Multiple sequence alignment - TraesCS6A01G247300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G247300 chr6A 100.000 2539 0 0 1 2539 459506665 459509203 0.000000e+00 4689
1 TraesCS6A01G247300 chr6A 86.420 243 29 4 543 782 601961129 601961370 1.940000e-66 263
2 TraesCS6A01G247300 chr6B 93.838 1769 71 18 1 1742 501555816 501554059 0.000000e+00 2628
3 TraesCS6A01G247300 chr6B 95.000 480 20 2 1942 2418 501553583 501553105 0.000000e+00 750
4 TraesCS6A01G247300 chr6B 90.000 120 11 1 2420 2538 501525380 501525261 1.220000e-33 154
5 TraesCS6A01G247300 chr6D 94.376 1049 43 8 800 1844 321988085 321989121 0.000000e+00 1596
6 TraesCS6A01G247300 chr6D 91.502 812 38 11 1 804 321987201 321987989 0.000000e+00 1088
7 TraesCS6A01G247300 chr6D 91.547 556 22 4 1889 2442 321989597 321990129 0.000000e+00 743
8 TraesCS6A01G247300 chr2D 87.391 230 25 3 564 791 620601572 620601799 6.970000e-66 261
9 TraesCS6A01G247300 chr2D 84.483 232 30 6 564 793 645896752 645896525 9.140000e-55 224
10 TraesCS6A01G247300 chr4A 84.436 257 36 4 540 794 160254829 160254575 1.510000e-62 250
11 TraesCS6A01G247300 chr4A 86.147 231 28 3 564 794 625241762 625241536 1.950000e-61 246
12 TraesCS6A01G247300 chr5B 87.054 224 24 5 564 784 581133001 581132780 5.420000e-62 248
13 TraesCS6A01G247300 chr4D 84.109 258 36 5 540 794 315080261 315080516 7.020000e-61 244


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G247300 chr6A 459506665 459509203 2538 False 4689.000000 4689 100.000 1 2539 1 chr6A.!!$F1 2538
1 TraesCS6A01G247300 chr6B 501553105 501555816 2711 True 1689.000000 2628 94.419 1 2418 2 chr6B.!!$R2 2417
2 TraesCS6A01G247300 chr6D 321987201 321990129 2928 False 1142.333333 1596 92.475 1 2442 3 chr6D.!!$F1 2441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 338 0.824182 AGGGGACGGATCGAGACATC 60.824 60.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2781 0.107848 GCTGTACATGTACCGGCCTT 60.108 55.0 28.67 0.0 35.26 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.076100 TGATTCAGACATGTCAACGGC 58.924 47.619 27.02 13.56 0.00 5.68
35 36 1.398390 GATTCAGACATGTCAACGGCC 59.602 52.381 27.02 8.27 0.00 6.13
84 90 0.889994 TACAGCAGCCAGGCAAATTG 59.110 50.000 15.80 8.87 35.83 2.32
100 106 4.201685 GCAAATTGATCATCAAGCAACAGC 60.202 41.667 6.19 0.94 40.05 4.40
103 109 4.587584 TTGATCATCAAGCAACAGCAAA 57.412 36.364 0.00 0.00 31.83 3.68
104 110 4.587584 TGATCATCAAGCAACAGCAAAA 57.412 36.364 0.00 0.00 0.00 2.44
