Multiple sequence alignment - TraesCS6A01G244900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G244900 chr6A 100.000 3629 0 0 1 3629 456010566 456014194 0.000000e+00 6702
1 TraesCS6A01G244900 chr6B 92.730 3315 102 44 342 3612 505683829 505680610 0.000000e+00 4658
2 TraesCS6A01G244900 chr6B 87.908 306 12 11 10 315 505684274 505683994 1.610000e-88 337
3 TraesCS6A01G244900 chr6D 92.786 3202 72 53 1 3117 318452680 318455807 0.000000e+00 4486
4 TraesCS6A01G244900 chr6D 92.144 471 16 4 3176 3629 318455952 318456418 0.000000e+00 645
5 TraesCS6A01G244900 chr2D 89.286 1568 153 8 997 2561 518969244 518970799 0.000000e+00 1951
6 TraesCS6A01G244900 chr2A 89.003 1564 157 8 1001 2561 663146775 663145224 0.000000e+00 1921
7 TraesCS6A01G244900 chr2A 91.831 355 28 1 1225 1579 10979571 10979924 9.050000e-136 494
8 TraesCS6A01G244900 chr2B 88.132 1601 172 12 997 2588 611192213 611193804 0.000000e+00 1888
9 TraesCS6A01G244900 chr3A 76.879 692 134 23 1043 1718 617073452 617074133 5.720000e-98 368
10 TraesCS6A01G244900 chr3B 76.734 692 135 24 1043 1718 631048328 631049009 2.660000e-96 363
11 TraesCS6A01G244900 chr3D 76.445 692 125 25 1043 1718 474654761 474655430 1.250000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G244900 chr6A 456010566 456014194 3628 False 6702.0 6702 100.000 1 3629 1 chr6A.!!$F1 3628
1 TraesCS6A01G244900 chr6B 505680610 505684274 3664 True 2497.5 4658 90.319 10 3612 2 chr6B.!!$R1 3602
2 TraesCS6A01G244900 chr6D 318452680 318456418 3738 False 2565.5 4486 92.465 1 3629 2 chr6D.!!$F1 3628
3 TraesCS6A01G244900 chr2D 518969244 518970799 1555 False 1951.0 1951 89.286 997 2561 1 chr2D.!!$F1 1564
4 TraesCS6A01G244900 chr2A 663145224 663146775 1551 True 1921.0 1921 89.003 1001 2561 1 chr2A.!!$R1 1560
5 TraesCS6A01G244900 chr2B 611192213 611193804 1591 False 1888.0 1888 88.132 997 2588 1 chr2B.!!$F1 1591
6 TraesCS6A01G244900 chr3A 617073452 617074133 681 False 368.0 368 76.879 1043 1718 1 chr3A.!!$F1 675
7 TraesCS6A01G244900 chr3B 631048328 631049009 681 False 363.0 363 76.734 1043 1718 1 chr3B.!!$F1 675
8 TraesCS6A01G244900 chr3D 474654761 474655430 669 False 340.0 340 76.445 1043 1718 1 chr3D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 763 0.108756 GAGCCCGGTCACTAACACTC 60.109 60.0 0.0 0.0 0.0 3.51 F
795 995 0.179029 CCCATCGATAACCCACCACC 60.179 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2561 1.601162 GCCACGAACTTGTACGAGTCA 60.601 52.381 16.27 0.0 0.0 3.41 R
