Multiple sequence alignment - TraesCS6A01G245100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G245100 chr6A 100.000 4601 0 0 1 4601 456753590 456748990 0.000000e+00 8497
1 TraesCS6A01G245100 chr6A 97.260 73 2 0 4529 4601 495205232 495205160 1.740000e-24 124
2 TraesCS6A01G245100 chr6D 89.149 1410 67 32 284 1675 318955850 318954509 0.000000e+00 1677
3 TraesCS6A01G245100 chr6D 91.317 1071 68 11 1728 2780 318954384 318953321 0.000000e+00 1439
4 TraesCS6A01G245100 chr6D 82.310 961 98 40 3410 4309 318952622 318951673 0.000000e+00 767
5 TraesCS6A01G245100 chr6D 88.218 348 32 4 1069 1407 464984498 464984845 1.540000e-109 407
6 TraesCS6A01G245100 chr6D 96.653 239 8 0 2898 3136 318953151 318952913 9.280000e-107 398
7 TraesCS6A01G245100 chr6D 93.750 80 5 0 4522 4601 457152602 457152523 2.250000e-23 121
8 TraesCS6A01G245100 chr6B 89.788 1038 57 18 2824 3834 504586100 504587115 0.000000e+00 1284
9 TraesCS6A01G245100 chr6B 89.749 1034 42 30 658 1675 504583728 504584713 0.000000e+00 1264
10 TraesCS6A01G245100 chr6B 92.148 675 43 6 2073 2737 504585393 504586067 0.000000e+00 944
11 TraesCS6A01G245100 chr6B 82.309 537 32 29 3837 4328 504587211 504587729 1.540000e-109 407
12 TraesCS6A01G245100 chr6B 88.406 345 31 6 1070 1411 673685078 673685416 1.540000e-109 407
13 TraesCS6A01G245100 chr6B 81.233 373 24 25 1729 2082 504584864 504585209 4.570000e-65 259
14 TraesCS6A01G245100 chr6B 95.973 149 6 0 4381 4529 504587862 504588010 4.600000e-60 243
15 TraesCS6A01G245100 chr6B 91.558 154 13 0 2937 3090 673685913 673686066 3.610000e-51 213
16 TraesCS6A01G245100 chr2B 90.351 342 24 6 1073 1411 611284734 611284399 1.520000e-119 440
17 TraesCS6A01G245100 chr2B 88.696 345 30 6 1070 1411 787078997 787079335 3.310000e-111 412
18 TraesCS6A01G245100 chr2B 90.260 154 15 0 2937 3090 611283881 611283728 7.810000e-48 202
19 TraesCS6A01G245100 chr2D 90.058 342 25 7 1073 1411 519134779 519134444 7.070000e-118 435
20 TraesCS6A01G245100 chr2D 90.260 154 15 0 2937 3090 519133972 519133819 7.810000e-48 202
21 TraesCS6A01G245100 chr2D 95.946 74 3 0 4528 4601 545763274 545763201 2.250000e-23 121
22 TraesCS6A01G245100 chr2D 95.946 74 3 0 4528 4601 560601162 560601089 2.250000e-23 121
23 TraesCS6A01G245100 chr2A 90.058 342 25 6 1073 1411 663330129 663329794 7.070000e-118 435
24 TraesCS6A01G245100 chr2A 95.946 74 3 0 4528 4601 619000686 619000759 2.250000e-23 121
25 TraesCS6A01G245100 chrUn 93.007 286 18 2 2 286 375847778 375847494 2.560000e-112 416
26 TraesCS6A01G245100 chrUn 92.933 283 18 2 2 283 328349243 328349524 1.190000e-110 411
27 TraesCS6A01G245100 chr3A 92.734 289 20 1 1 288 737680315 737680603 2.560000e-112 416
28 TraesCS6A01G245100 chr3A 92.606 284 19 2 1 283 16703026 16702744 1.540000e-109 407
29 TraesCS6A01G245100 chr3A 89.032 155 15 2 2937 3090 354906253 354906406 1.690000e-44 191
30 TraesCS6A01G245100 chr1A 92.982 285 17 3 1 283 41374004 41374287 3.310000e-111 412
31 TraesCS6A01G245100 chr1A 91.186 295 24 2 1 294 542819915 542819622 2.580000e-107 399
32 TraesCS6A01G245100 chr1A 97.297 74 2 0 4527 4600 117763558 117763485 4.830000e-25 126
33 TraesCS6A01G245100 chr7A 92.958 284 16 4 2 283 723365940 723366221 1.190000e-110 411
34 TraesCS6A01G245100 chr7A 92.606 284 20 1 1 283 95815946 95815663 1.540000e-109 407
35 TraesCS6A01G245100 chr7A 92.014 288 22 1 1 287 543359120 543359407 1.990000e-108 403
36 TraesCS6A01G245100 chr7A 97.260 73 2 0 4528 4600 9373505 9373433 1.740000e-24 124
37 TraesCS6A01G245100 chr7B 86.957 345 36 6 1070 1411 526925727 526926065 3.360000e-101 379
38 TraesCS6A01G245100 chr7B 87.662 154 19 0 2937 3090 668461373 668461220 3.660000e-41 180
39 TraesCS6A01G245100 chr1B 88.070 285 29 4 1070 1353 83627508 83627788 2.650000e-87 333
40 TraesCS6A01G245100 chr5B 90.260 154 15 0 2937 3090 32132609 32132762 7.810000e-48 202
41 TraesCS6A01G245100 chr7D 89.610 154 16 0 2937 3090 628446594 628446747 3.630000e-46 196
42 TraesCS6A01G245100 chr5D 94.805 77 4 0 4525 4601 373943235 373943311 2.250000e-23 121
43 TraesCS6A01G245100 chr5D 95.946 74 3 0 4528 4601 553956454 553956381 2.250000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G245100 chr6A 456748990 456753590 4600 True 8497.00 8497 100.000000 1 4601 1 chr6A.!!$R1 4600
1 TraesCS6A01G245100 chr6D 318951673 318955850 4177 True 1070.25 1677 89.857250 284 4309 4 chr6D.!!$R2 4025
2 TraesCS6A01G245100 chr6B 504583728 504588010 4282 False 733.50 1284 88.533333 658 4529 6 chr6B.!!$F1 3871
3 TraesCS6A01G245100 chr6B 673685078 673686066 988 False 310.00 407 89.982000 1070 3090 2 chr6B.!!$F2 2020
4 TraesCS6A01G245100 chr2B 611283728 611284734 1006 True 321.00 440 90.305500 1073 3090 2 chr2B.!!$R1 2017
5 TraesCS6A01G245100 chr2D 519133819 519134779 960 True 318.50 435 90.159000 1073 3090 2 chr2D.!!$R3 2017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 975 0.035458 CCCCGCTCCTGCCTTTATAG 59.965 60.0 0.00 0.0 35.36 1.31 F
1422 1455 0.040351 TCTCAGGTCTCCCTCCACAG 59.960 60.0 0.00 0.0 39.89 3.66 F
2160 2509 0.036164 TCTGCTACGGCCAACACATT 59.964 50.0 2.24 0.0 37.74 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2433 0.033504 TTGGTCACTCGTCTCCAAGC 59.966 55.0 0.0 0.0 35.42 4.01 R
2632 3000 0.332293 TGGCATTCCTCTTGGCATCA 59.668 50.0 0.0 0.0 43.77 3.07 R
4032 4769 0.536460 TTCTCCAACCCGCAAACCTC 60.536 55.0 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.894879 CATTGATTCGCCGCGGGA 60.895 61.111 29.38 19.62 0.00 5.14
18 19 2.124901 ATTGATTCGCCGCGGGAA 60.125 55.556 29.38 26.61 38.75 3.97
19 20 1.747367 ATTGATTCGCCGCGGGAAA 60.747 52.632 29.38 13.60 37.97 3.13
20 21 1.988834 ATTGATTCGCCGCGGGAAAC 61.989 55.000 29.38 24.36 37.97 2.78
31 32 4.857251 GGGAAACGAGGCGATGAT 57.143 55.556 0.00 0.00 0.00 2.45
32 33 2.311294 GGGAAACGAGGCGATGATG 58.689 57.895 0.00 0.00 0.00 3.07
33 34 0.179084 GGGAAACGAGGCGATGATGA 60.179 55.000 0.00 0.00 0.00 2.92
34 35 0.931005 GGAAACGAGGCGATGATGAC 59.069 55.000 0.00 0.00 0.00 3.06
35 36 0.572590 GAAACGAGGCGATGATGACG 59.427 55.000 0.00 0.00 0.00 4.35
36 37 0.172578 AAACGAGGCGATGATGACGA 59.827 50.000 0.00 0.00 0.00 4.20
37 38 0.525668 AACGAGGCGATGATGACGAC 60.526 55.000 0.00 0.00 39.24 4.34
38 39 2.006062 CGAGGCGATGATGACGACG 61.006 63.158 0.00 0.00 44.04 5.12
39 40 1.355563 GAGGCGATGATGACGACGA 59.644 57.895 0.00 0.00 44.04 4.20
40 41 0.248498 GAGGCGATGATGACGACGAA 60.248 55.000 0.00 0.00 44.04 3.85
41 42 0.248661 AGGCGATGATGACGACGAAG 60.249 55.000 0.00 0.00 44.04 3.79
42 43 1.209275 GGCGATGATGACGACGAAGG 61.209 60.000 0.00 0.00 0.00 3.46
43 44 1.209275 GCGATGATGACGACGAAGGG 61.209 60.000 0.00 0.00 0.00 3.95
44 45 0.595053 CGATGATGACGACGAAGGGG 60.595 60.000 0.00 0.00 0.00 4.79
45 46 0.876342 GATGATGACGACGAAGGGGC 60.876 60.000 0.00 0.00 0.00 5.80
46 47 2.582498 GATGACGACGAAGGGGCG 60.582 66.667 0.00 0.00 37.29 6.13
47 48 3.060020 GATGACGACGAAGGGGCGA 62.060 63.158 0.00 0.00 34.83 5.54
48 49 2.938539 GATGACGACGAAGGGGCGAG 62.939 65.000 0.00 0.00 34.83 5.03
49 50 3.437795 GACGACGAAGGGGCGAGA 61.438 66.667 0.00 0.00 34.83 4.04
50 51 2.986306 GACGACGAAGGGGCGAGAA 61.986 63.158 0.00 0.00 34.83 2.87
51 52 2.202623 CGACGAAGGGGCGAGAAG 60.203 66.667 0.00 0.00 34.83 2.85
52 53 2.697761 CGACGAAGGGGCGAGAAGA 61.698 63.158 0.00 0.00 34.83 2.87
53 54 1.139947 GACGAAGGGGCGAGAAGAG 59.860 63.158 0.00 0.00 34.83 2.85
54 55 2.286127 GACGAAGGGGCGAGAAGAGG 62.286 65.000 0.00 0.00 34.83 3.69
55 56 2.904131 GAAGGGGCGAGAAGAGGG 59.096 66.667 0.00 0.00 0.00 4.30
56 57 1.990614 GAAGGGGCGAGAAGAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
57 58 0.686769 GAAGGGGCGAGAAGAGGGTA 60.687 60.000 0.00 0.00 0.00 3.69
58 59 0.688087 AAGGGGCGAGAAGAGGGTAG 60.688 60.000 0.00 0.00 0.00 3.18
59 60 1.076192 GGGGCGAGAAGAGGGTAGA 60.076 63.158 0.00 0.00 0.00 2.59
60 61 1.110518 GGGGCGAGAAGAGGGTAGAG 61.111 65.000 0.00 0.00 0.00 2.43
61 62 0.396001 GGGCGAGAAGAGGGTAGAGT 60.396 60.000 0.00 0.00 0.00 3.24
62 63 1.026584 GGCGAGAAGAGGGTAGAGTC 58.973 60.000 0.00 0.00 0.00 3.36
63 64 0.658897 GCGAGAAGAGGGTAGAGTCG 59.341 60.000 0.00 0.00 0.00 4.18
64 65 0.658897 CGAGAAGAGGGTAGAGTCGC 59.341 60.000 0.00 0.00 0.00 5.19
65 66 1.744456 CGAGAAGAGGGTAGAGTCGCT 60.744 57.143 0.00 0.00 0.00 4.93
66 67 1.673920 GAGAAGAGGGTAGAGTCGCTG 59.326 57.143 0.00 0.00 0.00 5.18
67 68 1.282447 AGAAGAGGGTAGAGTCGCTGA 59.718 52.381 0.00 0.00 0.00 4.26
68 69 1.402613 GAAGAGGGTAGAGTCGCTGAC 59.597 57.143 1.15 1.15 0.00 3.51
69 70 0.745128 AGAGGGTAGAGTCGCTGACG 60.745 60.000 3.62 0.00 37.67 4.35
70 71 2.102553 GGGTAGAGTCGCTGACGC 59.897 66.667 4.75 4.75 37.67 5.19
99 100 4.748409 GGCTCTTTGCGCCAAAAA 57.252 50.000 4.18 0.00 46.77 1.94
100 101 2.225348 GGCTCTTTGCGCCAAAAAC 58.775 52.632 4.18 0.00 46.77 2.43
101 102 1.548132 GGCTCTTTGCGCCAAAAACG 61.548 55.000 4.18 0.00 46.77 3.60
102 103 0.593773 GCTCTTTGCGCCAAAAACGA 60.594 50.000 4.18 0.00 32.75 3.85