145 151 3.314541 ACTTGGTCACATCGAAGGTAC 57.685 47.619 0.00 0.00 0.00 3.34
190 196 6.382570 TCAATTTGATTATGGGGTTAGGGTTG 59.617 38.462 0.00 0.00 0.00 3.77
305 317 7.029563 GGTTGCTTACAAAATCTGTATCAAGG 58.970 38.462 0.00 0.00 40.27 3.61
326 338 0.824182 AGGGGACGGATCGAGACATC 60.824 60.000 0.00 0.00 0.00 3.06
334 346 1.135046 GATCGAGACATCCATGTGCG 58.865 55.000 0.00 1.47 41.95 5.34
336 348 2.528743 CGAGACATCCATGTGCGGC 61.529 63.158 0.00 0.00 41.95 6.53
530 542 8.181573 AGTTTGTTACTGTACAATCAACACTTG 58.818 33.333 13.31 0.00 37.81 3.16
554 566 7.390823 TGTTGAATTACAGTACTGCCTTCATA 58.609 34.615 22.90 15.59 30.86 2.15
557 569 8.662781 TGAATTACAGTACTGCCTTCATATTC 57.337 34.615 22.90 17.80 0.00 1.75
594 607 8.977505 CCACTTCGTTTTTCATGTCATATTTTT 58.022 29.630 0.00 0.00 0.00 1.94
599 612 9.393249 TCGTTTTTCATGTCATATTTTTGACTC 57.607 29.630 6.20 0.00 45.07 3.36
613 626 6.452494 TTTTTGACTCGTAATTTTGGTCCA 57.548 33.333 0.00 0.00 0.00 4.02
615 628 3.061322 TGACTCGTAATTTTGGTCCACG 58.939 45.455 0.00 0.00 0.00 4.94
634 647 6.569780 TCCACGGAATATGGATTATATGTCG 58.430 40.000 0.00 0.00 41.47 4.35
1167 1288 0.604780 GCAGCAGCAAGTCTTCCTCA 60.605 55.000 0.00 0.00 41.58 3.86
1191 1312 2.278330 CCAGGTTTGCTTCAGCCCC 61.278 63.158 0.00 0.00 41.18 5.80
1198 1319 1.108727 TTGCTTCAGCCCCAACACAG 61.109 55.000 0.00 0.00 41.18 3.66
1200 1321 1.518903 GCTTCAGCCCCAACACAGTC 61.519 60.000 0.00 0.00 34.31 3.51
1222 1343 5.292589 GTCCGGTTAAACATCATAACGTCAT 59.707 40.000 0.00 0.00 34.74 3.06
1259 1382 4.017130 ACATTGCCCTCCCTTTCTCTATTT 60.017 41.667 0.00 0.00 0.00 1.40
1268 1391 6.372937 CCTCCCTTTCTCTATTTGTGTTTCTC 59.627 42.308 0.00 0.00 0.00 2.87
1278 1401 3.953712 TTGTGTTTCTCTAGGATGCGA 57.046 42.857 0.00 0.00 0.00 5.10
1302 1425 1.509923 GTTGCTGATGCCCAGAAGC 59.490 57.895 7.32 0.00 45.78 3.86
1333 1456 2.679837 GCTCGTTGATGGTTCATGATGT 59.320 45.455 0.00 0.00 0.00 3.06
1374 1497 1.227380 GGAAGCGGCATCGATCAGT 60.227 57.895 1.45 0.00 39.00 3.41
1478 1601 1.959899 CTCATCGCAAGCACGTGGAC 61.960 60.000 18.88 0.66 37.18 4.02
1675 1801 0.882042 ACCAGCAGCTTCAAGTCGTG 60.882 55.000 0.00 0.00 0.00 4.35
1785 1919 2.060980 TTTGGGTGGGTTGTGGTGC 61.061 57.895 0.00 0.00 0.00 5.01
1796 1930 0.537143 TTGTGGTGCTGTAGGCTTGG 60.537 55.000 0.00 0.00 42.39 3.61
1797 1931 1.374947 GTGGTGCTGTAGGCTTGGA 59.625 57.895 0.00 0.00 42.39 3.53
1798 1932 0.674895 GTGGTGCTGTAGGCTTGGAG 60.675 60.000 0.00 0.00 42.39 3.86
1799 1933 1.127567 TGGTGCTGTAGGCTTGGAGT 61.128 55.000 0.00 0.00 42.39 3.85
