATTGCCAGAATTCTTCAAAGGT 57.186 34.783 18.43 8.67 0.00 3.50
601 605 5.813513 ATTGCCAGAATTCTTCAAAGGTT 57.186 34.783 18.43 5.20 0.00 3.50
602 606 5.612725 TTGCCAGAATTCTTCAAAGGTTT 57.387 34.783 4.86 0.00 0.00 3.27
603 607 5.612725 TGCCAGAATTCTTCAAAGGTTTT 57.387 34.783 4.86 0.00 0.00 2.43
604 608 6.723298 TGCCAGAATTCTTCAAAGGTTTTA 57.277 33.333 4.86 0.00 0.00 1.52
605 609 7.118496 TGCCAGAATTCTTCAAAGGTTTTAA 57.882 32.000 4.86 0.00 0.00 1.52
606 610 7.209475 TGCCAGAATTCTTCAAAGGTTTTAAG 58.791 34.615 4.86 0.00 0.00 1.85
607 611 7.069331 TGCCAGAATTCTTCAAAGGTTTTAAGA 59.931 33.333 4.86 0.00 30.83 2.10
608 612 7.382488 GCCAGAATTCTTCAAAGGTTTTAAGAC 59.618 37.037 4.86 0.00 32.05 3.01
609 613 8.413229 CCAGAATTCTTCAAAGGTTTTAAGACA 58.587 33.333 4.86 0.00 32.05 3.41
610 614 9.237846 CAGAATTCTTCAAAGGTTTTAAGACAC 57.762 33.333 4.86 0.00 32.05 3.67
666 670 3.165071 CAAACCTAACAGGCCCTGAAAT 58.835 45.455 19.90 5.72 39.63 2.17
682 686 4.809426 CCTGAAATACGGCCTGTAGTTAAG 59.191 45.833 17.95 17.95 41.13 1.85
687 691 7.608761 TGAAATACGGCCTGTAGTTAAGAATTT 59.391 33.333 16.45 9.26 41.13 1.82
694 698 5.123979 GCCTGTAGTTAAGAATTTGGGACAG 59.876 44.000 0.00 0.00 42.39 3.51
708 716 2.292521 TGGGACAGAGGTTCAGCTCTAT 60.293 50.000 8.19 0.00 0.00 1.98
710 718 3.431486 GGGACAGAGGTTCAGCTCTATTG 60.431 52.174 8.19 0.85 0.00 1.90
712 720 2.503356 ACAGAGGTTCAGCTCTATTGGG 59.497 50.000 8.19 0.00 0.00 4.12
713 721 1.488393 AGAGGTTCAGCTCTATTGGGC 59.512 52.381 6.75 0.00 0.00 5.36
714 722 0.179000 AGGTTCAGCTCTATTGGGCG 59.821 55.000 0.00 0.00 0.00 6.13
715 723 0.815615 GGTTCAGCTCTATTGGGCGG 60.816 60.000 0.00 0.00 0.00 6.13
716 724 0.815615 GTTCAGCTCTATTGGGCGGG 60.816 60.000 0.00 0.00 0.00 6.13
717 725 1.983119 TTCAGCTCTATTGGGCGGGG 61.983 60.000 0.00 0.00 0.00 5.73
718 726 2.040884 AGCTCTATTGGGCGGGGA 60.041 61.111 0.00 0.00 0.00 4.81
719 727 2.111251 GCTCTATTGGGCGGGGAC 59.889 66.667 0.00 0.00 0.00 4.46
737 745 4.750598 GGGGACGATTTAGTCATTTAGAGC 59.249 45.833 0.00 0.00 42.62 4.09
738 746 5.453480 GGGGACGATTTAGTCATTTAGAGCT 60.453 44.000 0.00 0.00 42.62 4.09
739 747 6.049790 GGGACGATTTAGTCATTTAGAGCTT 58.950 40.000 0.00 0.00 42.62 3.74
740 748 6.201234 GGGACGATTTAGTCATTTAGAGCTTC 59.799 42.308 0.00 0.00 42.62 3.86
741 749 6.201234 GGACGATTTAGTCATTTAGAGCTTCC 59.799 42.308 0.00 0.00 42.62 3.46
742 750 6.049790 ACGATTTAGTCATTTAGAGCTTCCC 58.950 40.000 0.00 0.00 0.00 3.97
743 751 6.049149 CGATTTAGTCATTTAGAGCTTCCCA 58.951 40.000 0.00 0.00 0.00 4.37
744 752 6.201806 CGATTTAGTCATTTAGAGCTTCCCAG 59.798 42.308 0.00 0.00 0.00 4.45
754 762 3.393970 CTTCCCAGCCCTCGCAGA 61.394 66.667 0.00 0.00 37.52 4.26
755 763 2.688666 TTCCCAGCCCTCGCAGAT 60.689 61.111 0.00 0.00 37.52 2.90
756 764 2.657102 CTTCCCAGCCCTCGCAGATC 62.657 65.000 0.00 0.00 37.52 2.75
757 765 3.473647 CCCAGCCCTCGCAGATCA 61.474 66.667 0.00 0.00 37.52 2.92
758 766 2.586245 CCAGCCCTCGCAGATCAA 59.414 61.111 0.00 0.00 37.52 2.57
759 767 1.817099 CCAGCCCTCGCAGATCAAC 60.817 63.158 0.00 0.00 37.52 3.18
760 768 1.220206 CAGCCCTCGCAGATCAACT 59.780 57.895 0.00 0.00 37.52 3.16
761 769 0.809241 CAGCCCTCGCAGATCAACTC 60.809 60.000 0.00 0.00 37.52 3.01
762 770 0.975040 AGCCCTCGCAGATCAACTCT 60.975 55.000 0.00 0.00 37.52 3.24
763 771 0.747255 GCCCTCGCAGATCAACTCTA 59.253 55.000 0.00 0.00 33.89 2.43
764 772 1.137086 GCCCTCGCAGATCAACTCTAA 59.863 52.381 0.00 0.00 33.89 2.10
765 773 2.224161 GCCCTCGCAGATCAACTCTAAT 60.224 50.000 0.00 0.00 33.89 1.73
766 774 3.742640 GCCCTCGCAGATCAACTCTAATT 60.743 47.826 0.00 0.00 33.89 1.40
767 775 3.806521 CCCTCGCAGATCAACTCTAATTG 59.193 47.826 0.00 0.00 33.89 2.32
768 776 3.806521 CCTCGCAGATCAACTCTAATTGG 59.193 47.826 0.00 0.00 33.89 3.16
769 777 3.797039 TCGCAGATCAACTCTAATTGGG 58.203 45.455 0.00 0.00 31.13 4.12
770 778 2.289002 CGCAGATCAACTCTAATTGGGC 59.711 50.000 0.00 0.00 31.13 5.36
771 779 3.549794 GCAGATCAACTCTAATTGGGCT 58.450 45.455 0.00 0.00 31.13 5.19
772 780 3.314635 GCAGATCAACTCTAATTGGGCTG 59.685 47.826 0.00 0.00 35.78 4.85
773 781 3.881688 CAGATCAACTCTAATTGGGCTGG 59.118 47.826 0.00 0.00 32.37 4.85
774 782 2.806945 TCAACTCTAATTGGGCTGGG 57.193 50.000 0.00 0.00 0.00 4.45
775 783 2.274542 TCAACTCTAATTGGGCTGGGA 58.725 47.619 0.00 0.00 0.00 4.37
776 784 2.026262 TCAACTCTAATTGGGCTGGGAC 60.026 50.000 0.00 0.00 0.00 4.46
777 785 0.541863 ACTCTAATTGGGCTGGGACG 59.458 55.000 0.00 0.00 0.00 4.79
778 786 0.830648 CTCTAATTGGGCTGGGACGA 59.169 55.000 0.00 0.00 0.00 4.20
779 787 0.539986 TCTAATTGGGCTGGGACGAC 59.460 55.000 0.00 0.00 0.00 4.34
780 788 0.463833 CTAATTGGGCTGGGACGACC 60.464 60.000 0.00 0.00 40.81 4.79
791 799 3.407443 GGACGACCCCTCAAAACAA 57.593 52.632 0.00 0.00 0.00 2.83
792 800 1.682740 GGACGACCCCTCAAAACAAA 58.317 50.000 0.00 0.00 0.00 2.83
793 801 2.025898 GGACGACCCCTCAAAACAAAA 58.974 47.619 0.00 0.00 0.00 2.44
794 802 2.427812 GGACGACCCCTCAAAACAAAAA 59.572 45.455 0.00 0.00 0.00 1.94
840 848 3.499918 CACTGATCTGCGAGGAAGTTTTT 59.500 43.478 0.00 0.00 0.00 1.94
841 849 4.690748 CACTGATCTGCGAGGAAGTTTTTA 59.309 41.667 0.00 0.00 0.00 1.52
843 851 5.940470 ACTGATCTGCGAGGAAGTTTTTATT 59.060 36.000 0.00 0.00 0.00 1.40
844 852 6.092807 ACTGATCTGCGAGGAAGTTTTTATTC 59.907 38.462 0.00 0.00 0.00 1.75
845 853 4.921470 TCTGCGAGGAAGTTTTTATTCG 57.079 40.909 0.00 0.00 0.00 3.34
846 854 3.682858 TCTGCGAGGAAGTTTTTATTCGG 59.317 43.478 0.00 0.00 0.00 4.30
847 855 2.160813 TGCGAGGAAGTTTTTATTCGGC 59.839 45.455 0.00 0.00 0.00 5.54
848 856 2.477357 GCGAGGAAGTTTTTATTCGGCC 60.477 50.000 0.00 0.00 0.00 6.13
849 857 2.096980 CGAGGAAGTTTTTATTCGGCCC 59.903 50.000 0.00 0.00 0.00 5.80
850 858 3.353557 GAGGAAGTTTTTATTCGGCCCT 58.646 45.455 0.00 0.00 0.00 5.19
851 859 3.762288 GAGGAAGTTTTTATTCGGCCCTT 59.238 43.478 0.00 0.00 0.00 3.95
852 860 3.762288 AGGAAGTTTTTATTCGGCCCTTC 59.238 43.478 0.00 0.16 0.00 3.46
853 861 3.762288 GGAAGTTTTTATTCGGCCCTTCT 59.238 43.478 0.00 0.00 0.00 2.85
854 862 4.380550 GGAAGTTTTTATTCGGCCCTTCTG 60.381 45.833 0.00 0.00 0.00 3.02
855 863 3.089284 AGTTTTTATTCGGCCCTTCTGG 58.911 45.455 0.00 0.00 37.09 3.86
856 864 3.086282 GTTTTTATTCGGCCCTTCTGGA 58.914 45.455 0.00 0.00 35.39 3.86
857 865 2.413310 TTTATTCGGCCCTTCTGGAC 57.587 50.000 0.00 0.00 39.70 4.02
858 866 1.281419 TTATTCGGCCCTTCTGGACA 58.719 50.000 0.00 0.00 45.87 4.02
859 867 0.539986 TATTCGGCCCTTCTGGACAC 59.460 55.000 0.00 0.00 45.87 3.67
860 868 1.488705 ATTCGGCCCTTCTGGACACA 61.489 55.000 0.00 0.00 45.87 3.72
861 869 2.046892 CGGCCCTTCTGGACACAG 60.047 66.667 0.00 0.00 45.87 3.66
862 870 2.360475 GGCCCTTCTGGACACAGC 60.360 66.667 0.00 0.00 44.36 4.40
863 871 2.753029 GCCCTTCTGGACACAGCT 59.247 61.111 0.00 0.00 44.54 4.24
864 872 1.073897 GCCCTTCTGGACACAGCTT 59.926 57.895 0.00 0.00 44.54 3.74
865 873 0.957888 GCCCTTCTGGACACAGCTTC 60.958 60.000 0.00 0.00 44.54 3.86
866 874 0.671781 CCCTTCTGGACACAGCTTCG 60.672 60.000 0.00 0.00 44.54 3.79
867 875 0.671781 CCTTCTGGACACAGCTTCGG 60.672 60.000 0.00 0.00 44.54 4.30
868 876 0.034059 CTTCTGGACACAGCTTCGGT 59.966 55.000 0.00 0.00 44.54 4.69
869 877 0.249868 TTCTGGACACAGCTTCGGTG 60.250 55.000 1.32 1.32 44.54 4.94
870 878 2.280797 TGGACACAGCTTCGGTGC 60.281 61.111 2.73 0.00 39.87 5.01
871 879 3.050275 GGACACAGCTTCGGTGCC 61.050 66.667 2.73 2.38 39.87 5.01
872 880 2.031163 GACACAGCTTCGGTGCCT 59.969 61.111 2.73 0.00 39.87 4.75
873 881 1.598130 GACACAGCTTCGGTGCCTT 60.598 57.895 2.73 0.00 39.87 4.35
874 882 0.320421 GACACAGCTTCGGTGCCTTA 60.320 55.000 2.73 0.00 39.87 2.69
875 883 0.107831 ACACAGCTTCGGTGCCTTAA 59.892 50.000 2.73 0.00 39.87 1.85
876 884 1.234821 CACAGCTTCGGTGCCTTAAA 58.765 50.000 0.00 0.00 34.04 1.52