103 104 1.930371 GCTCTTTGCGCCAAAAACGAT 60.930 47.619 4.18 0.00 32.75 3.73
104 105 2.393764 CTCTTTGCGCCAAAAACGATT 58.606 42.857 4.18 0.00 32.75 3.34
105 106 2.389998 TCTTTGCGCCAAAAACGATTC 58.610 42.857 4.18 0.00 32.75 2.52
106 107 1.122323 CTTTGCGCCAAAAACGATTCG 59.878 47.619 4.18 4.14 32.75 3.34
107 108 1.272114 TTGCGCCAAAAACGATTCGC 61.272 50.000 4.18 2.88 42.47 4.70
108 109 2.433334 GCGCCAAAAACGATTCGCC 61.433 57.895 5.86 0.00 37.02 5.54
109 110 1.799916 CGCCAAAAACGATTCGCCC 60.800 57.895 5.86 0.00 0.00 6.13
110 111 1.799916 GCCAAAAACGATTCGCCCG 60.800 57.895 5.86 0.00 0.00 6.13
111 112 1.154112 CCAAAAACGATTCGCCCGG 60.154 57.895 5.86 0.00 0.00 5.73
112 113 1.799916 CAAAAACGATTCGCCCGGC 60.800 57.895 5.86 0.00 0.00 6.13
152 153 4.280019 GCCAGGTTCGGGTTGGGT 62.280 66.667 0.00 0.00 32.53 4.51
153 154 2.033602 CCAGGTTCGGGTTGGGTC 59.966 66.667 0.00 0.00 0.00 4.46
154 155 2.033602 CAGGTTCGGGTTGGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
171 172 4.834892 CGCCGGCGCCAATTTCAG 62.835 66.667 38.48 5.99 0.00 3.02
173 174 4.496927 CCGGCGCCAATTTCAGCC 62.497 66.667 28.98 5.08 45.67 4.85
174 175 4.496927 CGGCGCCAATTTCAGCCC 62.497 66.667 28.98 0.00 46.36 5.19
175 176 4.496927 GGCGCCAATTTCAGCCCG 62.497 66.667 24.80 0.00 43.54 6.13
176 177 3.439540 GCGCCAATTTCAGCCCGA 61.440 61.111 0.00 0.00 0.00 5.14
177 178 2.793946 CGCCAATTTCAGCCCGAG 59.206 61.111 0.00 0.00 0.00 4.63
178 179 2.491621 GCCAATTTCAGCCCGAGC 59.508 61.111 0.00 0.00 40.32 5.03
179 180 3.068729 GCCAATTTCAGCCCGAGCC 62.069 63.158 0.00 0.00 41.25 4.70
180 181 2.764314 CCAATTTCAGCCCGAGCCG 61.764 63.158 0.00 0.00 41.25 5.52
181 182 1.745115 CAATTTCAGCCCGAGCCGA 60.745 57.895 0.00 0.00 41.25 5.54
182 183 1.745489 AATTTCAGCCCGAGCCGAC 60.745 57.895 0.00 0.00 41.25 4.79
183 184 4.735132 TTTCAGCCCGAGCCGACG 62.735 66.667 0.00 0.00 41.25 5.12
186 187 4.735132 CAGCCCGAGCCGACGAAA 62.735 66.667 0.00 0.00 41.25 3.46
187 188 3.998672 AGCCCGAGCCGACGAAAA 61.999 61.111 0.00 0.00 41.25 2.29
188 189 3.785499 GCCCGAGCCGACGAAAAC 61.785 66.667 0.00 0.00 35.09 2.43
189 190 2.048503 CCCGAGCCGACGAAAACT 60.049 61.111 0.00 0.00 35.09 2.66
190 191 2.380410 CCCGAGCCGACGAAAACTG 61.380 63.158 0.00 0.00 35.09 3.16
191 192 2.380410 CCGAGCCGACGAAAACTGG 61.380 63.158 0.00 0.00 35.09 4.00
192 193 2.380410 CGAGCCGACGAAAACTGGG 61.380 63.158 0.00 0.00 35.09 4.45
193 194 2.668550 AGCCGACGAAAACTGGGC 60.669 61.111 0.00 0.00 44.07 5.36
194 195 2.668550 GCCGACGAAAACTGGGCT 60.669 61.111 0.00 0.00 40.59 5.19
195 196 2.677979 GCCGACGAAAACTGGGCTC 61.678 63.158 0.00 0.00 40.59 4.70
196 197 1.004918 CCGACGAAAACTGGGCTCT 60.005 57.895 0.00 0.00 0.00 4.09
197 198 0.602905 CCGACGAAAACTGGGCTCTT 60.603 55.000 0.00 0.00 0.00 2.85
198 199 0.512952 CGACGAAAACTGGGCTCTTG 59.487 55.000 0.00 0.00 0.00 3.02
199 200 0.875059 GACGAAAACTGGGCTCTTGG 59.125 55.000 0.00 0.00 0.00 3.61
200 201 0.537371 ACGAAAACTGGGCTCTTGGG 60.537 55.000 0.00 0.00 0.00 4.12
201 202 1.244019 CGAAAACTGGGCTCTTGGGG 61.244 60.000 0.00 0.00 0.00 4.96
202 203 1.533994 AAAACTGGGCTCTTGGGGC 60.534 57.895 0.00 0.00 0.00 5.80
203 204 3.868200 AAACTGGGCTCTTGGGGCG 62.868 63.158 0.00 0.00 0.00 6.13
217 218 4.814294 GGCGCGACTGGACCGATT 62.814 66.667 12.10 0.00 0.00 3.34
218 219 2.813908 GCGCGACTGGACCGATTT 60.814 61.111 12.10 0.00 0.00 2.17
219 220 2.388232 GCGCGACTGGACCGATTTT 61.388 57.895 12.10 0.00 0.00 1.82
220 221 1.908066 GCGCGACTGGACCGATTTTT 61.908 55.000 12.10 0.00 0.00 1.94
234 235 3.424859 TTTTTAGCGCCGGCGGAC 61.425 61.111 45.81 31.88 46.35 4.79
245 246 2.737376 GGCGGACGAAAAGACGCT 60.737 61.111 7.83 0.00 44.37 5.07
246 247 2.315386 GGCGGACGAAAAGACGCTT 61.315 57.895 7.83 0.00 44.37 4.68
247 248 1.154654 GCGGACGAAAAGACGCTTG 60.155 57.895 0.00 0.00 42.76 4.01
248 249 1.491563 CGGACGAAAAGACGCTTGG 59.508 57.895 0.00 0.00 36.70 3.61
249 250 1.866925 GGACGAAAAGACGCTTGGG 59.133 57.895 0.00 0.00 36.70 4.12
250 251 0.601841 GGACGAAAAGACGCTTGGGA 60.602 55.000 0.00 0.00 36.70 4.37
251 252 0.790814 GACGAAAAGACGCTTGGGAG 59.209 55.000 0.00 0.00 36.70 4.30
252 253 0.602905 ACGAAAAGACGCTTGGGAGG 60.603 55.000 0.00 0.00 36.70 4.30
253 254 1.876664 GAAAAGACGCTTGGGAGGC 59.123 57.895 0.00 0.00 0.00 4.70
254 255 1.587043 GAAAAGACGCTTGGGAGGCC 61.587 60.000 0.00 0.00 0.00 5.19
255 256 2.069165 AAAAGACGCTTGGGAGGCCT 62.069 55.000 3.86 3.86 0.00 5.19
256 257 2.069165 AAAGACGCTTGGGAGGCCTT 62.069 55.000 6.77 0.00 0.00 4.35
257 258 2.436824 GACGCTTGGGAGGCCTTC 60.437 66.667 6.77 3.67 0.00 3.46
258 259 2.930562 ACGCTTGGGAGGCCTTCT 60.931 61.111 11.94 0.00 0.00 2.85
259 260 2.352805 CGCTTGGGAGGCCTTCTT 59.647 61.111 11.94 0.00 0.00 2.52
260 261 1.198759 ACGCTTGGGAGGCCTTCTTA 61.199 55.000 11.94 0.00 0.00 2.10
261 262 0.462759 CGCTTGGGAGGCCTTCTTAG 60.463 60.000 11.94 9.69 0.00 2.18
262 263 0.106967 GCTTGGGAGGCCTTCTTAGG 60.107 60.000 11.94 2.21 45.02 2.69
263 264 0.548510 CTTGGGAGGCCTTCTTAGGG 59.451 60.000 11.94 0.00 42.25 3.53
264 265 0.178843 TTGGGAGGCCTTCTTAGGGT 60.179 55.000 11.94 0.00 42.25 4.34
265 266 0.620700 TGGGAGGCCTTCTTAGGGTC 60.621 60.000 11.94 0.00 42.25 4.46
266 267 1.687297 GGGAGGCCTTCTTAGGGTCG 61.687 65.000 11.94 0.00 42.25 4.79
267 268 1.144276 GAGGCCTTCTTAGGGTCGC 59.856 63.158 6.77 0.00 42.25 5.19
268 269 2.202892 GGCCTTCTTAGGGTCGCG 60.203 66.667 0.00 0.00 42.25 5.87
269 270 2.202892 GCCTTCTTAGGGTCGCGG 60.203 66.667 6.13 0.00 42.25 6.46
270 271 2.202892 CCTTCTTAGGGTCGCGGC 60.203 66.667 6.13 3.04 37.94 6.53
271 272 2.722201 CCTTCTTAGGGTCGCGGCT 61.722 63.158 11.94 0.00 37.94 5.52
272 273 1.519455 CTTCTTAGGGTCGCGGCTG 60.519 63.158 11.94 0.00 0.00 4.85
273 274 1.945354 CTTCTTAGGGTCGCGGCTGA 61.945 60.000 11.94 0.00 0.00 4.26
274 275 1.537814 TTCTTAGGGTCGCGGCTGAA 61.538 55.000 11.94 5.17 0.00 3.02
275 276 1.519455 CTTAGGGTCGCGGCTGAAG 60.519 63.158 11.94 8.03 0.00 3.02
276 277 1.945354 CTTAGGGTCGCGGCTGAAGA 61.945 60.000 11.94 0.00 0.00 2.87
277 278 1.327690 TTAGGGTCGCGGCTGAAGAT 61.328 55.000 11.94 0.00 0.00 2.40
278 279 2.016393 TAGGGTCGCGGCTGAAGATG 62.016 60.000 11.94 0.00 0.00 2.90
279 280 3.567797 GGTCGCGGCTGAAGATGC 61.568 66.667 11.94 0.00 0.00 3.91
280 281 3.567797 GTCGCGGCTGAAGATGCC 61.568 66.667 1.90 0.00 46.42 4.40
300 301 0.534412 CTGAGGCACCTACTCCTGTG 59.466 60.000 0.00 0.00 34.06 3.66
301 302 0.904865 TGAGGCACCTACTCCTGTGG 60.905 60.000 0.00 0.00 34.06 4.17
302 303 0.905337 GAGGCACCTACTCCTGTGGT 60.905 60.000 0.00 0.00 31.71 4.16
303 304 0.412244 AGGCACCTACTCCTGTGGTA 59.588 55.000 0.00 0.00 33.08 3.25
324 325 1.072331 AGTCCCATCGCTGTCTTTGTT 59.928 47.619 0.00 0.00 0.00 2.83
333 334 3.375610 TCGCTGTCTTTGTTTTTGTGCTA 59.624 39.130 0.00 0.00 0.00 3.49
352 358 0.178921 AGTGCTCCTTGTCCTCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
357 363 0.252284 TCCTTGTCCTCTCCACTCCC 60.252 60.000 0.00 0.00 0.00 4.30
444 450 0.893727 TGGAAGCGAGGAAAAAGCCC 60.894 55.000 0.00 0.00 0.00 5.19
451 457 2.369394 CGAGGAAAAAGCCCAGCTAAT 58.631 47.619 0.00 0.00 38.25 1.73
459 466 7.839200 AGGAAAAAGCCCAGCTAATAAAGATTA 59.161 33.333 0.00 0.00 38.25 1.75
464 471 6.064717 AGCCCAGCTAATAAAGATTAAGTGG 58.935 40.000 0.00 0.00 36.99 4.00
477 484 5.958955 AGATTAAGTGGAGCAAAAGAATGC 58.041 37.500 0.00 0.00 46.78 3.56
518 525 9.914131 AATCTAAGAAATTTACCAAGAAGCAAC 57.086 29.630 0.00 0.00 0.00 4.17
552 559 0.314302 ACACTCGGCTCACACAGTAC 59.686 55.000 0.00 0.00 0.00 2.73
555 562 1.811359 ACTCGGCTCACACAGTACTAC 59.189 52.381 0.00 0.00 0.00 2.73
556 563 2.085320 CTCGGCTCACACAGTACTACT 58.915 52.381 0.00 0.00 0.00 2.57
557 564 2.082231 TCGGCTCACACAGTACTACTC 58.918 52.381 0.00 0.00 0.00 2.59
563 570 4.458295 GCTCACACAGTACTACTCCTACAA 59.542 45.833 0.00 0.00 0.00 2.41
590 597 4.440880 AGCACAGCTCTTCATCAGATTAC 58.559 43.478 0.00 0.00 30.62 1.89
726 743 1.461127 CTTAGTGCAGACAAACGGAGC 59.539 52.381 0.00 0.00 0.00 4.70
872 892 2.760385 CTCCCTCGTCACCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
875 900 4.753662 CCTCGTCACCCTCCCCGA 62.754 72.222 0.00 0.00 0.00 5.14
885 910 2.670148 CCTCCCCGACCCTTTCCAG 61.670 68.421 0.00 0.00 0.00 3.86
887 912 1.151987 TCCCCGACCCTTTCCAGAA 60.152 57.895 0.00 0.00 0.00 3.02
899 924 1.814429 TTCCAGAACCACCTTCCTCA 58.186 50.000 0.00 0.00 0.00 3.86
901 926 0.764890 CCAGAACCACCTTCCTCACA 59.235 55.000 0.00 0.00 0.00 3.58
902 927 1.271054 CCAGAACCACCTTCCTCACAG 60.271 57.143 0.00 0.00 0.00 3.66
903 928 1.417890 CAGAACCACCTTCCTCACAGT 59.582 52.381 0.00 0.00 0.00 3.55
904 929 1.417890 AGAACCACCTTCCTCACAGTG 59.582 52.381 0.00 0.00 0.00 3.66
905 930 0.179018 AACCACCTTCCTCACAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
906 931 1.302832 CCACCTTCCTCACAGTGCC 60.303 63.158 0.00 0.00 0.00 5.01
907 932 1.669115 CACCTTCCTCACAGTGCCG 60.669 63.158 0.00 0.00 0.00 5.69
908 933 2.743928 CCTTCCTCACAGTGCCGC 60.744 66.667 0.00 0.00 0.00 6.53
909 934 2.743928 CTTCCTCACAGTGCCGCC 60.744 66.667 0.00 0.00 0.00 6.13
