Multiple sequence alignment - TraesCS6A01G244600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G244600 chr6A 100.000 5289 0 0 1 5289 455935707 455940995 0.000000e+00 9768.0
1 TraesCS6A01G244600 chr6D 94.692 3071 131 17 2232 5289 318346680 318349731 0.000000e+00 4739.0
2 TraesCS6A01G244600 chr6D 95.212 1295 48 7 837 2120 318345384 318346675 0.000000e+00 2036.0
3 TraesCS6A01G244600 chr6D 96.774 31 1 0 2121 2151 313153040 313153070 1.000000e-02 52.8
4 TraesCS6A01G244600 chr6B 94.414 3079 130 18 2232 5289 505802618 505799561 0.000000e+00 4695.0
5 TraesCS6A01G244600 chr6B 95.879 1189 38 6 846 2030 505803926 505802745 0.000000e+00 1914.0
6 TraesCS6A01G244600 chr6B 96.226 106 4 0 2015 2120 505802728 505802623 1.960000e-39 174.0
7 TraesCS6A01G244600 chr6B 91.304 46 4 0 2075 2120 149484523 149484478 4.420000e-06 63.9
8 TraesCS6A01G244600 chr7B 91.713 543 42 3 285 826 111414074 111413534 0.000000e+00 750.0
9 TraesCS6A01G244600 chr7B 84.123 422 61 6 4820 5238 382521062 382520644 2.290000e-108 403.0
10 TraesCS6A01G244600 chr7B 96.875 32 0 1 2121 2151 328668061 328668092 1.000000e-02 52.8
11 TraesCS6A01G244600 chr7A 84.598 435 61 6 4820 5251 437610771 437610340 1.360000e-115 427.0
12 TraesCS6A01G244600 chr7A 78.723 94 13 4 2684 2777 176419734 176419648 7.400000e-04 56.5
13 TraesCS6A01G244600 chr7D 83.678 435 65 6 4820 5251 387496143 387495712 6.380000e-109 405.0
14 TraesCS6A01G244600 chr1D 81.724 290 34 8 2212 2500 482900114 482899843 1.920000e-54 224.0
15 TraesCS6A01G244600 chr1D 96.774 31 1 0 2121 2151 247514079 247514109 1.000000e-02 52.8
16 TraesCS6A01G244600 chr2A 84.916 179 20 4 2347 2519 298635236 298635059 1.960000e-39 174.0
17 TraesCS6A01G244600 chr2A 95.122 41 1 1 2079 2119 733514172 733514133 4.420000e-06 63.9
18 TraesCS6A01G244600 chr2A 81.944 72 6 3 2642 2706 11618448 11618519 3.000000e-03 54.7
19 TraesCS6A01G244600 chr5D 84.932 146 12 5 2649 2785 498720097 498720241 7.140000e-29 139.0
20 TraesCS6A01G244600 chr5D 79.213 178 21 9 2618 2783 498660546 498660719 5.600000e-20 110.0
21 TraesCS6A01G244600 chr5D 93.220 59 4 0 4593 4651 68894228 68894170 2.620000e-13 87.9
22 TraesCS6A01G244600 chr5D 100.000 28 0 0 2124 2151 104396685 104396712 1.000000e-02 52.8
23 TraesCS6A01G244600 chr3D 80.729 192 24 7 2609 2790 314620248 314620060 2.570000e-28 137.0
24 TraesCS6A01G244600 chr3D 97.222 36 1 0 2743 2778 610196889 610196924 1.590000e-05 62.1
25 TraesCS6A01G244600 chr5A 83.562 146 14 5 2649 2785 623016826 623016970 1.550000e-25 128.0
26 TraesCS6A01G244600 chr5A 91.045 67 6 0 4589 4655 428155581 428155515 2.030000e-14 91.6
27 TraesCS6A01G244600 chr4A 80.000 185 28 6 2609 2786 713895271 713895089 1.550000e-25 128.0
28 TraesCS6A01G244600 chr4A 90.625 64 6 0 4593 4656 444860241 444860304 9.440000e-13 86.1
29 TraesCS6A01G244600 chr3A 96.429 56 2 0 4589 4644 383691026 383691081 5.640000e-15 93.5
30 TraesCS6A01G244600 chr4B 92.188 64 5 0 4593 4656 189421857 189421794 2.030000e-14 91.6
31 TraesCS6A01G244600 chr3B 94.643 56 2 1 4589 4644 383704423 383704477 9.440000e-13 86.1
32 TraesCS6A01G244600 chr3B 95.000 40 0 2 2075 2113 661201373 661201335 1.590000e-05 62.1
33 TraesCS6A01G244600 chr2B 89.394 66 5 2 4589 4652 260758157 260758222 1.220000e-11 82.4
34 TraesCS6A01G244600 chr5B 95.556 45 2 0 2743 2787 622039011 622039055 7.350000e-09 73.1
35 TraesCS6A01G244600 chr5B 100.000 28 0 0 2124 2151 113804057 113804084 1.000000e-02 52.8
36 TraesCS6A01G244600 chr2D 97.436 39 1 0 2082 2120 320284856 320284894 3.420000e-07 67.6
37 TraesCS6A01G244600 chr2D 100.000 28 0 0 2679 2706 10913668 10913695 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G244600 chr6A 455935707 455940995 5288 False 9768.0 9768 100.000000 1 5289 1 chr6A.!!$F1 5288
1 TraesCS6A01G244600 chr6D 318345384 318349731 4347 False 3387.5 4739 94.952000 837 5289 2 chr6D.!!$F2 4452
2 TraesCS6A01G244600 chr6B 505799561 505803926 4365 True 2261.0 4695 95.506333 846 5289 3 chr6B.!!$R2 4443
3 TraesCS6A01G244600 chr7B 111413534 111414074 540 True 750.0 750 91.713000 285 826 1 chr7B.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.029300 CACAAAGTGTGCGGTTCCTG 59.971 55.0 0.00 0.0 41.89 3.86 F
516 517 0.097674 GATTGCTTGCGCGACTGATT 59.902 50.0 12.10 0.0 39.65 2.57 F
706 708 0.108089 GAAGGACCTCGGCTTTCCTC 60.108 60.0 0.00 0.0 38.93 3.71 F
829 831 0.540365 CCCCTTGTGTGGTTGCAGAT 60.540 55.0 0.00 0.0 0.00 2.90 F
2626 2670 0.929824 CAAGGTGCACACGCTTTTCG 60.930 55.0 20.43 0.0 45.38 3.46 F
2797 2841 0.320858 TCGAAAAGTATGCACGCCCA 60.321 50.0 0.00 0.0 0.00 5.36 F
2802 2846 0.881118 AAGTATGCACGCCCACTTTG 59.119 50.0 0.00 0.0 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1555 0.037232 GGCTACAAAGTCTCGGCAGT 60.037 55.000 0.00 0.00 0.00 4.40 R
2129 2172 0.978907 GTTTTACTCCCTCCGTCCCA 59.021 55.000 0.00 0.00 0.00 4.37 R
2607 2651 0.929824 CGAAAAGCGTGTGCACCTTG 60.930 55.000 15.69 4.98 46.23 3.61 R
2797 2841 1.421646 CTCCCTCCAACTCCACAAAGT 59.578 52.381 0.00 0.00 0.00 2.66 R
3827 3872 1.165270 CACCACCGAAGAATGTTCCC 58.835 55.000 0.00 0.00 0.00 3.97 R
4096 4146 1.532868 CACCAACAGCTTGCACTCTAC 59.467 52.381 0.00 0.00 0.00 2.59 R
4671 4734 2.339728 TGCGCAAAATTAAACCGAGG 57.660 45.000 8.16 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.799564 GGTTCATCAGTTCAGAGACTCT 57.200 45.455 0.00 0.00 0.00 3.24
22 23 4.493547 GGTTCATCAGTTCAGAGACTCTG 58.506 47.826 24.13 24.13 45.59 3.35
23 24 4.021544 GGTTCATCAGTTCAGAGACTCTGT 60.022 45.833 27.62 9.94 44.58 3.41
24 25 5.160641 GTTCATCAGTTCAGAGACTCTGTC 58.839 45.833 27.62 21.45 44.58 3.51
25 26 4.401925 TCATCAGTTCAGAGACTCTGTCA 58.598 43.478 27.62 15.55 44.58 3.58
26 27 4.829492 TCATCAGTTCAGAGACTCTGTCAA 59.171 41.667 27.62 15.59 44.58 3.18
27 28 4.844998 TCAGTTCAGAGACTCTGTCAAG 57.155 45.455 27.62 17.73 44.58 3.02