1800 1934 0.902531 GGTGCTGTAGGCTTGGAGTA 59.097 55.000 0.00 0.00 42.39 2.59
1801 1935 1.405661 GGTGCTGTAGGCTTGGAGTAC 60.406 57.143 0.00 0.00 42.39 2.73
1831 2041 6.231951 AGTTAGCGACAGAGTATAGATAGCA 58.768 40.000 0.00 0.00 0.00 3.49
1832 2042 6.711194 AGTTAGCGACAGAGTATAGATAGCAA 59.289 38.462 0.00 0.00 0.00 3.91
1835 2045 5.533154 AGCGACAGAGTATAGATAGCAAAGT 59.467 40.000 0.00 0.00 0.00 2.66
1836 2046 6.039941 AGCGACAGAGTATAGATAGCAAAGTT 59.960 38.462 0.00 0.00 0.00 2.66
1899 2540 4.213596 TGCACATACTATACACGTACCG 57.786 45.455 0.00 0.00 0.00 4.02
1921 2562 6.151144 ACCGATTCTGCACTTAATTAGCTTTT 59.849 34.615 0.00 0.00 0.00 2.27
1922 2563 6.688813 CCGATTCTGCACTTAATTAGCTTTTC 59.311 38.462 0.00 0.00 0.00 2.29
1933 2574 8.557450 ACTTAATTAGCTTTTCTATTCCCTGGA 58.443 33.333 0.00 0.00 0.00 3.86
1959 2790 9.601810 ATCATATATATCTCATAAAGGCCGGTA 57.398 33.333 1.90 0.00 0.00 4.02
2061 2892 0.035725 TCTCGTGGCTCTAACGGAGA 60.036 55.000 0.00 0.00 44.45 3.71
2070 2901 0.818445 TCTAACGGAGAGCGGCTAGG 60.818 60.000 0.60 0.00 0.00 3.02
2221 3052 3.144657 TGAGCTTGCCTCTGAATGAAA 57.855 42.857 0.00 0.00 41.35 2.69
2431 3267 5.230942 AGTAGATGCCATAACATAAGCGTC 58.769 41.667 0.00 0.00 40.74 5.19
2446 3282 9.959749 AACATAAGCGTCTTCTTATTTTTGAAA 57.040 25.926 0.00 0.00 37.20 2.69
2450 3286 8.507470 AAGCGTCTTCTTATTTTTGAAATGAC 57.493 30.769 0.00 0.00 0.00 3.06
2451 3287 7.875971 AGCGTCTTCTTATTTTTGAAATGACT 58.124 30.769 0.00 0.00 0.00 3.41
2452 3288 8.352942 AGCGTCTTCTTATTTTTGAAATGACTT 58.647 29.630 0.00 0.00 0.00 3.01
2453 3289 8.420189 GCGTCTTCTTATTTTTGAAATGACTTG 58.580 33.333 0.00 0.00 0.00 3.16
2454 3290 9.663904 CGTCTTCTTATTTTTGAAATGACTTGA 57.336 29.630 0.00 0.00 0.00 3.02
2473 3309 9.249053 TGACTTGATAAATTAAATGTTAGCCCA 57.751 29.630 0.00 0.00 0.00 5.36
2474 3310 9.736023 GACTTGATAAATTAAATGTTAGCCCAG 57.264 33.333 0.00 0.00 0.00 4.45
2475 3311 9.474313 ACTTGATAAATTAAATGTTAGCCCAGA 57.526 29.630 0.00 0.00 0.00 3.86
2476 3312 9.956720 CTTGATAAATTAAATGTTAGCCCAGAG 57.043 33.333 0.00 0.00 0.00 3.35
2477 3313 9.693739 TTGATAAATTAAATGTTAGCCCAGAGA 57.306 29.630 0.00 0.00 0.00 3.10
2478 3314 9.342308 TGATAAATTAAATGTTAGCCCAGAGAG 57.658 33.333 0.00 0.00 0.00 3.20
2479 3315 9.561069 GATAAATTAAATGTTAGCCCAGAGAGA 57.439 33.333 0.00 0.00 0.00 3.10
2480 3316 7.872113 AAATTAAATGTTAGCCCAGAGAGAG 57.128 36.000 0.00 0.00 0.00 3.20
2481 3317 3.922171 AAATGTTAGCCCAGAGAGAGG 57.078 47.619 0.00 0.00 0.00 3.69
