Multiple sequence alignment - TraesCS6A01G246700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G246700 chr6A 100.000 4334 0 0 1 4334 457616363 457620696 0.000000e+00 8004.0
1 TraesCS6A01G246700 chr6A 87.828 534 59 6 2 533 6997320 6996791 4.760000e-174 621.0
2 TraesCS6A01G246700 chr6A 91.045 134 12 0 3332 3465 24845066 24844933 9.570000e-42 182.0
3 TraesCS6A01G246700 chr6D 95.896 3338 116 12 1 3333 320111090 320114411 0.000000e+00 5385.0
4 TraesCS6A01G246700 chr6D 85.078 449 64 3 3887 4334 320115996 320116442 5.110000e-124 455.0
5 TraesCS6A01G246700 chr6D 94.030 67 4 0 3566 3632 320115376 320115442 7.670000e-18 102.0
6 TraesCS6A01G246700 chr6D 93.478 46 3 0 3589 3634 320115879 320115924 7.780000e-08 69.4
7 TraesCS6A01G246700 chr6B 96.782 2766 68 9 568 3332 502794601 502791856 0.000000e+00 4595.0
8 TraesCS6A01G246700 chr6B 86.379 580 73 5 1 576 188722966 188722389 2.840000e-176 628.0
9 TraesCS6A01G246700 chr5D 89.317 571 57 4 1 569 296662354 296662922 0.000000e+00 713.0
10 TraesCS6A01G246700 chr5D 90.217 92 8 1 2338 2429 59236957 59236867 7.610000e-23 119.0
11 TraesCS6A01G246700 chr2A 86.874 579 64 6 1 569 32819020 32819596 4.730000e-179 638.0
12 TraesCS6A01G246700 chr2A 77.686 121 25 2 2364 2483 761622397 761622278 6.010000e-09 73.1
13 TraesCS6A01G246700 chr5B 86.806 576 68 6 1 572 6875006 6874435 1.700000e-178 636.0
14 TraesCS6A01G246700 chr7A 86.159 578 73 7 3 576 668775404 668775978 6.160000e-173 617.0
15 TraesCS6A01G246700 chr7A 71.912 591 127 33 2162 2737 680576028 680575462 7.560000e-28 135.0
16 TraesCS6A01G246700 chr7D 86.063 574 67 10 1 572 478376505 478375943 4.790000e-169 604.0
17 TraesCS6A01G246700 chr7D 73.933 445 87 23 2162 2596 589318186 589317761 7.510000e-33 152.0
18 TraesCS6A01G246700 chr3D 85.147 579 80 6 1 576 576159904 576160479 4.830000e-164 588.0
19 TraesCS6A01G246700 chr2B 96.324 136 5 0 3331 3466 1665744 1665879 1.570000e-54 224.0
20 TraesCS6A01G246700 chr2B 90.361 83 7 1 2351 2433 716287857 716287938 1.650000e-19 108.0
21 TraesCS6A01G246700 chr5A 96.154 130 5 0 3334 3463 617897201 617897330 3.400000e-51 213.0
22 TraesCS6A01G246700 chr5A 94.030 134 8 0 3330 3463 394810423 394810556 2.040000e-48 204.0
23 TraesCS6A01G246700 chr7B 73.699 346 69 16 2153 2493 663488453 663488781 9.850000e-22 115.0
24 TraesCS6A01G246700 chr3B 91.139 79 6 1 2351 2429 613570705 613570782 5.930000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G246700 chr6A 457616363 457620696 4333 False 8004.00 8004 100.0000 1 4334 1 chr6A.!!$F1 4333
1 TraesCS6A01G246700 chr6A 6996791 6997320 529 True 621.00 621 87.8280 2 533 1 chr6A.!!$R1 531
2 TraesCS6A01G246700 chr6D 320111090 320116442 5352 False 1502.85 5385 92.1205 1 4334 4 chr6D.!!$F1 4333
3 TraesCS6A01G246700 chr6B 502791856 502794601 2745 True 4595.00 4595 96.7820 568 3332 1 chr6B.!!$R2 2764
4 TraesCS6A01G246700 chr6B 188722389 188722966 577 True 628.00 628 86.3790 1 576 1 chr6B.!!$R1 575
5 TraesCS6A01G246700 chr5D 296662354 296662922 568 False 713.00 713 89.3170 1 569 1 chr5D.!!$F1 568
6 TraesCS6A01G246700 chr2A 32819020 32819596 576 False 638.00 638 86.8740 1 569 1 chr2A.!!$F1 568
7 TraesCS6A01G246700 chr5B 6874435 6875006 571 True 636.00 636 86.8060 1 572 1 chr5B.!!$R1 571
8 TraesCS6A01G246700 chr7A 668775404 668775978 574 False 617.00 617 86.1590 3 576 1 chr7A.!!$F1 573
9 TraesCS6A01G246700 chr7D 478375943 478376505 562 True 604.00 604 86.0630 1 572 1 chr7D.!!$R1 571
10 TraesCS6A01G246700 chr3D 576159904 576160479 575 False 588.00 588 85.1470 1 576 1 chr3D.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 877 0.036765 CAAAAGGCCATGCATGCACT 60.037 50.0 25.37 17.10 0.0 4.40 F
854 880 1.039233 AAGGCCATGCATGCACTACC 61.039 55.0 25.37 22.92 0.0 3.18 F
1871 1899 0.391661 CACGTCCACATCCCCTTCAG 60.392 60.0 0.00 0.00 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1894 1.412606 GCGTTCGAAGTCGCTGAAG 59.587 57.895 21.62 0.00 44.32 3.02 R
2546 2574 1.452108 GGGCAGTGGTAGTGCATCC 60.452 63.158 10.44 0.00 46.06 3.51 R
3681 4577 0.167470 TAGGTCGACTCGAGTTTGCG 59.833 55.000 21.08 18.45 36.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.897141 TCAAGGTGATACAACCGCATA 57.103 42.857 0.00 0.00 45.53 3.14
52 53 3.157087 CATATAAAGAATGCCCGGCCTT 58.843 45.455 7.03 2.66 0.00 4.35
91 94 4.201910 ACACATTCAACAAGTCCAAACGAG 60.202 41.667 0.00 0.00 0.00 4.18
153 156 0.762461 GCCTAGGGTGGAGCAGATCT 60.762 60.000 11.72 0.00 0.00 2.75
244 247 6.582636 AGACGCCATCATAAAAATGTCTCTA 58.417 36.000 0.00 0.00 30.06 2.43
249 252 7.173907 CGCCATCATAAAAATGTCTCTATCCTT 59.826 37.037 0.00 0.00 0.00 3.36
268 271 3.320541 CCTTCGACTTCTGCAGGATAGAT 59.679 47.826 15.13 0.88 0.00 1.98
287 290 1.153647 CAAGTACGGAGCCATCGCA 60.154 57.895 0.00 0.00 37.52 5.10
290 293 1.257743 AGTACGGAGCCATCGCATAT 58.742 50.000 0.00 0.00 37.52 1.78
369 375 0.897863 TGGTAAGCCACAATGCCCAC 60.898 55.000 0.00 0.00 40.46 4.61
383 389 1.173913 GCCCACCATAAGACAACCAC 58.826 55.000 0.00 0.00 0.00 4.16
389 395 1.287739 CCATAAGACAACCACCCCCAT 59.712 52.381 0.00 0.00 0.00 4.00
390 396 2.512056 CCATAAGACAACCACCCCCATA 59.488 50.000 0.00 0.00 0.00 2.74
395 401 4.140575 AGACAACCACCCCCATAAAAAT 57.859 40.909 0.00 0.00 0.00 1.82
409 415 9.594478 CCCCCATAAAAATAATGTACAGAAAAC 57.406 33.333 0.33 0.00 0.00 2.43
423 429 8.500753 TGTACAGAAAACTGTTTGTCAATACT 57.499 30.769 6.53 0.00 38.64 2.12
505 522 6.900194 ACTTAAACTATGACCCATACTGCAT 58.100 36.000 0.00 0.00 0.00 3.96
563 581 5.014858 AGACTCATCATGTTGGCAAAAGAT 58.985 37.500 0.00 2.91 0.00 2.40
598 616 4.350425 CGTATAACGCAGGTTCATAACG 57.650 45.455 0.00 0.00 37.58 3.18
623 641 2.759114 CCTGGCCAAGGCTTGAGA 59.241 61.111 28.18 10.29 39.93 3.27
701 720 0.246757 GCACACGCGATGTTCGTTAG 60.247 55.000 15.93 1.85 40.64 2.34
702 721 1.057636 CACACGCGATGTTCGTTAGT 58.942 50.000 15.93 0.00 40.64 2.24
703 722 2.244251 CACACGCGATGTTCGTTAGTA 58.756 47.619 15.93 0.00 40.64 1.82
720 739 5.620205 CGTTAGTACTCTGCTGAAGTCATGT 60.620 44.000 0.00 0.00 0.00 3.21
740 761 1.063972 CCAACATGGTAATGCGGCG 59.936 57.895 0.51 0.51 37.29 6.46
741 762 1.063972 CAACATGGTAATGCGGCGG 59.936 57.895 9.78 0.00 37.29 6.13
744 765 1.596752 CATGGTAATGCGGCGGCTA 60.597 57.895 17.76 4.42 40.82 3.93