877 885 1.197721 CACAGCTTCGGTGCCTTAAAG 59.802 52.381 0.00 0.00 34.04 1.85
878 886 0.804989 CAGCTTCGGTGCCTTAAAGG 59.195 55.000 0.00 0.00 38.80 3.11
895 903 2.203480 GCACCTGCCTTTGGGTCA 60.203 61.111 0.00 0.00 32.95 4.02
896 904 2.564721 GCACCTGCCTTTGGGTCAC 61.565 63.158 0.00 0.00 32.95 3.67
897 905 1.151450 CACCTGCCTTTGGGTCACT 59.849 57.895 0.00 0.00 32.95 3.41
898 906 1.151450 ACCTGCCTTTGGGTCACTG 59.849 57.895 0.00 0.00 34.45 3.66
899 907 1.352622 ACCTGCCTTTGGGTCACTGA 61.353 55.000 0.00 0.00 34.45 3.41
900 908 0.890996 CCTGCCTTTGGGTCACTGAC 60.891 60.000 0.00 0.00 34.45 3.51
901 909 0.179020 CTGCCTTTGGGTCACTGACA 60.179 55.000 11.34 0.00 33.68 3.58
902 910 0.478072 TGCCTTTGGGTCACTGACAT 59.522 50.000 11.34 0.00 33.68 3.06
903 911 0.883833 GCCTTTGGGTCACTGACATG 59.116 55.000 11.34 0.00 33.68 3.21
904 912 1.819305 GCCTTTGGGTCACTGACATGT 60.819 52.381 11.34 0.00 33.68 3.21
905 913 1.881973 CCTTTGGGTCACTGACATGTG 59.118 52.381 1.15 0.00 39.15 3.21
906 914 1.881973 CTTTGGGTCACTGACATGTGG 59.118 52.381 1.15 0.00 38.40 4.17
907 915 0.110295 TTGGGTCACTGACATGTGGG 59.890 55.000 1.15 0.00 38.40 4.61
908 916 1.059584 TGGGTCACTGACATGTGGGT 61.060 55.000 1.15 0.00 38.40 4.51
909 917 0.321653 GGGTCACTGACATGTGGGTC 60.322 60.000 1.15 0.00 38.40 4.46
910 918 0.396435 GGTCACTGACATGTGGGTCA 59.604 55.000 1.15 0.00 45.06 4.02
914 922 3.573673 TGACATGTGGGTCAGCCA 58.426 55.556 1.15 0.00 42.56 4.75
915 923 1.073025 TGACATGTGGGTCAGCCAC 59.927 57.895 19.79 19.79 42.56 5.01
916 924 1.675641 GACATGTGGGTCAGCCACC 60.676 63.158 23.42 3.81 45.97 4.61
917 925 2.129555 GACATGTGGGTCAGCCACCT 62.130 60.000 23.42 11.06 45.95 4.00
918 926 1.676635 CATGTGGGTCAGCCACCTG 60.677 63.158 23.42 19.40 45.95 4.00
919 927 2.156098 ATGTGGGTCAGCCACCTGT 61.156 57.895 23.42 6.71 45.95 4.00
920 928 1.719063 ATGTGGGTCAGCCACCTGTT 61.719 55.000 23.42 2.89 45.95 3.16
921 929 1.898574 GTGGGTCAGCCACCTGTTG 60.899 63.158 15.75 0.00 45.95 3.33
931 939 2.644887 CACCTGTTGGACCCACATG 58.355 57.895 0.00 0.00 37.04 3.21
932 940 0.178992 CACCTGTTGGACCCACATGT 60.179 55.000 0.00 0.00 37.04 3.21
933 941 0.110486 ACCTGTTGGACCCACATGTC 59.890 55.000 0.00 0.00 37.04 3.06
934 942 0.110295 CCTGTTGGACCCACATGTCA 59.890 55.000 0.00 0.00 36.97 3.58
935 943 1.272092 CCTGTTGGACCCACATGTCAT 60.272 52.381 0.00 0.00 36.97 3.06
936 944 2.026356 CCTGTTGGACCCACATGTCATA 60.026 50.000 0.00 0.00 36.97 2.15
937 945 3.273434 CTGTTGGACCCACATGTCATAG 58.727 50.000 0.00 0.00 36.97 2.23
938 946 2.909662 TGTTGGACCCACATGTCATAGA 59.090 45.455 0.00 0.00 36.97 1.98
939 947 3.270877 GTTGGACCCACATGTCATAGAC 58.729 50.000 0.00 0.00 36.97 2.59
940 948 2.545810 TGGACCCACATGTCATAGACA 58.454 47.619 0.00 1.95 46.90 3.41
941 949 2.236146 TGGACCCACATGTCATAGACAC 59.764 50.000 0.00 0.00 45.65 3.67
942 950 2.236146 GGACCCACATGTCATAGACACA 59.764 50.000 0.00 0.00 45.65 3.72
943 951 3.307410 GGACCCACATGTCATAGACACAA 60.307 47.826 0.00 0.00 45.65 3.33
944 952 4.323417 GACCCACATGTCATAGACACAAA 58.677 43.478 0.00 0.00 45.65 2.83
945 953 4.326826 ACCCACATGTCATAGACACAAAG 58.673 43.478 0.00 0.00 45.65 2.77
946 954 3.691118 CCCACATGTCATAGACACAAAGG 59.309 47.826 0.00 3.02 45.65 3.11
947 955 4.326826 CCACATGTCATAGACACAAAGGT 58.673 43.478 0.00 0.00 45.65 3.50
948 956 5.487433 CCACATGTCATAGACACAAAGGTA 58.513 41.667 0.00 0.00 45.65 3.08
949 957 5.582269 CCACATGTCATAGACACAAAGGTAG 59.418 44.000 0.00 0.00 45.65 3.18
950 958 5.582269 CACATGTCATAGACACAAAGGTAGG 59.418 44.000 0.00 0.00 45.65 3.18
951 959 5.248477 ACATGTCATAGACACAAAGGTAGGT 59.752 40.000 1.43 0.00 45.65 3.08
952 960 5.147330 TGTCATAGACACAAAGGTAGGTG 57.853 43.478 0.00 0.00 37.67 4.00
953 961 3.933332 GTCATAGACACAAAGGTAGGTGC 59.067 47.826 0.00 0.00 38.57 5.01
954 962 3.055385 TCATAGACACAAAGGTAGGTGCC 60.055 47.826 0.00 0.00 38.57 5.01
955 963 1.435256 AGACACAAAGGTAGGTGCCT 58.565 50.000 0.00 0.00 41.41 4.75
956 964 8.698451 GTCATAGACACAAAGGTAGGTGCCTT 62.698 46.154 0.00 0.00 40.22 4.35
957 965 9.411999 GTCATAGACACAAAGGTAGGTGCCTTA 62.412 44.444 0.00 0.00 38.91 2.69
970 978 4.713946 CCTTAAGGCACCGAAGCA 57.286 55.556 9.00 0.00 35.83 3.91
971 979 3.175133 CCTTAAGGCACCGAAGCAT 57.825 52.632 9.00 0.00 35.83 3.79
972 980 1.463674 CCTTAAGGCACCGAAGCATT 58.536 50.000 9.00 4.53 41.80 3.56
973 981 1.133025 CCTTAAGGCACCGAAGCATTG 59.867 52.381 9.00 0.00 39.09 2.82
974 982 1.812571 CTTAAGGCACCGAAGCATTGT 59.187 47.619 8.78 0.00 39.09 2.71
975 983 1.448985 TAAGGCACCGAAGCATTGTC 58.551 50.000 8.78 0.00 39.09 3.18
1228 1273 3.805267 CGGACTACTACGACCGCT 58.195 61.111 0.00 0.00 38.98 5.52
1421 1467 4.034048 GGCATTAGGTTGTCTGTGTTATCG 59.966 45.833 0.00 0.00 0.00 2.92
1456 1502 6.415573 AGGAGTAATGGATTGTTTGGTAGTC 58.584 40.000 0.00 0.00 0.00 2.59
1680 1727 9.415544 GTTCATGAAAAGAATGCTCTAATTGTT 57.584 29.630 10.35 0.00 0.00 2.83
1857 1906 5.626955 GCAACAAAAAGATGTCTCTAGTTGC 59.373 40.000 17.99 17.99 42.28 4.17
1947 2009 6.126739 GGTAGAGAACTAGGGAATGAATGGTT 60.127 42.308 0.00 0.00 0.00 3.67
2004 2066 1.485480 CTCAGATGGATGGCTGTGAGT 59.515 52.381 0.00 0.00 33.90 3.41
2011 2073 3.877559 TGGATGGCTGTGAGTTAGATTG 58.122 45.455 0.00 0.00 0.00 2.67
2055 2117 7.060383 AGTAGATGCTGTTGTTATGAGCTAT 57.940 36.000 0.00 0.00 33.66 2.97
2258 2321 4.633126 TCTGCTGTCTTAATGATTCAGTGC 59.367 41.667 0.00 0.00 0.00 4.40
2286 2349 5.357032 CCAGGCTAAGTCCGATTTGTTTATT 59.643 40.000 0.00 0.00 0.00 1.40
2470 2534 8.313292 TCTCATTTTATTGCATTGTTTAAGGCT 58.687 29.630 0.00 0.00 43.58 4.58
2785 2849 9.781834 TTTAACAGTAAGATTGTTTTCAGTGTG 57.218 29.630 0.00 0.00 39.36 3.82
3087 3151 3.998341 ACATGCATTGGAATGAAAACAGC 59.002 39.130 0.00 0.00 38.70 4.40
3111 3175 5.533154 CCATACCGGTAATGGAATTTTGCTA 59.467 40.000 26.44 1.70 37.87 3.49
3345 3409 5.913137 TGGTTTCAACTTTCAACTGTGAT 57.087 34.783 0.00 0.00 32.48 3.06
3348 3412 8.006298 TGGTTTCAACTTTCAACTGTGATTAT 57.994 30.769 0.00 0.00 32.48 1.28
3525 3589 8.065473 TCTGAAATTTGCAAGGCATCTTATAA 57.935 30.769 0.00 0.00 38.76 0.98
3526 3590 8.698210 TCTGAAATTTGCAAGGCATCTTATAAT 58.302 29.630 0.00 0.00 38.76 1.28
3527 3591 9.970395 CTGAAATTTGCAAGGCATCTTATAATA 57.030 29.630 0.00 0.00 38.76 0.98
3692 3756 5.924825 GGTGAAGTGTAGTTAACGAGTGATT 59.075 40.000 0.00 0.00 0.00 2.57
3701 3765 8.186163 TGTAGTTAACGAGTGATTACCATACAG 58.814 37.037 0.00 0.00 0.00 2.74
3746 3810 1.064758 TGGTTCTATGCGGCCTTGATT 60.065 47.619 0.00 0.00 0.00 2.57
3838 3903 1.172812 GCGTTTCCCTTCCAGTTGCT 61.173 55.000 0.00 0.00 0.00 3.91
3841 3906 1.882623 GTTTCCCTTCCAGTTGCTCTG 59.117 52.381 3.18 3.18 43.27 3.35
3857 3922 3.058983 TGCTCTGCTCACATTTTGTTACG 60.059 43.478 0.00 0.00 0.00 3.18
3869 3934 8.561212 TCACATTTTGTTACGTTATTTACTGCT 58.439 29.630 0.00 0.00 0.00 4.24
3881 3946 6.959311 CGTTATTTACTGCTGATTGTTGGTAC 59.041 38.462 0.00 0.00 0.00 3.34
3882 3947 7.148474 CGTTATTTACTGCTGATTGTTGGTACT 60.148 37.037 0.00 0.00 0.00 2.73
3884 3949 7.611213 ATTTACTGCTGATTGTTGGTACTAC 57.389 36.000 0.00 0.00 0.00 2.73
3885 3950 3.939066 ACTGCTGATTGTTGGTACTACC 58.061 45.455 0.00 0.00 39.22 3.18
3886 3951 3.583086 ACTGCTGATTGTTGGTACTACCT 59.417 43.478 6.79 0.00 39.58 3.08
3887 3952 4.184629 CTGCTGATTGTTGGTACTACCTC 58.815 47.826 6.79 1.30 39.58 3.85
3888 3953 3.055385 TGCTGATTGTTGGTACTACCTCC 60.055 47.826 6.79 0.00 39.58 4.30
3890 3955 3.167485 TGATTGTTGGTACTACCTCCGT 58.833 45.455 6.79 0.00 39.58 4.69
3891 3956 3.579586 TGATTGTTGGTACTACCTCCGTT 59.420 43.478 6.79 0.00 39.58 4.44
3892 3957 4.040706 TGATTGTTGGTACTACCTCCGTTT 59.959 41.667 6.79 0.00 39.58 3.60
3893 3958 3.665745 TGTTGGTACTACCTCCGTTTC 57.334 47.619 6.79 0.00 39.58 2.78