28 29 3.005261 TCAGTTCAGAGACTCTGTCAAGC 59.995 47.826 27.62 13.72 44.58 4.01
29 30 2.961741 AGTTCAGAGACTCTGTCAAGCA 59.038 45.455 27.62 8.55 44.58 3.91
30 31 3.005684 AGTTCAGAGACTCTGTCAAGCAG 59.994 47.826 27.62 4.32 44.58 4.24
31 32 1.271934 TCAGAGACTCTGTCAAGCAGC 59.728 52.381 27.62 0.00 44.58 5.25
32 33 1.000618 CAGAGACTCTGTCAAGCAGCA 59.999 52.381 22.23 0.00 44.66 4.41
33 34 1.000731 AGAGACTCTGTCAAGCAGCAC 59.999 52.381 3.56 0.00 44.66 4.40
34 35 0.034616 AGACTCTGTCAAGCAGCACC 59.965 55.000 0.00 0.00 44.66 5.01
35 36 0.952984 GACTCTGTCAAGCAGCACCC 60.953 60.000 0.00 0.00 44.66 4.61
36 37 1.673665 CTCTGTCAAGCAGCACCCC 60.674 63.158 0.00 0.00 44.66 4.95
37 38 2.121992 CTCTGTCAAGCAGCACCCCT 62.122 60.000 0.00 0.00 44.66 4.79
38 39 1.970114 CTGTCAAGCAGCACCCCTG 60.970 63.158 0.00 0.00 44.67 4.45
61 62 4.064768 TTCGTCCGGGGCCTCCTA 62.065 66.667 0.84 0.00 0.00 2.94
62 63 4.517934 TCGTCCGGGGCCTCCTAG 62.518 72.222 0.84 0.00 0.00 3.02
63 64 4.835891 CGTCCGGGGCCTCCTAGT 62.836 72.222 0.84 0.00 0.00 2.57
64 65 3.155167 GTCCGGGGCCTCCTAGTG 61.155 72.222 0.84 0.00 0.00 2.74
67 68 3.541713 CGGGGCCTCCTAGTGCTC 61.542 72.222 0.84 0.00 0.00 4.26
68 69 3.164977 GGGGCCTCCTAGTGCTCC 61.165 72.222 0.84 0.00 41.79 4.70
69 70 3.164977 GGGCCTCCTAGTGCTCCC 61.165 72.222 0.84 0.00 0.00 4.30
70 71 2.041405 GGCCTCCTAGTGCTCCCT 60.041 66.667 0.00 0.00 0.00 4.20
71 72 2.137528 GGCCTCCTAGTGCTCCCTC 61.138 68.421 0.00 0.00 0.00 4.30
72 73 2.494530 GCCTCCTAGTGCTCCCTCG 61.495 68.421 0.00 0.00 0.00 4.63
73 74 1.830408 CCTCCTAGTGCTCCCTCGG 60.830 68.421 0.00 0.00 0.00 4.63
74 75 1.830408 CTCCTAGTGCTCCCTCGGG 60.830 68.421 0.00 0.00 0.00 5.14
75 76 2.840102 CCTAGTGCTCCCTCGGGG 60.840 72.222 0.00 0.00 46.11 5.73
76 77 3.541713 CTAGTGCTCCCTCGGGGC 61.542 72.222 0.00 5.41 43.94 5.80
77 78 4.392166 TAGTGCTCCCTCGGGGCA 62.392 66.667 0.00 0.00 43.94 5.36
89 90 4.147587 GGGGCAGCCATGGGTCAT 62.148 66.667 15.07 0.00 0.00 3.06
90 91 2.520260 GGGCAGCCATGGGTCATC 60.520 66.667 15.07 6.15 0.00 2.92
91 92 2.520260 GGCAGCCATGGGTCATCC 60.520 66.667 15.07 11.83 0.00 3.51
103 104 1.255882 GGTCATCCCAAATGCACACA 58.744 50.000 0.00 0.00 0.00 3.72
104 105 1.826720 GGTCATCCCAAATGCACACAT 59.173 47.619 0.00 0.00 38.49 3.21
106 107 3.255725 GTCATCCCAAATGCACACATTG 58.744 45.455 0.00 0.00 45.90 2.82
107 108 2.898612 TCATCCCAAATGCACACATTGT 59.101 40.909 0.00 0.00 45.90 2.71
108 109 3.056678 TCATCCCAAATGCACACATTGTC 60.057 43.478 0.00 0.00 45.90 3.18
109 110 1.617850 TCCCAAATGCACACATTGTCC 59.382 47.619 0.00 0.00 45.90 4.02
110 111 1.338011 CCCAAATGCACACATTGTCCC 60.338 52.381 0.00 0.00 45.90 4.46
111 112 1.338011 CCAAATGCACACATTGTCCCC 60.338 52.381 0.00 0.00 45.90 4.81
112 113 0.975887 AAATGCACACATTGTCCCCC 59.024 50.000 0.00 0.00 45.90 5.40
113 114 1.250154 AATGCACACATTGTCCCCCG 61.250 55.000 0.00 0.00 44.90 5.73
114 115 2.282180 GCACACATTGTCCCCCGT 60.282 61.111 0.00 0.00 0.00 5.28
115 116 1.003112 GCACACATTGTCCCCCGTA 60.003 57.895 0.00 0.00 0.00 4.02
116 117 1.303091 GCACACATTGTCCCCCGTAC 61.303 60.000 0.00 0.00 0.00 3.67
117 118 0.675522 CACACATTGTCCCCCGTACC 60.676 60.000 0.00 0.00 0.00 3.34
118 119 1.128809 ACACATTGTCCCCCGTACCA 61.129 55.000 0.00 0.00 0.00 3.25
119 120 0.037017 CACATTGTCCCCCGTACCAA 59.963 55.000 0.00 0.00 0.00 3.67
120 121 0.996583 ACATTGTCCCCCGTACCAAT 59.003 50.000 0.00 0.00 0.00 3.16
121 122 1.064979 ACATTGTCCCCCGTACCAATC 60.065 52.381 0.00 0.00 0.00 2.67
122 123 0.549469 ATTGTCCCCCGTACCAATCC 59.451 55.000 0.00 0.00 0.00 3.01
123 124 0.548197 TTGTCCCCCGTACCAATCCT 60.548 55.000 0.00 0.00 0.00 3.24
124 125 0.979187 TGTCCCCCGTACCAATCCTC 60.979 60.000 0.00 0.00 0.00 3.71
125 126 1.383525 TCCCCCGTACCAATCCTCC 60.384 63.158 0.00 0.00 0.00 4.30
126 127 1.691337 CCCCCGTACCAATCCTCCA 60.691 63.158 0.00 0.00 0.00 3.86
127 128 1.525442 CCCCGTACCAATCCTCCAC 59.475 63.158 0.00 0.00 0.00 4.02
128 129 1.268992 CCCCGTACCAATCCTCCACA 61.269 60.000 0.00 0.00 0.00 4.17
129 130 0.107848 CCCGTACCAATCCTCCACAC 60.108 60.000 0.00 0.00 0.00 3.82
130 131 0.902531 CCGTACCAATCCTCCACACT 59.097 55.000 0.00 0.00 0.00 3.55
131 132 2.104967 CCGTACCAATCCTCCACACTA 58.895 52.381 0.00 0.00 0.00 2.74
132 133 2.698797 CCGTACCAATCCTCCACACTAT 59.301 50.000 0.00 0.00 0.00 2.12
133 134 3.893200 CCGTACCAATCCTCCACACTATA 59.107 47.826 0.00 0.00 0.00 1.31
134 135 4.261909 CCGTACCAATCCTCCACACTATAC 60.262 50.000 0.00 0.00 0.00 1.47
135 136 4.261909 CGTACCAATCCTCCACACTATACC 60.262 50.000 0.00 0.00 0.00 2.73
136 137 4.008916 ACCAATCCTCCACACTATACCT 57.991 45.455 0.00 0.00 0.00 3.08
137 138 4.371681 ACCAATCCTCCACACTATACCTT 58.628 43.478 0.00 0.00 0.00 3.50
138 139 4.164221 ACCAATCCTCCACACTATACCTTG 59.836 45.833 0.00 0.00 0.00 3.61
139 140 4.130118 CAATCCTCCACACTATACCTTGC 58.870 47.826 0.00 0.00 0.00 4.01
140 141 3.116096 TCCTCCACACTATACCTTGCT 57.884 47.619 0.00 0.00 0.00 3.91
141 142 3.450904 TCCTCCACACTATACCTTGCTT 58.549 45.455 0.00 0.00 0.00 3.91
142 143 4.616553 TCCTCCACACTATACCTTGCTTA 58.383 43.478 0.00 0.00 0.00 3.09
143 144 5.027460 TCCTCCACACTATACCTTGCTTAA 58.973 41.667 0.00 0.00 0.00 1.85
144 145 5.128827 TCCTCCACACTATACCTTGCTTAAG 59.871 44.000 0.00 0.00 0.00 1.85
145 146 5.104900 CCTCCACACTATACCTTGCTTAAGT 60.105 44.000 4.02 0.00 0.00 2.24
146 147 6.097839 CCTCCACACTATACCTTGCTTAAGTA 59.902 42.308 4.02 0.00 0.00 2.24
147 148 7.364408 CCTCCACACTATACCTTGCTTAAGTAA 60.364 40.741 5.84 5.84 0.00 2.24
148 149 7.909518 TCCACACTATACCTTGCTTAAGTAAA 58.090 34.615 7.43 0.63 0.00 2.01
149 150 8.545472 TCCACACTATACCTTGCTTAAGTAAAT 58.455 33.333 7.43 1.48 0.00 1.40
150 151 8.827677 CCACACTATACCTTGCTTAAGTAAATC 58.172 37.037 7.43 0.00 0.00 2.17
151 152 9.378551 CACACTATACCTTGCTTAAGTAAATCA 57.621 33.333 7.43 0.00 0.00 2.57
152 153 9.953565 ACACTATACCTTGCTTAAGTAAATCAA 57.046 29.630 7.43 0.53 0.00 2.57