2672 2899 1.055849 TCCCTTCAACAGCTAGCACA 58.944 50.000 18.83 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.047627 AGCAAGCCCCAATTAACTAGTT 57.952 40.909 13.68 13.68 0.00 2.24
152 153 1.789054 CGGCGTTTATTGTTTCCGCTC 60.789 52.381 0.00 0.00 43.57 5.03
154 155 1.466866 GCGTTTATTGTTTCCGCTCCC 60.467 52.381 0.00 0.00 41.06 4.30
157 158 3.730662 CGTTTATTGTTTCCGCTCCCATG 60.731 47.826 0.00 0.00 0.00 3.66
158 159 1.388547 TATTGTTTCCGCTCCCATGC 58.611 50.000 0.00 0.00 0.00 4.06
159 160 0.611618 ATTGTTTCCGCTCCCATGCA 60.612 50.000 0.00 0.00 0.00 3.96
160 161 0.611618 TTGTTTCCGCTCCCATGCAT 60.612 50.000 0.00 0.00 0.00 3.96
161 162 1.031571 TGTTTCCGCTCCCATGCATC 61.032 55.000 0.00 0.00 0.00 3.91
162 163 1.819208 TTTCCGCTCCCATGCATCG 60.819 57.895 0.00 0.00 0.00 3.84
163 164 2.535485 TTTCCGCTCCCATGCATCGT 62.535 55.000 0.00 0.00 0.00 3.73
164 165 3.274586 CCGCTCCCATGCATCGTG 61.275 66.667 0.00 0.00 0.00 4.35
165 166 2.512286 CGCTCCCATGCATCGTGT 60.512 61.111 0.00 0.00 0.00 4.49
166 167 2.528743 CGCTCCCATGCATCGTGTC 61.529 63.158 0.00 0.00 0.00 3.67
167 168 2.182842 GCTCCCATGCATCGTGTCC 61.183 63.158 0.00 0.00 0.00 4.02
168 169 1.524621 CTCCCATGCATCGTGTCCC 60.525 63.158 0.00 0.00 0.00 4.46
169 170 2.256072 CTCCCATGCATCGTGTCCCA 62.256 60.000 0.00 0.00 0.00 4.37
170 171 1.820906 CCCATGCATCGTGTCCCAG 60.821 63.158 0.00 0.00 0.00 4.45
195 196 3.362797 CACAGCTGCAGTGCCCTG 61.363 66.667 23.59 23.59 41.91 4.45
219 229 1.252904 GCACTCCACCCATGCACAAT 61.253 55.000 0.00 0.00 39.23 2.71
335 364 2.093658 TCTCCATTTAAGCGTCTCCACC 60.094 50.000 0.00 0.00 0.00 4.61
550 723 2.674084 CGCCCCCGTTTCTTCGTTC 61.674 63.158 0.00 0.00 0.00 3.95
566 739 1.347320 GTTCGTTCATCGGTCCAGAC 58.653 55.000 0.00 0.00 40.32 3.51
567 740 1.067776 GTTCGTTCATCGGTCCAGACT 60.068 52.381 0.00 0.00 40.32 3.24
568 741 0.809385 TCGTTCATCGGTCCAGACTC 59.191 55.000 0.00 0.00 40.32 3.36
569 742 0.179134 CGTTCATCGGTCCAGACTCC 60.179 60.000 0.00 0.00 35.71 3.85
570 743 0.895530 GTTCATCGGTCCAGACTCCA 59.104 55.000 0.00 0.00 0.00 3.86
571 744 1.134965 GTTCATCGGTCCAGACTCCAG 60.135 57.143 0.00 0.00 0.00 3.86
572 745 0.331616 TCATCGGTCCAGACTCCAGA 59.668 55.000 0.00 0.00 0.00 3.86
587 760 1.541310 CCAGAGCCCGGTCACTAACA 61.541 60.000 0.00 0.00 0.00 2.41
588 761 0.389948 CAGAGCCCGGTCACTAACAC 60.390 60.000 0.00 0.00 0.00 3.32
589 762 0.542232 AGAGCCCGGTCACTAACACT 60.542 55.000 0.00 0.00 0.00 3.55
590 763 0.108756 GAGCCCGGTCACTAACACTC 60.109 60.000 0.00 0.00 0.00 3.51
591 764 0.830444 AGCCCGGTCACTAACACTCA 60.830 55.000 0.00 0.00 0.00 3.41