746 767 2.040009 ATGGTAATGCGGCGGCTACT 62.040 55.000 17.76 4.38 40.82 2.57
748 769 1.496403 GGTAATGCGGCGGCTACTTC 61.496 60.000 17.76 4.49 40.82 3.01
750 771 1.682451 TAATGCGGCGGCTACTTCCT 61.682 55.000 17.76 0.00 40.82 3.36
751 772 2.536997 AATGCGGCGGCTACTTCCTT 62.537 55.000 17.76 0.00 40.82 3.36
752 773 2.890961 GCGGCGGCTACTTCCTTC 60.891 66.667 9.78 0.00 35.83 3.46
753 774 2.893398 CGGCGGCTACTTCCTTCT 59.107 61.111 7.61 0.00 0.00 2.85
754 775 1.227002 CGGCGGCTACTTCCTTCTC 60.227 63.158 7.61 0.00 0.00 2.87
755 776 1.668101 CGGCGGCTACTTCCTTCTCT 61.668 60.000 7.61 0.00 0.00 3.10
799 820 2.203280 CCCAACGTCCCACAGCAA 60.203 61.111 0.00 0.00 0.00 3.91
800 821 1.826054 CCCAACGTCCCACAGCAAA 60.826 57.895 0.00 0.00 0.00 3.68
801 822 1.358759 CCAACGTCCCACAGCAAAC 59.641 57.895 0.00 0.00 0.00 2.93
802 823 1.358759 CAACGTCCCACAGCAAACC 59.641 57.895 0.00 0.00 0.00 3.27
803 824 1.077357 AACGTCCCACAGCAAACCA 60.077 52.632 0.00 0.00 0.00 3.67
851 877 0.036765 CAAAAGGCCATGCATGCACT 60.037 50.000 25.37 17.10 0.00 4.40
852 878 1.205179 CAAAAGGCCATGCATGCACTA 59.795 47.619 25.37 0.00 0.00 2.74
854 880 1.039233 AAGGCCATGCATGCACTACC 61.039 55.000 25.37 22.92 0.00 3.18
855 881 2.492773 GGCCATGCATGCACTACCC 61.493 63.158 25.37 16.82 0.00 3.69
1254 1282 1.519455 CCACATCGAGAAGACCGCC 60.519 63.158 0.00 0.00 0.00 6.13
1288 1316 1.737008 GACGTGTTCGCCTTCTCCC 60.737 63.158 0.00 0.00 41.18 4.30
1866 1894 4.796495 GGCCACGTCCACATCCCC 62.796 72.222 0.00 0.00 0.00 4.81
1871 1899 0.391661 CACGTCCACATCCCCTTCAG 60.392 60.000 0.00 0.00 0.00 3.02
1920 1948 1.227176 GATTCGCCCGAGGTGGTAC 60.227 63.158 4.03 0.00 35.15 3.34
2097 2125 2.196997 CTCCCATTGGCCTCGTGGAA 62.197 60.000 19.22 2.34 34.94 3.53
2110 2138 2.668632 TGGAACTCGGCATCCACC 59.331 61.111 0.66 0.00 40.74 4.61
2268 2296 1.079543 CTTCTGGGAGGTGCACGAG 60.080 63.158 11.45 1.62 0.00 4.18
2289 2317 4.539083 TGCACCGTGCTCACCGTT 62.539 61.111 23.52 0.00 45.31 4.44
2475 2503 0.985490 AGAAGATGGGGGAGCTCCAC 60.985 60.000 33.29 30.86 40.15 4.02
3168 3196 2.108514 CACGGCCATGTACCTGCTG 61.109 63.158 2.24 5.84 37.40 4.41
3333 3361 2.134789 AGGTGGATTGCCTGCTTTAG 57.865 50.000 0.00 0.00 34.56 1.85
3342 3370 2.873797 CCTGCTTTAGGCCCTGTTC 58.126 57.895 0.00 0.00 40.38 3.18
3343 3371 1.026718 CCTGCTTTAGGCCCTGTTCG 61.027 60.000 0.00 0.00 40.38 3.95
3344 3372 1.002624 TGCTTTAGGCCCTGTTCGG 60.003 57.895 0.00 0.00 40.92 4.30
3345 3373 1.298667 GCTTTAGGCCCTGTTCGGA 59.701 57.895 0.00 0.00 33.16 4.55
3346 3374 0.322187 GCTTTAGGCCCTGTTCGGAA 60.322 55.000 0.00 0.00 33.16 4.30
3347 3375 1.450025 CTTTAGGCCCTGTTCGGAAC 58.550 55.000 13.86 13.86 33.16 3.62
3348 3376 1.003233 CTTTAGGCCCTGTTCGGAACT 59.997 52.381 20.53 3.18 33.16 3.01
3349 3377 1.061546 TTAGGCCCTGTTCGGAACTT 58.938 50.000 20.53 3.85 33.16 2.66
3350 3378 0.323629 TAGGCCCTGTTCGGAACTTG 59.676 55.000 20.53 13.22 33.16 3.16
3351 3379 1.971695 GGCCCTGTTCGGAACTTGG 60.972 63.158 20.53 19.54 33.16 3.61
3352 3380 2.626780 GCCCTGTTCGGAACTTGGC 61.627 63.158 26.60 26.60 39.99 4.52
3353 3381 1.971695 CCCTGTTCGGAACTTGGCC 60.972 63.158 20.53 0.00 33.16 5.36
3376 3404 4.785453 GCGGAGTTGGGGAGCTGG 62.785 72.222 0.00 0.00 0.00 4.85
3377 3405 4.785453 CGGAGTTGGGGAGCTGGC 62.785 72.222 0.00 0.00 0.00 4.85
3378 3406 3.334054 GGAGTTGGGGAGCTGGCT 61.334 66.667 0.00 0.00 0.00 4.75
3379 3407 2.759795 GAGTTGGGGAGCTGGCTT 59.240 61.111 0.00 0.00 0.00 4.35
3380 3408 1.075659 GAGTTGGGGAGCTGGCTTT 59.924 57.895 0.00 0.00 0.00 3.51
3381 3409 0.540597 GAGTTGGGGAGCTGGCTTTT 60.541 55.000 0.00 0.00 0.00 2.27
3382 3410 0.777446 AGTTGGGGAGCTGGCTTTTA 59.223 50.000 0.00 0.00 0.00 1.52
3383 3411 1.177401 GTTGGGGAGCTGGCTTTTAG 58.823 55.000 0.00 0.00 0.00 1.85
3384 3412 0.611896 TTGGGGAGCTGGCTTTTAGC 60.612 55.000 0.00 0.00 41.46 3.09
3385 3413 1.000896 GGGGAGCTGGCTTTTAGCA 60.001 57.895 0.00 0.00 44.75 3.49
3386 3414 1.034292 GGGGAGCTGGCTTTTAGCAG 61.034 60.000 0.00 0.00 44.75 4.24
3387 3415 1.661498 GGGAGCTGGCTTTTAGCAGC 61.661 60.000 0.00 0.00 44.75 5.25
3389 3417 3.353342 AGCTGGCTTTTAGCAGCTT 57.647 47.368 0.00 5.30 46.07 3.74
3390 3418 1.172175 AGCTGGCTTTTAGCAGCTTC 58.828 50.000 0.00 0.00 46.07 3.86
3391 3419 0.883833 GCTGGCTTTTAGCAGCTTCA 59.116 50.000 0.00 0.00 44.75 3.02
3392 3420 1.475682 GCTGGCTTTTAGCAGCTTCAT 59.524 47.619 0.00 0.00 44.75 2.57
3393 3421 2.479219 GCTGGCTTTTAGCAGCTTCATC 60.479 50.000 0.00 0.00 44.75 2.92
3394 3422 2.751259 CTGGCTTTTAGCAGCTTCATCA 59.249 45.455 0.00 0.00 44.75 3.07
3395 3423 3.156293 TGGCTTTTAGCAGCTTCATCAA 58.844 40.909 0.00 0.00 44.75 2.57
3396 3424 3.573538 TGGCTTTTAGCAGCTTCATCAAA 59.426 39.130 0.00 0.00 44.75 2.69
3397 3425 4.221262 TGGCTTTTAGCAGCTTCATCAAAT 59.779 37.500 0.00 0.00 44.75 2.32
3398 3426 5.173664 GGCTTTTAGCAGCTTCATCAAATT 58.826 37.500 0.00 0.00 44.75 1.82
3399 3427 6.071447 TGGCTTTTAGCAGCTTCATCAAATTA 60.071 34.615 0.00 0.00 44.75 1.40
3400 3428 6.813152 GGCTTTTAGCAGCTTCATCAAATTAA 59.187 34.615 0.00 0.00 44.75 1.40
3401 3429 7.009907 GGCTTTTAGCAGCTTCATCAAATTAAG 59.990 37.037 0.00 0.00 44.75 1.85
3402 3430 7.463780 GCTTTTAGCAGCTTCATCAAATTAAGC 60.464 37.037 0.00 2.28 44.70 3.09
3412 3440 9.070149 GCTTCATCAAATTAAGCTAAAGTCTTG 57.930 33.333 3.18 0.00 41.85 3.02
3415 3443 8.730680 TCATCAAATTAAGCTAAAGTCTTGTCC 58.269 33.333 0.00 0.00 0.00 4.02
3416 3444 8.514594 CATCAAATTAAGCTAAAGTCTTGTCCA 58.485 33.333 0.00 0.00 0.00 4.02
3417 3445 7.871853 TCAAATTAAGCTAAAGTCTTGTCCAC 58.128 34.615 0.00 0.00 0.00 4.02
3418 3446 7.719633 TCAAATTAAGCTAAAGTCTTGTCCACT 59.280 33.333 0.00 0.00 0.00 4.00
3419 3447 7.674471 AATTAAGCTAAAGTCTTGTCCACTC 57.326 36.000 0.00 0.00 0.00 3.51
3420 3448 3.686916 AGCTAAAGTCTTGTCCACTCC 57.313 47.619 0.00 0.00 0.00 3.85
3421 3449 2.303311 AGCTAAAGTCTTGTCCACTCCC 59.697 50.000 0.00 0.00 0.00 4.30
3422 3450 2.931320 GCTAAAGTCTTGTCCACTCCCG 60.931 54.545 0.00 0.00 0.00 5.14
3423 3451 0.396811 AAAGTCTTGTCCACTCCCGG 59.603 55.000 0.00 0.00 0.00 5.73
3424 3452 0.471211 AAGTCTTGTCCACTCCCGGA 60.471 55.000 0.73 0.00 0.00 5.14
3425 3453 0.900647 AGTCTTGTCCACTCCCGGAG 60.901 60.000 13.31 13.31 35.10 4.63
3426 3454 1.155390 TCTTGTCCACTCCCGGAGT 59.845 57.895 14.84 14.84 44.44 3.85
3436 3464 2.674796 CTCCCGGAGTGGAGTTAAAG 57.325 55.000 0.73 0.00 45.76 1.85