2482 3318 2.856760 ATGTTAGCCCAGAGAGAGGA 57.143 50.000 0.00 0.00 0.00 3.71
2483 3319 2.151502 TGTTAGCCCAGAGAGAGGAG 57.848 55.000 0.00 0.00 0.00 3.69
2484 3320 1.641192 TGTTAGCCCAGAGAGAGGAGA 59.359 52.381 0.00 0.00 0.00 3.71
2485 3321 2.246067 TGTTAGCCCAGAGAGAGGAGAT 59.754 50.000 0.00 0.00 0.00 2.75
2486 3322 2.627699 GTTAGCCCAGAGAGAGGAGATG 59.372 54.545 0.00 0.00 0.00 2.90
2487 3323 0.760189 AGCCCAGAGAGAGGAGATGC 60.760 60.000 0.00 0.00 0.00 3.91
2488 3324 2.040330 CCCAGAGAGAGGAGATGCG 58.960 63.158 0.00 0.00 0.00 4.73
2489 3325 0.467106 CCCAGAGAGAGGAGATGCGA 60.467 60.000 0.00 0.00 0.00 5.10
2490 3326 0.667993 CCAGAGAGAGGAGATGCGAC 59.332 60.000 0.00 0.00 0.00 5.19
2491 3327 1.679139 CAGAGAGAGGAGATGCGACT 58.321 55.000 0.00 0.00 0.00 4.18
2492 3328 2.486370 CCAGAGAGAGGAGATGCGACTA 60.486 54.545 0.00 0.00 0.00 2.59
2493 3329 2.548057 CAGAGAGAGGAGATGCGACTAC 59.452 54.545 0.00 0.00 0.00 2.73
2494 3330 2.438021 AGAGAGAGGAGATGCGACTACT 59.562 50.000 0.00 0.00 33.23 2.57
2495 3331 3.644265 AGAGAGAGGAGATGCGACTACTA 59.356 47.826 0.00 0.00 30.33 1.82
2496 3332 4.101898 AGAGAGAGGAGATGCGACTACTAA 59.898 45.833 0.00 0.00 30.33 2.24
2497 3333 4.131596 AGAGAGGAGATGCGACTACTAAC 58.868 47.826 0.00 0.00 30.33 2.34
2498 3334 3.878103 GAGAGGAGATGCGACTACTAACA 59.122 47.826 0.00 0.00 30.33 2.41
2499 3335 4.270834 AGAGGAGATGCGACTACTAACAA 58.729 43.478 0.00 0.00 30.33 2.83
2500 3336 4.096682 AGAGGAGATGCGACTACTAACAAC 59.903 45.833 0.00 0.00 30.33 3.32
2501 3337 3.762288 AGGAGATGCGACTACTAACAACA 59.238 43.478 0.00 0.00 0.00 3.33
2502 3338 4.106197 GGAGATGCGACTACTAACAACAG 58.894 47.826 0.00 0.00 0.00 3.16
2503 3339 4.380655 GGAGATGCGACTACTAACAACAGT 60.381 45.833 0.00 0.00 0.00 3.55
2504 3340 5.163683 GGAGATGCGACTACTAACAACAGTA 60.164 44.000 0.00 0.00 0.00 2.74
2505 3341 6.452494 AGATGCGACTACTAACAACAGTAT 57.548 37.500 0.00 0.00 30.78 2.12
2506 3342 6.864342 AGATGCGACTACTAACAACAGTATT 58.136 36.000 0.00 0.00 30.78 1.89
2507 3343 6.973474 AGATGCGACTACTAACAACAGTATTC 59.027 38.462 0.00 0.00 30.78 1.75
2508 3344 6.016213 TGCGACTACTAACAACAGTATTCA 57.984 37.500 0.00 0.00 32.84 2.57
2509 3345 5.860182 TGCGACTACTAACAACAGTATTCAC 59.140 40.000 0.00 0.00 32.84 3.18
2510 3346 5.860182 GCGACTACTAACAACAGTATTCACA 59.140 40.000 0.00 0.00 32.84 3.58
2511 3347 6.530534 GCGACTACTAACAACAGTATTCACAT 59.469 38.462 0.00 0.00 32.84 3.21
2512 3348 7.699391 GCGACTACTAACAACAGTATTCACATA 59.301 37.037 0.00 0.00 32.84 2.29