3894 3959 2.964464 TGTTGGTACTACCTCCGTTTCA 59.036 45.455 6.79 0.00 39.58 2.69
3895 3960 3.006110 TGTTGGTACTACCTCCGTTTCAG 59.994 47.826 6.79 0.00 39.58 3.02
3896 3961 2.880443 TGGTACTACCTCCGTTTCAGT 58.120 47.619 6.79 0.00 39.58 3.41
3897 3962 3.233507 TGGTACTACCTCCGTTTCAGTT 58.766 45.455 6.79 0.00 39.58 3.16
3898 3963 3.642848 TGGTACTACCTCCGTTTCAGTTT 59.357 43.478 6.79 0.00 39.58 2.66
3899 3964 4.832266 TGGTACTACCTCCGTTTCAGTTTA 59.168 41.667 6.79 0.00 39.58 2.01
3900 3965 5.164233 GGTACTACCTCCGTTTCAGTTTAC 58.836 45.833 0.00 0.00 34.73 2.01
3901 3966 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
3902 3967 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
3903 3968 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
3904 3969 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
3905 3970 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
3906 3971 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
3907 3972 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
3908 3973 5.510179 CCTCCGTTTCAGTTTACAAGTCCTA 60.510 44.000 0.00 0.00 0.00 2.94
3909 3974 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
3910 3975 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
3911 3976 4.375706 CGTTTCAGTTTACAAGTCCTACGC 60.376 45.833 0.00 0.00 0.00 4.42
3912 3977 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
3913 3978 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
3914 3979 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
3915 3980 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
3916 3981 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
3917 3982 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
3918 3983 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
3919 3984 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
3920 3985 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
3921 3986 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
3922 3987 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
3923 3988 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
3924 3989 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
3925 3990 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
3926 3991 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
3927 3992 0.386838 ACGCGTATACCTAGGTTGCC 59.613 55.000 22.11 7.02 0.00 4.52
3928 3993 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
3929 3994 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
3930 3995 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
3931 3996 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
3932 3997 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
3933 3998 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
3934 3999 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
3935 4000 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
3936 4001 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
3937 4002 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
3938 4003 9.297037 GTATACCTAGGTTGCCAATTTTATCAT 57.703 33.333 22.11 4.48 0.00 2.45
3939 4004 6.715347 ACCTAGGTTGCCAATTTTATCATC 57.285 37.500 9.21 0.00 0.00 2.92
3940 4005 6.435164 ACCTAGGTTGCCAATTTTATCATCT 58.565 36.000 9.21 0.00 0.00 2.90
3941 4006 6.897413 ACCTAGGTTGCCAATTTTATCATCTT 59.103 34.615 9.21 0.00 0.00 2.40
3942 4007 7.068716 ACCTAGGTTGCCAATTTTATCATCTTC 59.931 37.037 9.21 0.00 0.00 2.87
3943 4008 6.855763 AGGTTGCCAATTTTATCATCTTCA 57.144 33.333 0.00 0.00 0.00 3.02
3944 4009 7.427989 AGGTTGCCAATTTTATCATCTTCAT 57.572 32.000 0.00 0.00 0.00 2.57
3945 4010 8.537728 AGGTTGCCAATTTTATCATCTTCATA 57.462 30.769 0.00 0.00 0.00 2.15
3946 4011 9.151177 AGGTTGCCAATTTTATCATCTTCATAT 57.849 29.630 0.00 0.00 0.00 1.78
3993 4058 8.786826 ATACGGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
3994 4059 7.504924 ACGGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
3995 4060 7.584987 ACGGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
3996 4061 7.228706 ACGGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
3997 4062 8.076178 CGGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
3998 4063 9.750125 GGTTTGAAAATAGAACATCTGAAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
4047 4112 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
4048 4113 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
4049 4114 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
4050 4115 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
4051 4116 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
4062 4127 2.930682 GTCAAATTGACGACCTAGGAGC 59.069 50.000 17.98 6.03 37.67 4.70
4063 4128 2.565391 TCAAATTGACGACCTAGGAGCA 59.435 45.455 17.98 8.59 0.00 4.26
4064 4129 2.673368 CAAATTGACGACCTAGGAGCAC 59.327 50.000 17.98 4.87 0.00 4.40
4065 4130 0.456221 ATTGACGACCTAGGAGCACG 59.544 55.000 17.98 16.64 0.00 5.34
4066 4131 2.102553 GACGACCTAGGAGCACGC 59.897 66.667 17.98 8.07 0.00 5.34
4067 4132 3.736482 GACGACCTAGGAGCACGCG 62.736 68.421 17.98 3.53 0.00 6.01
4068 4133 3.812019 CGACCTAGGAGCACGCGT 61.812 66.667 17.98 5.58 0.00 6.01
4069 4134 2.466982 CGACCTAGGAGCACGCGTA 61.467 63.158 17.98 0.00 0.00 4.42
4070 4135 1.063811 GACCTAGGAGCACGCGTAC 59.936 63.158 17.98 6.32 0.00 3.67
4072 4137 2.651232 CTAGGAGCACGCGTACGC 60.651 66.667 29.83 29.83 45.53 4.42
4073 4138 4.183686 TAGGAGCACGCGTACGCC 62.184 66.667 32.64 22.99 45.53 5.68
4076 4141 4.183686 GAGCACGCGTACGCCCTA 62.184 66.667 32.64 0.00 45.53 3.53
4077 4142 3.480225 GAGCACGCGTACGCCCTAT 62.480 63.158 32.64 17.56 45.53 2.57
4078 4143 2.121564 GAGCACGCGTACGCCCTATA 62.122 60.000 32.64 0.00 45.53 1.31
4079 4144 1.299316 GCACGCGTACGCCCTATAA 60.299 57.895 32.64 0.00 45.53 0.98
4080 4145 0.871163 GCACGCGTACGCCCTATAAA 60.871 55.000 32.64 0.00 45.53 1.40
4081 4146 0.848305 CACGCGTACGCCCTATAAAC 59.152 55.000 32.64 4.17 45.53 2.01
4082 4147 0.740737 ACGCGTACGCCCTATAAACT 59.259 50.000 32.64 2.80 45.53 2.66
4083 4148 1.126079 CGCGTACGCCCTATAAACTG 58.874 55.000 32.64 12.05 37.98 3.16
4084 4149 1.268692 CGCGTACGCCCTATAAACTGA 60.269 52.381 32.64 0.00 37.98 3.41
4085 4150 2.391879 GCGTACGCCCTATAAACTGAG 58.608 52.381 29.51 0.00 34.56 3.35
4086 4151 2.033801 GCGTACGCCCTATAAACTGAGA 59.966 50.000 29.51 0.00 34.56 3.27
4087 4152 3.852572 GCGTACGCCCTATAAACTGAGAG 60.853 52.174 29.51 0.00 34.56 3.20
4088 4153 3.562973 CGTACGCCCTATAAACTGAGAGA 59.437 47.826 0.52 0.00 0.00 3.10
4089 4154 4.319622 CGTACGCCCTATAAACTGAGAGAG 60.320 50.000 0.52 0.00 0.00 3.20
4090 4155 3.899726 ACGCCCTATAAACTGAGAGAGA 58.100 45.455 0.00 0.00 0.00 3.10
4091 4156 3.886505 ACGCCCTATAAACTGAGAGAGAG 59.113 47.826 0.00 0.00 0.00 3.20
4092 4157 3.254657 CGCCCTATAAACTGAGAGAGAGG 59.745 52.174 0.00 0.00 0.00 3.69
4093 4158 4.219919 GCCCTATAAACTGAGAGAGAGGT 58.780 47.826 0.00 0.00 0.00 3.85
4094 4159 5.386924 GCCCTATAAACTGAGAGAGAGGTA 58.613 45.833 0.00 0.00 0.00 3.08
4095 4160 5.475564 GCCCTATAAACTGAGAGAGAGGTAG 59.524 48.000 0.00 0.00 0.00 3.18
4096 4161 6.607019 CCCTATAAACTGAGAGAGAGGTAGT 58.393 44.000 0.00 0.00 0.00 2.73
4097 4162 7.692289 GCCCTATAAACTGAGAGAGAGGTAGTA 60.692 44.444 0.00 0.00 0.00 1.82
4098 4163 8.219178 CCCTATAAACTGAGAGAGAGGTAGTAA 58.781 40.741 0.00 0.00 0.00 2.24
4099 4164 9.629878 CCTATAAACTGAGAGAGAGGTAGTAAA 57.370 37.037 0.00 0.00 0.00 2.01
4104 4169 8.423906 AACTGAGAGAGAGGTAGTAAAATTGA 57.576 34.615 0.00 0.00 0.00 2.57
4105 4170 8.602472 ACTGAGAGAGAGGTAGTAAAATTGAT 57.398 34.615 0.00 0.00 0.00 2.57
4106 4171 8.474025 ACTGAGAGAGAGGTAGTAAAATTGATG 58.526 37.037 0.00 0.00 0.00 3.07