3437 3465 2.176889 CTCCCGGAGTGGAGTTAAAGA 58.823 52.381 0.73 0.00 45.76 2.52
3438 3466 2.565834 CTCCCGGAGTGGAGTTAAAGAA 59.434 50.000 0.73 0.00 45.76 2.52
3439 3467 2.565834 TCCCGGAGTGGAGTTAAAGAAG 59.434 50.000 0.73 0.00 42.00 2.85
3440 3468 2.302157 CCCGGAGTGGAGTTAAAGAAGT 59.698 50.000 0.73 0.00 42.00 3.01
3441 3469 3.512724 CCCGGAGTGGAGTTAAAGAAGTA 59.487 47.826 0.73 0.00 42.00 2.24
3442 3470 4.381718 CCCGGAGTGGAGTTAAAGAAGTAG 60.382 50.000 0.73 0.00 42.00 2.57
3443 3471 4.461781 CCGGAGTGGAGTTAAAGAAGTAGA 59.538 45.833 0.00 0.00 42.00 2.59
3444 3472 5.393243 CCGGAGTGGAGTTAAAGAAGTAGAG 60.393 48.000 0.00 0.00 42.00 2.43
3445 3473 5.415077 CGGAGTGGAGTTAAAGAAGTAGAGA 59.585 44.000 0.00 0.00 0.00 3.10
3446 3474 6.403855 CGGAGTGGAGTTAAAGAAGTAGAGAG 60.404 46.154 0.00 0.00 0.00 3.20
3447 3475 6.660094 GGAGTGGAGTTAAAGAAGTAGAGAGA 59.340 42.308 0.00 0.00 0.00 3.10
3448 3476 7.177041 GGAGTGGAGTTAAAGAAGTAGAGAGAA 59.823 40.741 0.00 0.00 0.00 2.87
3449 3477 8.480133 AGTGGAGTTAAAGAAGTAGAGAGAAA 57.520 34.615 0.00 0.00 0.00 2.52
3450 3478 8.361889 AGTGGAGTTAAAGAAGTAGAGAGAAAC 58.638 37.037 0.00 0.00 0.00 2.78
3451 3479 7.599621 GTGGAGTTAAAGAAGTAGAGAGAAACC 59.400 40.741 0.00 0.00 0.00 3.27
3452 3480 6.807720 GGAGTTAAAGAAGTAGAGAGAAACCG 59.192 42.308 0.00 0.00 0.00 4.44
3453 3481 7.309073 GGAGTTAAAGAAGTAGAGAGAAACCGA 60.309 40.741 0.00 0.00 0.00 4.69
3454 3482 7.949434 AGTTAAAGAAGTAGAGAGAAACCGAA 58.051 34.615 0.00 0.00 0.00 4.30
3455 3483 7.866898 AGTTAAAGAAGTAGAGAGAAACCGAAC 59.133 37.037 0.00 0.00 0.00 3.95
3456 3484 5.786264 AAGAAGTAGAGAGAAACCGAACA 57.214 39.130 0.00 0.00 0.00 3.18
3457 3485 5.123805 AGAAGTAGAGAGAAACCGAACAC 57.876 43.478 0.00 0.00 0.00 3.32
3458 3486 4.583489 AGAAGTAGAGAGAAACCGAACACA 59.417 41.667 0.00 0.00 0.00 3.72
3459 3487 4.506886 AGTAGAGAGAAACCGAACACAG 57.493 45.455 0.00 0.00 0.00 3.66
3460 3488 2.156343 AGAGAGAAACCGAACACAGC 57.844 50.000 0.00 0.00 0.00 4.40
3461 3489 1.149148 GAGAGAAACCGAACACAGCC 58.851 55.000 0.00 0.00 0.00 4.85
3462 3490 0.759346 AGAGAAACCGAACACAGCCT 59.241 50.000 0.00 0.00 0.00 4.58
3463 3491 1.141053 AGAGAAACCGAACACAGCCTT 59.859 47.619 0.00 0.00 0.00 4.35
3464 3492 2.367567 AGAGAAACCGAACACAGCCTTA 59.632 45.455 0.00 0.00 0.00 2.69
3465 3493 3.135994 GAGAAACCGAACACAGCCTTAA 58.864 45.455 0.00 0.00 0.00 1.85
3466 3494 3.751518 AGAAACCGAACACAGCCTTAAT 58.248 40.909 0.00 0.00 0.00 1.40
3467 3495 3.751698 AGAAACCGAACACAGCCTTAATC 59.248 43.478 0.00 0.00 0.00 1.75
3486 3514 3.096489 TCAGAGCACATTTTGGTTTGC 57.904 42.857 0.00 0.00 37.65 3.68
3491 3519 2.036346 AGCACATTTTGGTTTGCTCCTC 59.964 45.455 0.00 0.00 41.53 3.71
3507 3535 3.093057 CTCCTCCTGTACTGCTGTTACT 58.907 50.000 0.09 0.00 0.00 2.24
3508 3536 3.507411 TCCTCCTGTACTGCTGTTACTT 58.493 45.455 0.09 0.00 0.00 2.24
3509 3537 3.901844 TCCTCCTGTACTGCTGTTACTTT 59.098 43.478 0.09 0.00 0.00 2.66
3546 3574 7.770366 AAAAATTGTAGTATTCCCTTCCGTT 57.230 32.000 0.00 0.00 0.00 4.44
3557 3585 8.591940 AGTATTCCCTTCCGTTATTATTACTCC 58.408 37.037 0.00 0.00 0.00 3.85
3561 3589 5.071384 CCCTTCCGTTATTATTACTCCTGGT 59.929 44.000 0.00 0.00 0.00 4.00
3562 3590 6.221659 CCTTCCGTTATTATTACTCCTGGTC 58.778 44.000 0.00 0.00 0.00 4.02
3564 3592 7.232127 CCTTCCGTTATTATTACTCCTGGTCTA 59.768 40.741 0.00 0.00 0.00 2.59
3593 4489 3.818787 GGAGCAGCCAATGTGCCG 61.819 66.667 0.00 0.00 42.24 5.69
3602 4498 1.597663 GCCAATGTGCCGTATCTACAC 59.402 52.381 0.00 0.00 34.86 2.90
3614 4510 4.574828 CCGTATCTACACCCTCCAAAATTG 59.425 45.833 0.00 0.00 0.00 2.32
3623 4519 5.221441 ACACCCTCCAAAATTGTTTTAGAGC 60.221 40.000 5.46 0.00 37.16 4.09
3632 4528 7.329226 CCAAAATTGTTTTAGAGCATCGTTCAT 59.671 33.333 0.00 0.00 42.67 2.57
3633 4529 9.340695 CAAAATTGTTTTAGAGCATCGTTCATA 57.659 29.630 0.00 0.00 42.67 2.15
3634 4530 9.906660 AAAATTGTTTTAGAGCATCGTTCATAA 57.093 25.926 0.00 0.00 42.67 1.90
3640 4536 9.159470 GTTTTAGAGCATCGTTCATAATTAAGC 57.841 33.333 0.00 0.00 42.67 3.09
3641 4537 5.931441 AGAGCATCGTTCATAATTAAGCC 57.069 39.130 0.00 0.00 42.67 4.35
3643 4539 6.759272 AGAGCATCGTTCATAATTAAGCCTA 58.241 36.000 0.00 0.00 42.67 3.93
3644 4540 7.390027 AGAGCATCGTTCATAATTAAGCCTAT 58.610 34.615 0.00 0.00 42.67 2.57
3645 4541 7.880195 AGAGCATCGTTCATAATTAAGCCTATT 59.120 33.333 0.00 0.00 42.67 1.73
3646 4542 8.396272 AGCATCGTTCATAATTAAGCCTATTT 57.604 30.769 0.00 0.00 0.00 1.40
3647 4543 8.507249 AGCATCGTTCATAATTAAGCCTATTTC 58.493 33.333 0.00 0.00 0.00 2.17
3648 4544 7.478667 GCATCGTTCATAATTAAGCCTATTTCG 59.521 37.037 0.00 0.00 0.00 3.46
3649 4545 8.708742 CATCGTTCATAATTAAGCCTATTTCGA 58.291 33.333 0.00 0.00 0.00 3.71
3651 4547 8.139350 TCGTTCATAATTAAGCCTATTTCGAGA 58.861 33.333 0.00 0.00 0.00 4.04
3652 4548 8.428536 CGTTCATAATTAAGCCTATTTCGAGAG 58.571 37.037 0.00 0.00 0.00 3.20
3654 4550 9.698309 TTCATAATTAAGCCTATTTCGAGAGAG 57.302 33.333 0.00 0.00 43.69 3.20
3655 4551 9.078990 TCATAATTAAGCCTATTTCGAGAGAGA 57.921 33.333 0.00 0.00 43.69 3.10
3656 4552 9.868277 CATAATTAAGCCTATTTCGAGAGAGAT 57.132 33.333 0.00 0.00 43.69 2.75
3659 4555 5.606348 AAGCCTATTTCGAGAGAGATTGT 57.394 39.130 0.00 0.00 43.69 2.71
3661 4557 4.038642 AGCCTATTTCGAGAGAGATTGTCC 59.961 45.833 0.00 0.00 43.69 4.02
3662 4558 4.202161 GCCTATTTCGAGAGAGATTGTCCA 60.202 45.833 0.00 0.00 43.69 4.02
3664 4560 6.294787 GCCTATTTCGAGAGAGATTGTCCATA 60.295 42.308 0.00 0.00 43.69 2.74
3666 4562 8.310382 CCTATTTCGAGAGAGATTGTCCATATT 58.690 37.037 0.00 0.00 43.69 1.28
3668 4564 8.970859 ATTTCGAGAGAGATTGTCCATATTTT 57.029 30.769 0.00 0.00 43.69 1.82
3689 4585 5.443142 TTTTTAAAGTTGTGCGCAAACTC 57.557 34.783 26.72 13.85 36.22 3.01
3690 4586 2.376915 TAAAGTTGTGCGCAAACTCG 57.623 45.000 26.72 0.00 36.22 4.18
3692 4588 0.304705 AAGTTGTGCGCAAACTCGAG 59.695 50.000 26.72 11.84 36.22 4.04
3693 4589 0.810031 AGTTGTGCGCAAACTCGAGT 60.810 50.000 23.38 13.58 36.22 4.18
3694 4590 0.383124 GTTGTGCGCAAACTCGAGTC 60.383 55.000 20.33 6.39 36.22 3.36
3695 4591 1.817217 TTGTGCGCAAACTCGAGTCG 61.817 55.000 20.33 18.90 0.00 4.18
3696 4592 2.014554 GTGCGCAAACTCGAGTCGA 61.015 57.895 24.25 15.64 0.00 4.20
3697 4593 2.014554 TGCGCAAACTCGAGTCGAC 61.015 57.895 24.25 7.70 0.00 4.20
3698 4594 2.717809 GCGCAAACTCGAGTCGACC 61.718 63.158 24.25 11.13 0.00 4.79