592 765 0.669625 GCCCGGTCACTAACACTCAC 60.670 60.000 0.00 0.00 0.00 3.51
593 766 0.966920 CCCGGTCACTAACACTCACT 59.033 55.000 0.00 0.00 0.00 3.41
622 796 7.064490 ACACACGCAAAGAAATGAAAAGAAAAT 59.936 29.630 0.00 0.00 0.00 1.82
641 815 6.490040 AGAAAATGAAAACACAAGGCTAGCTA 59.510 34.615 15.72 0.00 0.00 3.32
642 816 5.629079 AATGAAAACACAAGGCTAGCTAC 57.371 39.130 15.72 0.00 0.00 3.58
738 938 2.294512 GCTGGCAGGCTACCAATAAATC 59.705 50.000 17.64 0.00 36.56 2.17
795 995 0.179029 CCCATCGATAACCCACCACC 60.179 60.000 0.00 0.00 0.00 4.61
833 1033 4.247380 CCCTGCCATCCTCCTCGC 62.247 72.222 0.00 0.00 0.00 5.03
840 1040 1.299773 CATCCTCCTCGCTCGCTTC 60.300 63.158 0.00 0.00 0.00 3.86
896 1096 1.376037 AGCCAGCACCTTAACTCGC 60.376 57.895 0.00 0.00 0.00 5.03
968 1180 2.076628 CACGCGCGTACGTACACTT 61.077 57.895 37.24 5.61 46.34 3.16
989 1201 0.392729 CAGAGCTTGCTTCAGGGAGG 60.393 60.000 0.00 0.00 0.00 4.30
990 1202 0.839853 AGAGCTTGCTTCAGGGAGGT 60.840 55.000 0.00 0.00 0.00 3.85
991 1203 0.392327 GAGCTTGCTTCAGGGAGGTC 60.392 60.000 0.00 0.00 0.00 3.85
992 1204 1.130054 AGCTTGCTTCAGGGAGGTCA 61.130 55.000 0.00 0.00 0.00 4.02
1869 2096 2.267642 CGGTTCATGCGGAAGGGA 59.732 61.111 0.00 0.00 35.82 4.20
2199 2426 4.371417 TACCTCCCCGACGGCACT 62.371 66.667 8.86 0.00 0.00 4.40
2334 2561 1.580845 GCACCAAGTTCGAGCAGCAT 61.581 55.000 1.01 0.00 0.00 3.79
2634 2861 2.526120 GCCATGCGCGTAGAAGACC 61.526 63.158 8.43 0.00 0.00 3.85
2635 2862 1.141881 CCATGCGCGTAGAAGACCT 59.858 57.895 8.43 0.00 0.00 3.85
2636 2863 1.148157 CCATGCGCGTAGAAGACCTG 61.148 60.000 8.43 0.00 0.00 4.00
2637 2864 1.141881 ATGCGCGTAGAAGACCTGG 59.858 57.895 8.43 0.00 0.00 4.45
2638 2865 2.886124 GCGCGTAGAAGACCTGGC 60.886 66.667 8.43 0.00 0.00 4.85
2639 2866 2.571757 CGCGTAGAAGACCTGGCA 59.428 61.111 0.00 0.00 0.00 4.92
2672 2899 1.723273 CGCCATGCATGATTCGTGT 59.277 52.632 28.31 0.00 0.00 4.49
2868 3096 1.216710 GCCGGGGATCTGATCGATC 59.783 63.158 18.72 18.72 46.37 3.69
2871 3099 1.252175 CGGGGATCTGATCGATCTGT 58.748 55.000 25.02 14.94 46.33 3.41
2916 3144 1.283321 GGAGACCAAGGAGGAAAGCAT 59.717 52.381 0.00 0.00 41.22 3.79
2931 3159 8.523658 GGAGGAAAGCATAAAATAACAGAAACT 58.476 33.333 0.00 0.00 0.00 2.66
3149 3378 8.478877 CCTATCCATGAAACTTGTAAGTAGACT 58.521 37.037 0.00 0.00 38.57 3.24
3153 3382 7.041372 TCCATGAAACTTGTAAGTAGACTTTGC 60.041 37.037 0.00 0.00 38.57 3.68
3155 3384 7.246674 TGAAACTTGTAAGTAGACTTTGCAG 57.753 36.000 0.00 0.00 38.57 4.41