4107 4172 8.367660 TGAGAGAGAGGTAGTAAAATTGATGT 57.632 34.615 0.00 0.00 0.00 3.06
4111 4176 8.079211 AGAGAGGTAGTAAAATTGATGTAGCA 57.921 34.615 0.00 0.00 0.00 3.49
4134 4199 2.929043 AGGGGACATTCTTGGGAAGATT 59.071 45.455 0.00 0.00 37.38 2.40
4162 4227 0.034960 TGCGGCAAGTGGGCTTATAA 60.035 50.000 0.00 0.00 40.61 0.98
4268 4333 6.319911 CCTCAAAAGAAGAAAAGAAGTCTGGT 59.680 38.462 0.00 0.00 0.00 4.00
4269 4334 7.321745 TCAAAAGAAGAAAAGAAGTCTGGTC 57.678 36.000 0.00 0.00 0.00 4.02
4279 4344 2.943033 AGAAGTCTGGTCACAAAAACCG 59.057 45.455 0.00 0.00 39.81 4.44
4303 4368 6.682863 CGAAGTTTGTTTCTGTCTTGTTGTAG 59.317 38.462 0.00 0.00 0.00 2.74
4306 4371 7.971455 AGTTTGTTTCTGTCTTGTTGTAGTAC 58.029 34.615 0.00 0.00 0.00 2.73
4308 4373 7.534085 TTGTTTCTGTCTTGTTGTAGTACTG 57.466 36.000 5.39 0.00 0.00 2.74
4314 4379 5.853936 TGTCTTGTTGTAGTACTGCTCAAT 58.146 37.500 12.42 0.00 0.00 2.57
4316 4381 6.866770 TGTCTTGTTGTAGTACTGCTCAATAC 59.133 38.462 12.42 16.82 0.00 1.89
4323 4388 6.403878 TGTAGTACTGCTCAATACCTTTTCC 58.596 40.000 12.42 0.00 0.00 3.13
4354 4419 6.798959 GCTTCTTAGCTGTTTTCACAAGTATG 59.201 38.462 0.00 0.00 44.27 2.39
4355 4420 6.241207 TCTTAGCTGTTTTCACAAGTATGC 57.759 37.500 0.00 0.00 30.36 3.14
4359 4424 4.339247 AGCTGTTTTCACAAGTATGCAACT 59.661 37.500 0.00 0.00 41.49 3.16
4361 4426 5.574891 TGTTTTCACAAGTATGCAACTGT 57.425 34.783 0.00 0.00 38.88 3.55
4368 4433 7.503521 TCACAAGTATGCAACTGTCATTTTA 57.496 32.000 0.00 0.00 38.88 1.52
4370 4435 8.409371 TCACAAGTATGCAACTGTCATTTTAAA 58.591 29.630 0.00 0.00 38.88 1.52
4406 4500 4.712337 TGTAATTTGAGGTTGGTTTGTGGT 59.288 37.500 0.00 0.00 0.00 4.16
4413 4507 4.582656 TGAGGTTGGTTTGTGGTTAGAATG 59.417 41.667 0.00 0.00 0.00 2.67
4438 4533 5.800296 TGTGTAACAGGCTGCTAAATAAGA 58.200 37.500 15.89 0.00 45.67 2.10
4439 4534 5.642063 TGTGTAACAGGCTGCTAAATAAGAC 59.358 40.000 15.89 0.00 45.67 3.01
4448 4543 4.459337 GCTGCTAAATAAGACACAAAGGGT 59.541 41.667 0.00 0.00 0.00 4.34
4449 4544 5.392057 GCTGCTAAATAAGACACAAAGGGTC 60.392 44.000 0.00 0.00 35.50 4.46
4450 4545 5.626142 TGCTAAATAAGACACAAAGGGTCA 58.374 37.500 1.90 0.00 37.74 4.02
4453 4548 6.861572 GCTAAATAAGACACAAAGGGTCAAAC 59.138 38.462 1.90 0.00 37.74 2.93
4454 4549 5.784578 AATAAGACACAAAGGGTCAAACC 57.215 39.130 1.90 0.00 37.74 3.27
4455 4550 3.382083 AAGACACAAAGGGTCAAACCT 57.618 42.857 1.90 0.00 44.56 3.50
4456 4551 2.654863 AGACACAAAGGGTCAAACCTG 58.345 47.619 1.90 0.00 40.87 4.00
4457 4552 1.681264 GACACAAAGGGTCAAACCTGG 59.319 52.381 0.00 0.00 40.87 4.45
4478 4575 3.070015 GGGGTTTGATCATTAATGGGCTG 59.930 47.826 15.36 0.00 0.00 4.85
4480 4577 4.038402 GGGTTTGATCATTAATGGGCTGAG 59.962 45.833 15.36 0.00 0.00 3.35
4492 4589 1.555075 TGGGCTGAGGTACAATCACTC 59.445 52.381 0.00 0.00 0.00 3.51
4502 4599 4.595781 AGGTACAATCACTCCACTAACCAA 59.404 41.667 0.00 0.00 0.00 3.67
4503 4600 4.935808 GGTACAATCACTCCACTAACCAAG 59.064 45.833 0.00 0.00 0.00 3.61
4516 4613 4.529377 CACTAACCAAGTAGACCCAGGTTA 59.471 45.833 0.00 0.00 42.23 2.85
4519 4616 3.595021 ACCAAGTAGACCCAGGTTAGTT 58.405 45.455 0.00 0.00 0.00 2.24
4527 4624 4.354662 AGACCCAGGTTAGTTCTCTAAGG 58.645 47.826 0.00 0.00 36.90 2.69
4532 4629 4.223032 CCAGGTTAGTTCTCTAAGGAGCAA 59.777 45.833 0.00 0.00 39.31 3.91
4573 4673 8.432013 TGGTGCATATCTGTATTGTTCTTATCT 58.568 33.333 0.00 0.00 0.00 1.98
4592 4692 7.931948 TCTTATCTTTTTCCTCGTCTCAAGTTT 59.068 33.333 0.00 0.00 0.00 2.66
4597 4697 4.351874 TTCCTCGTCTCAAGTTTCCAAT 57.648 40.909 0.00 0.00 0.00 3.16
4605 4705 3.117701 TCTCAAGTTTCCAATCCACCACA 60.118 43.478 0.00 0.00 0.00 4.17
4614 4714 2.824936 CCAATCCACCACAATGCAACTA 59.175 45.455 0.00 0.00 0.00 2.24
4628 4728 3.881220 TGCAACTAATAACTACTGGCCC 58.119 45.455 0.00 0.00 0.00 5.80
4629 4729 3.521937 TGCAACTAATAACTACTGGCCCT 59.478 43.478 0.00 0.00 0.00 5.19
4630 4730 4.018779 TGCAACTAATAACTACTGGCCCTT 60.019 41.667 0.00 0.00 0.00 3.95
4631 4731 4.335594 GCAACTAATAACTACTGGCCCTTG 59.664 45.833 0.00 0.00 0.00 3.61
4632 4732 5.741011 CAACTAATAACTACTGGCCCTTGA 58.259 41.667 0.00 0.00 0.00 3.02
4633 4733 5.354842 ACTAATAACTACTGGCCCTTGAC 57.645 43.478 0.00 0.00 0.00 3.18
4634 4734 2.981859 ATAACTACTGGCCCTTGACG 57.018 50.000 0.00 0.00 0.00 4.35
4635 4735 0.248289 TAACTACTGGCCCTTGACGC 59.752 55.000 0.00 0.00 0.00 5.19
4636 4736 1.764571 AACTACTGGCCCTTGACGCA 61.765 55.000 0.00 0.00 0.00 5.24
4637 4737 1.221840 CTACTGGCCCTTGACGCAT 59.778 57.895 0.00 0.00 0.00 4.73
4638 4738 0.811616 CTACTGGCCCTTGACGCATC 60.812 60.000 0.00 0.00 0.00 3.91
4639 4739 2.252072 TACTGGCCCTTGACGCATCC 62.252 60.000 0.00 0.00 0.00 3.51
4640 4740 4.776322 TGGCCCTTGACGCATCCG 62.776 66.667 0.00 0.00 41.14 4.18
4651 4751 2.795175 ACGCATCCGTCTACTAATGG 57.205 50.000 0.00 0.00 46.39 3.16
4652 4752 2.029623 ACGCATCCGTCTACTAATGGT 58.970 47.619 0.00 0.00 46.39 3.55
4653 4753 2.223735 ACGCATCCGTCTACTAATGGTG 60.224 50.000 0.00 0.00 46.39 4.17
4654 4754 2.755650 GCATCCGTCTACTAATGGTGG 58.244 52.381 0.00 0.00 0.00 4.61
4655 4755 2.548067 GCATCCGTCTACTAATGGTGGG 60.548 54.545 0.00 0.00 0.00 4.61
4656 4756 2.832643 TCCGTCTACTAATGGTGGGA 57.167 50.000 0.00 0.00 0.00 4.37
4657 4757 2.381911 TCCGTCTACTAATGGTGGGAC 58.618 52.381 0.00 0.00 0.00 4.46
4658 4758 2.104967 CCGTCTACTAATGGTGGGACA 58.895 52.381 5.83 0.00 34.32 4.02
4659 4759 2.498481 CCGTCTACTAATGGTGGGACAA 59.502 50.000 5.83 0.00 44.16 3.18
4660 4760 3.430374 CCGTCTACTAATGGTGGGACAAG 60.430 52.174 5.83 0.00 44.16 3.16
4661 4761 3.194968 CGTCTACTAATGGTGGGACAAGT 59.805 47.826 5.83 0.00 44.16 3.16
4662 4762 4.504858 GTCTACTAATGGTGGGACAAGTG 58.495 47.826 0.00 0.00 44.16 3.16
4663 4763 4.222145 GTCTACTAATGGTGGGACAAGTGA 59.778 45.833 0.00 0.00 44.16 3.41
4664 4764 4.841813 TCTACTAATGGTGGGACAAGTGAA 59.158 41.667 0.00 0.00 44.16 3.18
4665 4765 3.751518 ACTAATGGTGGGACAAGTGAAC 58.248 45.455 0.00 0.00 44.16 3.18
4666 4766 1.995376 AATGGTGGGACAAGTGAACC 58.005 50.000 0.00 0.00 44.16 3.62
4667 4767 0.250727 ATGGTGGGACAAGTGAACCG 60.251 55.000 0.00 0.00 44.16 4.44
4668 4768 1.338890 TGGTGGGACAAGTGAACCGA 61.339 55.000 0.00 0.00 44.16 4.69
4669 4769 0.036306 GGTGGGACAAGTGAACCGAT 59.964 55.000 0.00 0.00 44.16 4.18
4670 4770 1.276989 GGTGGGACAAGTGAACCGATA 59.723 52.381 0.00 0.00 44.16 2.92
4671 4771 2.289819 GGTGGGACAAGTGAACCGATAA 60.290 50.000 0.00 0.00 44.16 1.75
4672 4772 3.606687 GTGGGACAAGTGAACCGATAAT 58.393 45.455 0.00 0.00 44.16 1.28
4673 4773 3.621715 GTGGGACAAGTGAACCGATAATC 59.378 47.826 0.00 0.00 44.16 1.75
4674 4774 3.262151 TGGGACAAGTGAACCGATAATCA 59.738 43.478 0.00 0.00 31.92 2.57
4675 4775 4.080582 TGGGACAAGTGAACCGATAATCAT 60.081 41.667 0.00 0.00 31.92 2.45
4676 4776 5.129650 TGGGACAAGTGAACCGATAATCATA 59.870 40.000 0.00 0.00 31.92 2.15
4677 4777 6.053005 GGGACAAGTGAACCGATAATCATAA 58.947 40.000 0.00 0.00 0.00 1.90
4678 4778 6.018180 GGGACAAGTGAACCGATAATCATAAC 60.018 42.308 0.00 0.00 0.00 1.89
4679 4779 6.761714 GGACAAGTGAACCGATAATCATAACT 59.238 38.462 0.00 0.00 0.00 2.24
4680 4780 7.042658 GGACAAGTGAACCGATAATCATAACTC 60.043 40.741 0.00 0.00 0.00 3.01
4681 4781 6.761714 ACAAGTGAACCGATAATCATAACTCC 59.238 38.462 0.00 0.00 0.00 3.85
4682 4782 6.479972 AGTGAACCGATAATCATAACTCCA 57.520 37.500 0.00 0.00 0.00 3.86
4683 4783 6.884832 AGTGAACCGATAATCATAACTCCAA 58.115 36.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.892425 GTGCCGATGGGAAGCTCG 60.892 66.667 0.00 0.00 34.06 5.03
73 74 1.684983 GTAACCTAGCTATGGTGCCGA 59.315 52.381 13.52 1.19 37.93 5.54
74 75 1.687123 AGTAACCTAGCTATGGTGCCG 59.313 52.381 13.52 0.00 37.93 5.69
93 94 5.602145 AGAGAAGGATTACAGAAGATGGGAG 59.398 44.000 0.00 0.00 0.00 4.30