3699 4595 1.081376 CGCAAACTCGAGTCGACCT 60.081 57.895 20.33 0.00 0.00 3.85
3700 4596 0.167470 CGCAAACTCGAGTCGACCTA 59.833 55.000 20.33 0.00 0.00 3.08
3701 4597 1.615502 GCAAACTCGAGTCGACCTAC 58.384 55.000 20.33 3.40 0.00 3.18
3702 4598 1.731750 GCAAACTCGAGTCGACCTACC 60.732 57.143 20.33 0.00 0.00 3.18
3704 4600 3.005554 CAAACTCGAGTCGACCTACCTA 58.994 50.000 20.33 0.00 0.00 3.08
3705 4601 3.557228 AACTCGAGTCGACCTACCTAT 57.443 47.619 20.33 0.00 0.00 2.57
3706 4602 2.836262 ACTCGAGTCGACCTACCTATG 58.164 52.381 13.58 0.87 0.00 2.23
3708 4604 3.386078 ACTCGAGTCGACCTACCTATGTA 59.614 47.826 13.58 0.00 0.00 2.29
3709 4605 4.141846 ACTCGAGTCGACCTACCTATGTAA 60.142 45.833 13.58 0.00 0.00 2.41
3710 4606 4.375272 TCGAGTCGACCTACCTATGTAAG 58.625 47.826 12.09 0.00 0.00 2.34
3711 4607 4.125703 CGAGTCGACCTACCTATGTAAGT 58.874 47.826 13.01 0.00 0.00 2.24
3713 4609 5.065731 CGAGTCGACCTACCTATGTAAGTTT 59.934 44.000 13.01 0.00 0.00 2.66
3715 4611 7.518052 CGAGTCGACCTACCTATGTAAGTTTAG 60.518 44.444 13.01 0.00 0.00 1.85
3716 4612 7.115414 AGTCGACCTACCTATGTAAGTTTAGT 58.885 38.462 13.01 0.00 0.00 2.24
3717 4613 7.613411 AGTCGACCTACCTATGTAAGTTTAGTT 59.387 37.037 13.01 0.00 0.00 2.24
3718 4614 8.246871 GTCGACCTACCTATGTAAGTTTAGTTT 58.753 37.037 3.51 0.00 0.00 2.66
3719 4615 8.806146 TCGACCTACCTATGTAAGTTTAGTTTT 58.194 33.333 0.00 0.00 0.00 2.43
3768 5000 3.920412 GCCTCCAAAATTGTTTTAGAGCG 59.080 43.478 5.46 2.07 37.16 5.03
3770 5002 5.335348 GCCTCCAAAATTGTTTTAGAGCGTA 60.335 40.000 5.46 0.00 37.16 4.42
3784 5016 9.634300 GTTTTAGAGCGTAGTTCATAATTAAGC 57.366 33.333 0.00 0.00 41.37 3.09
3785 5017 7.941795 TTAGAGCGTAGTTCATAATTAAGCC 57.058 36.000 0.00 0.00 41.37 4.35
3786 5018 6.163135 AGAGCGTAGTTCATAATTAAGCCT 57.837 37.500 0.00 0.00 41.37 4.58
3787 5019 7.286215 AGAGCGTAGTTCATAATTAAGCCTA 57.714 36.000 0.00 0.00 41.37 3.93
3788 5020 7.897864 AGAGCGTAGTTCATAATTAAGCCTAT 58.102 34.615 0.00 0.00 41.37 2.57
3789 5021 8.368668 AGAGCGTAGTTCATAATTAAGCCTATT 58.631 33.333 0.00 0.00 41.37 1.73
3790 5022 8.904099 AGCGTAGTTCATAATTAAGCCTATTT 57.096 30.769 0.00 0.00 30.59 1.40
3791 5023 8.989980 AGCGTAGTTCATAATTAAGCCTATTTC 58.010 33.333 0.00 0.00 30.59 2.17
3792 5024 7.950496 GCGTAGTTCATAATTAAGCCTATTTCG 59.050 37.037 0.00 0.00 0.00 3.46
3793 5025 9.188588 CGTAGTTCATAATTAAGCCTATTTCGA 57.811 33.333 0.00 0.00 0.00 3.71
3796 5028 9.482627 AGTTCATAATTAAGCCTATTTCGAGAG 57.517 33.333 0.00 0.00 0.00 3.20
3797 5029 8.713271 GTTCATAATTAAGCCTATTTCGAGAGG 58.287 37.037 5.88 5.88 35.78 3.69
3798 5030 7.386851 TCATAATTAAGCCTATTTCGAGAGGG 58.613 38.462 10.95 3.48 33.04 4.30
3799 5031 5.888982 AATTAAGCCTATTTCGAGAGGGA 57.111 39.130 10.95 0.00 33.04 4.20
3800 5032 6.441088 AATTAAGCCTATTTCGAGAGGGAT 57.559 37.500 10.95 0.00 33.04 3.85
3801 5033 5.470047 TTAAGCCTATTTCGAGAGGGATC 57.530 43.478 10.95 0.00 33.04 3.36
3802 5034 1.889829 AGCCTATTTCGAGAGGGATCG 59.110 52.381 10.95 0.00 44.07 3.69
3803 5035 1.670380 GCCTATTTCGAGAGGGATCGC 60.670 57.143 0.54 0.54 42.43 4.58
3804 5036 1.067495 CCTATTTCGAGAGGGATCGCC 60.067 57.143 6.09 0.00 42.43 5.54
3823 5055 7.979537 GGATCGCCCATAATTCTTTTTAAAGTT 59.020 33.333 2.44 0.00 34.68 2.66
3836 5068 2.376915 TAAAGTTGTGCGCAAACTCG 57.623 45.000 26.72 0.00 36.22 4.18
3838 5070 2.051345 GTTGTGCGCAAACTCGGG 60.051 61.111 14.00 0.00 36.22 5.14
3839 5071 2.515057 TTGTGCGCAAACTCGGGT 60.515 55.556 14.00 0.00 0.00 5.28
3840 5072 2.539338 TTGTGCGCAAACTCGGGTC 61.539 57.895 14.00 0.00 0.00 4.46
3841 5073 4.072088 GTGCGCAAACTCGGGTCG 62.072 66.667 14.00 0.00 0.00 4.79
3842 5074 4.287781 TGCGCAAACTCGGGTCGA 62.288 61.111 8.16 0.00 0.00 4.20
3843 5075 3.774702 GCGCAAACTCGGGTCGAC 61.775 66.667 7.13 7.13 0.00 4.20
3854 5086 2.272146 GGTCGACCCACCATGCAT 59.728 61.111 24.75 0.00 36.32 3.96
3855 5087 2.114670 GGTCGACCCACCATGCATG 61.115 63.158 24.75 20.19 36.32 4.06
3858 5090 1.127343 TCGACCCACCATGCATGATA 58.873 50.000 28.31 0.00 0.00 2.15
3860 5092 1.808343 CGACCCACCATGCATGATATG 59.192 52.381 28.31 20.45 0.00 1.78
3880 5112 3.244670 GCATGCTTGTGCGTATTCTAG 57.755 47.619 11.37 0.00 43.34 2.43
3883 5115 4.201812 GCATGCTTGTGCGTATTCTAGAAA 60.202 41.667 11.37 0.00 43.34 2.52
3884 5116 5.673568 GCATGCTTGTGCGTATTCTAGAAAA 60.674 40.000 11.37 0.00 43.34 2.29
3885 5117 5.277601 TGCTTGTGCGTATTCTAGAAAAC 57.722 39.130 9.71 4.30 43.34 2.43
3886 5118 4.752604 TGCTTGTGCGTATTCTAGAAAACA 59.247 37.500 9.71 6.72 43.34 2.83
3887 5119 5.237561 TGCTTGTGCGTATTCTAGAAAACAA 59.762 36.000 9.71 13.09 43.34 2.83
3888 5120 6.140110 GCTTGTGCGTATTCTAGAAAACAAA 58.860 36.000 9.71 0.00 0.00 2.83
3903 5135 6.114767 AGAAAACAAATTGCACCAACTCAAT 58.885 32.000 0.00 0.00 34.66 2.57
3910 5142 5.981088 ATTGCACCAACTCAATGTTCATA 57.019 34.783 0.00 0.00 36.63 2.15
3921 5153 7.348080 ACTCAATGTTCATACTTCTATCCGA 57.652 36.000 0.00 0.00 0.00 4.55
3935 5167 5.545658 TCTATCCGAAAGCATTGAAACAC 57.454 39.130 0.00 0.00 0.00 3.32
3958 5190 7.639113 ACTAAAAGTGAATTGAGTTGAACCA 57.361 32.000 0.00 0.00 0.00 3.67
3967 5199 1.879380 TGAGTTGAACCATTTCGCCAG 59.121 47.619 0.00 0.00 34.04 4.85
3968 5200 1.880027 GAGTTGAACCATTTCGCCAGT 59.120 47.619 0.00 0.00 34.04 4.00
3973 5205 1.336755 GAACCATTTCGCCAGTGTGTT 59.663 47.619 0.00 0.00 0.00 3.32
3975 5207 0.110238 CCATTTCGCCAGTGTGTTCG 60.110 55.000 0.00 0.00 0.00 3.95
3976 5208 0.586319 CATTTCGCCAGTGTGTTCGT 59.414 50.000 0.00 0.00 0.00 3.85
3977 5209 0.865769 ATTTCGCCAGTGTGTTCGTC 59.134 50.000 0.00 0.00 0.00 4.20
3979 5211 2.981977 TTCGCCAGTGTGTTCGTCCC 62.982 60.000 0.00 0.00 0.00 4.46
3981 5213 3.148084 CCAGTGTGTTCGTCCCCT 58.852 61.111 0.00 0.00 0.00 4.79
3982 5214 1.823169 GCCAGTGTGTTCGTCCCCTA 61.823 60.000 0.00 0.00 0.00 3.53
3983 5215 0.902531 CCAGTGTGTTCGTCCCCTAT 59.097 55.000 0.00 0.00 0.00 2.57
3994 5227 0.034059 GTCCCCTATGAGCGACATGG 59.966 60.000 0.00 6.53 39.77 3.66
4033 5266 2.825836 CCAGCATTGTCGGCCTCC 60.826 66.667 0.00 0.00 0.00 4.30
4039 5272 3.943137 ATTGTCGGCCTCCCCTCCA 62.943 63.158 0.00 0.00 0.00 3.86
4048 5281 0.852842 CCTCCCCTCCATTGCCATTA 59.147 55.000 0.00 0.00 0.00 1.90
4058 5291 0.532862 ATTGCCATTAGAGGACGCCG 60.533 55.000 0.00 0.00 0.00 6.46
4096 5329 4.051167 TGATGGTGGCAGCAGGGG 62.051 66.667 24.68 0.00 0.00 4.79