910 935 4.329545 TTCCTCACAGTGCCGCCC 62.330 66.667 0.00 0.00 0.00 6.13
912 937 4.767255 CCTCACAGTGCCGCCCTC 62.767 72.222 0.00 0.00 0.00 4.30
913 938 4.007644 CTCACAGTGCCGCCCTCA 62.008 66.667 0.00 0.00 0.00 3.86
950 975 0.035458 CCCCGCTCCTGCCTTTATAG 59.965 60.000 0.00 0.00 35.36 1.31
952 977 0.394565 CCGCTCCTGCCTTTATAGCT 59.605 55.000 0.00 0.00 35.36 3.32
956 981 1.342819 CTCCTGCCTTTATAGCTCGCT 59.657 52.381 0.00 0.00 0.00 4.93
975 1000 2.357517 GCACTCCACCACCTCACG 60.358 66.667 0.00 0.00 0.00 4.35
1239 1272 4.124351 TGGTCCTTCTACCGCGCG 62.124 66.667 25.67 25.67 42.91 6.86
1414 1447 2.818132 CCGGCATCTCAGGTCTCC 59.182 66.667 0.00 0.00 0.00 3.71
1422 1455 0.040351 TCTCAGGTCTCCCTCCACAG 59.960 60.000 0.00 0.00 39.89 3.66
1433 1466 0.823460 CCTCCACAGCCTTCTCTCTC 59.177 60.000 0.00 0.00 0.00 3.20
1434 1467 1.619432 CCTCCACAGCCTTCTCTCTCT 60.619 57.143 0.00 0.00 0.00 3.10
1435 1468 1.750778 CTCCACAGCCTTCTCTCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
1436 1469 1.357420 TCCACAGCCTTCTCTCTCTCT 59.643 52.381 0.00 0.00 0.00 3.10
1437 1470 1.750778 CCACAGCCTTCTCTCTCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
1438 1471 2.621407 CCACAGCCTTCTCTCTCTCTCT 60.621 54.545 0.00 0.00 0.00 3.10
1439 1472 2.684881 CACAGCCTTCTCTCTCTCTCTC 59.315 54.545 0.00 0.00 0.00 3.20
1440 1473 2.578021 ACAGCCTTCTCTCTCTCTCTCT 59.422 50.000 0.00 0.00 0.00 3.10
1441 1474 3.209410 CAGCCTTCTCTCTCTCTCTCTC 58.791 54.545 0.00 0.00 0.00 3.20
1442 1475 3.118112 CAGCCTTCTCTCTCTCTCTCTCT 60.118 52.174 0.00 0.00 0.00 3.10
1443 1476 3.135530 AGCCTTCTCTCTCTCTCTCTCTC 59.864 52.174 0.00 0.00 0.00 3.20
1444 1477 3.135530 GCCTTCTCTCTCTCTCTCTCTCT 59.864 52.174 0.00 0.00 0.00 3.10
1445 1478 4.742138 GCCTTCTCTCTCTCTCTCTCTCTC 60.742 54.167 0.00 0.00 0.00 3.20
1471 1504 3.006537 TCTTCTTGGCTTGCTACTTACGT 59.993 43.478 0.00 0.00 0.00 3.57
1472 1505 4.219070 TCTTCTTGGCTTGCTACTTACGTA 59.781 41.667 0.00 0.00 0.00 3.57
1473 1506 3.841643 TCTTGGCTTGCTACTTACGTAC 58.158 45.455 0.00 0.00 0.00 3.67
1474 1507 3.508793 TCTTGGCTTGCTACTTACGTACT 59.491 43.478 0.00 0.00 0.00 2.73
1475 1508 3.498927 TGGCTTGCTACTTACGTACTC 57.501 47.619 0.00 0.00 0.00 2.59
1476 1509 2.165030 TGGCTTGCTACTTACGTACTCC 59.835 50.000 0.00 0.00 0.00 3.85
1477 1510 2.426381 GGCTTGCTACTTACGTACTCCT 59.574 50.000 0.00 0.00 0.00 3.69
1478 1511 3.436496 GCTTGCTACTTACGTACTCCTG 58.564 50.000 0.00 0.00 0.00 3.86
1582 1615 9.303116 TCTAGATTCTAGAGTGTTTTGTCTTCT 57.697 33.333 17.62 0.00 0.00 2.85
1622 1655 3.311596 GCGTGTCCAACCTACAATAATCC 59.688 47.826 0.00 0.00 0.00 3.01
1623 1656 4.766375 CGTGTCCAACCTACAATAATCCT 58.234 43.478 0.00 0.00 0.00 3.24
1626 1659 5.589050 GTGTCCAACCTACAATAATCCTTCC 59.411 44.000 0.00 0.00 0.00 3.46
1724 1757 2.408271 TGGAGTTCCATCATGACTGC 57.592 50.000 0.00 0.00 42.01 4.40
1726 1759 1.406069 GGAGTTCCATCATGACTGCGT 60.406 52.381 0.00 0.00 35.64 5.24
1821 1961 6.788456 AGGTAAGATAGAGAATTTAGGGTCCC 59.212 42.308 0.00 0.00 0.00 4.46
1823 1963 7.954620 GGTAAGATAGAGAATTTAGGGTCCCTA 59.045 40.741 14.22 14.22 34.61 3.53
1825 1965 6.011481 AGATAGAGAATTTAGGGTCCCTACG 58.989 44.000 17.99 0.00 35.63 3.51
1826 1966 2.699321 AGAGAATTTAGGGTCCCTACGC 59.301 50.000 17.99 7.93 35.63 4.42
1828 1968 0.466963 AATTTAGGGTCCCTACGCGG 59.533 55.000 17.99 0.00 43.08 6.46
1866 2006 6.598753 TCTGTGTCTTTGTTTTGTAGTAGC 57.401 37.500 0.00 0.00 0.00 3.58
1868 2008 6.257849 TCTGTGTCTTTGTTTTGTAGTAGCAG 59.742 38.462 0.00 0.00 0.00 4.24
1870 2010 4.274950 TGTCTTTGTTTTGTAGTAGCAGCC 59.725 41.667 0.00 0.00 0.00 4.85
1876 2026 5.556915 TGTTTTGTAGTAGCAGCCATAGTT 58.443 37.500 0.00 0.00 0.00 2.24
1890 2040 6.914757 GCAGCCATAGTTTTAGACATTTCATC 59.085 38.462 0.00 0.00 0.00 2.92
1891 2041 7.128331 CAGCCATAGTTTTAGACATTTCATCG 58.872 38.462 0.00 0.00 0.00 3.84
1961 2115 5.047802 AGGCACAATTCACAACTAAAGGATG 60.048 40.000 0.00 0.00 0.00 3.51
1966 2120 6.151144 ACAATTCACAACTAAAGGATGCTACC 59.849 38.462 0.00 0.00 0.00 3.18
2061 2217 4.035324 TGCACATGAAAAGCACCATTTTTG 59.965 37.500 0.00 0.00 32.62 2.44
2084 2433 2.798680 ACTCGATCTGATTCGGTTTCG 58.201 47.619 11.72 11.72 39.56 3.46
2092 2441 1.001520 TGATTCGGTTTCGCTTGGAGA 59.998 47.619 0.00 0.00 36.13 3.71
2093 2442 1.393883 GATTCGGTTTCGCTTGGAGAC 59.606 52.381 0.00 0.00 36.13 3.36
2113 2462 4.159693 AGACGAGTGACCAATATGCAGTAA 59.840 41.667 0.00 0.00 0.00 2.24
2151 2500 0.670546 TGCTGAAACTCTGCTACGGC 60.671 55.000 7.00 0.00 41.21 5.68
2155 2504 0.796927 GAAACTCTGCTACGGCCAAC 59.203 55.000 2.24 0.00 37.74 3.77
2160 2509 0.036164 TCTGCTACGGCCAACACATT 59.964 50.000 2.24 0.00 37.74 2.71
2173 2522 6.260050 CGGCCAACACATTATTTAGTAGTCAT 59.740 38.462 2.24 0.00 0.00 3.06
2229 2578 4.641396 TCTCAGTAAATGTTGTGGTCCAG 58.359 43.478 0.00 0.00 0.00 3.86
2334 2691 7.221450 TGTAACAATAAAAGCACTACCAGAGT 58.779 34.615 0.00 0.00 39.82 3.24
2335 2692 6.803154 AACAATAAAAGCACTACCAGAGTC 57.197 37.500 0.00 0.00 35.64 3.36
2358 2721 5.009110 TCGAGGACACTGCTAATCTCTATTG 59.991 44.000 0.00 0.00 0.00 1.90
2360 2723 5.911752 AGGACACTGCTAATCTCTATTGTG 58.088 41.667 0.00 0.00 0.00 3.33
2361 2724 5.658634 AGGACACTGCTAATCTCTATTGTGA 59.341 40.000 0.00 0.00 0.00 3.58
2362 2725 6.326064 AGGACACTGCTAATCTCTATTGTGAT 59.674 38.462 0.00 0.00 0.00 3.06
2363 2726 7.507277 AGGACACTGCTAATCTCTATTGTGATA 59.493 37.037 0.00 0.00 0.00 2.15
2364 2727 7.596995 GGACACTGCTAATCTCTATTGTGATAC 59.403 40.741 0.00 0.00 0.00 2.24
2413 2778 3.219281 GGTGACTTTTGGGCTGTTCTTA 58.781 45.455 0.00 0.00 0.00 2.10
2520 2888 0.685097 TTCCAGCAGGGTCTGTACAC 59.315 55.000 0.00 0.00 38.11 2.90
2606 2974 1.556911 AGATCATTGGCACCTTCGTCT 59.443 47.619 0.00 0.00 0.00 4.18
2632 3000 3.825014 TCTACACCGTTTTCTCTGCTACT 59.175 43.478 0.00 0.00 0.00 2.57
2761 3157 7.492077 AGTTATTAGCTGGGTAGTTTGTACT 57.508 36.000 0.00 0.00 38.44 2.73
2773 3169 6.821665 GGGTAGTTTGTACTGAATAGCAATGA 59.178 38.462 0.00 0.00 35.78 2.57
2775 3171 8.175716 GGTAGTTTGTACTGAATAGCAATGAAC 58.824 37.037 0.00 0.00 35.78 3.18
2780 3176 7.543947 TGTACTGAATAGCAATGAACTGATG 57.456 36.000 0.00 0.00 0.00 3.07
2782 3178 6.432607 ACTGAATAGCAATGAACTGATGTG 57.567 37.500 0.00 0.00 0.00 3.21
2783 3179 5.163683 ACTGAATAGCAATGAACTGATGTGC 60.164 40.000 0.00 0.00 35.41 4.57
2785 3181 4.895224 ATAGCAATGAACTGATGTGCTG 57.105 40.909 6.72 0.00 44.88 4.41
2790 3275 4.412207 CAATGAACTGATGTGCTGATGTG 58.588 43.478 0.00 0.00 0.00 3.21
2792 3277 3.946606 TGAACTGATGTGCTGATGTGAT 58.053 40.909 0.00 0.00 0.00 3.06
2806 3291 6.128200 TGCTGATGTGATTACAATGAACTGAC 60.128 38.462 0.00 0.00 40.84 3.51
2808 3293 4.661993 TGTGATTACAATGAACTGACGC 57.338 40.909 0.00 0.00 32.88 5.19
2828 3315 3.612860 CGCGCTTGTAACTTACATTCTCT 59.387 43.478 5.56 0.00 38.68 3.10
2922 3414 8.287503 GGTACATATCGTAACATTTTTCCATCC 58.712 37.037 0.00 0.00 37.76 3.51
3090 3582 4.097551 TGGAATGACCATGTGAGTGAAA 57.902 40.909 0.00 0.00 44.64 2.69
3137 3654 7.255451 CCTTTTCAGCAAATAGTTCCACTAACA 60.255 37.037 0.00 0.00 40.83 2.41
3148 3665 4.278419 AGTTCCACTAACAATGAAACTGCC 59.722 41.667 0.00 0.00 40.83 4.85
3166 3683 2.499693 TGCCTCCAGACGAACATATCAA 59.500 45.455 0.00 0.00 0.00 2.57
3168 3685 4.130118 GCCTCCAGACGAACATATCAAAT 58.870 43.478 0.00 0.00 0.00 2.32
3170 3687 4.024556 CCTCCAGACGAACATATCAAATGC 60.025 45.833 0.00 0.00 0.00 3.56
3173 3690 5.589855 TCCAGACGAACATATCAAATGCAAT 59.410 36.000 0.00 0.00 0.00 3.56
3175 3692 5.618395 CAGACGAACATATCAAATGCAATCG 59.382 40.000 0.00 0.00 0.00 3.34
3241 3778 4.248859 CACAATGTTCTGGGTAGTCTGAG 58.751 47.826 0.00 0.00 0.00 3.35
3244 3781 2.171840 TGTTCTGGGTAGTCTGAGCTC 58.828 52.381 6.82 6.82 0.00 4.09
3265 3802 2.647683 TCAGGTGTTGCATGTAACCA 57.352 45.000 21.81 9.00 35.01 3.67
3266 3803 2.937519 TCAGGTGTTGCATGTAACCAA 58.062 42.857 21.81 3.57 35.01 3.67
3267 3804 2.621055 TCAGGTGTTGCATGTAACCAAC 59.379 45.455 21.81 14.61 41.19 3.77
3268 3805 1.960689 AGGTGTTGCATGTAACCAACC 59.039 47.619 21.81 21.54 40.34 3.77
3269 3806 1.683917 GGTGTTGCATGTAACCAACCA 59.316 47.619 22.92 5.71 40.34 3.67
3270 3807 2.544903 GGTGTTGCATGTAACCAACCAC 60.545 50.000 22.92 15.04 40.34 4.16
3271 3808 2.099921 GTGTTGCATGTAACCAACCACA 59.900 45.455 21.81 1.36 40.34 4.17
3272 3809 2.760650 TGTTGCATGTAACCAACCACAA 59.239 40.909 21.81 0.02 40.34 3.33
3273 3810 3.386078 TGTTGCATGTAACCAACCACAAT 59.614 39.130 21.81 0.00 40.34 2.71
3274 3811 4.141846 TGTTGCATGTAACCAACCACAATT 60.142 37.500 21.81 0.00 40.34 2.32
3318 3869 2.549926 TGATGCTAACATAGTGGCACG 58.450 47.619 12.71 0.15 36.35 5.34
3320 3871 2.465860 TGCTAACATAGTGGCACGTT 57.534 45.000 12.71 12.76 0.00 3.99
3321 3872 3.596310 TGCTAACATAGTGGCACGTTA 57.404 42.857 12.71 13.20 0.00 3.18
3322 3873 4.131649 TGCTAACATAGTGGCACGTTAT 57.868 40.909 12.71 2.62 0.00 1.89
3323 3874 4.116961 TGCTAACATAGTGGCACGTTATC 58.883 43.478 12.71 10.62 0.00 1.75
3324 3875 3.181774 GCTAACATAGTGGCACGTTATCG 59.818 47.826 12.71 5.59 43.34 2.92