2513 3349 9.563898 CGACTACTAACAACAGTATTCACATAA 57.436 33.333 0.00 0.00 32.84 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.645802 TCCGGAATTTGTTAATCGGGG 58.354 47.619 0.00 0.00 33.94 5.73
35 36 4.417506 GTTTCCGGAATTTGTTAATCGGG 58.582 43.478 19.62 0.00 33.94 5.14
84 90 4.986659 ACTTTTTGCTGTTGCTTGATGATC 59.013 37.500 0.00 0.00 40.48 2.92
100 106 5.891451 GGCATACTTAAGCCCTACTTTTTG 58.109 41.667 1.29 0.00 45.18 2.44
282 292 7.994425 TCCTTGATACAGATTTTGTAAGCAA 57.006 32.000 0.00 0.14 45.00 3.91
286 296 6.889722 CCCCTTCCTTGATACAGATTTTGTAA 59.110 38.462 0.00 0.00 45.00 2.41
305 317 1.035932 TGTCTCGATCCGTCCCCTTC 61.036 60.000 0.00 0.00 0.00 3.46
326 338 0.107456 ATCTCCTTAGCCGCACATGG 59.893 55.000 0.00 0.00 0.00 3.66
334 346 0.250252 GCAGAGCCATCTCCTTAGCC 60.250 60.000 0.00 0.00 40.22 3.93
399 411 5.622041 CCGTACGAAAATGTGGTAAACAAAG 59.378 40.000 18.76 0.00 43.61 2.77
530 542 6.743575 ATGAAGGCAGTACTGTAATTCAAC 57.256 37.500 27.67 11.85 34.61 3.18
554 566 2.017049 GAAGTGGCCTTGCGTATGAAT 58.983 47.619 3.32 0.00 0.00 2.57
557 569 1.019278 ACGAAGTGGCCTTGCGTATG 61.019 55.000 11.54 0.00 42.51 2.39
594 607 3.061322 CGTGGACCAAAATTACGAGTCA 58.939 45.455 0.00 0.00 36.94 3.41
599 612 5.504994 CCATATTCCGTGGACCAAAATTACG 60.505 44.000 0.00 0.00 39.12 3.18
613 626 9.932207 TTTTACGACATATAATCCATATTCCGT 57.068 29.630 0.00 0.00 38.06 4.69
935 1056 5.822204 AGGTAAGAGAGCTTAGAGAAGTGA 58.178 41.667 0.00 0.00 37.28 3.41
1167 1288 2.731572 CTGAAGCAAACCTGGGATGAT 58.268 47.619 0.00 0.00 0.00 2.45
1191 1312 3.562141 TGATGTTTAACCGGACTGTGTTG 59.438 43.478 9.46 0.00 0.00 3.33
1198 1319 4.626604 TGACGTTATGATGTTTAACCGGAC 59.373 41.667 9.46 0.00 0.00 4.79
1200 1321 5.555631 CGATGACGTTATGATGTTTAACCGG 60.556 44.000 0.00 0.00 34.56 5.28
1222 1343 4.764823 AGGGCAATGTTAGAACAAAATCGA 59.235 37.500 0.00 0.00 43.03 3.59
1259 1382 2.560981 TGTCGCATCCTAGAGAAACACA 59.439 45.455 0.00 0.00 0.00 3.72
1268 1391 1.804372 GCAACCTCTGTCGCATCCTAG 60.804 57.143 0.00 0.00 0.00 3.02
1278 1401 1.001641 GGGCATCAGCAACCTCTGT 60.002 57.895 0.00 0.00 44.61 3.41
1333 1456 2.660064 GCTCGAGCCTTCTTCCCCA 61.660 63.158 27.22 0.00 34.31 4.96
1675 1801 6.979238 ACTAGAAATATAGCGGAAACACAGAC 59.021 38.462 0.00 0.00 0.00 3.51
1707 1833 5.396484 CGAACTCTGTCATCAAAATTGCAT 58.604 37.500 0.00 0.00 0.00 3.96
1719 1846 6.150474 TCAATATATATCGGCGAACTCTGTCA 59.850 38.462 15.93 0.00 0.00 3.58
1752 1886 0.593128 CCAAACTGAAGCTTGTCCGG 59.407 55.000 2.10 0.00 0.00 5.14
1785 1919 3.292460 AGCTAGTACTCCAAGCCTACAG 58.708 50.000 11.67 0.00 36.92 2.74