4098 5331 3.590466 GATGGTGGCAGCAGGGGTT 62.590 63.158 24.68 7.53 0.00 4.11
4099 5332 3.590466 ATGGTGGCAGCAGGGGTTC 62.590 63.158 24.68 0.00 0.00 3.62
4100 5333 3.971702 GGTGGCAGCAGGGGTTCT 61.972 66.667 12.58 0.00 0.00 3.01
4102 5335 3.650950 TGGCAGCAGGGGTTCTCC 61.651 66.667 0.00 0.00 0.00 3.71
4103 5336 3.334054 GGCAGCAGGGGTTCTCCT 61.334 66.667 0.00 0.00 37.71 3.69
4104 5337 2.270527 GCAGCAGGGGTTCTCCTC 59.729 66.667 0.00 0.00 34.31 3.71
4119 5352 1.153289 CCTCCCCTCTTGCATGTCG 60.153 63.158 0.00 0.00 0.00 4.35
4123 5356 3.197790 CCTCTTGCATGTCGGCGG 61.198 66.667 7.21 0.00 36.28 6.13
4125 5358 4.776322 TCTTGCATGTCGGCGGGG 62.776 66.667 7.21 0.00 36.28 5.73
4147 5380 2.421739 CGGGGGCTCGACCTAATG 59.578 66.667 4.41 0.00 39.10 1.90
4190 5423 1.138047 GGCGTCGTTAGATGGACACG 61.138 60.000 0.00 0.00 34.04 4.49
4196 5429 1.531912 GTTAGATGGACACGACGACG 58.468 55.000 5.58 5.58 45.75 5.12
4197 5430 0.179181 TTAGATGGACACGACGACGC 60.179 55.000 7.30 0.00 43.96 5.19
4225 5458 4.947147 TTGTGGAGGTGTGGGCGC 62.947 66.667 0.00 0.00 0.00 6.53
4264 5497 1.169661 TGTCCAACGGTTGATGTGGC 61.170 55.000 21.88 7.41 0.00 5.01
4265 5498 0.889186 GTCCAACGGTTGATGTGGCT 60.889 55.000 21.88 0.00 0.00 4.75
4297 5530 2.109538 CTTAGGCATGGCATCGCACG 62.110 60.000 22.64 1.55 0.00 5.34
4304 5537 4.460683 GGCATCGCACGGGTGGTA 62.461 66.667 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.756538 CAAAGGCCGGGCATTCTTTAT 59.243 47.619 31.59 3.02 28.96 1.40
73 76 2.360844 TGCTCGTTTGGACTTGTTGAA 58.639 42.857 0.00 0.00 0.00 2.69
74 77 2.031258 TGCTCGTTTGGACTTGTTGA 57.969 45.000 0.00 0.00 0.00 3.18
145 148 5.047235 GTGTAATCCCCGTATAAGATCTGCT 60.047 44.000 0.00 0.00 0.00 4.24
153 156 1.344114 GGCGGTGTAATCCCCGTATAA 59.656 52.381 0.00 0.00 45.91 0.98
244 247 1.561643 TCCTGCAGAAGTCGAAGGAT 58.438 50.000 17.39 0.00 32.07 3.24
249 252 3.555966 TGATCTATCCTGCAGAAGTCGA 58.444 45.455 17.39 3.29 0.00 4.20
268 271 1.141019 GCGATGGCTCCGTACTTGA 59.859 57.895 0.00 0.00 35.83 3.02
369 375 0.701731 TGGGGGTGGTTGTCTTATGG 59.298 55.000 0.00 0.00 0.00 2.74
383 389 9.594478 GTTTTCTGTACATTATTTTTATGGGGG 57.406 33.333 0.00 0.00 0.00 5.40
409 415 3.364964 GGTTGCGGAGTATTGACAAACAG 60.365 47.826 0.00 0.00 0.00 3.16
415 421 3.758300 CAATTGGTTGCGGAGTATTGAC 58.242 45.455 0.00 0.00 0.00 3.18
457 467 9.670442 AGTAGTTTCAAATCTATACCCTCCATA 57.330 33.333 0.00 0.00 0.00 2.74
533 551 8.523915 TTGCCAACATGATGAGTCTATTAAAT 57.476 30.769 4.25 0.00 0.00 1.40
563 581 3.713288 GTTATACGCAGTCAGGCATGTA 58.287 45.455 0.00 0.00 43.93 2.29
586 604 3.134804 AGGGGAGATTCGTTATGAACCTG 59.865 47.826 0.00 0.00 40.00 4.00
598 616 1.228510 CCTTGGCCAGGGGAGATTC 59.771 63.158 26.18 0.00 39.39 2.52
623 641 4.398044 CGTAATGCTTGGAAGTTTGGGTAT 59.602 41.667 0.00 0.00 0.00 2.73
701 720 4.082190 TGGTACATGACTTCAGCAGAGTAC 60.082 45.833 0.00 0.00 33.54 2.73
702 721 4.086457 TGGTACATGACTTCAGCAGAGTA 58.914 43.478 0.00 0.00 0.00 2.59
703 722 2.899900 TGGTACATGACTTCAGCAGAGT 59.100 45.455 0.00 0.00 0.00 3.24
740 761 4.021016 TGTTCAGAAGAGAAGGAAGTAGCC 60.021 45.833 0.00 0.00 0.00 3.93
741 762 5.140747 TGTTCAGAAGAGAAGGAAGTAGC 57.859 43.478 0.00 0.00 0.00 3.58
744 765 5.622346 AGTTGTTCAGAAGAGAAGGAAGT 57.378 39.130 0.00 0.00 0.00 3.01
746 767 7.565680 AGTTTAGTTGTTCAGAAGAGAAGGAA 58.434 34.615 0.00 0.00 0.00 3.36
748 769 6.986817 TGAGTTTAGTTGTTCAGAAGAGAAGG 59.013 38.462 0.00 0.00 0.00 3.46
750 771 7.556844 ACTGAGTTTAGTTGTTCAGAAGAGAA 58.443 34.615 7.29 0.00 39.46 2.87
751 772 7.113658 ACTGAGTTTAGTTGTTCAGAAGAGA 57.886 36.000 7.29 0.00 39.46 3.10
752 773 8.353684 TCTACTGAGTTTAGTTGTTCAGAAGAG 58.646 37.037 7.29 2.59 39.46 2.85
753 774 8.234136 TCTACTGAGTTTAGTTGTTCAGAAGA 57.766 34.615 7.29 0.00 39.46 2.87
754 775 9.134734 GATCTACTGAGTTTAGTTGTTCAGAAG 57.865 37.037 7.29 0.00 39.46 2.85
755 776 7.808381 CGATCTACTGAGTTTAGTTGTTCAGAA 59.192 37.037 7.29 0.00 39.46 3.02
799 820 0.528470 CACGGTTGGTGTGTTTGGTT 59.472 50.000 0.00 0.00 41.89 3.67
800 821 2.185238 CACGGTTGGTGTGTTTGGT 58.815 52.632 0.00 0.00 41.89 3.67
1866 1894 1.412606 GCGTTCGAAGTCGCTGAAG 59.587 57.895 21.62 0.00 44.32 3.02
2097 2125 4.760047 GCGTGGTGGATGCCGAGT 62.760 66.667 0.00 0.00 0.00 4.18
2289 2317 1.891919 GCAGTTGTGGAAGACGGCA 60.892 57.895 0.00 0.00 37.03 5.69
2546 2574 1.452108 GGGCAGTGGTAGTGCATCC 60.452 63.158 10.44 0.00 46.06 3.51
2814 2842 1.490693 CGTAGATGATGTGCACGGCC 61.491 60.000 13.13 4.16 0.00 6.13
3168 3196 2.647297 GCAAGGCACAAGCAGACC 59.353 61.111 0.00 0.00 44.61 3.85
3333 3361 1.971695 CCAAGTTCCGAACAGGGCC 60.972 63.158 13.69 0.00 41.52 5.80
3334 3362 2.626780 GCCAAGTTCCGAACAGGGC 61.627 63.158 22.65 22.65 42.71 5.19
3336 3364 3.668386 GGCCAAGTTCCGAACAGG 58.332 61.111 13.69 14.46 42.97 4.00
3355 3383 4.148825 CTCCCCAACTCCGCGGAG 62.149 72.222 45.26 45.26 46.91 4.63
3359 3387 4.785453 CCAGCTCCCCAACTCCGC 62.785 72.222 0.00 0.00 0.00 5.54
3360 3388 4.785453 GCCAGCTCCCCAACTCCG 62.785 72.222 0.00 0.00 0.00 4.63
3361 3389 2.432174 AAAGCCAGCTCCCCAACTCC 62.432 60.000 0.00 0.00 0.00 3.85
3362 3390 0.540597 AAAAGCCAGCTCCCCAACTC 60.541 55.000 0.00 0.00 0.00 3.01
3363 3391 0.777446 TAAAAGCCAGCTCCCCAACT 59.223 50.000 0.00 0.00 0.00 3.16
3364 3392 1.177401 CTAAAAGCCAGCTCCCCAAC 58.823 55.000 0.00 0.00 0.00 3.77
3365 3393 0.611896 GCTAAAAGCCAGCTCCCCAA 60.612 55.000 0.00 0.00 34.48 4.12
3366 3394 1.000896 GCTAAAAGCCAGCTCCCCA 60.001 57.895 0.00 0.00 34.48 4.96
3367 3395 1.000896 TGCTAAAAGCCAGCTCCCC 60.001 57.895 0.00 0.00 41.51 4.81
3368 3396 1.661498 GCTGCTAAAAGCCAGCTCCC 61.661 60.000 12.85 0.00 41.51 4.30
3369 3397 0.679321 AGCTGCTAAAAGCCAGCTCC 60.679 55.000 15.45 0.00 45.59 4.70
3370 3398 1.132073 GAAGCTGCTAAAAGCCAGCTC 59.868 52.381 19.11 12.44 46.85 4.09
3372 3400 0.883833 TGAAGCTGCTAAAAGCCAGC 59.116 50.000 0.90 12.45 44.68 4.85
3373 3401 2.751259 TGATGAAGCTGCTAAAAGCCAG 59.249 45.455 0.90 0.00 44.68 4.85
3374 3402 2.794103 TGATGAAGCTGCTAAAAGCCA 58.206 42.857 0.90 0.00 44.68 4.75
3375 3403 3.855689 TTGATGAAGCTGCTAAAAGCC 57.144 42.857 0.90 0.00 44.68 4.35
3376 3404 7.463780 GCTTAATTTGATGAAGCTGCTAAAAGC 60.464 37.037 0.90 2.25 41.89 3.51
3377 3405 7.892803 GCTTAATTTGATGAAGCTGCTAAAAG 58.107 34.615 0.90 0.00 41.89 2.27