3325 3876 8.831490 ATGCTAACATAGTGGCACGTTATCGT 62.831 42.308 12.71 8.88 42.42 3.73
3358 3909 3.909995 AGCTATGGGATATGGTGTAGCAA 59.090 43.478 0.00 0.00 37.57 3.91
3359 3910 4.003648 GCTATGGGATATGGTGTAGCAAC 58.996 47.826 0.00 0.00 35.75 4.17
3362 3913 3.111484 TGGGATATGGTGTAGCAACTCA 58.889 45.455 0.00 0.00 0.00 3.41
3381 3932 4.699257 ACTCAATCTGTTTTCTCATGCCTC 59.301 41.667 0.00 0.00 0.00 4.70
3393 3944 5.474578 TCTCATGCCTCACCTATCAATAC 57.525 43.478 0.00 0.00 0.00 1.89
3403 3954 5.655394 TCACCTATCAATACCAGAGGCTAT 58.345 41.667 0.00 0.00 0.00 2.97
3405 3956 7.422512 TCACCTATCAATACCAGAGGCTATAT 58.577 38.462 0.00 0.00 0.00 0.86
3407 3958 9.373450 CACCTATCAATACCAGAGGCTATATAT 57.627 37.037 0.00 0.00 0.00 0.86
3432 4027 6.071320 ACCTGAAAAACTTCATTCCTAAGCT 58.929 36.000 0.00 0.00 0.00 3.74
3519 4114 1.208776 CACCAGGTGATCATCAGAGCA 59.791 52.381 15.35 0.00 37.94 4.26
3578 4173 1.017387 CCGCTACCAAAAGCTGATCC 58.983 55.000 0.00 0.00 40.49 3.36
3580 4175 1.739035 CGCTACCAAAAGCTGATCCGA 60.739 52.381 0.00 0.00 40.49 4.55
3612 4207 5.357878 AGCTTCTTTGTGATGTCTTGTTTCA 59.642 36.000 0.00 0.00 0.00 2.69
3680 4287 3.242867 TCCTGACTGAATCCAGACTTGT 58.757 45.455 0.00 0.00 43.02 3.16
3696 4303 3.454375 ACTTGTGTGTGTTAAGACTCCG 58.546 45.455 4.21 0.00 0.00 4.63
3715 4330 1.448985 GGTGTGACAGTTGTGTGTGT 58.551 50.000 0.00 0.00 36.88 3.72
3736 4354 8.299570 GTGTGTTCTCATTGTGGAAGATTTAAT 58.700 33.333 0.00 0.00 0.00 1.40
3737 4355 9.513906 TGTGTTCTCATTGTGGAAGATTTAATA 57.486 29.630 0.00 0.00 0.00 0.98
3781 4403 1.115930 CCCTATAGCTGCTCCCGTGT 61.116 60.000 4.91 0.00 0.00 4.49
3812 4437 4.699735 TGGAATGTTGACAACGATGCTAAT 59.300 37.500 13.46 0.00 0.00 1.73
3886 4614 1.700955 TACCGAGATCCTAAGCCACC 58.299 55.000 0.00 0.00 0.00 4.61
3903 4632 3.500680 GCCACCGAAACTAGATGAAAACA 59.499 43.478 0.00 0.00 0.00 2.83
3989 4723 2.879103 TGAGAGAAATGAACCCCCAC 57.121 50.000 0.00 0.00 0.00 4.61
4001 4737 2.845345 CCCCCACTGGCCAACTCTT 61.845 63.158 7.01 0.00 0.00 2.85
4016 4752 4.697352 CCAACTCTTCGGAAACAGATGATT 59.303 41.667 7.71 0.00 0.00 2.57
4031 4768 0.462581 TGATTGAGATCAGCACGCCC 60.463 55.000 0.00 0.00 37.37 6.13
4032 4769 1.493950 GATTGAGATCAGCACGCCCG 61.494 60.000 0.00 0.00 32.33 6.13
4033 4770 1.960040 ATTGAGATCAGCACGCCCGA 61.960 55.000 0.00 0.00 0.00 5.14
4075 4817 6.447162 AGTTTTCTCCGTTTCATTTGAATCC 58.553 36.000 0.00 0.00 33.54 3.01
4078 4820 1.129624 TCCGTTTCATTTGAATCCGCG 59.870 47.619 0.00 0.00 33.54 6.46
4157 4915 4.349342 GGGGACAAGTATGAAGATGGAGAT 59.651 45.833 0.00 0.00 0.00 2.75
4165 4923 4.912317 ATGAAGATGGAGATGAGGATGG 57.088 45.455 0.00 0.00 0.00 3.51
4174 4932 4.133078 GGAGATGAGGATGGTTGATTGAC 58.867 47.826 0.00 0.00 0.00 3.18
4177 4935 1.628340 TGAGGATGGTTGATTGACGGT 59.372 47.619 0.00 0.00 0.00 4.83
4178 4936 2.009774 GAGGATGGTTGATTGACGGTG 58.990 52.381 0.00 0.00 0.00 4.94
4180 4938 2.569853 AGGATGGTTGATTGACGGTGTA 59.430 45.455 0.00 0.00 0.00 2.90
4181 4939 3.008594 AGGATGGTTGATTGACGGTGTAA 59.991 43.478 0.00 0.00 0.00 2.41
4182 4940 3.754323 GGATGGTTGATTGACGGTGTAAA 59.246 43.478 0.00 0.00 0.00 2.01
4186 4944 1.816074 TGATTGACGGTGTAAAGGCC 58.184 50.000 0.00 0.00 0.00 5.19
4210 4987 4.607606 CCGATAGTGCGCGCTCGA 62.608 66.667 33.12 26.32 38.10 4.04
4309 5089 1.589196 CAAGGTCTAGCGCGTAGGC 60.589 63.158 8.43 9.79 31.89 3.93
4328 5114 1.449353 GGCTAGAGCATCCCCACTG 59.551 63.158 3.54 0.00 44.36 3.66
4329 5115 1.050988 GGCTAGAGCATCCCCACTGA 61.051 60.000 3.54 0.00 44.36 3.41
4330 5116 0.392336 GCTAGAGCATCCCCACTGAG 59.608 60.000 0.00 0.00 41.59 3.35
4331 5117 1.047002 CTAGAGCATCCCCACTGAGG 58.953 60.000 0.00 0.00 33.66 3.86
4332 5118 0.339859 TAGAGCATCCCCACTGAGGT 59.660 55.000 0.00 0.00 33.66 3.85
4333 5119 1.222936 GAGCATCCCCACTGAGGTG 59.777 63.158 0.00 0.00 42.65 4.00
4334 5120 1.229625 AGCATCCCCACTGAGGTGA 60.230 57.895 0.00 0.00 45.61 4.02
4335 5121 0.842030 AGCATCCCCACTGAGGTGAA 60.842 55.000 0.00 0.00 45.61 3.18
4337 5123 1.826385 CATCCCCACTGAGGTGAAAC 58.174 55.000 0.00 0.00 45.61 2.78
4338 5124 1.352352 CATCCCCACTGAGGTGAAACT 59.648 52.381 0.00 0.00 45.61 2.66
4339 5125 0.764890 TCCCCACTGAGGTGAAACTG 59.235 55.000 0.00 0.00 45.61 3.16
4340 5126 0.250901 CCCCACTGAGGTGAAACTGG 60.251 60.000 0.00 0.00 45.61 4.00
4341 5127 0.250901 CCCACTGAGGTGAAACTGGG 60.251 60.000 0.00 0.00 45.61 4.45
4342 5128 0.764890 CCACTGAGGTGAAACTGGGA 59.235 55.000 0.00 0.00 45.61 4.37
4344 5130 2.498167 CACTGAGGTGAAACTGGGAAG 58.502 52.381 0.00 0.00 45.61 3.46
4345 5131 2.104792 CACTGAGGTGAAACTGGGAAGA 59.895 50.000 0.00 0.00 45.61 2.87
4346 5132 2.370189 ACTGAGGTGAAACTGGGAAGAG 59.630 50.000 0.00 0.00 36.74 2.85
4347 5133 2.634940 CTGAGGTGAAACTGGGAAGAGA 59.365 50.000 0.00 0.00 36.74 3.10
4348 5134 3.045634 TGAGGTGAAACTGGGAAGAGAA 58.954 45.455 0.00 0.00 36.74 2.87
4350 5136 4.006319 GAGGTGAAACTGGGAAGAGAATG 58.994 47.826 0.00 0.00 36.74 2.67
4351 5137 2.489722 GGTGAAACTGGGAAGAGAATGC 59.510 50.000 0.00 0.00 36.74 3.56
4352 5138 2.489722 GTGAAACTGGGAAGAGAATGCC 59.510 50.000 0.00 0.00 0.00 4.40
4353 5139 2.108075 TGAAACTGGGAAGAGAATGCCA 59.892 45.455 0.00 0.00 38.63 4.92
4354 5140 3.245371 TGAAACTGGGAAGAGAATGCCAT 60.245 43.478 0.00 0.00 40.30 4.40
4355 5141 2.431954 ACTGGGAAGAGAATGCCATG 57.568 50.000 0.00 0.00 40.30 3.66
4356 5142 1.030457 CTGGGAAGAGAATGCCATGC 58.970 55.000 0.00 0.00 40.30 4.06
4357 5143 0.396139 TGGGAAGAGAATGCCATGCC 60.396 55.000 0.00 0.00 35.69 4.40
4359 5145 1.316651 GGAAGAGAATGCCATGCCTC 58.683 55.000 0.00 0.53 0.00 4.70
4360 5146 1.409241 GGAAGAGAATGCCATGCCTCA 60.409 52.381 9.21 0.00 0.00 3.86
4361 5147 1.948145 GAAGAGAATGCCATGCCTCAG 59.052 52.381 9.21 0.00 0.00 3.35
4362 5148 1.210538 AGAGAATGCCATGCCTCAGA 58.789 50.000 9.21 0.00 0.00 3.27
4363 5149 1.562942 AGAGAATGCCATGCCTCAGAA 59.437 47.619 9.21 0.00 0.00 3.02
4365 5151 2.957006 GAGAATGCCATGCCTCAGAATT 59.043 45.455 3.35 0.00 0.00 2.17
4366 5152 2.693591 AGAATGCCATGCCTCAGAATTG 59.306 45.455 0.00 0.00 0.00 2.32
4367 5153 2.154567 ATGCCATGCCTCAGAATTGT 57.845 45.000 0.00 0.00 0.00 2.71
4369 5155 0.179119 GCCATGCCTCAGAATTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
4370 5156 0.458669 CCATGCCTCAGAATTGTGCC 59.541 55.000 0.00 0.00 0.00 5.01
4371 5157 1.179152 CATGCCTCAGAATTGTGCCA 58.821 50.000 0.00 0.00 0.00 4.92
4372 5158 1.134367 CATGCCTCAGAATTGTGCCAG 59.866 52.381 0.00 0.00 0.00 4.85
4373 5159 0.111061 TGCCTCAGAATTGTGCCAGT 59.889 50.000 0.00 0.00 0.00 4.00
4374 5160 0.807496 GCCTCAGAATTGTGCCAGTC 59.193 55.000 0.00 0.00 0.00 3.51
4375 5161 1.612726 GCCTCAGAATTGTGCCAGTCT 60.613 52.381 0.00 0.00 0.00 3.24
4376 5162 2.082231 CCTCAGAATTGTGCCAGTCTG 58.918 52.381 0.00 0.00 39.09 3.51
4378 5164 1.171308 CAGAATTGTGCCAGTCTGGG 58.829 55.000 20.72 2.60 38.19 4.45
4429 5295 4.371624 TCCACTTCATGTCAAATGAGGT 57.628 40.909 0.00 0.00 38.62 3.85
4489 5355 4.767255 GGCTCCAGTGTGAGGCGG 62.767 72.222 15.81 0.00 46.24 6.13
4513 5379 5.067023 GGGCATCTTTCTCCTTGTATTTCTG 59.933 44.000 0.00 0.00 0.00 3.02
4529 5395 4.808414 TTTCTGATGTACTCCCTCTGTG 57.192 45.455 0.00 0.00 0.00 3.66
4530 5396 3.458044 TCTGATGTACTCCCTCTGTGT 57.542 47.619 0.00 0.00 0.00 3.72
4531 5397 3.779444 TCTGATGTACTCCCTCTGTGTT 58.221 45.455 0.00 0.00 0.00 3.32
4532 5398 4.930696 TCTGATGTACTCCCTCTGTGTTA 58.069 43.478 0.00 0.00 0.00 2.41
4533 5399 4.950475 TCTGATGTACTCCCTCTGTGTTAG 59.050 45.833 0.00 0.00 0.00 2.34
4534 5400 4.673968 TGATGTACTCCCTCTGTGTTAGT 58.326 43.478 0.00 0.00 0.00 2.24
4535 5401 5.084519 TGATGTACTCCCTCTGTGTTAGTT 58.915 41.667 0.00 0.00 0.00 2.24
4536 5402 6.250711 TGATGTACTCCCTCTGTGTTAGTTA 58.749 40.000 0.00 0.00 0.00 2.24
4537 5403 6.377429 TGATGTACTCCCTCTGTGTTAGTTAG 59.623 42.308 0.00 0.00 0.00 2.34
4538 5404 5.014858 TGTACTCCCTCTGTGTTAGTTAGG 58.985 45.833 0.00 0.00 0.00 2.69
4539 5405 4.399483 ACTCCCTCTGTGTTAGTTAGGA 57.601 45.455 0.00 0.00 0.00 2.94
4540 5406 4.748701 ACTCCCTCTGTGTTAGTTAGGAA 58.251 43.478 0.00 0.00 0.00 3.36
4541 5407 4.773149 ACTCCCTCTGTGTTAGTTAGGAAG 59.227 45.833 0.00 0.00 0.00 3.46
4542 5408 5.006896 TCCCTCTGTGTTAGTTAGGAAGA 57.993 43.478 0.00 0.00 0.00 2.87
4543 5409 5.399991 TCCCTCTGTGTTAGTTAGGAAGAA 58.600 41.667 0.00 0.00 0.00 2.52
4544 5410 6.023603 TCCCTCTGTGTTAGTTAGGAAGAAT 58.976 40.000 0.00 0.00 0.00 2.40
4545 5411 6.070767 TCCCTCTGTGTTAGTTAGGAAGAATG 60.071 42.308 0.00 0.00 0.00 2.67
4546 5412 6.070767 CCCTCTGTGTTAGTTAGGAAGAATGA 60.071 42.308 0.00 0.00 0.00 2.57
4547 5413 7.038659 CCTCTGTGTTAGTTAGGAAGAATGAG 58.961 42.308 0.00 0.00 0.00 2.90
4548 5414 7.093727 CCTCTGTGTTAGTTAGGAAGAATGAGA 60.094 40.741 0.00 0.00 0.00 3.27
4549 5415 8.367660 TCTGTGTTAGTTAGGAAGAATGAGAT 57.632 34.615 0.00 0.00 0.00 2.75
4550 5416 8.816894 TCTGTGTTAGTTAGGAAGAATGAGATT 58.183 33.333 0.00 0.00 0.00 2.40
4551 5417 8.777865 TGTGTTAGTTAGGAAGAATGAGATTG 57.222 34.615 0.00 0.00 0.00 2.67
4552 5418 7.334421 TGTGTTAGTTAGGAAGAATGAGATTGC 59.666 37.037 0.00 0.00 0.00 3.56