3156 3385 6.821665 TGAAACTTGTAAGTAGACTTTGCAGT 59.178 34.615 0.00 0.00 38.57 4.40
3157 3386 7.982919 TGAAACTTGTAAGTAGACTTTGCAGTA 59.017 33.333 0.00 0.00 38.57 2.74
3158 3387 7.948278 AACTTGTAAGTAGACTTTGCAGTAG 57.052 36.000 0.00 0.00 38.57 2.57
3163 3392 4.162096 AGTAGACTTTGCAGTAGACGTG 57.838 45.455 0.00 0.00 31.22 4.49
3189 3504 4.110036 AGGTTGTTTGCTTCTTTGACAC 57.890 40.909 0.00 0.00 0.00 3.67
3221 3536 7.939039 TCATCCATGACAAGTTTCTTCTTTAGT 59.061 33.333 0.00 0.00 0.00 2.24
3277 3592 1.065854 AGCTAGCTAACCTTGGTGCTG 60.066 52.381 17.69 6.22 37.02 4.41
3398 3714 3.003480 AGAATCTCAGGTGCGTAAAAGC 58.997 45.455 0.00 0.00 37.71 3.51
3399 3715 2.472695 ATCTCAGGTGCGTAAAAGCA 57.527 45.000 0.00 0.00 45.96 3.91
3448 3764 1.137479 ACATGCACATATTTGGCAGCC 59.863 47.619 3.66 3.66 41.40 4.85
3500 3816 4.486090 TGCACTCTCTCTAATTGTCGTTC 58.514 43.478 0.00 0.00 0.00 3.95
3621 3953 6.260050 TGATGCAACGATTTTAATCTACCTCC 59.740 38.462 0.00 0.00 33.24 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.050269 GGCTAAGCTCTGGCCGATA 58.950 57.895 0.00 0.00 39.73 2.92
139 140 1.340502 TGCATGGGAGCGGAAACAATA 60.341 47.619 0.00 0.00 37.31 1.90
152 153 1.820906 CTGGGACACGATGCATGGG 60.821 63.158 13.62 5.32 0.00 4.00
154 155 1.450848 AGCTGGGACACGATGCATG 60.451 57.895 2.46 0.00 0.00 4.06
157 158 3.503363 GCAGCTGGGACACGATGC 61.503 66.667 17.12 0.00 40.25 3.91
158 159 1.450848 ATGCAGCTGGGACACGATG 60.451 57.895 17.12 0.00 0.00 3.84
159 160 1.450848 CATGCAGCTGGGACACGAT 60.451 57.895 17.12 0.00 0.00 3.73
160 161 2.046988 CATGCAGCTGGGACACGA 60.047 61.111 17.12 0.00 0.00 4.35
161 162 3.807538 GCATGCAGCTGGGACACG 61.808 66.667 17.12 0.00 41.15 4.49
162 163 2.674033 TGCATGCAGCTGGGACAC 60.674 61.111 18.46 0.00 45.94 3.67
163 164 2.674033 GTGCATGCAGCTGGGACA 60.674 61.111 23.41 5.30 45.94 4.02
164 165 2.674033 TGTGCATGCAGCTGGGAC 60.674 61.111 23.41 10.88 45.94 4.46
165 166 2.360726 CTGTGCATGCAGCTGGGA 60.361 61.111 23.41 0.00 45.94 4.37
190 191 4.783621 TGGAGTGCGATGCAGGGC 62.784 66.667 4.90 4.90 40.08 5.19
191 192 2.821366 GTGGAGTGCGATGCAGGG 60.821 66.667 0.00 0.00 40.08 4.45
192 193 2.821366 GGTGGAGTGCGATGCAGG 60.821 66.667 0.00 0.00 40.08 4.85
193 194 2.821366 GGGTGGAGTGCGATGCAG 60.821 66.667 0.00 0.00 40.08 4.41
194 195 2.970379 ATGGGTGGAGTGCGATGCA 61.970 57.895 0.00 0.00 35.60 3.96
195 196 2.124570 ATGGGTGGAGTGCGATGC 60.125 61.111 0.00 0.00 0.00 3.91
196 197 2.475466 GCATGGGTGGAGTGCGATG 61.475 63.158 0.00 0.00 0.00 3.84
197 198 2.124570 GCATGGGTGGAGTGCGAT 60.125 61.111 0.00 0.00 0.00 4.58