3378 3406 7.816945 GCTTAATTTGATGAAGCTGCTAAAA 57.183 32.000 0.90 0.00 41.89 1.52
3386 3414 9.070149 CAAGACTTTAGCTTAATTTGATGAAGC 57.930 33.333 0.00 2.38 44.79 3.86
3389 3417 8.730680 GGACAAGACTTTAGCTTAATTTGATGA 58.269 33.333 0.00 0.00 0.00 2.92
3390 3418 8.514594 TGGACAAGACTTTAGCTTAATTTGATG 58.485 33.333 0.00 0.00 0.00 3.07
3391 3419 8.515414 GTGGACAAGACTTTAGCTTAATTTGAT 58.485 33.333 0.00 0.00 0.00 2.57
3392 3420 7.719633 AGTGGACAAGACTTTAGCTTAATTTGA 59.280 33.333 0.00 0.00 0.00 2.69
3393 3421 7.875971 AGTGGACAAGACTTTAGCTTAATTTG 58.124 34.615 0.00 0.00 0.00 2.32
3394 3422 7.175119 GGAGTGGACAAGACTTTAGCTTAATTT 59.825 37.037 0.00 0.00 0.00 1.82
3395 3423 6.655425 GGAGTGGACAAGACTTTAGCTTAATT 59.345 38.462 0.00 0.00 0.00 1.40
3396 3424 6.174049 GGAGTGGACAAGACTTTAGCTTAAT 58.826 40.000 0.00 0.00 0.00 1.40
3397 3425 5.512576 GGGAGTGGACAAGACTTTAGCTTAA 60.513 44.000 0.00 0.00 0.00 1.85
3398 3426 4.020485 GGGAGTGGACAAGACTTTAGCTTA 60.020 45.833 0.00 0.00 0.00 3.09
3399 3427 3.244596 GGGAGTGGACAAGACTTTAGCTT 60.245 47.826 0.00 0.00 0.00 3.74
3400 3428 2.303311 GGGAGTGGACAAGACTTTAGCT 59.697 50.000 0.00 0.00 0.00 3.32
3401 3429 2.701107 GGGAGTGGACAAGACTTTAGC 58.299 52.381 0.00 0.00 0.00 3.09
3402 3430 2.353803 CCGGGAGTGGACAAGACTTTAG 60.354 54.545 0.00 0.00 0.00 1.85
3403 3431 1.621814 CCGGGAGTGGACAAGACTTTA 59.378 52.381 0.00 0.00 0.00 1.85
3404 3432 0.396811 CCGGGAGTGGACAAGACTTT 59.603 55.000 0.00 0.00 0.00 2.66
3405 3433 0.471211 TCCGGGAGTGGACAAGACTT 60.471 55.000 0.00 0.00 31.53 3.01
3406 3434 0.900647 CTCCGGGAGTGGACAAGACT 60.901 60.000 16.15 0.00 33.48 3.24
3407 3435 1.186267 ACTCCGGGAGTGGACAAGAC 61.186 60.000 28.27 0.00 41.76 3.01
3408 3436 1.155390 ACTCCGGGAGTGGACAAGA 59.845 57.895 28.27 0.00 41.76 3.02
3409 3437 3.793060 ACTCCGGGAGTGGACAAG 58.207 61.111 28.27 1.25 41.76 3.16
3418 3446 2.314071 TCTTTAACTCCACTCCGGGA 57.686 50.000 0.00 0.00 34.36 5.14
3419 3447 2.302157 ACTTCTTTAACTCCACTCCGGG 59.698 50.000 0.00 0.00 34.36 5.73
3420 3448 3.679824 ACTTCTTTAACTCCACTCCGG 57.320 47.619 0.00 0.00 0.00 5.14
3421 3449 5.415077 TCTCTACTTCTTTAACTCCACTCCG 59.585 44.000 0.00 0.00 0.00 4.63
3422 3450 6.660094 TCTCTCTACTTCTTTAACTCCACTCC 59.340 42.308 0.00 0.00 0.00 3.85
3423 3451 7.690952 TCTCTCTACTTCTTTAACTCCACTC 57.309 40.000 0.00 0.00 0.00 3.51
3424 3452 8.361889 GTTTCTCTCTACTTCTTTAACTCCACT 58.638 37.037 0.00 0.00 0.00 4.00
3425 3453 7.599621 GGTTTCTCTCTACTTCTTTAACTCCAC 59.400 40.741 0.00 0.00 0.00 4.02
3426 3454 7.523380 CGGTTTCTCTCTACTTCTTTAACTCCA 60.523 40.741 0.00 0.00 0.00 3.86
3427 3455 6.807720 CGGTTTCTCTCTACTTCTTTAACTCC 59.192 42.308 0.00 0.00 0.00 3.85
3428 3456 7.592051 TCGGTTTCTCTCTACTTCTTTAACTC 58.408 38.462 0.00 0.00 0.00 3.01
3429 3457 7.521871 TCGGTTTCTCTCTACTTCTTTAACT 57.478 36.000 0.00 0.00 0.00 2.24
3430 3458 7.650903 TGTTCGGTTTCTCTCTACTTCTTTAAC 59.349 37.037 0.00 0.00 0.00 2.01
3431 3459 7.650903 GTGTTCGGTTTCTCTCTACTTCTTTAA 59.349 37.037 0.00 0.00 0.00 1.52
3432 3460 7.144000 GTGTTCGGTTTCTCTCTACTTCTTTA 58.856 38.462 0.00 0.00 0.00 1.85
3433 3461 5.984323 GTGTTCGGTTTCTCTCTACTTCTTT 59.016 40.000 0.00 0.00 0.00 2.52
3434 3462 5.068723 TGTGTTCGGTTTCTCTCTACTTCTT 59.931 40.000 0.00 0.00 0.00 2.52
3435 3463 4.583489 TGTGTTCGGTTTCTCTCTACTTCT 59.417 41.667 0.00 0.00 0.00 2.85
3436 3464 4.868067 TGTGTTCGGTTTCTCTCTACTTC 58.132 43.478 0.00 0.00 0.00 3.01
3437 3465 4.796618 GCTGTGTTCGGTTTCTCTCTACTT 60.797 45.833 0.00 0.00 0.00 2.24
3438 3466 3.305471 GCTGTGTTCGGTTTCTCTCTACT 60.305 47.826 0.00 0.00 0.00 2.57
3439 3467 2.987821 GCTGTGTTCGGTTTCTCTCTAC 59.012 50.000 0.00 0.00 0.00 2.59
3440 3468 2.029290 GGCTGTGTTCGGTTTCTCTCTA 60.029 50.000 0.00 0.00 0.00 2.43
3441 3469 1.270358 GGCTGTGTTCGGTTTCTCTCT 60.270 52.381 0.00 0.00 0.00 3.10
3442 3470 1.149148 GGCTGTGTTCGGTTTCTCTC 58.851 55.000 0.00 0.00 0.00 3.20
3443 3471 0.759346 AGGCTGTGTTCGGTTTCTCT 59.241 50.000 0.00 0.00 0.00 3.10
3444 3472 1.594331 AAGGCTGTGTTCGGTTTCTC 58.406 50.000 0.00 0.00 0.00 2.87
3445 3473 2.922740 TAAGGCTGTGTTCGGTTTCT 57.077 45.000 0.00 0.00 0.00 2.52
3446 3474 3.500680 TGATTAAGGCTGTGTTCGGTTTC 59.499 43.478 0.00 0.00 0.00 2.78
3447 3475 3.482436 TGATTAAGGCTGTGTTCGGTTT 58.518 40.909 0.00 0.00 0.00 3.27
3448 3476 3.074412 CTGATTAAGGCTGTGTTCGGTT 58.926 45.455 0.00 0.00 0.00 4.44
3449 3477 2.301870 TCTGATTAAGGCTGTGTTCGGT 59.698 45.455 0.00 0.00 0.00 4.69
3450 3478 2.932614 CTCTGATTAAGGCTGTGTTCGG 59.067 50.000 0.00 0.00 0.00 4.30
3451 3479 2.349886 GCTCTGATTAAGGCTGTGTTCG 59.650 50.000 0.00 0.00 0.00 3.95
3452 3480 3.126000 GTGCTCTGATTAAGGCTGTGTTC 59.874 47.826 0.00 0.00 0.00 3.18
3453 3481 3.077359 GTGCTCTGATTAAGGCTGTGTT 58.923 45.455 0.00 0.00 0.00 3.32
3454 3482 2.038952 TGTGCTCTGATTAAGGCTGTGT 59.961 45.455 0.00 0.00 0.00 3.72
3455 3483 2.703416 TGTGCTCTGATTAAGGCTGTG 58.297 47.619 0.00 0.00 0.00 3.66
3456 3484 3.641434 ATGTGCTCTGATTAAGGCTGT 57.359 42.857 0.00 0.00 0.00 4.40
3457 3485 4.978083 AAATGTGCTCTGATTAAGGCTG 57.022 40.909 0.00 0.00 0.00 4.85
3458 3486 4.159135 CCAAAATGTGCTCTGATTAAGGCT 59.841 41.667 0.00 0.00 0.00 4.58
3459 3487 4.082026 ACCAAAATGTGCTCTGATTAAGGC 60.082 41.667 0.00 0.00 0.00 4.35
3460 3488 5.649782 ACCAAAATGTGCTCTGATTAAGG 57.350 39.130 0.00 0.00 0.00 2.69
3461 3489 6.128742 GCAAACCAAAATGTGCTCTGATTAAG 60.129 38.462 0.00 0.00 34.13 1.85
3462 3490 5.695816 GCAAACCAAAATGTGCTCTGATTAA 59.304 36.000 0.00 0.00 34.13 1.40
3463 3491 5.010922 AGCAAACCAAAATGTGCTCTGATTA 59.989 36.000 0.00 0.00 43.76 1.75
3464 3492 4.060205 GCAAACCAAAATGTGCTCTGATT 58.940 39.130 0.00 0.00 34.13 2.57
3465 3493 3.322828 AGCAAACCAAAATGTGCTCTGAT 59.677 39.130 0.00 0.00 43.76 2.90
3466 3494 2.694628 AGCAAACCAAAATGTGCTCTGA 59.305 40.909 0.00 0.00 43.76 3.27
3467 3495 3.102052 AGCAAACCAAAATGTGCTCTG 57.898 42.857 0.00 0.00 43.76 3.35
3486 3514 3.093057 AGTAACAGCAGTACAGGAGGAG 58.907 50.000 0.00 0.00 0.00 3.69
3488 3516 3.963428 AAGTAACAGCAGTACAGGAGG 57.037 47.619 0.00 0.00 0.00 4.30
3491 3519 6.017109 ACATCAAAAAGTAACAGCAGTACAGG 60.017 38.462 0.00 0.00 0.00 4.00
3531 3559 8.591940 GGAGTAATAATAACGGAAGGGAATACT 58.408 37.037 0.00 0.00 0.00 2.12
3532 3560 8.591940 AGGAGTAATAATAACGGAAGGGAATAC 58.408 37.037 0.00 0.00 0.00 1.89