4553 5419 7.334421 GTGTTAGTTAGGAAGAATGAGATTGCA 59.666 37.037 0.00 0.00 0.00 4.08
4554 5420 7.334421 TGTTAGTTAGGAAGAATGAGATTGCAC 59.666 37.037 0.00 0.00 0.00 4.57
4555 5421 4.872691 AGTTAGGAAGAATGAGATTGCACG 59.127 41.667 0.00 0.00 0.00 5.34
4556 5422 3.616956 AGGAAGAATGAGATTGCACGA 57.383 42.857 0.00 0.00 0.00 4.35
4557 5423 3.942829 AGGAAGAATGAGATTGCACGAA 58.057 40.909 0.00 0.00 0.00 3.85
4558 5424 4.521146 AGGAAGAATGAGATTGCACGAAT 58.479 39.130 0.00 0.00 0.00 3.34
4559 5425 4.574013 AGGAAGAATGAGATTGCACGAATC 59.426 41.667 0.00 0.00 40.92 2.52
4560 5426 4.512657 GAAGAATGAGATTGCACGAATCG 58.487 43.478 0.00 0.00 44.72 3.34
4561 5427 3.785486 AGAATGAGATTGCACGAATCGA 58.215 40.909 10.55 0.00 44.72 3.59
4562 5428 4.375272 AGAATGAGATTGCACGAATCGAT 58.625 39.130 10.55 0.00 44.72 3.59
4563 5429 5.532557 AGAATGAGATTGCACGAATCGATA 58.467 37.500 10.55 0.00 44.72 2.92
4564 5430 5.985530 AGAATGAGATTGCACGAATCGATAA 59.014 36.000 10.55 1.48 44.72 1.75
4565 5431 6.648310 AGAATGAGATTGCACGAATCGATAAT 59.352 34.615 10.55 6.57 44.72 1.28
4566 5432 6.791887 ATGAGATTGCACGAATCGATAATT 57.208 33.333 10.55 0.00 44.72 1.40
4567 5433 7.889589 ATGAGATTGCACGAATCGATAATTA 57.110 32.000 10.55 0.00 44.72 1.40
4568 5434 7.889589 TGAGATTGCACGAATCGATAATTAT 57.110 32.000 10.55 0.00 44.72 1.28
4569 5435 8.310406 TGAGATTGCACGAATCGATAATTATT 57.690 30.769 10.55 0.00 44.72 1.40
4570 5436 8.223100 TGAGATTGCACGAATCGATAATTATTG 58.777 33.333 10.55 6.38 44.72 1.90
4571 5437 8.310406 AGATTGCACGAATCGATAATTATTGA 57.690 30.769 16.19 16.19 44.72 2.57
4572 5438 8.939929 AGATTGCACGAATCGATAATTATTGAT 58.060 29.630 18.84 18.84 44.72 2.57
4573 5439 9.546909 GATTGCACGAATCGATAATTATTGATT 57.453 29.630 29.36 29.36 45.14 2.57
4574 5440 8.712341 TTGCACGAATCGATAATTATTGATTG 57.288 30.769 32.20 26.15 43.46 2.67
4575 5441 7.860613 TGCACGAATCGATAATTATTGATTGT 58.139 30.769 32.20 26.58 43.46 2.71
4576 5442 7.798052 TGCACGAATCGATAATTATTGATTGTG 59.202 33.333 32.04 32.04 43.46 3.33
4577 5443 8.009409 GCACGAATCGATAATTATTGATTGTGA 58.991 33.333 35.27 16.54 43.46 3.58
4578 5444 9.521179 CACGAATCGATAATTATTGATTGTGAG 57.479 33.333 32.35 25.46 43.46 3.51
4579 5445 8.223769 ACGAATCGATAATTATTGATTGTGAGC 58.776 33.333 32.20 21.10 43.46 4.26
4580 5446 8.223100 CGAATCGATAATTATTGATTGTGAGCA 58.777 33.333 32.20 6.55 43.46 4.26
4582 5448 9.836076 AATCGATAATTATTGATTGTGAGCATG 57.164 29.630 28.77 0.00 42.41 4.06
4583 5449 7.809665 TCGATAATTATTGATTGTGAGCATGG 58.190 34.615 10.84 0.00 0.00 3.66
4584 5450 7.445096 TCGATAATTATTGATTGTGAGCATGGT 59.555 33.333 10.84 0.00 0.00 3.55
4585 5451 7.536281 CGATAATTATTGATTGTGAGCATGGTG 59.464 37.037 0.00 0.00 0.00 4.17
4586 5452 2.953466 ATTGATTGTGAGCATGGTGC 57.047 45.000 0.00 0.00 45.46 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.987704 TTTCCCGCGGCGAATCAATG 61.988 55.000 25.92 2.11 0.00 2.82
1 2 1.747367 TTTCCCGCGGCGAATCAAT 60.747 52.632 25.92 0.00 0.00 2.57
2 3 2.358860 TTTCCCGCGGCGAATCAA 60.359 55.556 25.92 7.35 0.00 2.57
3 4 3.122323 GTTTCCCGCGGCGAATCA 61.122 61.111 25.92 8.08 0.00 2.57
4 5 4.218478 CGTTTCCCGCGGCGAATC 62.218 66.667 25.92 20.47 0.00 2.52
5 6 4.745751 TCGTTTCCCGCGGCGAAT 62.746 61.111 25.92 0.00 36.19 3.34
12 13 3.564027 CATCGCCTCGTTTCCCGC 61.564 66.667 0.00 0.00 36.19 6.13
13 14 1.227263 ATCATCGCCTCGTTTCCCG 60.227 57.895 0.00 0.00 38.13 5.14
14 15 0.179084 TCATCATCGCCTCGTTTCCC 60.179 55.000 0.00 0.00 0.00 3.97
15 16 0.931005 GTCATCATCGCCTCGTTTCC 59.069 55.000 0.00 0.00 0.00 3.13
16 17 0.572590 CGTCATCATCGCCTCGTTTC 59.427 55.000 0.00 0.00 0.00 2.78
17 18 0.172578 TCGTCATCATCGCCTCGTTT 59.827 50.000 0.00 0.00 0.00 3.60
18 19 0.525668 GTCGTCATCATCGCCTCGTT 60.526 55.000 0.00 0.00 0.00 3.85
19 20 1.064296 GTCGTCATCATCGCCTCGT 59.936 57.895 0.00 0.00 0.00 4.18
20 21 2.006062 CGTCGTCATCATCGCCTCG 61.006 63.158 0.00 0.00 0.00 4.63
21 22 0.248498 TTCGTCGTCATCATCGCCTC 60.248 55.000 0.00 0.00 0.00 4.70
22 23 0.248661 CTTCGTCGTCATCATCGCCT 60.249 55.000 0.00 0.00 0.00 5.52
23 24 1.209275 CCTTCGTCGTCATCATCGCC 61.209 60.000 0.00 0.00 0.00 5.54
24 25 1.209275 CCCTTCGTCGTCATCATCGC 61.209 60.000 0.00 0.00 0.00 4.58
25 26 0.595053 CCCCTTCGTCGTCATCATCG 60.595 60.000 0.00 0.00 0.00 3.84
26 27 0.876342 GCCCCTTCGTCGTCATCATC 60.876 60.000 0.00 0.00 0.00 2.92
27 28 1.144057 GCCCCTTCGTCGTCATCAT 59.856 57.895 0.00 0.00 0.00 2.45
28 29 2.577059 GCCCCTTCGTCGTCATCA 59.423 61.111 0.00 0.00 0.00 3.07
29 30 2.582498 CGCCCCTTCGTCGTCATC 60.582 66.667 0.00 0.00 0.00 2.92
30 31 3.064987 CTCGCCCCTTCGTCGTCAT 62.065 63.158 0.00 0.00 0.00 3.06
31 32 3.744719 CTCGCCCCTTCGTCGTCA 61.745 66.667 0.00 0.00 0.00 4.35
32 33 2.868999 CTTCTCGCCCCTTCGTCGTC 62.869 65.000 0.00 0.00 0.00 4.20
33 34 2.987547 TTCTCGCCCCTTCGTCGT 60.988 61.111 0.00 0.00 0.00 4.34
34 35 2.202623 CTTCTCGCCCCTTCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
35 36 1.139947 CTCTTCTCGCCCCTTCGTC 59.860 63.158 0.00 0.00 0.00 4.20
36 37 2.352032 CCTCTTCTCGCCCCTTCGT 61.352 63.158 0.00 0.00 0.00 3.85
37 38 2.496817 CCTCTTCTCGCCCCTTCG 59.503 66.667 0.00 0.00 0.00 3.79
38 39 0.686769 TACCCTCTTCTCGCCCCTTC 60.687 60.000 0.00 0.00 0.00 3.46
39 40 0.688087 CTACCCTCTTCTCGCCCCTT 60.688 60.000 0.00 0.00 0.00 3.95
40 41 1.075896 CTACCCTCTTCTCGCCCCT 60.076 63.158 0.00 0.00 0.00 4.79
41 42 1.076192 TCTACCCTCTTCTCGCCCC 60.076 63.158 0.00 0.00 0.00 5.80
42 43 0.396001 ACTCTACCCTCTTCTCGCCC 60.396 60.000 0.00 0.00 0.00 6.13
43 44 1.026584 GACTCTACCCTCTTCTCGCC 58.973 60.000 0.00 0.00 0.00 5.54
44 45 0.658897 CGACTCTACCCTCTTCTCGC 59.341 60.000 0.00 0.00 0.00 5.03
45 46 0.658897 GCGACTCTACCCTCTTCTCG 59.341 60.000 0.00 0.00 0.00 4.04
46 47 1.673920 CAGCGACTCTACCCTCTTCTC 59.326 57.143 0.00 0.00 0.00 2.87
47 48 1.282447 TCAGCGACTCTACCCTCTTCT 59.718 52.381 0.00 0.00 0.00 2.85
48 49 1.402613 GTCAGCGACTCTACCCTCTTC 59.597 57.143 0.00 0.00 0.00 2.87
49 50 1.465794 GTCAGCGACTCTACCCTCTT 58.534 55.000 0.00 0.00 0.00 2.85
50 51 0.745128 CGTCAGCGACTCTACCCTCT 60.745 60.000 7.03 0.00 41.33 3.69
51 52 1.722677 CGTCAGCGACTCTACCCTC 59.277 63.158 7.03 0.00 41.33 4.30
52 53 2.408241 GCGTCAGCGACTCTACCCT 61.408 63.158 7.03 0.00 41.33 4.34
53 54 2.102553 GCGTCAGCGACTCTACCC 59.897 66.667 7.03 0.00 41.33 3.69
83 84 0.593773 TCGTTTTTGGCGCAAAGAGC 60.594 50.000 10.83 0.00 34.72 4.09
84 85 2.050477 ATCGTTTTTGGCGCAAAGAG 57.950 45.000 10.83 0.39 34.72 2.85
85 86 2.389998 GAATCGTTTTTGGCGCAAAGA 58.610 42.857 10.83 2.64 34.72 2.52
86 87 1.122323 CGAATCGTTTTTGGCGCAAAG 59.878 47.619 10.83 0.00 34.72 2.77
87 88 1.124462 CGAATCGTTTTTGGCGCAAA 58.876 45.000 10.83 0.00 0.00 3.68
88 89 1.272114 GCGAATCGTTTTTGGCGCAA 61.272 50.000 10.83 0.00 43.45 4.85
89 90 1.727723 GCGAATCGTTTTTGGCGCA 60.728 52.632 10.83 0.00 43.45 6.09
90 91 2.433334 GGCGAATCGTTTTTGGCGC 61.433 57.895 4.07 0.00 43.27 6.53
91 92 1.799916 GGGCGAATCGTTTTTGGCG 60.800 57.895 4.07 0.00 31.83 5.69
92 93 1.799916 CGGGCGAATCGTTTTTGGC 60.800 57.895 4.07 6.24 0.00 4.52
93 94 1.154112 CCGGGCGAATCGTTTTTGG 60.154 57.895 4.07 0.00 0.00 3.28
94 95 1.799916 GCCGGGCGAATCGTTTTTG 60.800 57.895 1.81 0.00 0.00 2.44
95 96 2.564458 GCCGGGCGAATCGTTTTT 59.436 55.556 1.81 0.00 0.00 1.94
135 136 4.280019 ACCCAACCCGAACCTGGC 62.280 66.667 0.00 0.00 0.00 4.85
136 137 2.033602 GACCCAACCCGAACCTGG 59.966 66.667 0.00 0.00 0.00 4.45
137 138 2.033602 GGACCCAACCCGAACCTG 59.966 66.667 0.00 0.00 0.00 4.00
154 155 4.834892 CTGAAATTGGCGCCGGCG 62.835 66.667 43.13 43.13 41.24 6.46
156 157 4.496927 GGCTGAAATTGGCGCCGG 62.497 66.667 23.90 0.00 32.22 6.13
157 158 4.496927 GGGCTGAAATTGGCGCCG 62.497 66.667 23.90 6.39 43.38 6.46
158 159 4.496927 CGGGCTGAAATTGGCGCC 62.497 66.667 22.73 22.73 41.75 6.53
159 160 3.401243 CTCGGGCTGAAATTGGCGC 62.401 63.158 0.00 0.00 37.90 6.53
160 161 2.793946 CTCGGGCTGAAATTGGCG 59.206 61.111 0.00 0.00 0.00 5.69
161 162 2.491621 GCTCGGGCTGAAATTGGC 59.508 61.111 0.00 0.00 35.22 4.52
162 163 3.200522 GGCTCGGGCTGAAATTGG 58.799 61.111 7.48 0.00 38.73 3.16
169 170 4.735132 TTTCGTCGGCTCGGGCTG 62.735 66.667 10.77 10.77 45.61 4.85
170 171 3.998672 TTTTCGTCGGCTCGGGCT 61.999 61.111 7.48 0.00 38.73 5.19
171 172 3.785499 GTTTTCGTCGGCTCGGGC 61.785 66.667 0.00 0.00 37.82 6.13
172 173 2.048503 AGTTTTCGTCGGCTCGGG 60.049 61.111 0.00 0.00 0.00 5.14
173 174 2.380410 CCAGTTTTCGTCGGCTCGG 61.380 63.158 0.00 0.00 0.00 4.63
174 175 2.380410 CCCAGTTTTCGTCGGCTCG 61.380 63.158 0.00 0.00 0.00 5.03
175 176 2.677979 GCCCAGTTTTCGTCGGCTC 61.678 63.158 0.00 0.00 36.65 4.70
176 177 2.668550 GCCCAGTTTTCGTCGGCT 60.669 61.111 0.00 0.00 36.65 5.52
177 178 2.668550 AGCCCAGTTTTCGTCGGC 60.669 61.111 0.00 0.00 40.03 5.54
178 179 0.602905 AAGAGCCCAGTTTTCGTCGG 60.603 55.000 0.00 0.00 0.00 4.79
179 180 0.512952 CAAGAGCCCAGTTTTCGTCG 59.487 55.000 0.00 0.00 0.00 5.12
180 181 0.875059 CCAAGAGCCCAGTTTTCGTC 59.125 55.000 0.00 0.00 0.00 4.20