108 109 1.134580 CACCGCATGTCAGAGAAGGAT 60.135 52.381 0.00 0.00 0.00 3.24
121 122 1.139058 GTTCCCAGATAGACACCGCAT 59.861 52.381 0.00 0.00 0.00 4.73
131 132 3.961408 GACTGCTAGAAGGTTCCCAGATA 59.039 47.826 1.87 0.00 0.00 1.98
132 133 2.769095 GACTGCTAGAAGGTTCCCAGAT 59.231 50.000 1.87 0.00 0.00 2.90
139 140 0.615850 GGCTGGACTGCTAGAAGGTT 59.384 55.000 1.87 0.00 0.00 3.50
231 232 0.918258 TCTGGTGCCAATGCTATGGA 59.082 50.000 11.89 0.00 43.54 3.41
263 264 6.575244 AACAACAACATATATGAGGAGGGA 57.425 37.500 19.63 0.00 0.00 4.20
289 290 2.357517 GTGGTCGCTCTGGTGGTG 60.358 66.667 0.00 0.00 0.00 4.17
340 341 4.809513 GGACTGGAAGAGGCCCTA 57.190 61.111 0.00 0.00 45.88 3.53
377 378 6.460537 CCGTTTGCCTTAGTTTTTAAGGACTT 60.461 38.462 15.32 0.00 45.24 3.01
440 443 0.389817 GCTGTGTGTGGTATGCTCGA 60.390 55.000 0.00 0.00 0.00 4.04
504 507 0.460987 CATGGTCAGAGACGGGAAGC 60.461 60.000 0.00 0.00 32.65 3.86
535 538 8.289618 CGAATCAATGTCTTTAAACCTTTGAGA 58.710 33.333 12.84 0.00 0.00 3.27
536 539 8.289618 TCGAATCAATGTCTTTAAACCTTTGAG 58.710 33.333 12.84 5.06 0.00 3.02
548 551 3.502211 GTGTGGGTTCGAATCAATGTCTT 59.498 43.478 11.19 0.00 0.00 3.01
559 562 1.646912 TTCTATGGGTGTGGGTTCGA 58.353 50.000 0.00 0.00 0.00 3.71
587 591 8.749354 ACTGTGTCTTAAAACCTTTGAAGAATT 58.251 29.630 0.00 0.00 38.91 2.17
588 592 8.293699 ACTGTGTCTTAAAACCTTTGAAGAAT 57.706 30.769 0.00 0.00 38.91 2.40
589 593 7.696992 ACTGTGTCTTAAAACCTTTGAAGAA 57.303 32.000 0.00 0.00 38.91 2.52
590 594 8.044908 ACTACTGTGTCTTAAAACCTTTGAAGA 58.955 33.333 0.00 0.00 35.72 2.87
591 595 8.122952 CACTACTGTGTCTTAAAACCTTTGAAG 58.877 37.037 0.00 0.00 39.24 3.02
592 596 7.981142 CACTACTGTGTCTTAAAACCTTTGAA 58.019 34.615 0.00 0.00 39.24 2.69
593 597 7.548196 CACTACTGTGTCTTAAAACCTTTGA 57.452 36.000 0.00 0.00 39.24 2.69
609 613 5.365619 CCACAACTAGGAAAACACTACTGT 58.634 41.667 0.00 0.00 0.00 3.55
610 614 4.213482 GCCACAACTAGGAAAACACTACTG 59.787 45.833 0.00 0.00 0.00 2.74
622 626 3.181455 TGCCTATGTATGCCACAACTAGG 60.181 47.826 9.39 9.39 40.63 3.02
623 627 3.809832 GTGCCTATGTATGCCACAACTAG 59.190 47.826 0.00 0.00 41.55 2.57
624 628 3.198853 TGTGCCTATGTATGCCACAACTA 59.801 43.478 0.00 0.00 41.55 2.24
626 630 2.364632 TGTGCCTATGTATGCCACAAC 58.635 47.619 0.00 0.00 41.55 3.32
666 670 5.180271 CCAAATTCTTAACTACAGGCCGTA 58.820 41.667 0.00 1.87 0.00 4.02
682 686 2.489722 GCTGAACCTCTGTCCCAAATTC 59.510 50.000 0.00 0.00 0.00 2.17
687 691 0.178921 AGAGCTGAACCTCTGTCCCA 60.179 55.000 0.00 0.00 40.55 4.37
694 698 1.808133 CGCCCAATAGAGCTGAACCTC 60.808 57.143 0.00 0.00 0.00 3.85
708 716 1.222387 CTAAATCGTCCCCGCCCAA 59.778 57.895 0.00 0.00 0.00 4.12
710 718 1.227468 GACTAAATCGTCCCCGCCC 60.227 63.158 0.00 0.00 0.00 6.13
712 720 1.949465 AATGACTAAATCGTCCCCGC 58.051 50.000 0.00 0.00 32.97 6.13
713 721 4.940463 TCTAAATGACTAAATCGTCCCCG 58.060 43.478 0.00 0.00 32.97 5.73
714 722 4.750598 GCTCTAAATGACTAAATCGTCCCC 59.249 45.833 0.00 0.00 32.97 4.81
715 723 5.602628 AGCTCTAAATGACTAAATCGTCCC 58.397 41.667 0.00 0.00 32.97 4.46
716 724 6.201234 GGAAGCTCTAAATGACTAAATCGTCC 59.799 42.308 0.00 0.00 32.97 4.79
717 725 6.201234 GGGAAGCTCTAAATGACTAAATCGTC 59.799 42.308 0.00 0.00 34.52 4.20
718 726 6.049790 GGGAAGCTCTAAATGACTAAATCGT 58.950 40.000 0.00 0.00 0.00 3.73
719 727 6.049149 TGGGAAGCTCTAAATGACTAAATCG 58.951 40.000 0.00 0.00 0.00 3.34
720 728 6.017523 GCTGGGAAGCTCTAAATGACTAAATC 60.018 42.308 0.00 0.00 0.00 2.17
721 729 5.825151 GCTGGGAAGCTCTAAATGACTAAAT 59.175 40.000 0.00 0.00 0.00 1.40
722 730 5.186198 GCTGGGAAGCTCTAAATGACTAAA 58.814 41.667 0.00 0.00 0.00 1.85
723 731 4.384208 GGCTGGGAAGCTCTAAATGACTAA 60.384 45.833 0.00 0.00 34.73 2.24
724 732 3.134804 GGCTGGGAAGCTCTAAATGACTA 59.865 47.826 0.00 0.00 34.73 2.59
725 733 2.092699 GGCTGGGAAGCTCTAAATGACT 60.093 50.000 0.00 0.00 34.73 3.41
726 734 2.293170 GGCTGGGAAGCTCTAAATGAC 58.707 52.381 0.00 0.00 34.73 3.06
727 735 1.212935 GGGCTGGGAAGCTCTAAATGA 59.787 52.381 0.00 0.00 34.73 2.57
728 736 1.213926 AGGGCTGGGAAGCTCTAAATG 59.786 52.381 0.00 0.00 45.03 2.32
729 737 1.601248 AGGGCTGGGAAGCTCTAAAT 58.399 50.000 0.00 0.00 45.03 1.40
730 738 3.104837 AGGGCTGGGAAGCTCTAAA 57.895 52.632 0.00 0.00 45.03 1.85
731 739 4.919770 AGGGCTGGGAAGCTCTAA 57.080 55.556 0.00 0.00 45.03 2.10
734 742 4.847444 GCGAGGGCTGGGAAGCTC 62.847 72.222 0.00 0.00 35.83 4.09
737 745 2.657102 GATCTGCGAGGGCTGGGAAG 62.657 65.000 0.00 0.00 40.82 3.46
738 746 2.688666 ATCTGCGAGGGCTGGGAA 60.689 61.111 0.00 0.00 40.82 3.97
739 747 3.157252 GATCTGCGAGGGCTGGGA 61.157 66.667 0.00 0.00 40.82 4.37
740 748 3.035173 TTGATCTGCGAGGGCTGGG 62.035 63.158 0.00 0.00 40.82 4.45
741 749 1.817099 GTTGATCTGCGAGGGCTGG 60.817 63.158 0.00 0.00 40.82 4.85
742 750 0.809241 GAGTTGATCTGCGAGGGCTG 60.809 60.000 0.00 0.00 40.82 4.85
743 751 0.975040 AGAGTTGATCTGCGAGGGCT 60.975 55.000 0.00 0.00 40.82 5.19
744 752 0.747255 TAGAGTTGATCTGCGAGGGC 59.253 55.000 0.00 0.00 39.20 5.19
745 753 3.742433 ATTAGAGTTGATCTGCGAGGG 57.258 47.619 0.00 0.00 39.20 4.30
746 754 3.806521 CCAATTAGAGTTGATCTGCGAGG 59.193 47.826 0.00 0.00 39.20 4.63
747 755 3.806521 CCCAATTAGAGTTGATCTGCGAG 59.193 47.826 0.00 0.00 39.20 5.03
748 756 3.797039 CCCAATTAGAGTTGATCTGCGA 58.203 45.455 0.00 0.00 39.20 5.10
749 757 2.289002 GCCCAATTAGAGTTGATCTGCG 59.711 50.000 0.00 0.00 39.20 5.18
750 758 3.314635 CAGCCCAATTAGAGTTGATCTGC 59.685 47.826 0.00 0.00 39.20 4.26
751 759 3.881688 CCAGCCCAATTAGAGTTGATCTG 59.118 47.826 0.00 0.00 39.20 2.90
752 760 3.117738 CCCAGCCCAATTAGAGTTGATCT 60.118 47.826 0.00 0.00 42.47 2.75
753 761 3.117888 TCCCAGCCCAATTAGAGTTGATC 60.118 47.826 0.00 0.00 0.00 2.92
754 762 2.852449 TCCCAGCCCAATTAGAGTTGAT 59.148 45.455 0.00 0.00 0.00 2.57
755 763 2.026262 GTCCCAGCCCAATTAGAGTTGA 60.026 50.000 0.00 0.00 0.00 3.18
756 764 2.369394 GTCCCAGCCCAATTAGAGTTG 58.631 52.381 0.00 0.00 0.00 3.16
757 765 1.065418 CGTCCCAGCCCAATTAGAGTT 60.065 52.381 0.00 0.00 0.00 3.01
758 766 0.541863 CGTCCCAGCCCAATTAGAGT 59.458 55.000 0.00 0.00 0.00 3.24
759 767 0.830648 TCGTCCCAGCCCAATTAGAG 59.169 55.000 0.00 0.00 0.00 2.43
760 768 0.539986 GTCGTCCCAGCCCAATTAGA 59.460 55.000 0.00 0.00 0.00 2.10
761 769 0.463833 GGTCGTCCCAGCCCAATTAG 60.464 60.000 0.00 0.00 0.00 1.73
762 770 1.605453 GGTCGTCCCAGCCCAATTA 59.395 57.895 0.00 0.00 0.00 1.40
763 771 2.355115 GGTCGTCCCAGCCCAATT 59.645 61.111 0.00 0.00 0.00 2.32
773 781 1.682740 TTTGTTTTGAGGGGTCGTCC 58.317 50.000 0.00 0.00 0.00 4.79
774 782 3.786516 TTTTTGTTTTGAGGGGTCGTC 57.213 42.857 0.00 0.00 0.00 4.20
800 808 1.407618 GTGTTTCGTCCCAGCCTTTTT 59.592 47.619 0.00 0.00 0.00 1.94
801 809 1.029681 GTGTTTCGTCCCAGCCTTTT 58.970 50.000 0.00 0.00 0.00 2.27
802 810 0.182775 AGTGTTTCGTCCCAGCCTTT 59.817 50.000 0.00 0.00 0.00 3.11
803 811 0.535102 CAGTGTTTCGTCCCAGCCTT 60.535 55.000 0.00 0.00 0.00 4.35
804 812 1.071471 CAGTGTTTCGTCCCAGCCT 59.929 57.895 0.00 0.00 0.00 4.58
840 848 0.539986 GTGTCCAGAAGGGCCGAATA 59.460 55.000 0.00 0.00 39.40 1.75
841 849 1.299976 GTGTCCAGAAGGGCCGAAT 59.700 57.895 0.00 0.00 39.40 3.34
843 851 2.525629 TGTGTCCAGAAGGGCCGA 60.526 61.111 0.00 0.00 39.40 5.54
844 852 2.046892 CTGTGTCCAGAAGGGCCG 60.047 66.667 0.00 0.00 41.50 6.13
845 853 2.360475 GCTGTGTCCAGAAGGGCC 60.360 66.667 0.00 0.00 41.50 5.80
846 854 0.957888 GAAGCTGTGTCCAGAAGGGC 60.958 60.000 0.00 0.00 41.50 5.19
847 855 0.671781 CGAAGCTGTGTCCAGAAGGG 60.672 60.000 0.00 0.00 41.50 3.95
848 856 0.671781 CCGAAGCTGTGTCCAGAAGG 60.672 60.000 0.00 0.00 41.50 3.46
849 857 0.034059 ACCGAAGCTGTGTCCAGAAG 59.966 55.000 0.00 0.00 41.50 2.85