158 159 8.879427 ACCTTGCTTAAGTAAATCAATACCTT 57.121 30.769 7.43 0.00 0.00 3.50
159 160 9.309224 ACCTTGCTTAAGTAAATCAATACCTTT 57.691 29.630 7.43 0.00 0.00 3.11
160 161 9.788960 CCTTGCTTAAGTAAATCAATACCTTTC 57.211 33.333 7.43 0.00 0.00 2.62
163 164 8.447833 TGCTTAAGTAAATCAATACCTTTCACG 58.552 33.333 4.02 0.00 0.00 4.35
164 165 8.662141 GCTTAAGTAAATCAATACCTTTCACGA 58.338 33.333 4.02 0.00 0.00 4.35
168 169 9.886132 AAGTAAATCAATACCTTTCACGATACT 57.114 29.630 0.00 0.00 0.00 2.12
169 170 9.886132 AGTAAATCAATACCTTTCACGATACTT 57.114 29.630 0.00 0.00 0.00 2.24
172 173 8.649973 AATCAATACCTTTCACGATACTTCTC 57.350 34.615 0.00 0.00 0.00 2.87
173 174 6.570692 TCAATACCTTTCACGATACTTCTCC 58.429 40.000 0.00 0.00 0.00 3.71
174 175 6.153851 TCAATACCTTTCACGATACTTCTCCA 59.846 38.462 0.00 0.00 0.00 3.86
175 176 4.189639 ACCTTTCACGATACTTCTCCAC 57.810 45.455 0.00 0.00 0.00 4.02
176 177 3.179830 CCTTTCACGATACTTCTCCACG 58.820 50.000 0.00 0.00 0.00 4.94
177 178 3.367087 CCTTTCACGATACTTCTCCACGT 60.367 47.826 0.00 0.00 37.68 4.49
178 179 4.142534 CCTTTCACGATACTTCTCCACGTA 60.143 45.833 0.00 0.00 35.78 3.57
179 180 5.450137 CCTTTCACGATACTTCTCCACGTAT 60.450 44.000 0.00 0.00 35.78 3.06
180 181 6.238566 CCTTTCACGATACTTCTCCACGTATA 60.239 42.308 0.00 0.00 35.78 1.47
181 182 6.872628 TTCACGATACTTCTCCACGTATAT 57.127 37.500 0.00 0.00 35.78 0.86
182 183 6.237313 TCACGATACTTCTCCACGTATATG 57.763 41.667 0.00 0.00 35.78 1.78
183 184 5.993441 TCACGATACTTCTCCACGTATATGA 59.007 40.000 0.00 0.00 35.78 2.15
184 185 6.073385 TCACGATACTTCTCCACGTATATGAC 60.073 42.308 0.00 0.00 35.78 3.06
185 186 5.761726 ACGATACTTCTCCACGTATATGACA 59.238 40.000 0.00 0.00 35.49 3.58
186 187 6.430308 ACGATACTTCTCCACGTATATGACAT 59.570 38.462 0.00 0.00 35.49 3.06
187 188 7.605309 ACGATACTTCTCCACGTATATGACATA 59.395 37.037 0.00 0.00 35.49 2.29
188 189 8.613482 CGATACTTCTCCACGTATATGACATAT 58.387 37.037 12.51 12.51 0.00 1.78
189 190 9.938670 GATACTTCTCCACGTATATGACATATC 57.061 37.037 11.28 3.62 0.00 1.63
190 191 9.688091 ATACTTCTCCACGTATATGACATATCT 57.312 33.333 11.28 0.00 0.00 1.98
191 192 8.046294 ACTTCTCCACGTATATGACATATCTC 57.954 38.462 11.28 5.99 0.00 2.75
192 193 7.885922 ACTTCTCCACGTATATGACATATCTCT 59.114 37.037 11.28 0.00 0.00 3.10
193 194 8.637196 TTCTCCACGTATATGACATATCTCTT 57.363 34.615 11.28 0.00 0.00 2.85
194 195 8.270080 TCTCCACGTATATGACATATCTCTTC 57.730 38.462 11.28 0.00 0.00 2.87
195 196 7.337184 TCTCCACGTATATGACATATCTCTTCC 59.663 40.741 11.28 0.00 0.00 3.46
196 197 6.093633 TCCACGTATATGACATATCTCTTCCG 59.906 42.308 11.28 8.11 0.00 4.30
197 198 5.739630 CACGTATATGACATATCTCTTCCGC 59.260 44.000 11.28 0.00 0.00 5.54
198 199 5.648526 ACGTATATGACATATCTCTTCCGCT 59.351 40.000 11.28 0.00 0.00 5.52
199 200 6.822170 ACGTATATGACATATCTCTTCCGCTA 59.178 38.462 11.28 0.00 0.00 4.26
200 201 7.127042 CGTATATGACATATCTCTTCCGCTAC 58.873 42.308 11.28 0.34 0.00 3.58
201 202 7.201617 CGTATATGACATATCTCTTCCGCTACA 60.202 40.741 11.28 0.00 0.00 2.74
202 203 5.991933 ATGACATATCTCTTCCGCTACAT 57.008 39.130 0.00 0.00 0.00 2.29
203 204 5.126396 TGACATATCTCTTCCGCTACATG 57.874 43.478 0.00 0.00 0.00 3.21
204 205 3.919216 ACATATCTCTTCCGCTACATGC 58.081 45.455 0.00 0.00 38.57 4.06
205 206 3.257393 CATATCTCTTCCGCTACATGCC 58.743 50.000 0.00 0.00 38.78 4.40
206 207 1.418334 ATCTCTTCCGCTACATGCCT 58.582 50.000 0.00 0.00 38.78 4.75
207 208 1.195115 TCTCTTCCGCTACATGCCTT 58.805 50.000 0.00 0.00 38.78 4.35
208 209 1.555075 TCTCTTCCGCTACATGCCTTT 59.445 47.619 0.00 0.00 38.78 3.11
209 210 2.764010 TCTCTTCCGCTACATGCCTTTA 59.236 45.455 0.00 0.00 38.78 1.85
210 211 3.126831 CTCTTCCGCTACATGCCTTTAG 58.873 50.000 0.00 0.00 38.78 1.85
211 212 1.599542 CTTCCGCTACATGCCTTTAGC 59.400 52.381 0.00 0.00 44.14 3.09
230 231 4.821589 CCGAGCAGTCCGGGAAGC 62.822 72.222 13.26 13.26 43.05 3.86
231 232 4.069232 CGAGCAGTCCGGGAAGCA 62.069 66.667 20.66 0.00 0.00 3.91
232 233 2.125350 GAGCAGTCCGGGAAGCAG 60.125 66.667 20.66 4.20 0.00 4.24
233 234 4.400961 AGCAGTCCGGGAAGCAGC 62.401 66.667 20.66 12.57 0.00 5.25
235 236 4.069232 CAGTCCGGGAAGCAGCGA 62.069 66.667 0.00 0.00 0.00 4.93
236 237 3.764466 AGTCCGGGAAGCAGCGAG 61.764 66.667 0.00 0.00 0.00 5.03
247 248 3.071580 GCAGCGAGCCTTCAATACT 57.928 52.632 0.00 0.00 37.23 2.12
248 249 0.933796 GCAGCGAGCCTTCAATACTC 59.066 55.000 0.00 0.00 37.23 2.59
251 252 2.208074 CGAGCCTTCAATACTCGCG 58.792 57.895 0.00 0.00 45.67 5.87
252 253 1.812214 CGAGCCTTCAATACTCGCGC 61.812 60.000 0.00 0.00 45.67 6.86
253 254 0.806102 GAGCCTTCAATACTCGCGCA 60.806 55.000 8.75 0.00 0.00 6.09
254 255 1.084370 AGCCTTCAATACTCGCGCAC 61.084 55.000 8.75 0.00 0.00 5.34
255 256 1.358725 GCCTTCAATACTCGCGCACA 61.359 55.000 8.75 0.00 0.00 4.57
256 257 0.370273 CCTTCAATACTCGCGCACAC 59.630 55.000 8.75 0.00 0.00 3.82
257 258 1.067693 CTTCAATACTCGCGCACACA 58.932 50.000 8.75 0.00 0.00 3.72
258 259 1.459209 CTTCAATACTCGCGCACACAA 59.541 47.619 8.75 0.00 0.00 3.33
259 260 1.503294 TCAATACTCGCGCACACAAA 58.497 45.000 8.75 0.00 0.00 2.83
260 261 1.459209 TCAATACTCGCGCACACAAAG 59.541 47.619 8.75 0.00 0.00 2.77
261 262 1.194547 CAATACTCGCGCACACAAAGT 59.805 47.619 8.75 0.00 0.00 2.66
272 273 2.404083 CACAAAGTGTGCGGTTCCT 58.596 52.632 0.00 0.00 41.89 3.36
273 274 0.029300 CACAAAGTGTGCGGTTCCTG 59.971 55.000 0.00 0.00 41.89 3.86
274 275 0.393808 ACAAAGTGTGCGGTTCCTGT 60.394 50.000 0.00 0.00 0.00 4.00
275 276 1.134340 ACAAAGTGTGCGGTTCCTGTA 60.134 47.619 0.00 0.00 0.00 2.74
276 277 1.944024 CAAAGTGTGCGGTTCCTGTAA 59.056 47.619 0.00 0.00 0.00 2.41
277 278 2.552315 CAAAGTGTGCGGTTCCTGTAAT 59.448 45.455 0.00 0.00 0.00 1.89
278 279 3.688694 AAGTGTGCGGTTCCTGTAATA 57.311 42.857 0.00 0.00 0.00 0.98
279 280 3.247006 AGTGTGCGGTTCCTGTAATAG 57.753 47.619 0.00 0.00 0.00 1.73
280 281 1.664151 GTGTGCGGTTCCTGTAATAGC 59.336 52.381 0.00 0.00 0.00 2.97