198 199 3.635191 TGCATGGGTGGAGTGCGA 61.635 61.111 0.00 0.00 41.61 5.10
199 200 3.434319 GTGCATGGGTGGAGTGCG 61.434 66.667 0.00 0.00 41.61 5.34
435 598 2.749441 GGAGAACCAGCCAGCAGC 60.749 66.667 0.00 0.00 44.25 5.25
436 599 0.251077 AAAGGAGAACCAGCCAGCAG 60.251 55.000 0.00 0.00 38.94 4.24
437 600 0.538057 CAAAGGAGAACCAGCCAGCA 60.538 55.000 0.00 0.00 38.94 4.41
439 602 0.251077 AGCAAAGGAGAACCAGCCAG 60.251 55.000 0.00 0.00 38.94 4.85
440 603 0.185901 AAGCAAAGGAGAACCAGCCA 59.814 50.000 0.00 0.00 38.94 4.75
441 604 0.600057 CAAGCAAAGGAGAACCAGCC 59.400 55.000 0.00 0.00 38.94 4.85
442 605 0.600057 CCAAGCAAAGGAGAACCAGC 59.400 55.000 0.00 0.00 38.94 4.85
443 606 1.251251 CCCAAGCAAAGGAGAACCAG 58.749 55.000 0.00 0.00 38.94 4.00
444 607 0.827507 GCCCAAGCAAAGGAGAACCA 60.828 55.000 0.00 0.00 39.53 3.67
445 608 1.536073 GGCCCAAGCAAAGGAGAACC 61.536 60.000 0.00 0.00 42.56 3.62
446 609 0.827507 TGGCCCAAGCAAAGGAGAAC 60.828 55.000 0.00 0.00 42.56 3.01
550 723 0.179134 GGAGTCTGGACCGATGAACG 60.179 60.000 0.00 0.00 42.18 3.95
566 739 0.970937 TTAGTGACCGGGCTCTGGAG 60.971 60.000 22.26 0.00 0.00 3.86
567 740 1.077805 TTAGTGACCGGGCTCTGGA 59.922 57.895 22.26 7.63 0.00 3.86
568 741 1.218316 GTTAGTGACCGGGCTCTGG 59.782 63.158 22.26 0.00 0.00 3.86
569 742 0.389948 GTGTTAGTGACCGGGCTCTG 60.390 60.000 22.26 0.00 0.00 3.35
570 743 0.542232 AGTGTTAGTGACCGGGCTCT 60.542 55.000 17.53 17.53 0.00 4.09
571 744 0.108756 GAGTGTTAGTGACCGGGCTC 60.109 60.000 9.82 4.47 0.00 4.70
572 745 0.830444 TGAGTGTTAGTGACCGGGCT 60.830 55.000 9.82 4.59 0.00 5.19
587 760 2.159156 TCTTTGCGTGTGTGTAGTGAGT 60.159 45.455 0.00 0.00 0.00 3.41
588 761 2.469826 TCTTTGCGTGTGTGTAGTGAG 58.530 47.619 0.00 0.00 0.00 3.51
589 762 2.588027 TCTTTGCGTGTGTGTAGTGA 57.412 45.000 0.00 0.00 0.00 3.41
590 763 3.666883 TTTCTTTGCGTGTGTGTAGTG 57.333 42.857 0.00 0.00 0.00 2.74
591 764 3.874543 TCATTTCTTTGCGTGTGTGTAGT 59.125 39.130 0.00 0.00 0.00 2.73
592 765 4.466567 TCATTTCTTTGCGTGTGTGTAG 57.533 40.909 0.00 0.00 0.00 2.74
593 766 4.884458 TTCATTTCTTTGCGTGTGTGTA 57.116 36.364 0.00 0.00 0.00 2.90
622 796 3.072476 AGGTAGCTAGCCTTGTGTTTTCA 59.928 43.478 19.06 0.00 31.04 2.69
738 938 1.675310 TTGGTTGAGATGGCTGGCG 60.675 57.895 0.00 0.00 0.00 5.69
795 995 4.839550 GGGGGAGACTAGGGTTTTATAGAG 59.160 50.000 0.00 0.00 0.00 2.43
833 1033 1.900351 TCCACATGGAGGAAGCGAG 59.100 57.895 6.68 0.00 39.78 5.03
946 1146 0.647925 TGTACGTACGCGCGTGTATA 59.352 50.000 42.78 30.29 45.33 1.47