181 182 0.537371 CCCAAGAGCCCAGTTTTCGT 60.537 55.000 0.00 0.00 0.00 3.85
182 183 1.244019 CCCCAAGAGCCCAGTTTTCG 61.244 60.000 0.00 0.00 0.00 3.46
183 184 1.536073 GCCCCAAGAGCCCAGTTTTC 61.536 60.000 0.00 0.00 0.00 2.29
184 185 1.533994 GCCCCAAGAGCCCAGTTTT 60.534 57.895 0.00 0.00 0.00 2.43
185 186 2.118294 GCCCCAAGAGCCCAGTTT 59.882 61.111 0.00 0.00 0.00 2.66
186 187 4.351054 CGCCCCAAGAGCCCAGTT 62.351 66.667 0.00 0.00 0.00 3.16
200 201 4.814294 AATCGGTCCAGTCGCGCC 62.814 66.667 0.00 0.00 0.00 6.53
201 202 1.908066 AAAAATCGGTCCAGTCGCGC 61.908 55.000 0.00 0.00 0.00 6.86
202 203 2.159181 AAAAATCGGTCCAGTCGCG 58.841 52.632 0.00 0.00 0.00 5.87
217 218 3.424859 GTCCGCCGGCGCTAAAAA 61.425 61.111 42.39 19.42 38.24 1.94
225 226 3.785499 GTCTTTTCGTCCGCCGGC 61.785 66.667 19.07 19.07 37.11 6.13
226 227 3.475774 CGTCTTTTCGTCCGCCGG 61.476 66.667 0.00 0.00 37.11 6.13
227 228 4.130281 GCGTCTTTTCGTCCGCCG 62.130 66.667 0.00 0.00 40.25 6.46
228 229 2.315386 AAGCGTCTTTTCGTCCGCC 61.315 57.895 0.00 0.00 46.85 6.13
229 230 1.154654 CAAGCGTCTTTTCGTCCGC 60.155 57.895 0.00 0.00 46.07 5.54
230 231 1.491563 CCAAGCGTCTTTTCGTCCG 59.508 57.895 0.00 0.00 0.00 4.79
231 232 0.601841 TCCCAAGCGTCTTTTCGTCC 60.602 55.000 0.00 0.00 0.00 4.79
232 233 0.790814 CTCCCAAGCGTCTTTTCGTC 59.209 55.000 0.00 0.00 0.00 4.20
233 234 0.602905 CCTCCCAAGCGTCTTTTCGT 60.603 55.000 0.00 0.00 0.00 3.85
234 235 1.912371 GCCTCCCAAGCGTCTTTTCG 61.912 60.000 0.00 0.00 0.00 3.46
235 236 1.587043 GGCCTCCCAAGCGTCTTTTC 61.587 60.000 0.00 0.00 0.00 2.29
236 237 1.603739 GGCCTCCCAAGCGTCTTTT 60.604 57.895 0.00 0.00 0.00 2.27
237 238 2.034221 GGCCTCCCAAGCGTCTTT 59.966 61.111 0.00 0.00 0.00 2.52
238 239 2.470938 GAAGGCCTCCCAAGCGTCTT 62.471 60.000 5.23 0.00 0.00 3.01
239 240 2.930562 AAGGCCTCCCAAGCGTCT 60.931 61.111 5.23 0.00 0.00 4.18
240 241 2.436824 GAAGGCCTCCCAAGCGTC 60.437 66.667 5.23 0.00 0.00 5.19
241 242 1.198759 TAAGAAGGCCTCCCAAGCGT 61.199 55.000 5.23 0.00 0.00 5.07
242 243 0.462759 CTAAGAAGGCCTCCCAAGCG 60.463 60.000 5.23 0.00 0.00 4.68
243 244 0.106967 CCTAAGAAGGCCTCCCAAGC 60.107 60.000 5.23 0.00 35.64 4.01
244 245 0.548510 CCCTAAGAAGGCCTCCCAAG 59.451 60.000 5.23 1.49 42.14 3.61
245 246 0.178843 ACCCTAAGAAGGCCTCCCAA 60.179 55.000 5.23 0.00 42.14 4.12
246 247 0.620700 GACCCTAAGAAGGCCTCCCA 60.621 60.000 5.23 0.00 42.14 4.37
247 248 1.687297 CGACCCTAAGAAGGCCTCCC 61.687 65.000 5.23 0.23 42.14 4.30
248 249 1.823976 CGACCCTAAGAAGGCCTCC 59.176 63.158 5.23 0.00 42.14 4.30
249 250 1.144276 GCGACCCTAAGAAGGCCTC 59.856 63.158 5.23 0.00 42.14 4.70
250 251 2.722201 CGCGACCCTAAGAAGGCCT 61.722 63.158 0.00 0.00 42.14 5.19
251 252 2.202892 CGCGACCCTAAGAAGGCC 60.203 66.667 0.00 0.00 42.14 5.19
252 253 2.202892 CCGCGACCCTAAGAAGGC 60.203 66.667 8.23 0.00 42.14 4.35
253 254 2.202892 GCCGCGACCCTAAGAAGG 60.203 66.667 8.23 0.00 43.25 3.46
254 255 1.519455 CAGCCGCGACCCTAAGAAG 60.519 63.158 8.23 0.00 0.00 2.85
255 256 1.537814 TTCAGCCGCGACCCTAAGAA 61.538 55.000 8.23 0.00 0.00 2.52
256 257 1.945354 CTTCAGCCGCGACCCTAAGA 61.945 60.000 8.23 0.00 0.00 2.10
257 258 1.519455 CTTCAGCCGCGACCCTAAG 60.519 63.158 8.23 0.34 0.00 2.18
258 259 1.327690 ATCTTCAGCCGCGACCCTAA 61.328 55.000 8.23 0.00 0.00 2.69
259 260 1.756950 ATCTTCAGCCGCGACCCTA 60.757 57.895 8.23 0.00 0.00 3.53
260 261 3.077556 ATCTTCAGCCGCGACCCT 61.078 61.111 8.23 0.00 0.00 4.34
261 262 2.892425 CATCTTCAGCCGCGACCC 60.892 66.667 8.23 0.00 0.00 4.46
262 263 3.567797 GCATCTTCAGCCGCGACC 61.568 66.667 8.23 0.00 0.00 4.79
263 264 3.567797 GGCATCTTCAGCCGCGAC 61.568 66.667 8.23 0.00 43.15 5.19
269 270 4.555610 CCTCAGGGCATCTTCAGC 57.444 61.111 0.00 0.00 0.00 4.26
279 280 1.002274 AGGAGTAGGTGCCTCAGGG 59.998 63.158 0.00 0.00 0.00 4.45
280 281 0.616111 ACAGGAGTAGGTGCCTCAGG 60.616 60.000 0.00 0.00 30.41 3.86
281 282 0.534412 CACAGGAGTAGGTGCCTCAG 59.466 60.000 0.00 0.00 30.41 3.35
282 283 0.904865 CCACAGGAGTAGGTGCCTCA 60.905 60.000 0.00 0.00 33.72 3.86
290 291 2.816411 TGGGACTTACCACAGGAGTAG 58.184 52.381 0.00 0.00 41.20 2.57
300 301 0.824759 AGACAGCGATGGGACTTACC 59.175 55.000 5.32 0.00 38.08 2.85
301 302 2.673368 CAAAGACAGCGATGGGACTTAC 59.327 50.000 5.32 0.00 0.00 2.34
302 303 2.301870 ACAAAGACAGCGATGGGACTTA 59.698 45.455 5.32 0.00 0.00 2.24
303 304 1.072331 ACAAAGACAGCGATGGGACTT 59.928 47.619 5.32 4.93 0.00 3.01
324 325 2.878406 GACAAGGAGCACTAGCACAAAA 59.122 45.455 0.00 0.00 45.49 2.44
333 334 0.178921 TGGAGAGGACAAGGAGCACT 60.179 55.000 0.00 0.00 0.00 4.40
357 363 0.755079 TCGATCAATCCTCCAGCAGG 59.245 55.000 0.00 0.00 45.15 4.85
396 402 3.608316 TTGCTTTGGCTTTTGTTCTGT 57.392 38.095 0.00 0.00 39.59 3.41
444 450 7.792374 TGCTCCACTTAATCTTTATTAGCTG 57.208 36.000 0.00 0.00 0.00 4.24
451 457 8.028938 GCATTCTTTTGCTCCACTTAATCTTTA 58.971 33.333 0.00 0.00 39.57 1.85
459 466 2.961062 AGTGCATTCTTTTGCTCCACTT 59.039 40.909 0.00 0.00 43.18 3.16
477 484 6.227298 TCTTAGATTCTCCCTTGCTTAGTG 57.773 41.667 0.00 0.00 0.00 2.74
479 486 8.744568 AATTTCTTAGATTCTCCCTTGCTTAG 57.255 34.615 0.00 0.00 0.00 2.18
482 489 7.558081 GGTAAATTTCTTAGATTCTCCCTTGCT 59.442 37.037 0.00 0.00 0.00 3.91
487 494 9.462606 TTCTTGGTAAATTTCTTAGATTCTCCC 57.537 33.333 0.00 0.00 0.00 4.30
518 525 2.155732 CGAGTGTGACGTCCATTTTCTG 59.844 50.000 14.12 0.00 0.00 3.02
552 559 2.230508 TGTGCTTCGGTTGTAGGAGTAG 59.769 50.000 0.00 0.00 0.00 2.57
555 562 1.714794 CTGTGCTTCGGTTGTAGGAG 58.285 55.000 0.00 0.00 0.00 3.69
556 563 0.320421 GCTGTGCTTCGGTTGTAGGA 60.320 55.000 0.00 0.00 0.00 2.94
557 564 0.320771 AGCTGTGCTTCGGTTGTAGG 60.321 55.000 0.00 0.00 33.89 3.18
563 570 0.322975 ATGAAGAGCTGTGCTTCGGT 59.677 50.000 8.61 0.00 43.57 4.69
590 597 0.819582 AAAGAAATGCTCCGCCATGG 59.180 50.000 7.63 7.63 40.09 3.66
686 703 9.961265 CACTAAGCATCATTGTTTCATCAATAT 57.039 29.630 0.00 0.00 36.44 1.28
722 739 2.456948 GCGCTTCTTTCTCCGCTCC 61.457 63.158 0.00 0.00 42.83 4.70
726 743 0.670546 TTCCAGCGCTTCTTTCTCCG 60.671 55.000 7.50 0.00 0.00 4.63
862 882 4.716977 AGGGTCGGGGAGGGTGAC 62.717 72.222 0.00 0.00 0.00 3.67
872 892 0.605589 GTGGTTCTGGAAAGGGTCGG 60.606 60.000 0.00 0.00 0.00 4.79
875 900 1.145119 GAAGGTGGTTCTGGAAAGGGT 59.855 52.381 0.00 0.00 31.73 4.34
885 910 1.884235 CACTGTGAGGAAGGTGGTTC 58.116 55.000 0.32 0.00 0.00 3.62
887 912 1.451936 GCACTGTGAGGAAGGTGGT 59.548 57.895 12.86 0.00 0.00 4.16
899 924 4.008933 GAGTGAGGGCGGCACTGT 62.009 66.667 10.77 0.00 45.94 3.55
902 927 3.941657 GAGTGAGTGAGGGCGGCAC 62.942 68.421 12.47 0.00 36.53 5.01
903 928 3.695606 GAGTGAGTGAGGGCGGCA 61.696 66.667 12.47 0.00 0.00 5.69
904 929 3.386237 AGAGTGAGTGAGGGCGGC 61.386 66.667 0.00 0.00 0.00 6.53
905 930 2.219325 GACAGAGTGAGTGAGGGCGG 62.219 65.000 0.00 0.00 0.00 6.13
906 931 1.214062 GACAGAGTGAGTGAGGGCG 59.786 63.158 0.00 0.00 0.00 6.13
907 932 0.037790 GTGACAGAGTGAGTGAGGGC 60.038 60.000 0.00 0.00 0.00 5.19
908 933 1.543802 GAGTGACAGAGTGAGTGAGGG 59.456 57.143 0.00 0.00 0.00 4.30
909 934 2.030363 GTGAGTGACAGAGTGAGTGAGG 60.030 54.545 0.00 0.00 0.00 3.86
910 935 2.030363 GGTGAGTGACAGAGTGAGTGAG 60.030 54.545 0.00 0.00 0.00 3.51
911 936 1.957177 GGTGAGTGACAGAGTGAGTGA 59.043 52.381 0.00 0.00 0.00 3.41
912 937 1.000283 GGGTGAGTGACAGAGTGAGTG 60.000 57.143 0.00 0.00 0.00 3.51
913 938 1.333177 GGGTGAGTGACAGAGTGAGT 58.667 55.000 0.00 0.00 0.00 3.41
950 975 3.426568 GGTGGAGTGCAAGCGAGC 61.427 66.667 0.00 0.00 0.00 5.03
952 977 2.280797 GTGGTGGAGTGCAAGCGA 60.281 61.111 0.00 0.00 0.00 4.93
956 981 1.148273 GTGAGGTGGTGGAGTGCAA 59.852 57.895 0.00 0.00 0.00 4.08
975 1000 0.657840 GTGTGTTGTGAGCTGTGACC 59.342 55.000 0.00 0.00 0.00 4.02
977 1002 0.463654 GGGTGTGTTGTGAGCTGTGA 60.464 55.000 0.00 0.00 0.00 3.58
1017 1043 3.787001 CTGCTCCGGGAAGGGGAC 61.787 72.222 0.00 0.00 46.06 4.46
1042 1069 0.101040 CTCTCTCGCTTGCTCTCTGG 59.899 60.000 0.00 0.00 0.00 3.86
1043 1070 1.064505 CTCTCTCTCGCTTGCTCTCTG 59.935 57.143 0.00 0.00 0.00 3.35
1044 1071 1.065491 TCTCTCTCTCGCTTGCTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
1045 1072 1.331756 CTCTCTCTCTCGCTTGCTCTC 59.668 57.143 0.00 0.00 0.00 3.20
1191 1224 2.523412 CCGGGCTCGAATAGGGGA 60.523 66.667 8.08 0.00 39.00 4.81
1194 1227 2.523412 TCCCCGGGCTCGAATAGG 60.523 66.667 17.73 0.00 39.00 2.57
1414 1447 0.823460 GAGAGAGAAGGCTGTGGAGG 59.177 60.000 0.00 0.00 0.00 4.30
1422 1455 3.135530 AGAGAGAGAGAGAGAGAGAAGGC 59.864 52.174 0.00 0.00 0.00 4.35
1433 1466 2.780010 AGAAGAGGGGAGAGAGAGAGAG 59.220 54.545 0.00 0.00 0.00 3.20
1434 1467 2.858644 AGAAGAGGGGAGAGAGAGAGA 58.141 52.381 0.00 0.00 0.00 3.10
1435 1468 3.290710 CAAGAAGAGGGGAGAGAGAGAG 58.709 54.545 0.00 0.00 0.00 3.20
1436 1469 2.024464 CCAAGAAGAGGGGAGAGAGAGA 60.024 54.545 0.00 0.00 0.00 3.10
1437 1470 2.387757 CCAAGAAGAGGGGAGAGAGAG 58.612 57.143 0.00 0.00 0.00 3.20
1438 1471 1.621072 GCCAAGAAGAGGGGAGAGAGA 60.621 57.143 0.00 0.00 0.00 3.10
1439 1472 0.829990 GCCAAGAAGAGGGGAGAGAG 59.170 60.000 0.00 0.00 0.00 3.20