281 282 1.296727 GTGCGGTTCCTGTAATAGCC 58.703 55.000 0.00 0.00 0.00 3.93
282 283 0.179094 TGCGGTTCCTGTAATAGCCG 60.179 55.000 0.00 0.00 41.79 5.52
283 284 2.601562 CGGTTCCTGTAATAGCCGC 58.398 57.895 0.00 0.00 32.73 6.53
322 323 6.687105 CCAACATCGCTAAGTTAAAAGTATGC 59.313 38.462 0.00 0.00 0.00 3.14
337 338 2.031870 GTATGCAAATCCCTGAACCCC 58.968 52.381 0.00 0.00 0.00 4.95
339 340 0.189574 TGCAAATCCCTGAACCCCAA 59.810 50.000 0.00 0.00 0.00 4.12
349 350 0.407918 TGAACCCCAATCCACCTTCC 59.592 55.000 0.00 0.00 0.00 3.46
355 356 1.064389 CCCAATCCACCTTCCCTCTTC 60.064 57.143 0.00 0.00 0.00 2.87
380 381 3.222173 TGGTCAATTTATCCCATCCGG 57.778 47.619 0.00 0.00 0.00 5.14
406 407 4.982241 ATGACACCGATCCCATTTATCT 57.018 40.909 0.00 0.00 0.00 1.98
409 410 3.815401 GACACCGATCCCATTTATCTTGG 59.185 47.826 0.00 0.00 0.00 3.61
426 427 1.259609 TGGTTACTCCACCAGTACCG 58.740 55.000 0.00 0.00 42.27 4.02
436 437 1.548719 CACCAGTACCGGTTGATGAGA 59.451 52.381 15.04 0.00 37.07 3.27
439 440 3.021695 CCAGTACCGGTTGATGAGAGTA 58.978 50.000 15.04 0.00 0.00 2.59
454 455 4.614475 TGAGAGTACCAATCTCCTCACAT 58.386 43.478 7.85 0.00 42.13 3.21
485 486 6.429791 TGGTTATATCAAAACACGACATGG 57.570 37.500 0.00 0.00 0.00 3.66
487 488 5.163703 GGTTATATCAAAACACGACATGGCA 60.164 40.000 0.00 0.00 0.00 4.92
506 507 0.603065 AAAAGGTCGGGATTGCTTGC 59.397 50.000 0.00 0.00 0.00 4.01
511 512 4.520846 CGGGATTGCTTGCGCGAC 62.521 66.667 12.10 0.88 42.14 5.19
516 517 0.097674 GATTGCTTGCGCGACTGATT 59.902 50.000 12.10 0.00 39.65 2.57
529 531 5.390613 CGCGACTGATTTAACCAAATTTCT 58.609 37.500 0.00 0.00 34.44 2.52
547 549 3.194005 TCTTTCCCCGACATTGATAGC 57.806 47.619 0.00 0.00 0.00 2.97
549 551 3.054728 TCTTTCCCCGACATTGATAGCAA 60.055 43.478 0.00 0.00 38.60 3.91
595 597 5.566623 CGCTGCCATATATTCTGCTTTATG 58.433 41.667 0.00 0.00 0.00 1.90
640 642 1.455383 CCCCCACAAATATCGGCAGC 61.455 60.000 0.00 0.00 0.00 5.25
641 643 1.455383 CCCCACAAATATCGGCAGCC 61.455 60.000 0.00 0.00 0.00 4.85
654 656 0.249911 GGCAGCCCAAGGTATCTACG 60.250 60.000 0.00 0.00 0.00 3.51
667 669 2.225068 ATCTACGCCCTTGTGATTCG 57.775 50.000 0.00 0.00 0.00 3.34
674 676 1.608025 GCCCTTGTGATTCGTGTGAGA 60.608 52.381 0.00 0.00 0.00 3.27
679 681 0.391263 GTGATTCGTGTGAGACCCCC 60.391 60.000 0.00 0.00 0.00 5.40
697 699 2.359900 CCCAAAATCTGAAGGACCTCG 58.640 52.381 0.00 0.00 0.00 4.63
704 706 0.391793 CTGAAGGACCTCGGCTTTCC 60.392 60.000 0.00 0.00 0.00 3.13
705 707 0.836400 TGAAGGACCTCGGCTTTCCT 60.836 55.000 0.00 0.00 41.84 3.36
706 708 0.108089 GAAGGACCTCGGCTTTCCTC 60.108 60.000 0.00 0.00 38.93 3.71
707 709 0.836400 AAGGACCTCGGCTTTCCTCA 60.836 55.000 0.00 0.00 38.93 3.86
727 729 0.596600 CTGCACTTGTGCCTTTGCTG 60.597 55.000 21.01 0.00 38.71 4.41
733 735 3.004629 CACTTGTGCCTTTGCTGAACATA 59.995 43.478 0.00 0.00 38.71 2.29
740 742 3.829948 CCTTTGCTGAACATAACTGCAG 58.170 45.455 13.48 13.48 41.52 4.41
757 759 6.699575 ACTGCAGACTTGTTCTTGTTTATT 57.300 33.333 23.35 0.00 28.96 1.40
770 772 5.345702 TCTTGTTTATTATCTGTCCGGACG 58.654 41.667 28.70 22.28 0.00 4.79
772 774 2.798847 GTTTATTATCTGTCCGGACGGC 59.201 50.000 34.48 16.65 37.60 5.68
773 775 0.963962 TATTATCTGTCCGGACGGCC 59.036 55.000 34.48 10.78 37.60 6.13
808 810 3.708890 CAAGATTGCTTGCAGTTTGTGA 58.291 40.909 0.00 0.00 44.41 3.58
814 816 0.825010 CTTGCAGTTTGTGAGCCCCT 60.825 55.000 0.00 0.00 0.00 4.79
817 819 1.109323 GCAGTTTGTGAGCCCCTTGT 61.109 55.000 0.00 0.00 0.00 3.16
826 828 2.837291 GCCCCTTGTGTGGTTGCA 60.837 61.111 0.00 0.00 0.00 4.08
827 829 2.859981 GCCCCTTGTGTGGTTGCAG 61.860 63.158 0.00 0.00 0.00 4.41
828 830 1.152777 CCCCTTGTGTGGTTGCAGA 60.153 57.895 0.00 0.00 0.00 4.26
829 831 0.540365 CCCCTTGTGTGGTTGCAGAT 60.540 55.000 0.00 0.00 0.00 2.90
830 832 1.271871 CCCCTTGTGTGGTTGCAGATA 60.272 52.381 0.00 0.00 0.00 1.98
831 833 2.086869 CCCTTGTGTGGTTGCAGATAG 58.913 52.381 0.00 0.00 0.00 2.08
832 834 2.553028 CCCTTGTGTGGTTGCAGATAGT 60.553 50.000 0.00 0.00 0.00 2.12
833 835 3.307410 CCCTTGTGTGGTTGCAGATAGTA 60.307 47.826 0.00 0.00 0.00 1.82
834 836 3.935203 CCTTGTGTGGTTGCAGATAGTAG 59.065 47.826 0.00 0.00 0.00 2.57
835 837 2.972625 TGTGTGGTTGCAGATAGTAGC 58.027 47.619 0.00 0.00 0.00 3.58
872 874 1.233019 GATCCGATTGGCCACATCTG 58.767 55.000 3.88 8.82 34.14 2.90
940 942 1.648302 CCCAGATGGATCCAAGCCCA 61.648 60.000 20.67 0.00 37.39 5.36
1006 1009 8.476562 ATCGAAGACTGACTCGACAGAGAAAC 62.477 46.154 9.80 0.00 43.90 2.78
1053 1056 1.378124 GACGACGAGGGAGAGAAGGG 61.378 65.000 0.00 0.00 0.00 3.95
1280 1283 2.416893 GGAGTTCGACTGATTTTGAGCC 59.583 50.000 0.00 0.00 0.00 4.70
1297 1300 1.883084 CCTGCCGTAGTGATTCCGC 60.883 63.158 0.00 0.00 0.00 5.54
1331 1334 3.652055 AGGACCAGATTAGCTCATCTGT 58.348 45.455 27.93 19.21 46.19 3.41
1353 1356 2.534298 CTGGAGCAATCGTCTGTACTG 58.466 52.381 0.00 0.00 0.00 2.74
1384 1392 2.937799 CACTCTGGAGTAGTAGTCCGTC 59.062 54.545 17.51 0.00 40.67 4.79
1402 1410 2.924290 CGTCTCCATTCCGTCTCTTTTC 59.076 50.000 0.00 0.00 0.00 2.29
1430 1438 3.304257 GCGTAGAATTGATCCTTGCATGG 60.304 47.826 12.41 12.41 0.00 3.66
1545 1555 6.777213 TGCCTTGTTTAGTTTTGTTTAGGA 57.223 33.333 0.00 0.00 0.00 2.94
1579 1589 3.942829 TGTAGCCTCCTTCTGTGAATTG 58.057 45.455 0.00 0.00 0.00 2.32
1608 1618 5.221641 TGTTGAACCACATGTAAGAGCTACT 60.222 40.000 0.00 0.00 0.00 2.57
1614 1624 4.202161 CCACATGTAAGAGCTACTAGGTGG 60.202 50.000 0.00 0.00 38.78 4.61
1616 1626 4.645588 ACATGTAAGAGCTACTAGGTGGAC 59.354 45.833 0.00 0.00 0.00 4.02
1629 1639 4.651503 ACTAGGTGGACTTCTGGATGTATG 59.348 45.833 0.00 0.00 0.00 2.39
1729 1739 6.060028 TCTGTTCATGTGTAACTTTTGCTC 57.940 37.500 0.00 0.00 38.04 4.26
1923 1933 1.029947 CGGGTTATGACTTGGCCACC 61.030 60.000 3.88 0.00 0.00 4.61
1981 1992 8.462016 GGTGTAATTCTTAGCTTTGATCATTGT 58.538 33.333 0.00 0.00 0.00 2.71
2027 2070 8.582657 TTAGAGGATTACATAGTCTATGGCTC 57.417 38.462 21.32 14.35 40.47 4.70