1796 1930 5.049167 TCTGTCGCTAACTAGCTAGTACTC 58.951 45.833 26.29 15.87 46.85 2.59
1797 1931 5.021033 TCTGTCGCTAACTAGCTAGTACT 57.979 43.478 26.29 14.52 46.85 2.73
1798 1932 4.810491 ACTCTGTCGCTAACTAGCTAGTAC 59.190 45.833 26.29 19.54 46.85 2.73
1799 1933 5.021033 ACTCTGTCGCTAACTAGCTAGTA 57.979 43.478 26.29 13.46 46.85 1.82
1800 1934 3.876341 ACTCTGTCGCTAACTAGCTAGT 58.124 45.455 20.95 20.95 46.85 2.57
1801 1935 7.092079 TCTATACTCTGTCGCTAACTAGCTAG 58.908 42.308 19.44 19.44 46.85 3.42
1852 2062 8.532186 TTCTCATCTGAGCTATCTCTACTTTT 57.468 34.615 2.21 0.00 41.80 2.27
1856 2066 6.072008 TGCATTCTCATCTGAGCTATCTCTAC 60.072 42.308 2.21 0.00 41.80 2.59
1857 2067 6.008960 TGCATTCTCATCTGAGCTATCTCTA 58.991 40.000 2.21 0.00 41.80 2.43
1858 2068 4.833938 TGCATTCTCATCTGAGCTATCTCT 59.166 41.667 2.21 0.00 41.80 3.10
1859 2069 4.925054 GTGCATTCTCATCTGAGCTATCTC 59.075 45.833 2.21 0.00 41.80 2.75
1860 2070 4.344390 TGTGCATTCTCATCTGAGCTATCT 59.656 41.667 2.21 0.00 41.80 1.98
1933 2574 8.497910 ACCGGCCTTTATGAGATATATATGAT 57.502 34.615 0.00 0.00 0.00 2.45
1950 2781 0.107848 GCTGTACATGTACCGGCCTT 60.108 55.000 28.67 0.00 35.26 4.35
1959 2790 2.292828 AAAGGGCAAGCTGTACATGT 57.707 45.000 2.69 2.69 0.00 3.21
2061 2892 1.528292 CGCCTTAGATCCTAGCCGCT 61.528 60.000 0.00 0.00 0.00 5.52
2064 2895 0.604073 GGTCGCCTTAGATCCTAGCC 59.396 60.000 0.00 0.00 0.00 3.93
2070 2901 0.527817 CACGGTGGTCGCCTTAGATC 60.528 60.000 0.00 0.00 43.89 2.75
2221 3052 3.819368 TGACCGATCCATGCATGTAAAT 58.181 40.909 24.58 14.78 0.00 1.40
2428 3264 9.663904 TCAAGTCATTTCAAAAATAAGAAGACG 57.336 29.630 0.00 0.00 29.43 4.18
2447 3283 9.249053 TGGGCTAACATTTAATTTATCAAGTCA 57.751 29.630 0.00 0.00 0.00 3.41
2448 3284 9.736023 CTGGGCTAACATTTAATTTATCAAGTC 57.264 33.333 0.00 0.00 0.00 3.01
2449 3285 9.474313 TCTGGGCTAACATTTAATTTATCAAGT 57.526 29.630 0.00 0.00 0.00 3.16
2450 3286 9.956720 CTCTGGGCTAACATTTAATTTATCAAG 57.043 33.333 0.00 0.00 0.00 3.02
2451 3287 9.693739 TCTCTGGGCTAACATTTAATTTATCAA 57.306 29.630 0.00 0.00 0.00 2.57
2452 3288 9.342308 CTCTCTGGGCTAACATTTAATTTATCA 57.658 33.333 0.00 0.00 0.00 2.15
2453 3289 9.561069 TCTCTCTGGGCTAACATTTAATTTATC 57.439 33.333 0.00 0.00 0.00 1.75
2454 3290 9.566432 CTCTCTCTGGGCTAACATTTAATTTAT 57.434 33.333 0.00 0.00 0.00 1.40
2455 3291 7.993183 CCTCTCTCTGGGCTAACATTTAATTTA 59.007 37.037 0.00 0.00 0.00 1.40
2456 3292 6.830838 CCTCTCTCTGGGCTAACATTTAATTT 59.169 38.462 0.00 0.00 0.00 1.82