3557 3585 4.038642 GCTCCCAGAAGTCTTATAGACCAG 59.961 50.000 3.33 0.00 46.18 4.00
3561 3589 3.639094 GCTGCTCCCAGAAGTCTTATAGA 59.361 47.826 0.00 0.00 41.77 1.98
3562 3590 3.244044 GGCTGCTCCCAGAAGTCTTATAG 60.244 52.174 0.00 0.00 41.77 1.31
3564 3592 1.488393 GGCTGCTCCCAGAAGTCTTAT 59.512 52.381 0.00 0.00 41.77 1.73
3593 4489 7.462571 AAACAATTTTGGAGGGTGTAGATAC 57.537 36.000 0.00 0.00 0.00 2.24
3614 4510 9.159470 GCTTAATTATGAACGATGCTCTAAAAC 57.841 33.333 2.66 0.00 0.00 2.43
3623 4519 8.708742 TCGAAATAGGCTTAATTATGAACGATG 58.291 33.333 0.00 0.00 0.00 3.84
3632 4528 9.698309 CAATCTCTCTCGAAATAGGCTTAATTA 57.302 33.333 0.00 0.00 0.00 1.40
3633 4529 8.207545 ACAATCTCTCTCGAAATAGGCTTAATT 58.792 33.333 0.00 0.00 0.00 1.40
3634 4530 7.731054 ACAATCTCTCTCGAAATAGGCTTAAT 58.269 34.615 0.00 0.00 0.00 1.40
3636 4532 6.239064 GGACAATCTCTCTCGAAATAGGCTTA 60.239 42.308 0.00 0.00 0.00 3.09
3637 4533 5.452636 GGACAATCTCTCTCGAAATAGGCTT 60.453 44.000 0.00 0.00 0.00 4.35
3638 4534 4.038642 GGACAATCTCTCTCGAAATAGGCT 59.961 45.833 0.00 0.00 0.00 4.58
3639 4535 4.202161 TGGACAATCTCTCTCGAAATAGGC 60.202 45.833 0.00 0.00 0.00 3.93
3640 4536 5.521906 TGGACAATCTCTCTCGAAATAGG 57.478 43.478 0.00 0.00 0.00 2.57
3641 4537 9.703892 AAATATGGACAATCTCTCTCGAAATAG 57.296 33.333 0.00 0.00 0.00 1.73
3643 4539 8.970859 AAAATATGGACAATCTCTCTCGAAAT 57.029 30.769 0.00 0.00 0.00 2.17
3644 4540 8.792830 AAAAATATGGACAATCTCTCTCGAAA 57.207 30.769 0.00 0.00 0.00 3.46
3668 4564 3.544285 CGAGTTTGCGCACAACTTTAAAA 59.456 39.130 27.04 9.66 34.87 1.52
3672 4568 0.730265 TCGAGTTTGCGCACAACTTT 59.270 45.000 27.04 14.35 34.87 2.66
3674 4570 0.810031 ACTCGAGTTTGCGCACAACT 60.810 50.000 26.83 26.83 34.87 3.16
3676 4572 1.817217 CGACTCGAGTTTGCGCACAA 61.817 55.000 21.08 5.11 0.00 3.33
3677 4573 2.300066 CGACTCGAGTTTGCGCACA 61.300 57.895 21.08 0.00 0.00 4.57
3678 4574 2.014554 TCGACTCGAGTTTGCGCAC 61.015 57.895 21.08 0.00 0.00 5.34
3679 4575 2.014554 GTCGACTCGAGTTTGCGCA 61.015 57.895 21.08 5.66 36.23 6.09
3680 4576 2.717809 GGTCGACTCGAGTTTGCGC 61.718 63.158 21.08 13.71 36.23 6.09
3681 4577 0.167470 TAGGTCGACTCGAGTTTGCG 59.833 55.000 21.08 18.45 36.23 4.85
3682 4578 1.615502 GTAGGTCGACTCGAGTTTGC 58.384 55.000 21.08 12.05 36.23 3.68
3683 4579 1.811359 AGGTAGGTCGACTCGAGTTTG 59.189 52.381 21.08 15.47 36.23 2.93
3685 4581 3.204526 CATAGGTAGGTCGACTCGAGTT 58.795 50.000 21.08 5.66 36.23 3.01
3686 4582 2.170187 ACATAGGTAGGTCGACTCGAGT 59.830 50.000 20.18 20.18 36.23 4.18
3687 4583 2.836262 ACATAGGTAGGTCGACTCGAG 58.164 52.381 16.46 11.84 36.23 4.04
3689 4585 4.125703 ACTTACATAGGTAGGTCGACTCG 58.874 47.826 16.46 0.00 35.09 4.18
3690 4586 6.448207 AAACTTACATAGGTAGGTCGACTC 57.552 41.667 16.46 5.70 38.70 3.36
3692 4588 7.326968 ACTAAACTTACATAGGTAGGTCGAC 57.673 40.000 7.13 7.13 38.70 4.20
3693 4589 7.944729 AACTAAACTTACATAGGTAGGTCGA 57.055 36.000 2.61 0.00 38.70 4.20
3694 4590 8.992835 AAAACTAAACTTACATAGGTAGGTCG 57.007 34.615 2.61 0.00 38.70 4.79
3719 4615 9.393249 CGTATGTGCAAATTAAAGAAGAAGAAA 57.607 29.630 0.00 0.00 0.00 2.52
3723 4619 6.090129 GCCGTATGTGCAAATTAAAGAAGAA 58.910 36.000 0.00 0.00 0.00 2.52
3724 4620 5.392595 GGCCGTATGTGCAAATTAAAGAAGA 60.393 40.000 0.00 0.00 0.00 2.87
3725 4621 4.798387 GGCCGTATGTGCAAATTAAAGAAG 59.202 41.667 0.00 0.00 0.00 2.85
3726 4622 4.461081 AGGCCGTATGTGCAAATTAAAGAA 59.539 37.500 0.00 0.00 0.00 2.52
3727 4623 4.013728 AGGCCGTATGTGCAAATTAAAGA 58.986 39.130 0.00 0.00 0.00 2.52
3730 4626 2.685897 GGAGGCCGTATGTGCAAATTAA 59.314 45.455 0.00 0.00 0.00 1.40
3731 4627 2.294074 GGAGGCCGTATGTGCAAATTA 58.706 47.619 0.00 0.00 0.00 1.40
3732 4628 1.102978 GGAGGCCGTATGTGCAAATT 58.897 50.000 0.00 0.00 0.00 1.82
3734 4630 0.250945 TTGGAGGCCGTATGTGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
3737 4633 1.102978 ATTTTGGAGGCCGTATGTGC 58.897 50.000 0.00 0.00 0.00 4.57
3740 4636 3.866883 AACAATTTTGGAGGCCGTATG 57.133 42.857 0.00 0.00 0.00 2.39
3770 5002 9.482627 CTCTCGAAATAGGCTTAATTATGAACT 57.517 33.333 0.00 2.82 0.00 3.01
3778 5010 5.336849 CGATCCCTCTCGAAATAGGCTTAAT 60.337 44.000 0.00 0.00 41.12 1.40
3781 5013 2.297597 CGATCCCTCTCGAAATAGGCTT 59.702 50.000 0.00 0.00 41.12 4.35
3782 5014 1.889829 CGATCCCTCTCGAAATAGGCT 59.110 52.381 0.00 0.00 41.12 4.58
3783 5015 1.670380 GCGATCCCTCTCGAAATAGGC 60.670 57.143 3.17 0.00 41.12 3.93
3784 5016 1.067495 GGCGATCCCTCTCGAAATAGG 60.067 57.143 0.00 1.91 41.12 2.57
3785 5017 2.355717 GGCGATCCCTCTCGAAATAG 57.644 55.000 0.00 0.00 41.12 1.73
3795 5027 7.201911 CTTTAAAAAGAATTATGGGCGATCCCT 60.202 37.037 1.69 0.00 44.68 4.20
3796 5028 6.923508 CTTTAAAAAGAATTATGGGCGATCCC 59.076 38.462 0.00 0.00 44.66 3.85
3797 5029 7.489160 ACTTTAAAAAGAATTATGGGCGATCC 58.511 34.615 9.37 0.00 39.31 3.36
3798 5030 8.807581 CAACTTTAAAAAGAATTATGGGCGATC 58.192 33.333 9.37 0.00 39.31 3.69
3799 5031 8.311109 ACAACTTTAAAAAGAATTATGGGCGAT 58.689 29.630 9.37 0.00 39.31 4.58
3800 5032 7.596995 CACAACTTTAAAAAGAATTATGGGCGA 59.403 33.333 9.37 0.00 39.31 5.54
3801 5033 7.621219 GCACAACTTTAAAAAGAATTATGGGCG 60.621 37.037 9.37 0.00 39.31 6.13
3802 5034 7.518161 GCACAACTTTAAAAAGAATTATGGGC 58.482 34.615 9.37 8.33 39.31 5.36
3803 5035 7.621219 GCGCACAACTTTAAAAAGAATTATGGG 60.621 37.037 0.30 3.82 39.31 4.00
3804 5036 7.095857 TGCGCACAACTTTAAAAAGAATTATGG 60.096 33.333 5.66 0.00 39.31 2.74
3805 5037 7.782242 TGCGCACAACTTTAAAAAGAATTATG 58.218 30.769 5.66 0.00 39.31 1.90
3806 5038 7.938563 TGCGCACAACTTTAAAAAGAATTAT 57.061 28.000 5.66 0.00 39.31 1.28
3807 5039 7.757097 TTGCGCACAACTTTAAAAAGAATTA 57.243 28.000 11.12 0.00 39.31 1.40
3808 5040 6.654793 TTGCGCACAACTTTAAAAAGAATT 57.345 29.167 11.12 0.00 39.31 2.17
3809 5041 6.312672 AGTTTGCGCACAACTTTAAAAAGAAT 59.687 30.769 23.38 6.11 39.31 2.40
3810 5042 5.635700 AGTTTGCGCACAACTTTAAAAAGAA 59.364 32.000 23.38 5.02 39.31 2.52
3811 5043 5.164954 AGTTTGCGCACAACTTTAAAAAGA 58.835 33.333 23.38 0.00 39.31 2.52
3812 5044 5.448926 AGTTTGCGCACAACTTTAAAAAG 57.551 34.783 23.38 0.90 41.73 2.27
3819 5051 1.355210 CCGAGTTTGCGCACAACTT 59.645 52.632 27.04 16.86 34.87 2.66
3823 5055 2.970324 GACCCGAGTTTGCGCACA 60.970 61.111 11.12 0.00 0.00 4.57
3838 5070 0.464373 ATCATGCATGGTGGGTCGAC 60.464 55.000 25.97 7.13 0.00 4.20