1440 1473 0.415429 AGCCAAGAAGAGGGGAGAGA 59.585 55.000 0.00 0.00 0.00 3.10
1441 1474 1.065564 CAAGCCAAGAAGAGGGGAGAG 60.066 57.143 0.00 0.00 0.00 3.20
1442 1475 0.987294 CAAGCCAAGAAGAGGGGAGA 59.013 55.000 0.00 0.00 0.00 3.71
1443 1476 0.679321 GCAAGCCAAGAAGAGGGGAG 60.679 60.000 0.00 0.00 0.00 4.30
1444 1477 1.136329 AGCAAGCCAAGAAGAGGGGA 61.136 55.000 0.00 0.00 0.00 4.81
1445 1478 0.620556 TAGCAAGCCAAGAAGAGGGG 59.379 55.000 0.00 0.00 0.00 4.79
1471 1504 1.142870 AGCAACAAACAGCCAGGAGTA 59.857 47.619 0.00 0.00 0.00 2.59
1472 1505 0.106519 AGCAACAAACAGCCAGGAGT 60.107 50.000 0.00 0.00 0.00 3.85
1473 1506 1.000938 GAAGCAACAAACAGCCAGGAG 60.001 52.381 0.00 0.00 0.00 3.69
1474 1507 1.032014 GAAGCAACAAACAGCCAGGA 58.968 50.000 0.00 0.00 0.00 3.86
1475 1508 0.746063 TGAAGCAACAAACAGCCAGG 59.254 50.000 0.00 0.00 0.00 4.45
1476 1509 1.134753 TGTGAAGCAACAAACAGCCAG 59.865 47.619 0.00 0.00 0.00 4.85
1477 1510 1.134753 CTGTGAAGCAACAAACAGCCA 59.865 47.619 0.00 0.00 34.19 4.75
1478 1511 1.536709 CCTGTGAAGCAACAAACAGCC 60.537 52.381 0.00 0.00 38.95 4.85
1582 1615 4.142138 ACACGCAACCCATTTCACTTTTTA 60.142 37.500 0.00 0.00 0.00 1.52
1622 1655 7.883311 TGTTTAATAAAGTGAAGGGAGAGGAAG 59.117 37.037 0.00 0.00 0.00 3.46
1623 1656 7.751646 TGTTTAATAAAGTGAAGGGAGAGGAA 58.248 34.615 0.00 0.00 0.00 3.36
1626 1659 8.507249 CAACTGTTTAATAAAGTGAAGGGAGAG 58.493 37.037 0.00 0.00 0.00 3.20
1707 1740 2.015736 ACGCAGTCATGATGGAACTC 57.984 50.000 0.00 0.00 29.74 3.01
1708 1741 2.479566 AACGCAGTCATGATGGAACT 57.520 45.000 0.00 0.00 45.00 3.01
1709 1742 5.696270 TGATATAACGCAGTCATGATGGAAC 59.304 40.000 0.00 0.00 45.00 3.62
1710 1743 5.852827 TGATATAACGCAGTCATGATGGAA 58.147 37.500 0.00 0.00 45.00 3.53
1713 1746 6.956299 TGATGATATAACGCAGTCATGATG 57.044 37.500 0.00 0.00 45.00 3.07
1714 1747 7.381323 TCTTGATGATATAACGCAGTCATGAT 58.619 34.615 0.00 0.00 45.00 2.45
1716 1749 7.330208 TCATCTTGATGATATAACGCAGTCATG 59.670 37.037 9.02 0.00 34.28 3.07
1717 1750 7.381323 TCATCTTGATGATATAACGCAGTCAT 58.619 34.615 9.02 0.00 34.28 3.06
1718 1751 6.748132 TCATCTTGATGATATAACGCAGTCA 58.252 36.000 9.02 0.00 34.28 3.41
1723 1756 8.925700 TGTATGTTCATCTTGATGATATAACGC 58.074 33.333 13.26 5.28 35.06 4.84
1797 1937 6.788456 AGGGACCCTAAATTCTCTATCTTACC 59.212 42.308 12.85 0.00 28.47 2.85
1800 1940 6.494146 CGTAGGGACCCTAAATTCTCTATCTT 59.506 42.308 22.46 0.00 37.91 2.40
1804 1944 3.893813 GCGTAGGGACCCTAAATTCTCTA 59.106 47.826 22.46 0.00 37.91 2.43
1821 1961 3.864686 GTGCACATGGCCGCGTAG 61.865 66.667 13.17 0.00 43.89 3.51
1825 1965 1.353609 GATTTTGTGCACATGGCCGC 61.354 55.000 22.39 4.82 43.89 6.53
1826 1966 0.244450 AGATTTTGTGCACATGGCCG 59.756 50.000 22.39 0.00 43.89 6.13
1828 1968 2.443887 ACAGATTTTGTGCACATGGC 57.556 45.000 22.39 10.64 38.99 4.40
1866 2006 7.128331 CGATGAAATGTCTAAAACTATGGCTG 58.872 38.462 0.00 0.00 0.00 4.85
1868 2008 6.430451 CCGATGAAATGTCTAAAACTATGGC 58.570 40.000 0.00 0.00 0.00 4.40
1870 2010 7.015226 TGCCGATGAAATGTCTAAAACTATG 57.985 36.000 0.00 0.00 0.00 2.23
1876 2026 5.240623 ACAGTTTGCCGATGAAATGTCTAAA 59.759 36.000 0.00 0.00 0.00 1.85
1890 2040 1.207593 GCAGCAGTACAGTTTGCCG 59.792 57.895 0.00 0.00 41.17 5.69
1891 2041 0.239347 CTGCAGCAGTACAGTTTGCC 59.761 55.000 14.90 0.00 41.17 4.52
1961 2115 7.209760 GCATCAAAAGATGAGCTCTGGTAGC 62.210 48.000 16.19 0.00 42.53 3.58
1966 2120 3.487711 GCTGCATCAAAAGATGAGCTCTG 60.488 47.826 16.19 3.51 42.53 3.35
2018 2172 3.118775 GCACCTTTGACCTTTTGAGGTTT 60.119 43.478 0.00 0.00 43.24 3.27
2061 2217 4.204573 CGAAACCGAATCAGATCGAGTAAC 59.795 45.833 0.00 0.00 45.48 2.50
2084 2433 0.033504 TTGGTCACTCGTCTCCAAGC 59.966 55.000 0.00 0.00 35.42 4.01
2092 2441 4.465632 TTACTGCATATTGGTCACTCGT 57.534 40.909 0.00 0.00 0.00 4.18
2093 2442 7.658179 AATATTACTGCATATTGGTCACTCG 57.342 36.000 0.00 0.00 29.66 4.18
2123 2472 4.044426 GCAGAGTTTCAGCAAACGAATTT 58.956 39.130 0.00 0.00 45.81 1.82
2229 2578 4.459685 TCAGGAGCAGTAAGTAGTGAGAAC 59.540 45.833 0.00 0.00 0.00 3.01
2334 2691 3.006112 AGAGATTAGCAGTGTCCTCGA 57.994 47.619 0.00 0.00 0.00 4.04
2335 2692 5.218885 CAATAGAGATTAGCAGTGTCCTCG 58.781 45.833 0.00 0.00 0.00 4.63
2358 2721 4.184629 GTGTCCTCCTGTCATTGTATCAC 58.815 47.826 0.00 0.00 0.00 3.06
2360 2723 4.471904 TGTGTCCTCCTGTCATTGTATC 57.528 45.455 0.00 0.00 0.00 2.24
2361 2724 4.471025 TGATGTGTCCTCCTGTCATTGTAT 59.529 41.667 0.00 0.00 0.00 2.29
2362 2725 3.837731 TGATGTGTCCTCCTGTCATTGTA 59.162 43.478 0.00 0.00 0.00 2.41
2363 2726 2.639347 TGATGTGTCCTCCTGTCATTGT 59.361 45.455 0.00 0.00 0.00 2.71
2364 2727 3.339253 TGATGTGTCCTCCTGTCATTG 57.661 47.619 0.00 0.00 0.00 2.82
2413 2778 2.204059 AGGGACAGCTTCCTGGCT 60.204 61.111 12.71 0.00 46.79 4.75
2606 2974 3.724374 CAGAGAAAACGGTGTAGACCAA 58.276 45.455 10.08 0.00 43.33 3.67
2620 2988 3.261643 TCTTGGCATCAGTAGCAGAGAAA 59.738 43.478 0.00 0.00 0.00 2.52
2626 2994 1.571955 TCCTCTTGGCATCAGTAGCA 58.428 50.000 0.00 0.00 0.00 3.49
2632 3000 0.332293 TGGCATTCCTCTTGGCATCA 59.668 50.000 0.00 0.00 43.77 3.07
2761 3157 4.945543 AGCACATCAGTTCATTGCTATTCA 59.054 37.500 0.00 0.00 41.72 2.57
2773 3169 5.247862 TGTAATCACATCAGCACATCAGTT 58.752 37.500 0.00 0.00 0.00 3.16
2775 3171 5.806366 TTGTAATCACATCAGCACATCAG 57.194 39.130 0.00 0.00 33.76 2.90
2780 3176 6.025896 CAGTTCATTGTAATCACATCAGCAC 58.974 40.000 0.00 0.00 33.76 4.40
2782 3178 6.253746 GTCAGTTCATTGTAATCACATCAGC 58.746 40.000 0.00 0.00 33.76 4.26
2783 3179 6.472680 CGTCAGTTCATTGTAATCACATCAG 58.527 40.000 0.00 0.00 33.76 2.90
2785 3181 5.258622 GCGTCAGTTCATTGTAATCACATC 58.741 41.667 0.00 0.00 33.76 3.06
2790 3275 2.348666 AGCGCGTCAGTTCATTGTAATC 59.651 45.455 8.43 0.00 0.00 1.75
2792 3277 1.790755 AGCGCGTCAGTTCATTGTAA 58.209 45.000 8.43 0.00 0.00 2.41
2806 3291 3.612860 AGAGAATGTAAGTTACAAGCGCG 59.387 43.478 19.19 0.00 42.76 6.86
2808 3293 4.929808 ACCAGAGAATGTAAGTTACAAGCG 59.070 41.667 19.19 5.74 42.76 4.68
2828 3315 1.202915 TGGAGCAAGCAAGATGAACCA 60.203 47.619 0.00 0.00 0.00 3.67
2883 3375 9.926158 TTACGATATGTACCAAAACACTTAGAA 57.074 29.630 0.00 0.00 31.20 2.10
2884 3376 9.357652 GTTACGATATGTACCAAAACACTTAGA 57.642 33.333 0.00 0.00 31.20 2.10
2885 3377 9.142515 TGTTACGATATGTACCAAAACACTTAG 57.857 33.333 0.00 0.00 31.20 2.18
2886 3378 9.656040 ATGTTACGATATGTACCAAAACACTTA 57.344 29.630 0.00 0.00 28.55 2.24
2887 3379 7.966246 TGTTACGATATGTACCAAAACACTT 57.034 32.000 0.00 0.00 31.20 3.16
2888 3380 8.556213 AATGTTACGATATGTACCAAAACACT 57.444 30.769 0.00 0.00 28.55 3.55
2912 3404 2.690497 TCACAAGCAACGGATGGAAAAA 59.310 40.909 0.00 0.00 0.00 1.94
2922 3414 3.003689 AGGATCTGTTTTCACAAGCAACG 59.996 43.478 0.00 0.00 30.36 4.10
3090 3582 1.645710 CAAGTAGGTGAGAGTGGGGT 58.354 55.000 0.00 0.00 0.00 4.95
3137 3654 1.347707 TCGTCTGGAGGCAGTTTCATT 59.652 47.619 0.00 0.00 0.00 2.57
3148 3665 4.571984 TGCATTTGATATGTTCGTCTGGAG 59.428 41.667 0.00 0.00 0.00 3.86
3191 3709 5.242795 ACTATCAACTAATATGCCCCACC 57.757 43.478 0.00 0.00 0.00 4.61
3241 3778 1.171308 ACATGCAACACCTGATGAGC 58.829 50.000 0.00 0.00 34.74 4.26
3244 3781 2.819019 TGGTTACATGCAACACCTGATG 59.181 45.455 10.90 0.00 0.00 3.07
3327 3878 9.333961 ACACCATATCCCATAGCTTACTTATTA 57.666 33.333 0.00 0.00 0.00 0.98
3328 3879 8.219660 ACACCATATCCCATAGCTTACTTATT 57.780 34.615 0.00 0.00 0.00 1.40
3329 3880 7.814693 ACACCATATCCCATAGCTTACTTAT 57.185 36.000 0.00 0.00 0.00 1.73
3330 3881 7.093465 GCTACACCATATCCCATAGCTTACTTA 60.093 40.741 0.00 0.00 33.75 2.24
3331 3882 6.295916 GCTACACCATATCCCATAGCTTACTT 60.296 42.308 0.00 0.00 33.75 2.24
3332 3883 5.187967 GCTACACCATATCCCATAGCTTACT 59.812 44.000 0.00 0.00 33.75 2.24
3333 3884 5.046591 TGCTACACCATATCCCATAGCTTAC 60.047 44.000 0.00 0.00 36.75 2.34
3358 3909 4.660168 AGGCATGAGAAAACAGATTGAGT 58.340 39.130 0.00 0.00 0.00 3.41
3359 3910 4.698780 TGAGGCATGAGAAAACAGATTGAG 59.301 41.667 0.00 0.00 0.00 3.02
3362 3913 3.760684 GGTGAGGCATGAGAAAACAGATT 59.239 43.478 0.00 0.00 0.00 2.40
3381 3932 7.667575 ATATAGCCTCTGGTATTGATAGGTG 57.332 40.000 0.00 0.00 36.59 4.00
3393 3944 8.598041 AGTTTTTCAGGTATATATAGCCTCTGG 58.402 37.037 16.49 4.28 0.00 3.86
3405 3956 9.174166 GCTTAGGAATGAAGTTTTTCAGGTATA 57.826 33.333 0.00 0.00 45.89 1.47
3407 3958 7.231467 AGCTTAGGAATGAAGTTTTTCAGGTA 58.769 34.615 0.00 0.00 45.89 3.08
3430 4025 4.503741 TCCACTGCAAAATCAAACTAGC 57.496 40.909 0.00 0.00 0.00 3.42
3432 4027 6.716628 AGAAGATCCACTGCAAAATCAAACTA 59.283 34.615 0.00 0.00 0.00 2.24
3495 4090 2.766263 TCTGATGATCACCTGGTGGTAC 59.234 50.000 25.67 16.80 46.60 3.34
3519 4114 3.160269 CCTGCTCTTGTTGAAGGGAATT 58.840 45.455 0.00 0.00 30.10 2.17
3578 4173 5.264060 TCACAAAGAAGCTCGTTATTTCG 57.736 39.130 0.00 0.00 26.57 3.46
3580 4175 6.428159 AGACATCACAAAGAAGCTCGTTATTT 59.572 34.615 0.00 0.00 29.31 1.40
3680 4287 1.758280 ACACCGGAGTCTTAACACACA 59.242 47.619 9.46 0.00 0.00 3.72
3696 4303 1.448985 ACACACACAACTGTCACACC 58.551 50.000 0.00 0.00 0.00 4.16