2457 3293 6.158695 TCCTCTCTCTGGGCTAACATTTAATT 59.841 38.462 0.00 0.00 0.00 1.40
2458 3294 5.667626 TCCTCTCTCTGGGCTAACATTTAAT 59.332 40.000 0.00 0.00 0.00 1.40
2459 3295 5.030147 TCCTCTCTCTGGGCTAACATTTAA 58.970 41.667 0.00 0.00 0.00 1.52
2460 3296 4.620723 TCCTCTCTCTGGGCTAACATTTA 58.379 43.478 0.00 0.00 0.00 1.40
2461 3297 3.454082 CTCCTCTCTCTGGGCTAACATTT 59.546 47.826 0.00 0.00 0.00 2.32
2462 3298 3.037549 CTCCTCTCTCTGGGCTAACATT 58.962 50.000 0.00 0.00 0.00 2.71
2463 3299 2.246067 TCTCCTCTCTCTGGGCTAACAT 59.754 50.000 0.00 0.00 0.00 2.71
2464 3300 1.641192 TCTCCTCTCTCTGGGCTAACA 59.359 52.381 0.00 0.00 0.00 2.41
2465 3301 2.445682 TCTCCTCTCTCTGGGCTAAC 57.554 55.000 0.00 0.00 0.00 2.34
2466 3302 2.956132 CATCTCCTCTCTCTGGGCTAA 58.044 52.381 0.00 0.00 0.00 3.09
2467 3303 1.480312 GCATCTCCTCTCTCTGGGCTA 60.480 57.143 0.00 0.00 0.00 3.93
2468 3304 0.760189 GCATCTCCTCTCTCTGGGCT 60.760 60.000 0.00 0.00 0.00 5.19
2469 3305 1.747774 GCATCTCCTCTCTCTGGGC 59.252 63.158 0.00 0.00 0.00 5.36
2470 3306 0.467106 TCGCATCTCCTCTCTCTGGG 60.467 60.000 0.00 0.00 0.00 4.45
2471 3307 0.667993 GTCGCATCTCCTCTCTCTGG 59.332 60.000 0.00 0.00 0.00 3.86
2472 3308 1.679139 AGTCGCATCTCCTCTCTCTG 58.321 55.000 0.00 0.00 0.00 3.35
2473 3309 2.438021 AGTAGTCGCATCTCCTCTCTCT 59.562 50.000 0.00 0.00 0.00 3.10
2474 3310 2.846193 AGTAGTCGCATCTCCTCTCTC 58.154 52.381 0.00 0.00 0.00 3.20
2475 3311 4.131596 GTTAGTAGTCGCATCTCCTCTCT 58.868 47.826 0.00 0.00 0.00 3.10
2476 3312 3.878103 TGTTAGTAGTCGCATCTCCTCTC 59.122 47.826 0.00 0.00 0.00 3.20
2477 3313 3.887352 TGTTAGTAGTCGCATCTCCTCT 58.113 45.455 0.00 0.00 0.00 3.69
2478 3314 4.142447 TGTTGTTAGTAGTCGCATCTCCTC 60.142 45.833 0.00 0.00 0.00 3.71
2479 3315 3.762288 TGTTGTTAGTAGTCGCATCTCCT 59.238 43.478 0.00 0.00 0.00 3.69
2480 3316 4.106029 TGTTGTTAGTAGTCGCATCTCC 57.894 45.455 0.00 0.00 0.00 3.71
2481 3317 4.734917 ACTGTTGTTAGTAGTCGCATCTC 58.265 43.478 0.00 0.00 0.00 2.75
2482 3318 4.785511 ACTGTTGTTAGTAGTCGCATCT 57.214 40.909 0.00 0.00 0.00 2.90
2483 3319 6.750501 TGAATACTGTTGTTAGTAGTCGCATC 59.249 38.462 8.31 0.00 45.99 3.91
2484 3320 6.627243 TGAATACTGTTGTTAGTAGTCGCAT 58.373 36.000 8.31 0.00 45.99 4.73
2485 3321 6.016213 TGAATACTGTTGTTAGTAGTCGCA 57.984 37.500 8.31 0.00 45.99 5.10
2486 3322 6.315274 GTGAATACTGTTGTTAGTAGTCGC 57.685 41.667 9.99 9.99 45.99 5.19
2487 3323 9.563898 TTATGTGAATACTGTTGTTAGTAGTCG 57.436 33.333 8.31 0.00 45.99 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.