989 1201 2.825836 CCTCCATTGCCGGCTGAC 60.826 66.667 29.70 0.00 0.00 3.51
990 1202 3.329889 ACCTCCATTGCCGGCTGA 61.330 61.111 29.70 17.07 0.00 4.26
991 1203 3.136123 CACCTCCATTGCCGGCTG 61.136 66.667 29.70 18.72 0.00 4.85
992 1204 4.431131 CCACCTCCATTGCCGGCT 62.431 66.667 29.70 4.80 0.00 5.52
2050 2277 2.360350 CTCCGCCAGCCACAATGT 60.360 61.111 0.00 0.00 0.00 2.71
2334 2561 1.601162 GCCACGAACTTGTACGAGTCA 60.601 52.381 16.27 0.00 0.00 3.41
2619 2846 1.141881 CCAGGTCTTCTACGCGCAT 59.858 57.895 5.73 0.00 0.00 4.73
2672 2899 1.055849 TCCCTTCAACAGCTAGCACA 58.944 50.000 18.83 0.00 0.00 4.57
2770 2997 6.347725 CGTAAATTCTGGAAAGGAGTGACTTG 60.348 42.308 0.00 0.00 0.00 3.16
2913 3141 7.483059 GCTCACTCAGTTTCTGTTATTTTATGC 59.517 37.037 0.00 0.00 32.61 3.14
2916 3144 8.445275 TTGCTCACTCAGTTTCTGTTATTTTA 57.555 30.769 0.00 0.00 32.61 1.52
2931 3159 6.822667 ACAATCACAAATATTGCTCACTCA 57.177 33.333 0.00 0.00 37.77 3.41
3124 3353 9.877178 AAGTCTACTTACAAGTTTCATGGATAG 57.123 33.333 0.00 0.00 40.37 2.08
3131 3360 6.821665 ACTGCAAAGTCTACTTACAAGTTTCA 59.178 34.615 0.00 0.00 40.37 2.69
3149 3378 2.135139 CTTGAGCACGTCTACTGCAAA 58.865 47.619 0.00 0.00 37.08 3.68
3151 3380 0.038251 CCTTGAGCACGTCTACTGCA 60.038 55.000 0.00 0.00 37.08 4.41
3153 3382 2.061773 CAACCTTGAGCACGTCTACTG 58.938 52.381 0.00 0.00 0.00 2.74
3155 3384 2.150397 ACAACCTTGAGCACGTCTAC 57.850 50.000 0.00 0.00 0.00 2.59
3156 3385 2.869801 CAAACAACCTTGAGCACGTCTA 59.130 45.455 0.00 0.00 0.00 2.59
3157 3386 1.670811 CAAACAACCTTGAGCACGTCT 59.329 47.619 0.00 0.00 0.00 4.18
3158 3387 1.859998 GCAAACAACCTTGAGCACGTC 60.860 52.381 0.00 0.00 0.00 4.34
3163 3392 3.443099 AAGAAGCAAACAACCTTGAGC 57.557 42.857 0.00 0.00 0.00 4.26
3189 3504 5.184479 AGAAACTTGTCATGGATGAACATGG 59.816 40.000 0.00 0.00 46.33 3.66
3221 3536 0.894835 TACTGCAGCGAATCAGACCA 59.105 50.000 15.27 0.00 34.57 4.02
3267 3582 0.395311 ATGCAGATCCAGCACCAAGG 60.395 55.000 12.11 0.00 45.95 3.61
3277 3592 1.520494 ATGTCATCGCATGCAGATCC 58.480 50.000 19.57 13.15 0.00 3.36
3398 3714 2.165030 GGAGCCATCCACATCAAACTTG 59.835 50.000 0.00 0.00 45.87 3.16
3399 3715 2.450476 GGAGCCATCCACATCAAACTT 58.550 47.619 0.00 0.00 45.87 2.66
3400 3716 2.134789 GGAGCCATCCACATCAAACT 57.865 50.000 0.00 0.00 45.87 2.66
3448 3764 1.447489 CTGCAGGCCAGAGAGAACG 60.447 63.158 5.01 0.00 44.64 3.95
3500 3816 1.772182 GATCCCATCGCTGTCGTAAG 58.228 55.000 0.00 0.00 36.96 2.34
3564 3896 1.791103 ATGCCAACAAACACCCGTCG 61.791 55.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.