2098 2141 2.044650 TACTCCCTCCGTCCCACG 60.045 66.667 0.00 0.00 42.11 4.94
2121 2164 7.178712 CGATATAAGATCGTTTTTCAAGCCT 57.821 36.000 0.00 0.00 36.84 4.58
2122 2165 7.284351 CGATATAAGATCGTTTTTCAAGCCTC 58.716 38.462 0.00 0.00 36.84 4.70
2123 2166 7.042725 CGATATAAGATCGTTTTTCAAGCCTCA 60.043 37.037 0.00 0.00 36.84 3.86
2124 2167 8.682936 ATATAAGATCGTTTTTCAAGCCTCAT 57.317 30.769 0.00 0.00 0.00 2.90
2125 2168 9.778741 ATATAAGATCGTTTTTCAAGCCTCATA 57.221 29.630 0.00 0.00 0.00 2.15
2126 2169 8.682936 ATAAGATCGTTTTTCAAGCCTCATAT 57.317 30.769 0.00 0.00 0.00 1.78
2127 2170 7.396540 AAGATCGTTTTTCAAGCCTCATATT 57.603 32.000 0.00 0.00 0.00 1.28
2128 2171 8.506168 AAGATCGTTTTTCAAGCCTCATATTA 57.494 30.769 0.00 0.00 0.00 0.98
2129 2172 8.682936 AGATCGTTTTTCAAGCCTCATATTAT 57.317 30.769 0.00 0.00 0.00 1.28
2130 2173 8.562892 AGATCGTTTTTCAAGCCTCATATTATG 58.437 33.333 0.00 0.00 0.00 1.90
2131 2174 7.026631 TCGTTTTTCAAGCCTCATATTATGG 57.973 36.000 3.89 0.00 0.00 2.74
2132 2175 6.039270 TCGTTTTTCAAGCCTCATATTATGGG 59.961 38.462 3.89 0.03 0.00 4.00
2133 2176 6.039270 CGTTTTTCAAGCCTCATATTATGGGA 59.961 38.462 5.05 0.00 30.24 4.37
2134 2177 6.959639 TTTTCAAGCCTCATATTATGGGAC 57.040 37.500 5.05 0.00 30.24 4.46
2135 2178 4.271696 TCAAGCCTCATATTATGGGACG 57.728 45.455 5.05 0.00 30.24 4.79
2136 2179 3.007940 TCAAGCCTCATATTATGGGACGG 59.992 47.826 5.05 2.43 30.24 4.79
2137 2180 2.902608 AGCCTCATATTATGGGACGGA 58.097 47.619 5.05 0.00 30.24 4.69
2138 2181 2.834549 AGCCTCATATTATGGGACGGAG 59.165 50.000 5.05 0.00 30.24 4.63
2139 2182 2.093447 GCCTCATATTATGGGACGGAGG 60.093 54.545 5.05 4.18 42.54 4.30
2140 2183 2.501723 CCTCATATTATGGGACGGAGGG 59.498 54.545 5.05 0.00 37.41 4.30
2141 2184 3.441101 CTCATATTATGGGACGGAGGGA 58.559 50.000 0.00 0.00 30.24 4.20
2142 2185 3.441101 TCATATTATGGGACGGAGGGAG 58.559 50.000 3.89 0.00 0.00 4.30
2143 2186 3.173965 CATATTATGGGACGGAGGGAGT 58.826 50.000 0.00 0.00 0.00 3.85
2144 2187 4.044952 TCATATTATGGGACGGAGGGAGTA 59.955 45.833 3.89 0.00 0.00 2.59
2145 2188 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
2146 2189 2.852714 TATGGGACGGAGGGAGTAAA 57.147 50.000 0.00 0.00 0.00 2.01
2147 2190 1.961133 ATGGGACGGAGGGAGTAAAA 58.039 50.000 0.00 0.00 0.00 1.52
2148 2191 0.978907 TGGGACGGAGGGAGTAAAAC 59.021 55.000 0.00 0.00 0.00 2.43
2149 2192 0.978907 GGGACGGAGGGAGTAAAACA 59.021 55.000 0.00 0.00 0.00 2.83
2150 2193 1.558294 GGGACGGAGGGAGTAAAACAT 59.442 52.381 0.00 0.00 0.00 2.71
2151 2194 2.767960 GGGACGGAGGGAGTAAAACATA 59.232 50.000 0.00 0.00 0.00 2.29
2152 2195 3.198417 GGGACGGAGGGAGTAAAACATAA 59.802 47.826 0.00 0.00 0.00 1.90
2153 2196 4.323715 GGGACGGAGGGAGTAAAACATAAA 60.324 45.833 0.00 0.00 0.00 1.40
2154 2197 4.874396 GGACGGAGGGAGTAAAACATAAAG 59.126 45.833 0.00 0.00 0.00 1.85
2155 2198 4.840271 ACGGAGGGAGTAAAACATAAAGG 58.160 43.478 0.00 0.00 0.00 3.11
2156 2199 4.196971 CGGAGGGAGTAAAACATAAAGGG 58.803 47.826 0.00 0.00 0.00 3.95
2157 2200 4.533815 GGAGGGAGTAAAACATAAAGGGG 58.466 47.826 0.00 0.00 0.00 4.79
2158 2201 3.952323 GAGGGAGTAAAACATAAAGGGGC 59.048 47.826 0.00 0.00 0.00 5.80
2159 2202 3.335484 AGGGAGTAAAACATAAAGGGGCA 59.665 43.478 0.00 0.00 0.00 5.36
2160 2203 4.016572 AGGGAGTAAAACATAAAGGGGCAT 60.017 41.667 0.00 0.00 0.00 4.40
2161 2204 5.194942 AGGGAGTAAAACATAAAGGGGCATA 59.805 40.000 0.00 0.00 0.00 3.14
2162 2205 5.301045 GGGAGTAAAACATAAAGGGGCATAC 59.699 44.000 0.00 0.00 0.00 2.39
2163 2206 6.127101 GGAGTAAAACATAAAGGGGCATACT 58.873 40.000 0.00 0.00 0.00 2.12
2164 2207 7.284820 GGAGTAAAACATAAAGGGGCATACTA 58.715 38.462 0.00 0.00 0.00 1.82
2165 2208 7.444487 GGAGTAAAACATAAAGGGGCATACTAG 59.556 40.741 0.00 0.00 0.00 2.57
2166 2209 7.868974 AGTAAAACATAAAGGGGCATACTAGT 58.131 34.615 0.00 0.00 0.00 2.57
2167 2210 7.773690 AGTAAAACATAAAGGGGCATACTAGTG 59.226 37.037 5.39 0.00 0.00 2.74
2168 2211 5.968676 AACATAAAGGGGCATACTAGTGA 57.031 39.130 5.39 0.00 0.00 3.41
2169 2212 5.552870 ACATAAAGGGGCATACTAGTGAG 57.447 43.478 5.39 0.00 0.00 3.51
2170 2213 4.969359 ACATAAAGGGGCATACTAGTGAGT 59.031 41.667 5.39 0.00 39.92 3.41
2171 2214 5.428783 ACATAAAGGGGCATACTAGTGAGTT 59.571 40.000 5.39 0.00 37.10 3.01
2172 2215 4.929146 AAAGGGGCATACTAGTGAGTTT 57.071 40.909 5.39 0.00 37.10 2.66
2173 2216 4.929146 AAGGGGCATACTAGTGAGTTTT 57.071 40.909 5.39 0.00 37.10 2.43
2174 2217 4.222124 AGGGGCATACTAGTGAGTTTTG 57.778 45.455 5.39 0.00 37.10 2.44
2175 2218 3.587506 AGGGGCATACTAGTGAGTTTTGT 59.412 43.478 5.39 0.00 37.10 2.83
2176 2219 4.042934 AGGGGCATACTAGTGAGTTTTGTT 59.957 41.667 5.39 0.00 37.10 2.83
2177 2220 4.156008 GGGGCATACTAGTGAGTTTTGTTG 59.844 45.833 5.39 0.00 37.10 3.33
2178 2221 5.001232 GGGCATACTAGTGAGTTTTGTTGA 58.999 41.667 5.39 0.00 37.10 3.18
2179 2222 5.472137 GGGCATACTAGTGAGTTTTGTTGAA 59.528 40.000 5.39 0.00 37.10 2.69
2180 2223 6.016610 GGGCATACTAGTGAGTTTTGTTGAAA 60.017 38.462 5.39 0.00 37.10 2.69
2181 2224 7.422399 GGCATACTAGTGAGTTTTGTTGAAAA 58.578 34.615 5.39 0.00 37.10 2.29
2182 2225 8.082242 GGCATACTAGTGAGTTTTGTTGAAAAT 58.918 33.333 5.39 0.00 37.10 1.82
2183 2226 9.463443 GCATACTAGTGAGTTTTGTTGAAAATT 57.537 29.630 5.39 0.00 37.10 1.82
2190 2233 8.682710 AGTGAGTTTTGTTGAAAATTACTAGCA 58.317 29.630 0.00 0.00 39.42 3.49
2191 2234 9.463443 GTGAGTTTTGTTGAAAATTACTAGCAT 57.537 29.630 0.00 0.00 33.63 3.79
2192 2235 9.462174 TGAGTTTTGTTGAAAATTACTAGCATG 57.538 29.630 0.00 0.00 33.63 4.06
2193 2236 8.816640 AGTTTTGTTGAAAATTACTAGCATGG 57.183 30.769 0.00 0.00 33.63 3.66
2194 2237 7.872483 AGTTTTGTTGAAAATTACTAGCATGGG 59.128 33.333 0.00 0.00 33.63 4.00
2195 2238 5.323371 TGTTGAAAATTACTAGCATGGGC 57.677 39.130 0.00 0.00 41.61 5.36
2196 2239 4.159506 TGTTGAAAATTACTAGCATGGGCC 59.840 41.667 0.00 0.00 42.56 5.80
2197 2240 3.974719 TGAAAATTACTAGCATGGGCCA 58.025 40.909 9.61 9.61 42.56 5.36
2198 2241 4.545678 TGAAAATTACTAGCATGGGCCAT 58.454 39.130 14.78 14.78 42.56 4.40