3839 5071 1.127343 TATCATGCATGGTGGGTCGA 58.873 50.000 25.97 4.85 0.00 4.20
3840 5072 1.808343 CATATCATGCATGGTGGGTCG 59.192 52.381 25.97 4.39 0.00 4.79
3853 5085 1.951602 ACGCACAAGCATGCATATCAT 59.048 42.857 21.98 0.00 46.47 2.45
3854 5086 1.381522 ACGCACAAGCATGCATATCA 58.618 45.000 21.98 0.00 46.47 2.15
3855 5087 3.818961 ATACGCACAAGCATGCATATC 57.181 42.857 21.98 3.73 46.47 1.63
3858 5090 2.019249 AGAATACGCACAAGCATGCAT 58.981 42.857 21.98 4.57 46.47 3.96
3860 5092 2.866156 TCTAGAATACGCACAAGCATGC 59.134 45.455 10.51 10.51 42.27 4.06
3861 5093 5.469373 TTTCTAGAATACGCACAAGCATG 57.531 39.130 5.89 0.00 42.27 4.06
3862 5094 5.411361 TGTTTTCTAGAATACGCACAAGCAT 59.589 36.000 17.68 0.00 42.27 3.79
3864 5096 5.277601 TGTTTTCTAGAATACGCACAAGC 57.722 39.130 17.68 0.29 37.42 4.01
3865 5097 8.629986 CAATTTGTTTTCTAGAATACGCACAAG 58.370 33.333 17.68 5.97 0.00 3.16
3866 5098 7.114247 GCAATTTGTTTTCTAGAATACGCACAA 59.886 33.333 17.68 13.05 0.00 3.33
3868 5100 6.580791 TGCAATTTGTTTTCTAGAATACGCAC 59.419 34.615 17.68 6.86 0.00 5.34
3870 5102 6.033513 GGTGCAATTTGTTTTCTAGAATACGC 59.966 38.462 17.68 14.92 0.00 4.42
3871 5103 7.081349 TGGTGCAATTTGTTTTCTAGAATACG 58.919 34.615 17.68 7.31 0.00 3.06
3872 5104 8.699749 GTTGGTGCAATTTGTTTTCTAGAATAC 58.300 33.333 16.51 16.51 0.00 1.89
3874 5106 7.500141 AGTTGGTGCAATTTGTTTTCTAGAAT 58.500 30.769 5.89 0.00 0.00 2.40
3879 5111 5.083533 TGAGTTGGTGCAATTTGTTTTCT 57.916 34.783 0.00 0.00 0.00 2.52
3880 5112 5.793026 TTGAGTTGGTGCAATTTGTTTTC 57.207 34.783 0.00 0.00 0.00 2.29
3883 5115 4.768583 ACATTGAGTTGGTGCAATTTGTT 58.231 34.783 0.00 0.00 32.74 2.83
3884 5116 4.405116 ACATTGAGTTGGTGCAATTTGT 57.595 36.364 0.00 0.00 32.74 2.83
3885 5117 4.809958 TGAACATTGAGTTGGTGCAATTTG 59.190 37.500 0.00 0.00 41.51 2.32
3886 5118 5.021033 TGAACATTGAGTTGGTGCAATTT 57.979 34.783 0.00 0.00 41.51 1.82
3887 5119 4.669206 TGAACATTGAGTTGGTGCAATT 57.331 36.364 0.00 0.00 41.51 2.32
3888 5120 4.877378 ATGAACATTGAGTTGGTGCAAT 57.123 36.364 0.00 0.00 41.51 3.56
3903 5135 5.972935 TGCTTTCGGATAGAAGTATGAACA 58.027 37.500 0.00 0.00 40.40 3.18
3910 5142 5.705441 TGTTTCAATGCTTTCGGATAGAAGT 59.295 36.000 0.00 0.00 40.40 3.01
3921 5153 8.947055 ATTCACTTTTAGTGTTTCAATGCTTT 57.053 26.923 6.71 0.00 46.03 3.51
3935 5167 9.533253 AAATGGTTCAACTCAATTCACTTTTAG 57.467 29.630 0.00 0.00 0.00 1.85
3951 5183 1.336440 CACACTGGCGAAATGGTTCAA 59.664 47.619 0.00 0.00 32.89 2.69
3958 5190 0.865769 GACGAACACACTGGCGAAAT 59.134 50.000 0.00 0.00 0.00 2.17
3967 5199 1.739371 GCTCATAGGGGACGAACACAC 60.739 57.143 0.00 0.00 0.00 3.82
3968 5200 0.535335 GCTCATAGGGGACGAACACA 59.465 55.000 0.00 0.00 0.00 3.72
3973 5205 3.837578 GTCGCTCATAGGGGACGA 58.162 61.111 0.00 0.00 38.87 4.20
3975 5207 0.034059 CCATGTCGCTCATAGGGGAC 59.966 60.000 0.00 0.00 45.42 4.46
3976 5208 1.121407 CCCATGTCGCTCATAGGGGA 61.121 60.000 8.90 0.00 40.31 4.81
3977 5209 1.372683 CCCATGTCGCTCATAGGGG 59.627 63.158 14.00 9.14 39.24 4.79
3979 5211 0.602106 CTGCCCATGTCGCTCATAGG 60.602 60.000 3.92 1.94 38.15 2.57
3981 5213 0.390492 CTCTGCCCATGTCGCTCATA 59.610 55.000 3.92 0.00 34.67 2.15
3982 5214 1.145598 CTCTGCCCATGTCGCTCAT 59.854 57.895 3.92 0.00 37.22 2.90
3983 5215 2.580815 CTCTGCCCATGTCGCTCA 59.419 61.111 3.92 0.00 0.00 4.26
4014 5247 2.360350 AGGCCGACAATGCTGGTG 60.360 61.111 0.00 0.00 0.00 4.17
4015 5248 2.045926 GAGGCCGACAATGCTGGT 60.046 61.111 0.00 0.00 0.00 4.00
4016 5249 2.825836 GGAGGCCGACAATGCTGG 60.826 66.667 0.00 0.00 0.00 4.85
4017 5250 2.825836 GGGAGGCCGACAATGCTG 60.826 66.667 0.00 0.00 0.00 4.41
4019 5252 4.115199 AGGGGAGGCCGACAATGC 62.115 66.667 0.00 0.00 0.00 3.56
4021 5254 3.090532 GGAGGGGAGGCCGACAAT 61.091 66.667 0.00 0.00 0.00 2.71
4023 5256 3.943137 AATGGAGGGGAGGCCGACA 62.943 63.158 0.00 0.00 0.00 4.35
4025 5258 3.089874 CAATGGAGGGGAGGCCGA 61.090 66.667 0.00 0.00 0.00 5.54
4027 5260 4.529731 GGCAATGGAGGGGAGGCC 62.530 72.222 0.00 0.00 0.00 5.19
4033 5266 1.776667 TCCTCTAATGGCAATGGAGGG 59.223 52.381 28.28 14.16 42.54 4.30
4039 5272 0.532862 CGGCGTCCTCTAATGGCAAT 60.533 55.000 0.00 0.00 0.00 3.56
4080 5313 3.590466 AACCCCTGCTGCCACCATC 62.590 63.158 0.00 0.00 0.00 3.51
4085 5318 3.650950 GGAGAACCCCTGCTGCCA 61.651 66.667 0.00 0.00 0.00 4.92
4096 5329 0.915364 ATGCAAGAGGGGAGGAGAAC 59.085 55.000 0.00 0.00 0.00 3.01
4098 5331 0.252881 ACATGCAAGAGGGGAGGAGA 60.253 55.000 0.00 0.00 0.00 3.71
4099 5332 0.179936 GACATGCAAGAGGGGAGGAG 59.820 60.000 0.00 0.00 0.00 3.69
4100 5333 1.617018 CGACATGCAAGAGGGGAGGA 61.617 60.000 0.00 0.00 0.00 3.71
4102 5335 1.153289 CCGACATGCAAGAGGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
4103 5336 2.989639 CCGACATGCAAGAGGGGA 59.010 61.111 0.00 0.00 0.00 4.81
4104 5337 2.825836 GCCGACATGCAAGAGGGG 60.826 66.667 0.00 0.00 0.00 4.79
4128 5361 2.432300 ATTAGGTCGAGCCCCCGTG 61.432 63.158 11.73 0.00 38.26 4.94
4129 5362 2.042230 ATTAGGTCGAGCCCCCGT 60.042 61.111 11.73 0.00 38.26 5.28
4131 5364 0.680061 CTACATTAGGTCGAGCCCCC 59.320 60.000 11.73 0.00 38.26 5.40
4132 5365 1.340568 GTCTACATTAGGTCGAGCCCC 59.659 57.143 11.73 0.00 38.26 5.80
4136 5369 4.713824 TTGTGGTCTACATTAGGTCGAG 57.286 45.455 0.00 0.00 39.48 4.04
4167 5400 2.514013 CCATCTAACGACGCCACGC 61.514 63.158 0.00 0.00 36.70 5.34
4175 5408 1.129251 GTCGTCGTGTCCATCTAACGA 59.871 52.381 0.00 0.00 43.50 3.85
4178 5411 0.179181 GCGTCGTCGTGTCCATCTAA 60.179 55.000 3.66 0.00 39.49 2.10
4180 5413 2.178521 GCGTCGTCGTGTCCATCT 59.821 61.111 3.66 0.00 39.49 2.90
4206 5439 2.978010 GCCCACACCTCCACAACG 60.978 66.667 0.00 0.00 0.00 4.10
4208 5441 4.947147 GCGCCCACACCTCCACAA 62.947 66.667 0.00 0.00 0.00 3.33
4234 5467 1.300697 GTTGGACAAGACTCCGCGT 60.301 57.895 4.92 0.00 32.22 6.01
4264 5497 1.448540 CTAAGAGCCGCCACCACAG 60.449 63.158 0.00 0.00 0.00 3.66
4265 5498 2.662596 CTAAGAGCCGCCACCACA 59.337 61.111 0.00 0.00 0.00 4.17
4276 5509 0.533531 TGCGATGCCATGCCTAAGAG 60.534 55.000 0.00 0.00 0.00 2.85
4280 5513 2.588596 CGTGCGATGCCATGCCTA 60.589 61.111 0.00 0.00 0.00 3.93
4297 5530 0.252197 GTCATCCACCACTACCACCC 59.748 60.000 0.00 0.00 0.00 4.61
4302 5535 1.153429 GGGCGTCATCCACCACTAC 60.153 63.158 0.00 0.00 0.00 2.73
4304 5537 4.082523 CGGGCGTCATCCACCACT 62.083 66.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.