850 858 0.249868 CACCGAAGCTGTGTCCAGAA 60.250 55.000 0.00 0.00 41.50 3.02
851 859 1.367471 CACCGAAGCTGTGTCCAGA 59.633 57.895 0.00 0.00 41.50 3.86
852 860 2.320587 GCACCGAAGCTGTGTCCAG 61.321 63.158 4.76 0.00 41.91 3.86
853 861 2.280797 GCACCGAAGCTGTGTCCA 60.281 61.111 4.76 0.00 36.11 4.02
854 862 3.050275 GGCACCGAAGCTGTGTCC 61.050 66.667 4.76 3.30 36.11 4.02
855 863 0.320421 TAAGGCACCGAAGCTGTGTC 60.320 55.000 0.00 0.00 38.60 3.67
856 864 0.107831 TTAAGGCACCGAAGCTGTGT 59.892 50.000 4.76 0.00 36.11 3.72
857 865 1.197721 CTTTAAGGCACCGAAGCTGTG 59.802 52.381 0.00 0.00 36.79 3.66
858 866 1.523758 CTTTAAGGCACCGAAGCTGT 58.476 50.000 0.00 0.00 34.17 4.40
859 867 0.804989 CCTTTAAGGCACCGAAGCTG 59.195 55.000 0.00 0.00 34.17 4.24
860 868 3.249687 CCTTTAAGGCACCGAAGCT 57.750 52.632 0.00 0.00 34.17 3.74
878 886 2.203480 TGACCCAAAGGCAGGTGC 60.203 61.111 0.00 0.00 36.17 5.01
879 887 1.151450 AGTGACCCAAAGGCAGGTG 59.849 57.895 0.00 0.00 36.17 4.00
880 888 1.151450 CAGTGACCCAAAGGCAGGT 59.849 57.895 0.00 0.00 39.75 4.00
881 889 0.890996 GTCAGTGACCCAAAGGCAGG 60.891 60.000 12.54 0.00 36.11 4.85
882 890 0.179020 TGTCAGTGACCCAAAGGCAG 60.179 55.000 20.43 0.00 36.11 4.85
883 891 0.478072 ATGTCAGTGACCCAAAGGCA 59.522 50.000 20.43 0.00 36.11 4.75
884 892 0.883833 CATGTCAGTGACCCAAAGGC 59.116 55.000 20.43 0.00 36.11 4.35
885 893 1.881973 CACATGTCAGTGACCCAAAGG 59.118 52.381 20.43 6.15 42.05 3.11
886 894 1.881973 CCACATGTCAGTGACCCAAAG 59.118 52.381 20.43 8.14 42.05 2.77
887 895 1.478471 CCCACATGTCAGTGACCCAAA 60.478 52.381 20.43 1.95 42.05 3.28
888 896 0.110295 CCCACATGTCAGTGACCCAA 59.890 55.000 20.43 2.34 42.05 4.12
889 897 1.059584 ACCCACATGTCAGTGACCCA 61.060 55.000 20.43 3.20 42.05 4.51
890 898 0.321653 GACCCACATGTCAGTGACCC 60.322 60.000 20.43 0.00 42.05 4.46
891 899 0.396435 TGACCCACATGTCAGTGACC 59.604 55.000 20.43 3.06 40.22 4.02
897 905 3.573673 TGGCTGACCCACATGTCA 58.426 55.556 0.00 0.00 42.75 3.58
913 921 0.178992 ACATGTGGGTCCAACAGGTG 60.179 55.000 15.96 7.15 0.00 4.00
914 922 0.110486 GACATGTGGGTCCAACAGGT 59.890 55.000 16.64 16.64 0.00 4.00
915 923 0.110295 TGACATGTGGGTCCAACAGG 59.890 55.000 9.59 9.59 36.97 4.00
916 924 2.205022 ATGACATGTGGGTCCAACAG 57.795 50.000 1.15 0.15 36.97 3.16
917 925 2.909662 TCTATGACATGTGGGTCCAACA 59.090 45.455 1.15 0.18 36.97 3.33
918 926 3.270877 GTCTATGACATGTGGGTCCAAC 58.729 50.000 1.15 0.00 36.97 3.77
919 927 2.909662 TGTCTATGACATGTGGGTCCAA 59.090 45.455 1.15 0.00 37.67 3.53
920 928 2.236146 GTGTCTATGACATGTGGGTCCA 59.764 50.000 1.15 0.00 44.63 4.02
921 929 2.236146 TGTGTCTATGACATGTGGGTCC 59.764 50.000 1.15 0.00 44.63 4.46
922 930 3.610040 TGTGTCTATGACATGTGGGTC 57.390 47.619 1.15 0.00 44.63 4.46
923 931 4.326826 CTTTGTGTCTATGACATGTGGGT 58.673 43.478 1.15 0.00 44.63 4.51
924 932 3.691118 CCTTTGTGTCTATGACATGTGGG 59.309 47.826 1.15 2.15 44.63 4.61
925 933 4.326826 ACCTTTGTGTCTATGACATGTGG 58.673 43.478 1.15 0.00 44.63 4.17
926 934 5.582269 CCTACCTTTGTGTCTATGACATGTG 59.418 44.000 1.15 0.00 44.63 3.21
927 935 5.248477 ACCTACCTTTGTGTCTATGACATGT 59.752 40.000 0.00 0.00 44.63 3.21
928 936 5.582269 CACCTACCTTTGTGTCTATGACATG 59.418 44.000 3.65 0.00 44.63 3.21
929 937 5.734720 CACCTACCTTTGTGTCTATGACAT 58.265 41.667 3.65 0.00 44.63 3.06
930 938 4.562757 GCACCTACCTTTGTGTCTATGACA 60.563 45.833 0.00 0.00 40.50 3.58
931 939 3.933332 GCACCTACCTTTGTGTCTATGAC 59.067 47.826 0.00 0.00 34.94 3.06
932 940 3.055385 GGCACCTACCTTTGTGTCTATGA 60.055 47.826 0.00 0.00 34.34 2.15
933 941 3.055094 AGGCACCTACCTTTGTGTCTATG 60.055 47.826 0.00 0.00 45.05 2.23
934 942 3.182152 AGGCACCTACCTTTGTGTCTAT 58.818 45.455 0.00 0.00 45.05 1.98
935 943 2.616524 AGGCACCTACCTTTGTGTCTA 58.383 47.619 0.00 0.00 45.05 2.59
936 944 1.435256 AGGCACCTACCTTTGTGTCT 58.565 50.000 0.00 0.00 42.30 3.41
953 961 1.133025 CAATGCTTCGGTGCCTTAAGG 59.867 52.381 17.81 17.81 38.53 2.69
954 962 1.812571 ACAATGCTTCGGTGCCTTAAG 59.187 47.619 0.00 0.00 0.00 1.85
955 963 1.810151 GACAATGCTTCGGTGCCTTAA 59.190 47.619 0.00 0.00 0.00 1.85
956 964 1.448985 GACAATGCTTCGGTGCCTTA 58.551 50.000 0.00 0.00 0.00 2.69
957 965 1.244019 GGACAATGCTTCGGTGCCTT 61.244 55.000 0.00 0.00 0.00 4.35
958 966 1.675641 GGACAATGCTTCGGTGCCT 60.676 57.895 0.00 0.00 0.00 4.75
959 967 2.877691 GGACAATGCTTCGGTGCC 59.122 61.111 0.00 0.00 0.00 5.01
960 968 2.480555 CGGACAATGCTTCGGTGC 59.519 61.111 0.00 0.00 0.00 5.01
961 969 3.039202 GCCGGACAATGCTTCGGTG 62.039 63.158 5.05 0.00 43.87 4.94
962 970 2.746277 GCCGGACAATGCTTCGGT 60.746 61.111 5.05 0.00 43.87 4.69
963 971 3.508840 GGCCGGACAATGCTTCGG 61.509 66.667 5.05 5.40 44.70 4.30
964 972 3.508840 GGGCCGGACAATGCTTCG 61.509 66.667 11.00 0.00 0.00 3.79
965 973 2.044946 AGGGCCGGACAATGCTTC 60.045 61.111 11.00 0.00 0.00 3.86
966 974 2.044946 GAGGGCCGGACAATGCTT 60.045 61.111 11.00 0.00 0.00 3.91
967 975 4.115199 GGAGGGCCGGACAATGCT 62.115 66.667 11.00 0.00 0.00 3.79
968 976 4.115199 AGGAGGGCCGGACAATGC 62.115 66.667 11.00 1.24 39.96 3.56
969 977 2.190578 GAGGAGGGCCGGACAATG 59.809 66.667 11.00 0.00 39.96 2.82
970 978 3.470888 CGAGGAGGGCCGGACAAT 61.471 66.667 11.00 0.00 39.96 2.71
974 982 4.458829 ATGACGAGGAGGGCCGGA 62.459 66.667 5.05 0.00 39.96 5.14
975 983 3.917760 GATGACGAGGAGGGCCGG 61.918 72.222 0.00 0.00 39.96 6.13
1090 1135 1.382420 AGAGAGAGAGCGCCCCAAT 60.382 57.895 2.29 0.00 0.00 3.16
1228 1273 3.196394 GCGACGCTCCTCGAGAGA 61.196 66.667 15.71 8.70 46.50 3.10
1421 1467 5.888982 TCCATTACTCCTCTAAATCCACC 57.111 43.478 0.00 0.00 0.00 4.61
1742 1789 3.866910 TCGAAACACTAGTTGACACAACC 59.133 43.478 10.38 0.00 38.17 3.77
1857 1906 8.480643 AAAACTCTGTATCTTTATTCGTCCAG 57.519 34.615 0.00 0.00 0.00 3.86
2030 2092 6.471233 AGCTCATAACAACAGCATCTACTA 57.529 37.500 0.00 0.00 35.46 1.82
2055 2117 2.521465 CCAGGTGCCAACTTGCCA 60.521 61.111 0.00 0.00 32.19 4.92
2199 2262 8.540388 ACTTTCTCTACCAATGAGCATTAGTAA 58.460 33.333 3.75 0.00 27.67 2.24
2258 2321 2.918712 ATCGGACTTAGCCTGGAATG 57.081 50.000 0.00 0.00 0.00 2.67
2286 2349 4.592351 TGGCTTCAATTCTCAAATTTGGGA 59.408 37.500 16.94 16.94 35.48 4.37
2470 2534 6.558394 TCAGAGAACATATCCATGGATACCAA 59.442 38.462 32.22 16.21 39.56 3.67
3003 3067 0.898326 TTCTGGTGCGAGCCTCACTA 60.898 55.000 0.00 0.00 34.97 2.74
3087 3151 4.340950 AGCAAAATTCCATTACCGGTATGG 59.659 41.667 25.40 25.40 46.41 2.74
3111 3175 5.324409 TCCTTCAAGAAGCAACATGGTAAT 58.676 37.500 4.30 0.00 37.11 1.89
3315 3379 8.137437 CAGTTGAAAGTTGAAACCATACATCTT 58.863 33.333 0.00 0.00 0.00 2.40
3320 3384 6.791303 TCACAGTTGAAAGTTGAAACCATAC 58.209 36.000 0.00 0.00 0.00 2.39
3701 3765 4.256920 TGGATCTGAAGCTTCTGTTAAGC 58.743 43.478 26.09 12.91 43.31 3.09
3746 3810 2.662596 CTCCCTGGCAGTGCGTTA 59.337 61.111 14.43 0.00 0.00 3.18
3838 3903 6.795098 ATAACGTAACAAAATGTGAGCAGA 57.205 33.333 0.00 0.00 0.00 4.26
3841 3906 8.837059 CAGTAAATAACGTAACAAAATGTGAGC 58.163 33.333 0.00 0.00 0.00 4.26
3857 3922 8.040716 AGTACCAACAATCAGCAGTAAATAAC 57.959 34.615 0.00 0.00 0.00 1.89
3869 3934 3.167485 ACGGAGGTAGTACCAACAATCA 58.833 45.455 21.49 0.00 41.95 2.57
3881 3946 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
3882 3947 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
3884 3949 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
3885 3950 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
3886 3951 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
3887 3952 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
3888 3953 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
3890 3955 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