2199 2242 5.700183 TGAAAATTACTAGCATGGGCCATA 58.300 37.500 20.73 2.47 42.56 2.74
2200 2243 5.534654 TGAAAATTACTAGCATGGGCCATAC 59.465 40.000 20.73 14.56 42.56 2.39
2201 2244 5.324832 AAATTACTAGCATGGGCCATACT 57.675 39.130 22.44 22.44 42.56 2.12
2202 2245 6.448369 AAATTACTAGCATGGGCCATACTA 57.552 37.500 22.28 22.28 42.56 1.82
2203 2246 6.448369 AATTACTAGCATGGGCCATACTAA 57.552 37.500 23.45 13.77 42.56 2.24
2204 2247 3.771577 ACTAGCATGGGCCATACTAAC 57.228 47.619 23.45 10.34 42.56 2.34
2205 2248 3.318313 ACTAGCATGGGCCATACTAACT 58.682 45.455 23.45 15.94 42.56 2.24
2206 2249 4.489737 ACTAGCATGGGCCATACTAACTA 58.510 43.478 23.45 16.16 42.56 2.24
2207 2250 3.771577 AGCATGGGCCATACTAACTAC 57.228 47.619 20.73 1.57 42.56 2.73
2208 2251 3.318313 AGCATGGGCCATACTAACTACT 58.682 45.455 20.73 3.89 42.56 2.57
2209 2252 4.489737 AGCATGGGCCATACTAACTACTA 58.510 43.478 20.73 0.00 42.56 1.82
2210 2253 4.905456 AGCATGGGCCATACTAACTACTAA 59.095 41.667 20.73 0.00 42.56 2.24
2211 2254 5.368523 AGCATGGGCCATACTAACTACTAAA 59.631 40.000 20.73 0.00 42.56 1.85
2212 2255 6.044404 AGCATGGGCCATACTAACTACTAAAT 59.956 38.462 20.73 0.00 42.56 1.40
2213 2256 6.371825 GCATGGGCCATACTAACTACTAAATC 59.628 42.308 20.73 0.00 0.00 2.17
2214 2257 7.450074 CATGGGCCATACTAACTACTAAATCA 58.550 38.462 20.73 0.00 0.00 2.57
2215 2258 7.626999 TGGGCCATACTAACTACTAAATCAT 57.373 36.000 0.00 0.00 0.00 2.45
2216 2259 7.450074 TGGGCCATACTAACTACTAAATCATG 58.550 38.462 0.00 0.00 0.00 3.07
2217 2260 7.291416 TGGGCCATACTAACTACTAAATCATGA 59.709 37.037 0.00 0.00 0.00 3.07
2218 2261 8.154856 GGGCCATACTAACTACTAAATCATGAA 58.845 37.037 4.39 0.00 0.00 2.57
2219 2262 8.989980 GGCCATACTAACTACTAAATCATGAAC 58.010 37.037 0.00 0.00 0.00 3.18
2220 2263 9.542462 GCCATACTAACTACTAAATCATGAACA 57.458 33.333 0.00 0.00 0.00 3.18
2270 2313 6.071391 TGAGAAGTTGGGGAATTGCTATTTTC 60.071 38.462 0.00 0.00 0.00 2.29
2300 2344 8.713971 TGGAGGATTATGTGAACTTGTATATGT 58.286 33.333 0.00 0.00 0.00 2.29
2313 2357 7.145932 ACTTGTATATGTGGTGCTTCTTTTC 57.854 36.000 0.00 0.00 0.00 2.29
2318 2362 7.665559 TGTATATGTGGTGCTTCTTTTCTTTCT 59.334 33.333 0.00 0.00 0.00 2.52
2325 2369 8.568794 GTGGTGCTTCTTTTCTTTCTTATAACT 58.431 33.333 0.00 0.00 0.00 2.24
2353 2397 5.261209 ACAAACTGTTTGCTGCATCTTTA 57.739 34.783 28.02 0.00 44.39 1.85
2606 2650 3.670625 TGTGTAATCCCGACTCCAAAAG 58.329 45.455 0.00 0.00 0.00 2.27
2607 2651 2.418976 GTGTAATCCCGACTCCAAAAGC 59.581 50.000 0.00 0.00 0.00 3.51
2626 2670 0.929824 CAAGGTGCACACGCTTTTCG 60.930 55.000 20.43 0.00 45.38 3.46
2641 2685 3.670523 GCTTTTCGAGATTCAAGTTTGGC 59.329 43.478 0.00 0.00 0.00 4.52
2687 2731 7.836685 TGTGGGTTATGTGTCATTATACCATTT 59.163 33.333 0.00 0.00 0.00 2.32
2737 2781 9.912634 CTAATGGCATAATTTTAGGTTACATGG 57.087 33.333 0.00 0.00 0.00 3.66
2739 2783 5.658634 TGGCATAATTTTAGGTTACATGGCA 59.341 36.000 0.00 4.08 39.22 4.92
2793 2837 6.762108 AGTTAAATCTCGAAAAGTATGCACG 58.238 36.000 0.00 0.00 0.00 5.34
2797 2841 0.320858 TCGAAAAGTATGCACGCCCA 60.321 50.000 0.00 0.00 0.00 5.36
2799 2843 1.165270 GAAAAGTATGCACGCCCACT 58.835 50.000 0.00 0.00 0.00 4.00
2802 2846 0.881118 AAGTATGCACGCCCACTTTG 59.119 50.000 0.00 0.00 0.00 2.77
2818 2862 1.421646 CTTTGTGGAGTTGGAGGGAGT 59.578 52.381 0.00 0.00 0.00 3.85
2821 2865 1.149288 TGTGGAGTTGGAGGGAGTAGT 59.851 52.381 0.00 0.00 0.00 2.73
2845 2889 5.779241 ATCTTACAAGATGGACCTTGGAA 57.221 39.130 3.67 5.12 45.76 3.53
2928 2972 4.311606 TGTTGCGTATGACTTTAGCTTCA 58.688 39.130 0.00 0.00 0.00 3.02
2936 2980 6.807230 CGTATGACTTTAGCTTCAACTACTGT 59.193 38.462 0.00 0.00 0.00 3.55
3016 3060 4.946772 TGAACTGAAAGATTGTCACAACCA 59.053 37.500 0.00 0.00 37.43 3.67
3114 3158 5.996513 CCATTGCTTAGTGAAGATAGAGCAT 59.003 40.000 0.00 0.00 39.56 3.79
3117 3161 5.595885 TGCTTAGTGAAGATAGAGCATCAC 58.404 41.667 0.00 0.00 41.88 3.06
3138 3183 8.587608 CATCACCAATATATATTGCCAAGGTTT 58.412 33.333 24.38 8.38 41.23 3.27
3151 3196 3.639561 GCCAAGGTTTCAAGGGAACTAAA 59.360 43.478 0.00 0.00 42.68 1.85
3156 3201 4.832823 AGGTTTCAAGGGAACTAAACATGG 59.167 41.667 0.00 0.00 42.68 3.66
3157 3202 4.830600 GGTTTCAAGGGAACTAAACATGGA 59.169 41.667 0.00 0.00 42.68 3.41
3158 3203 5.480422 GGTTTCAAGGGAACTAAACATGGAT 59.520 40.000 0.00 0.00 42.68 3.41
3159 3204 6.014584 GGTTTCAAGGGAACTAAACATGGATT 60.015 38.462 0.00 0.00 42.68 3.01
3160 3205 7.177744 GGTTTCAAGGGAACTAAACATGGATTA 59.822 37.037 0.00 0.00 42.68 1.75
3161 3206 8.581578 GTTTCAAGGGAACTAAACATGGATTAA 58.418 33.333 0.00 0.00 42.68 1.40
3162 3207 7.696992 TCAAGGGAACTAAACATGGATTAAC 57.303 36.000 0.00 0.00 42.68 2.01
3163 3208 7.466804 TCAAGGGAACTAAACATGGATTAACT 58.533 34.615 0.00 0.00 42.68 2.24
3164 3209 8.607713 TCAAGGGAACTAAACATGGATTAACTA 58.392 33.333 0.00 0.00 42.68 2.24
3165 3210 9.408648 CAAGGGAACTAAACATGGATTAACTAT 57.591 33.333 0.00 0.00 42.68 2.12
3166 3211 9.990868 AAGGGAACTAAACATGGATTAACTATT 57.009 29.630 0.00 0.00 42.68 1.73
3228 3273 2.441051 TGGCCGGCCCAAATAACA 59.559 55.556 41.75 19.10 41.82 2.41
3252 3297 4.581824 GGGCTGTCACAATGATCAATGTAT 59.418 41.667 15.91 0.00 0.00 2.29
3259 3304 9.844257 TGTCACAATGATCAATGTATATTACCA 57.156 29.630 15.91 3.41 0.00 3.25
3291 3336 4.026968 CGGTACATGTTGCAAGTTTTGTTG 60.027 41.667 2.30 0.00 0.00 3.33
3294 3339 6.020201 GGTACATGTTGCAAGTTTTGTTGTAC 60.020 38.462 2.30 9.93 37.33 2.90
3324 3369 2.097396 CGACACTTGCAGACAACTTACG 60.097 50.000 0.00 0.00 0.00 3.18
3329 3374 3.068307 ACTTGCAGACAACTTACGTCTCT 59.932 43.478 0.00 0.00 41.80 3.10
3338 3383 4.586001 ACAACTTACGTCTCTGGGTAAAGA 59.414 41.667 0.00 0.00 0.00 2.52
3428 3473 5.628797 ATTTTCCCACTCCACAACATTTT 57.371 34.783 0.00 0.00 0.00 1.82
3463 3508 1.753930 TGGGCACACTTCATGCTATG 58.246 50.000 0.00 0.00 42.93 2.23
3540 3585 3.743521 ACAGCAGTGCAGTTTGAATAGA 58.256 40.909 19.20 0.00 0.00 1.98
3547 3592 3.848019 GTGCAGTTTGAATAGACAATGCG 59.152 43.478 0.00 0.00 38.08 4.73