3737 4355 9.908152 GGAAACTACAGCAACAAATTATAACTT 57.092 29.630 0.00 0.00 0.00 2.66
3738 4356 8.520351 GGGAAACTACAGCAACAAATTATAACT 58.480 33.333 0.00 0.00 0.00 2.24
3757 4379 2.050918 GGGAGCAGCTATAGGGAAACT 58.949 52.381 0.00 0.00 0.00 2.66
3781 4403 4.438065 CGTTGTCAACATTCCAGACACAAA 60.438 41.667 15.79 0.00 41.53 2.83
3921 4650 3.409026 TCAGAGCAAAACCTTCTCTCC 57.591 47.619 0.00 0.00 35.19 3.71
3967 4696 3.445096 GTGGGGGTTCATTTCTCTCATTG 59.555 47.826 0.00 0.00 0.00 2.82
3989 4723 0.875059 GTTTCCGAAGAGTTGGCCAG 59.125 55.000 5.11 0.00 0.00 4.85
4001 4737 5.343307 TGATCTCAATCATCTGTTTCCGA 57.657 39.130 0.00 0.00 36.98 4.55
4016 4752 3.068064 TCGGGCGTGCTGATCTCA 61.068 61.111 0.00 0.00 0.00 3.27
4031 4768 2.281208 TCCAACCCGCAAACCTCG 60.281 61.111 0.00 0.00 0.00 4.63
4032 4769 0.536460 TTCTCCAACCCGCAAACCTC 60.536 55.000 0.00 0.00 0.00 3.85
4033 4770 0.537371 CTTCTCCAACCCGCAAACCT 60.537 55.000 0.00 0.00 0.00 3.50
4061 4803 2.477863 CCCTCGCGGATTCAAATGAAAC 60.478 50.000 6.13 0.00 37.61 2.78
4078 4820 2.775032 TACCGTTCGTTGCAGCCCTC 62.775 60.000 0.00 0.00 0.00 4.30
4082 4824 1.491563 CACTACCGTTCGTTGCAGC 59.508 57.895 0.00 0.00 0.00 5.25
4157 4915 1.628340 ACCGTCAATCAACCATCCTCA 59.372 47.619 0.00 0.00 0.00 3.86
4165 4923 2.095415 GGCCTTTACACCGTCAATCAAC 60.095 50.000 0.00 0.00 0.00 3.18
4209 4986 3.755628 TGCCGTGGCGTAGAGGTC 61.756 66.667 6.37 0.00 45.51 3.85
4210 4987 4.065281 GTGCCGTGGCGTAGAGGT 62.065 66.667 6.37 0.00 45.51 3.85
4309 5089 2.136878 AGTGGGGATGCTCTAGCCG 61.137 63.158 0.00 0.00 41.18 5.52
4310 5090 1.050988 TCAGTGGGGATGCTCTAGCC 61.051 60.000 0.00 0.00 41.18 3.93
4328 5114 3.771577 TTCTCTTCCCAGTTTCACCTC 57.228 47.619 0.00 0.00 0.00 3.85
4329 5115 3.812167 GCATTCTCTTCCCAGTTTCACCT 60.812 47.826 0.00 0.00 0.00 4.00
4330 5116 2.489722 GCATTCTCTTCCCAGTTTCACC 59.510 50.000 0.00 0.00 0.00 4.02
4331 5117 2.489722 GGCATTCTCTTCCCAGTTTCAC 59.510 50.000 0.00 0.00 0.00 3.18
4332 5118 2.108075 TGGCATTCTCTTCCCAGTTTCA 59.892 45.455 0.00 0.00 0.00 2.69
4333 5119 2.795329 TGGCATTCTCTTCCCAGTTTC 58.205 47.619 0.00 0.00 0.00 2.78
4334 5120 2.978156 TGGCATTCTCTTCCCAGTTT 57.022 45.000 0.00 0.00 0.00 2.66
4335 5121 2.731572 CATGGCATTCTCTTCCCAGTT 58.268 47.619 0.00 0.00 0.00 3.16
4337 5123 1.030457 GCATGGCATTCTCTTCCCAG 58.970 55.000 0.00 0.00 0.00 4.45
4338 5124 0.396139 GGCATGGCATTCTCTTCCCA 60.396 55.000 15.47 0.00 0.00 4.37
4339 5125 0.106318 AGGCATGGCATTCTCTTCCC 60.106 55.000 22.64 0.00 0.00 3.97
4340 5126 1.316651 GAGGCATGGCATTCTCTTCC 58.683 55.000 22.64 0.00 0.00 3.46
4341 5127 1.948145 CTGAGGCATGGCATTCTCTTC 59.052 52.381 22.64 8.69 0.00 2.87
4342 5128 1.562942 TCTGAGGCATGGCATTCTCTT 59.437 47.619 22.64 0.00 0.00 2.85
4344 5130 2.048444 TTCTGAGGCATGGCATTCTC 57.952 50.000 22.64 16.42 0.00 2.87
4345 5131 2.693591 CAATTCTGAGGCATGGCATTCT 59.306 45.455 22.64 0.00 0.00 2.40
4346 5132 2.429610 ACAATTCTGAGGCATGGCATTC 59.570 45.455 22.64 11.71 0.00 2.67
4347 5133 2.167693 CACAATTCTGAGGCATGGCATT 59.832 45.455 22.64 8.93 0.00 3.56
4348 5134 1.754803 CACAATTCTGAGGCATGGCAT 59.245 47.619 22.64 6.48 0.00 4.40
4350 5136 0.179119 GCACAATTCTGAGGCATGGC 60.179 55.000 12.14 12.14 0.00 4.40
4351 5137 0.458669 GGCACAATTCTGAGGCATGG 59.541 55.000 0.00 0.00 38.38 3.66
4352 5138 1.134367 CTGGCACAATTCTGAGGCATG 59.866 52.381 0.00 0.00 45.28 4.06
4353 5139 1.272313 ACTGGCACAATTCTGAGGCAT 60.272 47.619 0.00 0.00 45.28 4.40
4354 5140 0.111061 ACTGGCACAATTCTGAGGCA 59.889 50.000 0.00 0.00 44.48 4.75
4355 5141 0.807496 GACTGGCACAATTCTGAGGC 59.193 55.000 0.00 0.00 38.70 4.70
4356 5142 2.082231 CAGACTGGCACAATTCTGAGG 58.918 52.381 0.00 0.00 45.98 3.86
4357 5143 2.082231 CCAGACTGGCACAATTCTGAG 58.918 52.381 8.99 0.00 45.98 3.35
4359 5145 1.171308 CCCAGACTGGCACAATTCTG 58.829 55.000 16.72 0.00 43.99 3.02
4360 5146 3.658398 CCCAGACTGGCACAATTCT 57.342 52.632 16.72 0.00 38.70 2.40
4369 5155 1.341080 ACAATTTTGGCCCAGACTGG 58.659 50.000 15.15 15.15 37.25 4.00
4370 5156 2.548493 CCAACAATTTTGGCCCAGACTG 60.548 50.000 0.00 0.00 32.18 3.51
4371 5157 1.693606 CCAACAATTTTGGCCCAGACT 59.306 47.619 0.00 0.00 32.18 3.24
4372 5158 1.416030 ACCAACAATTTTGGCCCAGAC 59.584 47.619 15.22 0.00 43.23 3.51
4373 5159 1.799933 ACCAACAATTTTGGCCCAGA 58.200 45.000 15.22 0.00 43.23 3.86
4374 5160 2.220313 CAACCAACAATTTTGGCCCAG 58.780 47.619 15.22 4.24 43.23 4.45
4375 5161 1.748591 GCAACCAACAATTTTGGCCCA 60.749 47.619 15.22 0.00 43.23 5.36
4376 5162 0.950836 GCAACCAACAATTTTGGCCC 59.049 50.000 15.22 4.94 43.23 5.80
4378 5164 1.872952 GAGGCAACCAACAATTTTGGC 59.127 47.619 15.22 10.87 43.23 4.52
4379 5165 3.392882 GAGAGGCAACCAACAATTTTGG 58.607 45.455 14.24 14.24 44.91 3.28
4429 5295 3.193267 ACAAGCAACTTCAGCAGTTTGAA 59.807 39.130 0.00 0.00 43.89 2.69
4452 5318 1.452833 GGAGGAACCATGCTCAGGC 60.453 63.158 0.00 0.00 45.17 4.85
4472 5338 4.767255 CCGCCTCACACTGGAGCC 62.767 72.222 0.00 0.00 33.47 4.70
4489 5355 5.067023 CAGAAATACAAGGAGAAAGATGCCC 59.933 44.000 0.00 0.00 0.00 5.36
4493 5359 9.606631 GTACATCAGAAATACAAGGAGAAAGAT 57.393 33.333 0.00 0.00 0.00 2.40
4513 5379 5.662674 AACTAACACAGAGGGAGTACATC 57.337 43.478 0.00 0.00 0.00 3.06
4529 5395 7.464710 CGTGCAATCTCATTCTTCCTAACTAAC 60.465 40.741 0.00 0.00 0.00 2.34
4530 5396 6.535150 CGTGCAATCTCATTCTTCCTAACTAA 59.465 38.462 0.00 0.00 0.00 2.24
4531 5397 6.042777 CGTGCAATCTCATTCTTCCTAACTA 58.957 40.000 0.00 0.00 0.00 2.24
4532 5398 4.872691 CGTGCAATCTCATTCTTCCTAACT 59.127 41.667 0.00 0.00 0.00 2.24
4533 5399 4.870426 TCGTGCAATCTCATTCTTCCTAAC 59.130 41.667 0.00 0.00 0.00 2.34
4534 5400 5.084818 TCGTGCAATCTCATTCTTCCTAA 57.915 39.130 0.00 0.00 0.00 2.69
4535 5401 4.736126 TCGTGCAATCTCATTCTTCCTA 57.264 40.909 0.00 0.00 0.00 2.94
4536 5402 3.616956 TCGTGCAATCTCATTCTTCCT 57.383 42.857 0.00 0.00 0.00 3.36
4537 5403 4.551603 CGATTCGTGCAATCTCATTCTTCC 60.552 45.833 0.00 0.00 39.15 3.46
4538 5404 4.268644 TCGATTCGTGCAATCTCATTCTTC 59.731 41.667 5.89 0.00 39.15 2.87
4539 5405 4.183865 TCGATTCGTGCAATCTCATTCTT 58.816 39.130 5.89 0.00 39.15 2.52
4540 5406 3.785486 TCGATTCGTGCAATCTCATTCT 58.215 40.909 5.89 0.00 39.15 2.40
4541 5407 4.722203 ATCGATTCGTGCAATCTCATTC 57.278 40.909 5.89 0.00 39.15 2.67
4542 5408 6.791887 ATTATCGATTCGTGCAATCTCATT 57.208 33.333 1.71 0.00 39.15 2.57
4543 5409 6.791887 AATTATCGATTCGTGCAATCTCAT 57.208 33.333 1.71 0.00 39.15 2.90
4544 5410 7.889589 ATAATTATCGATTCGTGCAATCTCA 57.110 32.000 1.71 0.00 39.15 3.27
4545 5411 8.435430 TCAATAATTATCGATTCGTGCAATCTC 58.565 33.333 1.71 0.00 39.15 2.75
4546 5412 8.310406 TCAATAATTATCGATTCGTGCAATCT 57.690 30.769 1.71 0.00 39.15 2.40
4547 5413 9.546909 AATCAATAATTATCGATTCGTGCAATC 57.453 29.630 1.71 0.00 38.06 2.67
4548 5414 9.333497 CAATCAATAATTATCGATTCGTGCAAT 57.667 29.630 8.40 0.00 0.00 3.56
4549 5415 8.341903 ACAATCAATAATTATCGATTCGTGCAA 58.658 29.630 8.40 0.00 0.00 4.08
4550 5416 7.798052 CACAATCAATAATTATCGATTCGTGCA 59.202 33.333 18.30 0.00 0.00 4.57
4551 5417 8.009409 TCACAATCAATAATTATCGATTCGTGC 58.991 33.333 21.65 0.00 0.00 5.34
4552 5418 9.521179 CTCACAATCAATAATTATCGATTCGTG 57.479 33.333 21.08 21.08 0.00 4.35
4553 5419 8.223769 GCTCACAATCAATAATTATCGATTCGT 58.776 33.333 8.40 7.98 0.00 3.85
4554 5420 8.223100 TGCTCACAATCAATAATTATCGATTCG 58.777 33.333 8.40 0.00 0.00 3.34
4556 5422 9.836076 CATGCTCACAATCAATAATTATCGATT 57.164 29.630 1.71 5.91 0.00 3.34
4557 5423 8.456471 CCATGCTCACAATCAATAATTATCGAT 58.544 33.333 2.16 2.16 0.00 3.59
4558 5424 7.445096 ACCATGCTCACAATCAATAATTATCGA 59.555 33.333 0.00 0.00 0.00 3.59
4559 5425 7.536281 CACCATGCTCACAATCAATAATTATCG 59.464 37.037 0.00 0.00 0.00 2.92
4560 5426 7.327761 GCACCATGCTCACAATCAATAATTATC 59.672 37.037 0.00 0.00 40.96 1.75
4561 5427 7.149973 GCACCATGCTCACAATCAATAATTAT 58.850 34.615 0.00 0.00 40.96 1.28
4562 5428 6.096564 TGCACCATGCTCACAATCAATAATTA 59.903 34.615 2.02 0.00 45.31 1.40
4563 5429 5.105269 TGCACCATGCTCACAATCAATAATT 60.105 36.000 2.02 0.00 45.31 1.40
4564 5430 4.403113 TGCACCATGCTCACAATCAATAAT 59.597 37.500 2.02 0.00 45.31 1.28
4565 5431 3.762823 TGCACCATGCTCACAATCAATAA 59.237 39.130 2.02 0.00 45.31 1.40
4566 5432 3.129113 GTGCACCATGCTCACAATCAATA 59.871 43.478 5.22 0.00 45.31 1.90
4567 5433 2.094390 GTGCACCATGCTCACAATCAAT 60.094 45.455 5.22 0.00 45.31 2.57
4568 5434 1.270274 GTGCACCATGCTCACAATCAA 59.730 47.619 5.22 0.00 45.31 2.57
4569 5435 0.883153 GTGCACCATGCTCACAATCA 59.117 50.000 5.22 0.00 45.31 2.57
4570 5436 0.883153 TGTGCACCATGCTCACAATC 59.117 50.000 15.69 0.00 45.31 2.67
4571 5437 3.039452 TGTGCACCATGCTCACAAT 57.961 47.368 15.69 0.00 45.31 2.71
4572 5438 4.575180 TGTGCACCATGCTCACAA 57.425 50.000 15.69 0.00 45.31 3.33
4576 5442 4.836825 ACCTATATATGTGCACCATGCTC 58.163 43.478 15.69 0.00 45.31 4.26
4577 5443 4.916041 ACCTATATATGTGCACCATGCT 57.084 40.909 15.69 0.00 45.31 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.