3891 3956 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
3892 3957 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
3893 3958 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
3894 3959 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
3895 3960 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
3896 3961 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
3897 3962 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
3898 3963 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
3899 3964 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
3900 3965 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
3901 3966 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
3902 3967 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
3903 3968 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
3904 3969 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
3905 3970 2.351157 GCAACCTAGGTATACGCGTAGG 60.351 54.545 24.78 21.85 46.64 3.18
3906 3971 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
3907 3972 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42
3908 3973 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
3909 3974 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
3910 3975 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
3911 3976 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
3912 3977 8.685838 TGATAAAATTGGCAACCTAGGTATAC 57.314 34.615 16.67 8.74 0.00 1.47
3913 3978 9.515226 GATGATAAAATTGGCAACCTAGGTATA 57.485 33.333 16.67 0.00 0.00 1.47
3914 3979 8.227507 AGATGATAAAATTGGCAACCTAGGTAT 58.772 33.333 16.67 0.83 0.00 2.73
3915 3980 7.582719 AGATGATAAAATTGGCAACCTAGGTA 58.417 34.615 16.67 0.00 0.00 3.08
3916 3981 6.435164 AGATGATAAAATTGGCAACCTAGGT 58.565 36.000 9.21 9.21 0.00 3.08
3917 3982 6.966534 AGATGATAAAATTGGCAACCTAGG 57.033 37.500 7.41 7.41 0.00 3.02
3918 3983 7.999679 TGAAGATGATAAAATTGGCAACCTAG 58.000 34.615 0.00 0.00 0.00 3.02
3919 3984 7.953005 TGAAGATGATAAAATTGGCAACCTA 57.047 32.000 0.00 0.00 0.00 3.08
3920 3985 6.855763 TGAAGATGATAAAATTGGCAACCT 57.144 33.333 0.00 0.00 0.00 3.50
3967 4032 9.878667 TCAGATGTTCTATTTTCAAACCGTATA 57.121 29.630 0.00 0.00 0.00 1.47
3968 4033 8.786826 TCAGATGTTCTATTTTCAAACCGTAT 57.213 30.769 0.00 0.00 0.00 3.06
3969 4034 8.610248 TTCAGATGTTCTATTTTCAAACCGTA 57.390 30.769 0.00 0.00 0.00 4.02
3970 4035 7.228706 ACTTCAGATGTTCTATTTTCAAACCGT 59.771 33.333 0.00 0.00 0.00 4.83
3971 4036 7.584987 ACTTCAGATGTTCTATTTTCAAACCG 58.415 34.615 0.00 0.00 0.00 4.44
3972 4037 9.750125 AAACTTCAGATGTTCTATTTTCAAACC 57.250 29.630 2.28 0.00 0.00 3.27
4021 4086 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
4022 4087 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
4023 4088 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
4024 4089 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
4025 4090 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
4026 4091 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
4027 4092 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
4028 4093 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
4029 4094 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
4030 4095 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
4031 4096 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
4032 4097 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
4041 4106 2.930682 GCTCCTAGGTCGTCAATTTGAC 59.069 50.000 17.76 17.76 43.65 3.18
4042 4107 2.565391 TGCTCCTAGGTCGTCAATTTGA 59.435 45.455 9.08 0.00 0.00 2.69
4043 4108 2.673368 GTGCTCCTAGGTCGTCAATTTG 59.327 50.000 9.08 0.00 0.00 2.32
4044 4109 2.674177 CGTGCTCCTAGGTCGTCAATTT 60.674 50.000 9.08 0.00 0.00 1.82
4045 4110 1.135083 CGTGCTCCTAGGTCGTCAATT 60.135 52.381 9.08 0.00 0.00 2.32
4046 4111 0.456221 CGTGCTCCTAGGTCGTCAAT 59.544 55.000 9.08 0.00 0.00 2.57
4047 4112 1.880894 CGTGCTCCTAGGTCGTCAA 59.119 57.895 9.08 0.00 0.00 3.18
4048 4113 2.697761 GCGTGCTCCTAGGTCGTCA 61.698 63.158 9.08 0.00 0.00 4.35
4049 4114 2.102553 GCGTGCTCCTAGGTCGTC 59.897 66.667 9.08 0.00 0.00 4.20
4050 4115 3.812019 CGCGTGCTCCTAGGTCGT 61.812 66.667 9.08 0.00 0.00 4.34
4051 4116 2.466982 TACGCGTGCTCCTAGGTCG 61.467 63.158 24.59 10.72 0.00 4.79
4052 4117 1.063811 GTACGCGTGCTCCTAGGTC 59.936 63.158 24.59 2.70 0.00 3.85
4053 4118 2.758089 CGTACGCGTGCTCCTAGGT 61.758 63.158 24.59 0.00 0.00 3.08
4054 4119 2.024305 CGTACGCGTGCTCCTAGG 59.976 66.667 24.59 0.82 0.00 3.02
4055 4120 2.651232 GCGTACGCGTGCTCCTAG 60.651 66.667 26.17 8.49 40.81 3.02
4056 4121 4.183686 GGCGTACGCGTGCTCCTA 62.184 66.667 31.78 0.44 43.06 2.94
4059 4124 2.121564 TATAGGGCGTACGCGTGCTC 62.122 60.000 31.78 18.37 43.06 4.26
4060 4125 1.727511 TTATAGGGCGTACGCGTGCT 61.728 55.000 31.78 19.24 43.06 4.40
4061 4126 0.871163 TTTATAGGGCGTACGCGTGC 60.871 55.000 31.78 21.11 43.06 5.34
4062 4127 0.848305 GTTTATAGGGCGTACGCGTG 59.152 55.000 31.78 7.20 43.06 5.34
4063 4128 0.740737 AGTTTATAGGGCGTACGCGT 59.259 50.000 31.78 23.82 43.06 6.01
4064 4129 1.126079 CAGTTTATAGGGCGTACGCG 58.874 55.000 31.78 3.53 43.06 6.01
4065 4130 2.033801 TCTCAGTTTATAGGGCGTACGC 59.966 50.000 31.54 31.54 41.06 4.42
4066 4131 3.562973 TCTCTCAGTTTATAGGGCGTACG 59.437 47.826 11.84 11.84 0.00 3.67
4067 4132 4.820716 TCTCTCTCAGTTTATAGGGCGTAC 59.179 45.833 0.00 0.00 0.00 3.67
4068 4133 5.045012 TCTCTCTCAGTTTATAGGGCGTA 57.955 43.478 0.00 0.00 0.00 4.42
4069 4134 3.886505 CTCTCTCTCAGTTTATAGGGCGT 59.113 47.826 0.00 0.00 0.00 5.68
4070 4135 3.254657 CCTCTCTCTCAGTTTATAGGGCG 59.745 52.174 0.00 0.00 0.00 6.13
4071 4136 4.219919 ACCTCTCTCTCAGTTTATAGGGC 58.780 47.826 0.00 0.00 0.00 5.19
4072 4137 6.607019 ACTACCTCTCTCTCAGTTTATAGGG 58.393 44.000 0.00 0.00 0.00 3.53
4073 4138 9.629878 TTTACTACCTCTCTCTCAGTTTATAGG 57.370 37.037 0.00 0.00 0.00 2.57
4078 4143 8.871125 TCAATTTTACTACCTCTCTCTCAGTTT 58.129 33.333 0.00 0.00 0.00 2.66
4079 4144 8.423906 TCAATTTTACTACCTCTCTCTCAGTT 57.576 34.615 0.00 0.00 0.00 3.16
4080 4145 8.474025 CATCAATTTTACTACCTCTCTCTCAGT 58.526 37.037 0.00 0.00 0.00 3.41
4081 4146 8.474025 ACATCAATTTTACTACCTCTCTCTCAG 58.526 37.037 0.00 0.00 0.00 3.35
4082 4147 8.367660 ACATCAATTTTACTACCTCTCTCTCA 57.632 34.615 0.00 0.00 0.00 3.27
4083 4148 9.959749 CTACATCAATTTTACTACCTCTCTCTC 57.040 37.037 0.00 0.00 0.00 3.20
4084 4149 8.417884 GCTACATCAATTTTACTACCTCTCTCT 58.582 37.037 0.00 0.00 0.00 3.10
4085 4150 8.198109 TGCTACATCAATTTTACTACCTCTCTC 58.802 37.037 0.00 0.00 0.00 3.20
4086 4151 8.079211 TGCTACATCAATTTTACTACCTCTCT 57.921 34.615 0.00 0.00 0.00 3.10
4087 4152 8.198109 TCTGCTACATCAATTTTACTACCTCTC 58.802 37.037 0.00 0.00 0.00 3.20
4088 4153 8.079211 TCTGCTACATCAATTTTACTACCTCT 57.921 34.615 0.00 0.00 0.00 3.69
4089 4154 7.439655 CCTCTGCTACATCAATTTTACTACCTC 59.560 40.741 0.00 0.00 0.00 3.85
4090 4155 7.275920 CCTCTGCTACATCAATTTTACTACCT 58.724 38.462 0.00 0.00 0.00 3.08
4091 4156 6.483640 CCCTCTGCTACATCAATTTTACTACC 59.516 42.308 0.00 0.00 0.00 3.18
4092 4157 6.483640 CCCCTCTGCTACATCAATTTTACTAC 59.516 42.308 0.00 0.00 0.00 2.73
4093 4158 6.385759 TCCCCTCTGCTACATCAATTTTACTA 59.614 38.462 0.00 0.00 0.00 1.82
4094 4159 5.191722 TCCCCTCTGCTACATCAATTTTACT 59.808 40.000 0.00 0.00 0.00 2.24
4095 4160 5.297029 GTCCCCTCTGCTACATCAATTTTAC 59.703 44.000 0.00 0.00 0.00 2.01
4096 4161 5.045213 TGTCCCCTCTGCTACATCAATTTTA 60.045 40.000 0.00 0.00 0.00 1.52
4097 4162 4.263905 TGTCCCCTCTGCTACATCAATTTT 60.264 41.667 0.00 0.00 0.00 1.82
4098 4163 3.266772 TGTCCCCTCTGCTACATCAATTT 59.733 43.478 0.00 0.00 0.00 1.82