3575 3620 7.775053 ATGTGTTATCCAAATTGTACCACTT 57.225 32.000 0.00 0.00 0.00 3.16
3745 3790 4.862371 GGGTTCCCCAATATTGTCAACTA 58.138 43.478 14.25 0.00 44.65 2.24
3868 3913 6.415573 GTGGTTCAGAGGTAAAATAGACCAT 58.584 40.000 0.00 0.00 39.65 3.55
3919 3964 5.242838 TCAGGGTTATTTGGAAATGACACAC 59.757 40.000 10.78 0.45 39.84 3.82
4018 4063 2.301583 GGCATCTAGAGGGAAGATGGTC 59.698 54.545 6.52 0.30 46.88 4.02
4055 4100 6.455647 CGTTGATATGACACATACATACCCT 58.544 40.000 0.00 0.00 33.89 4.34
4056 4101 6.366061 CGTTGATATGACACATACATACCCTG 59.634 42.308 0.00 0.00 33.89 4.45
4096 4146 6.426328 GGTTTCTCATATCATAGCTGTCCAAG 59.574 42.308 0.00 0.00 0.00 3.61
4115 4165 1.417890 AGTAGAGTGCAAGCTGTTGGT 59.582 47.619 0.00 0.00 33.87 3.67
4131 4181 3.317711 TGTTGGTGAGTTTGCTAACATGG 59.682 43.478 13.46 0.00 36.70 3.66
4189 4239 7.824289 AGCTAGCACAAATGTCAACTAATCTTA 59.176 33.333 18.83 0.00 0.00 2.10
4238 4288 7.996644 TGGTATTTGTATATTTCCTGACCCTTC 59.003 37.037 0.00 0.00 0.00 3.46
4367 4418 3.250040 GGCTTCGAGCTTGTCTTTGTTAA 59.750 43.478 0.00 0.00 41.99 2.01
4371 4422 6.566753 GCTTCGAGCTTGTCTTTGTTAAGAAT 60.567 38.462 0.00 0.00 38.99 2.40
4671 4734 2.157738 ACAAGTTGCATGGAAGCTCTC 58.842 47.619 0.00 0.00 34.99 3.20
4687 4750 3.440522 AGCTCTCCTCGGTTTAATTTTGC 59.559 43.478 0.00 0.00 0.00 3.68
4799 4863 1.138859 GGTTTTCTGCAAGCCCACTTT 59.861 47.619 0.00 0.00 32.29 2.66
4885 4949 1.154654 GGCGACGAAAAAGCTCACG 60.155 57.895 0.00 0.00 0.00 4.35
4909 4973 0.038744 AGGCATTGTTGTAGGCTGCT 59.961 50.000 3.77 0.00 36.75 4.24
5257 5321 1.443872 CGAGAACGTGAACCTCCGG 60.444 63.158 0.00 0.00 34.56 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.799564 AGAGTCTCTGAACTGATGAACC 57.200 45.455 0.18 0.00 0.00 3.62
21 22 2.113774 CAGGGGTGCTGCTTGACA 59.886 61.111 0.00 0.00 0.00 3.58
22 23 3.368571 GCAGGGGTGCTGCTTGAC 61.369 66.667 0.00 0.00 43.81 3.18
44 45 4.064768 TAGGAGGCCCCGGACGAA 62.065 66.667 0.73 0.00 40.87 3.85
45 46 4.517934 CTAGGAGGCCCCGGACGA 62.518 72.222 0.73 0.00 40.87 4.20
46 47 4.835891 ACTAGGAGGCCCCGGACG 62.836 72.222 0.73 0.00 40.87 4.79
47 48 3.155167 CACTAGGAGGCCCCGGAC 61.155 72.222 0.73 0.00 40.87 4.79
50 51 3.541713 GAGCACTAGGAGGCCCCG 61.542 72.222 0.00 0.00 40.87 5.73
51 52 3.164977 GGAGCACTAGGAGGCCCC 61.165 72.222 0.00 0.00 0.00 5.80
52 53 3.164977 GGGAGCACTAGGAGGCCC 61.165 72.222 0.00 0.00 0.00 5.80
53 54 2.041405 AGGGAGCACTAGGAGGCC 60.041 66.667 0.00 0.00 0.00 5.19
54 55 2.494530 CGAGGGAGCACTAGGAGGC 61.495 68.421 0.00 0.00 0.00 4.70
55 56 1.830408 CCGAGGGAGCACTAGGAGG 60.830 68.421 0.00 0.00 35.51 4.30
56 57 1.830408 CCCGAGGGAGCACTAGGAG 60.830 68.421 0.84 0.00 35.51 3.69
57 58 2.279073 CCCGAGGGAGCACTAGGA 59.721 66.667 0.84 0.00 35.51 2.94
72 73 4.147587 ATGACCCATGGCTGCCCC 62.148 66.667 17.53 0.00 0.00 5.80
73 74 2.520260 GATGACCCATGGCTGCCC 60.520 66.667 17.53 0.00 0.00 5.36
74 75 2.520260 GGATGACCCATGGCTGCC 60.520 66.667 12.87 12.87 34.14 4.85
83 84 3.475665 ATGTGTGCATTTGGGATGACCC 61.476 50.000 0.00 0.00 43.84 4.46
84 85 1.255882 TGTGTGCATTTGGGATGACC 58.744 50.000 0.00 0.00 40.81 4.02
85 86 3.255725 CAATGTGTGCATTTGGGATGAC 58.744 45.455 0.00 0.00 42.91 3.06
86 87 2.898612 ACAATGTGTGCATTTGGGATGA 59.101 40.909 0.00 0.00 42.91 2.92
87 88 3.255725 GACAATGTGTGCATTTGGGATG 58.744 45.455 0.00 0.00 42.91 3.51
88 89 2.234414 GGACAATGTGTGCATTTGGGAT 59.766 45.455 0.00 0.00 42.91 3.85
89 90 1.617850 GGACAATGTGTGCATTTGGGA 59.382 47.619 0.00 0.00 42.91 4.37
90 91 1.338011 GGGACAATGTGTGCATTTGGG 60.338 52.381 0.00 0.00 42.91 4.12
91 92 1.338011 GGGGACAATGTGTGCATTTGG 60.338 52.381 0.00 0.00 42.91 3.28
92 93 1.338011 GGGGGACAATGTGTGCATTTG 60.338 52.381 0.00 0.00 42.91 2.32
93 94 0.975887 GGGGGACAATGTGTGCATTT 59.024 50.000 0.00 0.00 42.91 2.32
94 95 1.250154 CGGGGGACAATGTGTGCATT 61.250 55.000 0.00 0.00 45.42 3.56
95 96 1.678635 CGGGGGACAATGTGTGCAT 60.679 57.895 0.00 0.00 40.73 3.96
96 97 1.769716 TACGGGGGACAATGTGTGCA 61.770 55.000 0.00 0.00 40.73 4.57
97 98 1.003112 TACGGGGGACAATGTGTGC 60.003 57.895 0.00 0.00 38.03 4.57
98 99 0.675522 GGTACGGGGGACAATGTGTG 60.676 60.000 0.00 0.00 0.00 3.82
99 100 1.128809 TGGTACGGGGGACAATGTGT 61.129 55.000 0.00 0.00 0.00 3.72
100 101 0.037017 TTGGTACGGGGGACAATGTG 59.963 55.000 0.00 0.00 0.00 3.21
101 102 0.996583 ATTGGTACGGGGGACAATGT 59.003 50.000 0.00 0.00 32.75 2.71
102 103 1.675552 GATTGGTACGGGGGACAATG 58.324 55.000 0.00 0.00 34.01 2.82
103 104 0.549469 GGATTGGTACGGGGGACAAT 59.451 55.000 0.00 0.00 36.35 2.71
104 105 0.548197 AGGATTGGTACGGGGGACAA 60.548 55.000 0.00 0.00 0.00 3.18
105 106 0.979187 GAGGATTGGTACGGGGGACA 60.979 60.000 0.00 0.00 0.00 4.02
106 107 1.693152 GGAGGATTGGTACGGGGGAC 61.693 65.000 0.00 0.00 0.00 4.46
107 108 1.383525 GGAGGATTGGTACGGGGGA 60.384 63.158 0.00 0.00 0.00 4.81
108 109 1.691337 TGGAGGATTGGTACGGGGG 60.691 63.158 0.00 0.00 0.00 5.40
109 110 1.268992 TGTGGAGGATTGGTACGGGG 61.269 60.000 0.00 0.00 0.00 5.73
110 111 0.107848 GTGTGGAGGATTGGTACGGG 60.108 60.000 0.00 0.00 0.00 5.28
111 112 0.902531 AGTGTGGAGGATTGGTACGG 59.097 55.000 0.00 0.00 0.00 4.02
112 113 4.261909 GGTATAGTGTGGAGGATTGGTACG 60.262 50.000 0.00 0.00 0.00 3.67
113 114 4.900054 AGGTATAGTGTGGAGGATTGGTAC 59.100 45.833 0.00 0.00 0.00 3.34
114 115 5.152306 AGGTATAGTGTGGAGGATTGGTA 57.848 43.478 0.00 0.00 0.00 3.25
115 116 4.008916 AGGTATAGTGTGGAGGATTGGT 57.991 45.455 0.00 0.00 0.00 3.67
116 117 4.708177 CAAGGTATAGTGTGGAGGATTGG 58.292 47.826 0.00 0.00 0.00 3.16
117 118 4.130118 GCAAGGTATAGTGTGGAGGATTG 58.870 47.826 0.00 0.00 0.00 2.67
118 119 4.040755 AGCAAGGTATAGTGTGGAGGATT 58.959 43.478 0.00 0.00 0.00 3.01
119 120 3.658725 AGCAAGGTATAGTGTGGAGGAT 58.341 45.455 0.00 0.00 0.00 3.24
120 121 3.116096 AGCAAGGTATAGTGTGGAGGA 57.884 47.619 0.00 0.00 0.00 3.71