4099 4164 2.846206 TGTCCCCTCTGCTACATCAATT 59.154 45.455 0.00 0.00 0.00 2.32
4100 4165 2.481441 TGTCCCCTCTGCTACATCAAT 58.519 47.619 0.00 0.00 0.00 2.57
4101 4166 1.951209 TGTCCCCTCTGCTACATCAA 58.049 50.000 0.00 0.00 0.00 2.57
4102 4167 2.180946 ATGTCCCCTCTGCTACATCA 57.819 50.000 0.00 0.00 0.00 3.07
4103 4168 2.703007 AGAATGTCCCCTCTGCTACATC 59.297 50.000 0.00 0.00 31.53 3.06
4104 4169 2.769209 AGAATGTCCCCTCTGCTACAT 58.231 47.619 0.00 0.00 34.11 2.29
4105 4170 2.237143 CAAGAATGTCCCCTCTGCTACA 59.763 50.000 0.00 0.00 0.00 2.74
4106 4171 2.420687 CCAAGAATGTCCCCTCTGCTAC 60.421 54.545 0.00 0.00 0.00 3.58
4107 4172 1.839994 CCAAGAATGTCCCCTCTGCTA 59.160 52.381 0.00 0.00 0.00 3.49
4111 4176 1.918957 CTTCCCAAGAATGTCCCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
4134 4199 2.884012 CCCACTTGCCGCAATTATATCA 59.116 45.455 6.19 0.00 0.00 2.15
4162 4227 7.778382 CCCAAACTACAAAGGGCTTAGTAATAT 59.222 37.037 0.00 0.00 33.91 1.28
4268 4333 5.631512 CAGAAACAAACTTCGGTTTTTGTGA 59.368 36.000 9.10 0.00 44.73 3.58
4269 4334 5.404066 ACAGAAACAAACTTCGGTTTTTGTG 59.596 36.000 11.14 3.92 45.10 3.33
4279 4344 7.527457 ACTACAACAAGACAGAAACAAACTTC 58.473 34.615 0.00 0.00 0.00 3.01
4303 4368 5.066505 CCATGGAAAAGGTATTGAGCAGTAC 59.933 44.000 5.56 0.00 0.00 2.73
4306 4371 4.272489 TCCATGGAAAAGGTATTGAGCAG 58.728 43.478 13.46 0.00 0.00 4.24
4308 4373 3.067320 GCTCCATGGAAAAGGTATTGAGC 59.933 47.826 17.00 7.17 34.06 4.26
4314 4379 4.657814 AAGAAGCTCCATGGAAAAGGTA 57.342 40.909 17.00 0.00 0.00 3.08
4316 4381 3.379688 GCTAAGAAGCTCCATGGAAAAGG 59.620 47.826 17.00 5.03 45.85 3.11
4346 4411 9.762933 ATTTTAAAATGACAGTTGCATACTTGT 57.237 25.926 12.62 0.00 33.85 3.16
4378 4443 8.141268 CACAAACCAACCTCAAATTACACTTAT 58.859 33.333 0.00 0.00 0.00 1.73
4379 4444 7.416890 CCACAAACCAACCTCAAATTACACTTA 60.417 37.037 0.00 0.00 0.00 2.24
4380 4445 6.337356 CACAAACCAACCTCAAATTACACTT 58.663 36.000 0.00 0.00 0.00 3.16
4381 4446 5.163457 CCACAAACCAACCTCAAATTACACT 60.163 40.000 0.00 0.00 0.00 3.55
4382 4447 5.047188 CCACAAACCAACCTCAAATTACAC 58.953 41.667 0.00 0.00 0.00 2.90
4384 4449 5.270893 ACCACAAACCAACCTCAAATTAC 57.729 39.130 0.00 0.00 0.00 1.89
4385 4450 5.941555 AACCACAAACCAACCTCAAATTA 57.058 34.783 0.00 0.00 0.00 1.40
4387 4452 5.205056 TCTAACCACAAACCAACCTCAAAT 58.795 37.500 0.00 0.00 0.00 2.32
4388 4453 4.601084 TCTAACCACAAACCAACCTCAAA 58.399 39.130 0.00 0.00 0.00 2.69
4389 4454 4.237976 TCTAACCACAAACCAACCTCAA 57.762 40.909 0.00 0.00 0.00 3.02
4391 4456 4.825085 TCATTCTAACCACAAACCAACCTC 59.175 41.667 0.00 0.00 0.00 3.85
4392 4457 4.798882 TCATTCTAACCACAAACCAACCT 58.201 39.130 0.00 0.00 0.00 3.50
4394 4459 5.920273 CACATCATTCTAACCACAAACCAAC 59.080 40.000 0.00 0.00 0.00 3.77
4398 4463 7.644490 TGTTACACATCATTCTAACCACAAAC 58.356 34.615 0.00 0.00 0.00 2.93
4399 4464 7.040755 CCTGTTACACATCATTCTAACCACAAA 60.041 37.037 0.00 0.00 0.00 2.83
4400 4465 6.429692 CCTGTTACACATCATTCTAACCACAA 59.570 38.462 0.00 0.00 0.00 3.33
4402 4467 5.163754 GCCTGTTACACATCATTCTAACCAC 60.164 44.000 0.00 0.00 0.00 4.16
4406 4500 4.635765 GCAGCCTGTTACACATCATTCTAA 59.364 41.667 0.00 0.00 0.00 2.10
4413 4507 6.538742 TCTTATTTAGCAGCCTGTTACACATC 59.461 38.462 0.00 0.00 0.00 3.06
4438 4533 1.687996 CCCAGGTTTGACCCTTTGTGT 60.688 52.381 0.00 0.00 39.75 3.72
4439 4534 1.039856 CCCAGGTTTGACCCTTTGTG 58.960 55.000 0.00 0.00 39.75 3.33
4453 4548 3.642848 CCCATTAATGATCAAACCCCAGG 59.357 47.826 17.23 1.13 0.00 4.45
4454 4549 3.070015 GCCCATTAATGATCAAACCCCAG 59.930 47.826 17.23 0.00 0.00 4.45
4455 4550 3.037549 GCCCATTAATGATCAAACCCCA 58.962 45.455 17.23 0.00 0.00 4.96
4456 4551 3.070015 CAGCCCATTAATGATCAAACCCC 59.930 47.826 17.23 0.00 0.00 4.95
4457 4552 3.960102 TCAGCCCATTAATGATCAAACCC 59.040 43.478 17.23 0.00 0.00 4.11
4470 4567 2.578021 AGTGATTGTACCTCAGCCCATT 59.422 45.455 0.00 0.00 0.00 3.16
4478 4575 4.222145 TGGTTAGTGGAGTGATTGTACCTC 59.778 45.833 0.00 0.00 0.00 3.85
4480 4577 4.546829 TGGTTAGTGGAGTGATTGTACC 57.453 45.455 0.00 0.00 0.00 3.34
4492 4589 2.236395 CCTGGGTCTACTTGGTTAGTGG 59.764 54.545 0.00 0.00 37.73 4.00
4502 4599 4.678538 AGAGAACTAACCTGGGTCTACT 57.321 45.455 0.00 0.00 0.00 2.57
4503 4600 5.360429 CCTTAGAGAACTAACCTGGGTCTAC 59.640 48.000 0.00 0.00 35.19 2.59
4516 4613 6.299141 TGTCATTTTTGCTCCTTAGAGAACT 58.701 36.000 0.00 0.00 43.39 3.01
4519 4616 6.716628 ACATTGTCATTTTTGCTCCTTAGAGA 59.283 34.615 0.00 0.00 43.39 3.10
4527 4624 5.630680 CACCACTACATTGTCATTTTTGCTC 59.369 40.000 0.00 0.00 0.00 4.26
4532 4629 5.726980 ATGCACCACTACATTGTCATTTT 57.273 34.783 0.00 0.00 0.00 1.82
4573 4673 4.519213 TGGAAACTTGAGACGAGGAAAAA 58.481 39.130 0.00 0.00 0.00 1.94
4578 4678 3.003480 GGATTGGAAACTTGAGACGAGG 58.997 50.000 0.00 0.00 0.00 4.63
4592 4692 1.617850 GTTGCATTGTGGTGGATTGGA 59.382 47.619 0.00 0.00 0.00 3.53
4597 4697 5.321102 AGTTATTAGTTGCATTGTGGTGGA 58.679 37.500 0.00 0.00 0.00 4.02
4605 4705 4.887655 GGGCCAGTAGTTATTAGTTGCATT 59.112 41.667 4.39 0.00 0.00 3.56
4614 4714 2.679930 GCGTCAAGGGCCAGTAGTTATT 60.680 50.000 6.18 0.00 0.00 1.40
4628 4728 3.416119 TTAGTAGACGGATGCGTCAAG 57.584 47.619 35.92 3.67 40.96 3.02
4629 4729 3.490249 CCATTAGTAGACGGATGCGTCAA 60.490 47.826 35.92 23.69 40.96 3.18
4630 4730 2.034179 CCATTAGTAGACGGATGCGTCA 59.966 50.000 35.92 21.60 40.96 4.35
4631 4731 2.034305 ACCATTAGTAGACGGATGCGTC 59.966 50.000 29.68 29.68 39.01 5.19
4632 4732 2.029623 ACCATTAGTAGACGGATGCGT 58.970 47.619 13.64 13.64 0.00 5.24
4633 4733 2.394708 CACCATTAGTAGACGGATGCG 58.605 52.381 4.58 4.58 0.00 4.73
4634 4734 2.548067 CCCACCATTAGTAGACGGATGC 60.548 54.545 0.00 0.00 0.00 3.91
4635 4735 2.963101 TCCCACCATTAGTAGACGGATG 59.037 50.000 0.00 0.00 0.00 3.51
4636 4736 2.963782 GTCCCACCATTAGTAGACGGAT 59.036 50.000 0.00 0.00 0.00 4.18
4637 4737 2.291735 TGTCCCACCATTAGTAGACGGA 60.292 50.000 0.00 0.00 34.92 4.69
4638 4738 2.104967 TGTCCCACCATTAGTAGACGG 58.895 52.381 0.00 0.00 34.92 4.79
4639 4739 3.194968 ACTTGTCCCACCATTAGTAGACG 59.805 47.826 0.00 0.00 34.92 4.18
4640 4740 4.222145 TCACTTGTCCCACCATTAGTAGAC 59.778 45.833 0.00 0.00 33.50 2.59
4641 4741 4.422057 TCACTTGTCCCACCATTAGTAGA 58.578 43.478 0.00 0.00 0.00 2.59
4642 4742 4.819105 TCACTTGTCCCACCATTAGTAG 57.181 45.455 0.00 0.00 0.00 2.57
4643 4743 4.263156 GGTTCACTTGTCCCACCATTAGTA 60.263 45.833 0.00 0.00 0.00 1.82
4644 4744 3.497942 GGTTCACTTGTCCCACCATTAGT 60.498 47.826 0.00 0.00 0.00 2.24
4645 4745 3.081804 GGTTCACTTGTCCCACCATTAG 58.918 50.000 0.00 0.00 0.00 1.73
4646 4746 2.551287 CGGTTCACTTGTCCCACCATTA 60.551 50.000 0.00 0.00 0.00 1.90
4647 4747 1.817740 CGGTTCACTTGTCCCACCATT 60.818 52.381 0.00 0.00 0.00 3.16
4648 4748 0.250727 CGGTTCACTTGTCCCACCAT 60.251 55.000 0.00 0.00 0.00 3.55
4649 4749 1.147376 CGGTTCACTTGTCCCACCA 59.853 57.895 0.00 0.00 0.00 4.17
4650 4750 0.036306 ATCGGTTCACTTGTCCCACC 59.964 55.000 0.00 0.00 0.00 4.61
4651 4751 2.754946 TATCGGTTCACTTGTCCCAC 57.245 50.000 0.00 0.00 0.00 4.61
4652 4752 3.262151 TGATTATCGGTTCACTTGTCCCA 59.738 43.478 0.00 0.00 0.00 4.37
4653 4753 3.869065 TGATTATCGGTTCACTTGTCCC 58.131 45.455 0.00 0.00 0.00 4.46
4654 4754 6.761714 AGTTATGATTATCGGTTCACTTGTCC 59.238 38.462 0.00 0.00 0.00 4.02
4655 4755 7.042658 GGAGTTATGATTATCGGTTCACTTGTC 60.043 40.741 0.00 0.00 0.00 3.18
4656 4756 6.761714 GGAGTTATGATTATCGGTTCACTTGT 59.238 38.462 0.00 0.00 0.00 3.16
4657 4757 6.761242 TGGAGTTATGATTATCGGTTCACTTG 59.239 38.462 0.00 0.00 0.00 3.16
4658 4758 6.884832 TGGAGTTATGATTATCGGTTCACTT 58.115 36.000 0.00 0.00 0.00 3.16
4659 4759 6.479972 TGGAGTTATGATTATCGGTTCACT 57.520 37.500 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.