121 122 3.914426 AAGCAAGGTATAGTGTGGAGG 57.086 47.619 0.00 0.00 0.00 4.30
122 123 5.978814 ACTTAAGCAAGGTATAGTGTGGAG 58.021 41.667 1.29 0.00 35.97 3.86
123 124 7.484993 TTACTTAAGCAAGGTATAGTGTGGA 57.515 36.000 1.29 0.00 35.97 4.02
124 125 8.732746 ATTTACTTAAGCAAGGTATAGTGTGG 57.267 34.615 1.29 0.00 35.97 4.17
125 126 9.378551 TGATTTACTTAAGCAAGGTATAGTGTG 57.621 33.333 1.29 0.00 35.97 3.82
126 127 9.953565 TTGATTTACTTAAGCAAGGTATAGTGT 57.046 29.630 1.29 0.00 37.23 3.55
132 133 9.969001 AAGGTATTGATTTACTTAAGCAAGGTA 57.031 29.630 1.29 0.00 44.53 3.08
133 134 8.879427 AAGGTATTGATTTACTTAAGCAAGGT 57.121 30.769 1.29 0.00 44.53 3.50
134 135 9.788960 GAAAGGTATTGATTTACTTAAGCAAGG 57.211 33.333 1.29 0.00 44.53 3.61
137 138 8.447833 CGTGAAAGGTATTGATTTACTTAAGCA 58.552 33.333 1.29 0.00 0.00 3.91
138 139 8.662141 TCGTGAAAGGTATTGATTTACTTAAGC 58.338 33.333 1.29 0.00 0.00 3.09
142 143 9.886132 AGTATCGTGAAAGGTATTGATTTACTT 57.114 29.630 0.00 0.00 0.00 2.24
143 144 9.886132 AAGTATCGTGAAAGGTATTGATTTACT 57.114 29.630 0.00 0.00 0.00 2.24
146 147 9.099454 GAGAAGTATCGTGAAAGGTATTGATTT 57.901 33.333 0.00 0.00 0.00 2.17
147 148 7.711339 GGAGAAGTATCGTGAAAGGTATTGATT 59.289 37.037 0.00 0.00 0.00 2.57
148 149 7.147724 TGGAGAAGTATCGTGAAAGGTATTGAT 60.148 37.037 0.00 0.00 0.00 2.57
149 150 6.153851 TGGAGAAGTATCGTGAAAGGTATTGA 59.846 38.462 0.00 0.00 0.00 2.57
150 151 6.255887 GTGGAGAAGTATCGTGAAAGGTATTG 59.744 42.308 0.00 0.00 0.00 1.90
151 152 6.338937 GTGGAGAAGTATCGTGAAAGGTATT 58.661 40.000 0.00 0.00 0.00 1.89
152 153 5.450137 CGTGGAGAAGTATCGTGAAAGGTAT 60.450 44.000 0.00 0.00 0.00 2.73
153 154 4.142534 CGTGGAGAAGTATCGTGAAAGGTA 60.143 45.833 0.00 0.00 0.00 3.08
154 155 3.367087 CGTGGAGAAGTATCGTGAAAGGT 60.367 47.826 0.00 0.00 0.00 3.50
155 156 3.179830 CGTGGAGAAGTATCGTGAAAGG 58.820 50.000 0.00 0.00 0.00 3.11
156 157 3.834610 ACGTGGAGAAGTATCGTGAAAG 58.165 45.455 0.00 0.00 33.55 2.62
157 158 3.928727 ACGTGGAGAAGTATCGTGAAA 57.071 42.857 0.00 0.00 33.55 2.69
158 159 6.484308 TCATATACGTGGAGAAGTATCGTGAA 59.516 38.462 0.00 0.00 35.44 3.18
159 160 5.993441 TCATATACGTGGAGAAGTATCGTGA 59.007 40.000 0.00 0.00 35.44 4.35
160 161 6.078479 GTCATATACGTGGAGAAGTATCGTG 58.922 44.000 0.00 0.00 35.44 4.35
161 162 5.761726 TGTCATATACGTGGAGAAGTATCGT 59.238 40.000 0.00 0.00 35.44 3.73
162 163 6.237313 TGTCATATACGTGGAGAAGTATCG 57.763 41.667 0.00 0.00 35.44 2.92
163 164 9.938670 GATATGTCATATACGTGGAGAAGTATC 57.061 37.037 5.29 0.14 35.44 2.24
164 165 9.688091 AGATATGTCATATACGTGGAGAAGTAT 57.312 33.333 5.29 0.00 37.35 2.12
165 166 9.163899 GAGATATGTCATATACGTGGAGAAGTA 57.836 37.037 5.29 0.00 0.00 2.24
166 167 7.885922 AGAGATATGTCATATACGTGGAGAAGT 59.114 37.037 5.29 0.00 0.00 3.01
167 168 8.275015 AGAGATATGTCATATACGTGGAGAAG 57.725 38.462 5.29 0.00 0.00 2.85
168 169 8.637196 AAGAGATATGTCATATACGTGGAGAA 57.363 34.615 5.29 0.00 0.00 2.87
169 170 7.337184 GGAAGAGATATGTCATATACGTGGAGA 59.663 40.741 5.29 0.00 0.00 3.71
170 171 7.476667 GGAAGAGATATGTCATATACGTGGAG 58.523 42.308 5.29 0.00 0.00 3.86
171 172 6.093633 CGGAAGAGATATGTCATATACGTGGA 59.906 42.308 5.29 0.00 0.00 4.02
172 173 6.258899 CGGAAGAGATATGTCATATACGTGG 58.741 44.000 5.29 0.00 0.00 4.94
173 174 5.739630 GCGGAAGAGATATGTCATATACGTG 59.260 44.000 5.29 0.00 0.00 4.49
174 175 5.648526 AGCGGAAGAGATATGTCATATACGT 59.351 40.000 5.29 0.00 0.00 3.57
175 176 6.125327 AGCGGAAGAGATATGTCATATACG 57.875 41.667 5.29 2.12 0.00 3.06
176 177 7.986562 TGTAGCGGAAGAGATATGTCATATAC 58.013 38.462 5.29 3.88 0.00 1.47
177 178 8.624776 CATGTAGCGGAAGAGATATGTCATATA 58.375 37.037 5.29 0.00 0.00 0.86
178 179 7.487484 CATGTAGCGGAAGAGATATGTCATAT 58.513 38.462 4.96 4.96 0.00 1.78
179 180 6.625960 GCATGTAGCGGAAGAGATATGTCATA 60.626 42.308 2.30 0.00 0.00 2.15
180 181 5.718146 CATGTAGCGGAAGAGATATGTCAT 58.282 41.667 2.30 0.00 0.00 3.06
181 182 4.559502 GCATGTAGCGGAAGAGATATGTCA 60.560 45.833 2.30 0.00 0.00 3.58
182 183 3.923461 GCATGTAGCGGAAGAGATATGTC 59.077 47.826 0.00 0.00 0.00 3.06
183 184 3.919216 GCATGTAGCGGAAGAGATATGT 58.081 45.455 0.00 0.00 0.00 2.29
203 204 1.362406 GACTGCTCGGTGCTAAAGGC 61.362 60.000 3.53 0.00 43.37 4.35
204 205 0.741221 GGACTGCTCGGTGCTAAAGG 60.741 60.000 3.53 0.00 43.37 3.11
205 206 1.078759 CGGACTGCTCGGTGCTAAAG 61.079 60.000 3.53 0.00 43.37 1.85
206 207 1.080093 CGGACTGCTCGGTGCTAAA 60.080 57.895 3.53 0.00 43.37 1.85
207 208 2.571757 CGGACTGCTCGGTGCTAA 59.428 61.111 3.53 0.00 43.37 3.09
208 209 3.449227 CCGGACTGCTCGGTGCTA 61.449 66.667 0.00 0.00 42.33 3.49
211 212 3.649277 CTTCCCGGACTGCTCGGTG 62.649 68.421 0.73 1.58 45.51 4.94
212 213 3.382832 CTTCCCGGACTGCTCGGT 61.383 66.667 0.73 0.00 45.51 4.69
213 214 4.821589 GCTTCCCGGACTGCTCGG 62.822 72.222 0.73 0.00 46.43 4.63
214 215 3.997064 CTGCTTCCCGGACTGCTCG 62.997 68.421 0.73 0.00 0.00 5.03
215 216 2.125350 CTGCTTCCCGGACTGCTC 60.125 66.667 0.73 0.00 0.00 4.26
216 217 4.400961 GCTGCTTCCCGGACTGCT 62.401 66.667 0.73 0.00 0.00 4.24
218 219 3.997064 CTCGCTGCTTCCCGGACTG 62.997 68.421 0.73 0.00 0.00 3.51
219 220 3.764466 CTCGCTGCTTCCCGGACT 61.764 66.667 0.73 0.00 0.00 3.85
223 224 4.767255 AAGGCTCGCTGCTTCCCG 62.767 66.667 0.00 0.00 42.39 5.14
224 225 2.821810 GAAGGCTCGCTGCTTCCC 60.822 66.667 0.00 0.00 42.39 3.97
225 226 1.028868 ATTGAAGGCTCGCTGCTTCC 61.029 55.000 0.00 0.00 42.39 3.46
226 227 1.328986 GTATTGAAGGCTCGCTGCTTC 59.671 52.381 0.00 0.00 42.39 3.86
227 228 1.065854 AGTATTGAAGGCTCGCTGCTT 60.066 47.619 0.00 0.00 42.39 3.91
228 229 0.539051 AGTATTGAAGGCTCGCTGCT 59.461 50.000 0.00 0.00 42.39 4.24
229 230 0.933796 GAGTATTGAAGGCTCGCTGC 59.066 55.000 0.00 0.00 41.94 5.25
230 231 1.203928 CGAGTATTGAAGGCTCGCTG 58.796 55.000 7.92 0.00 44.03 5.18
231 232 3.650409 CGAGTATTGAAGGCTCGCT 57.350 52.632 7.92 0.00 44.03 4.93
234 235 0.806102 TGCGCGAGTATTGAAGGCTC 60.806 55.000 12.10 0.00 0.00 4.70
235 236 1.084370 GTGCGCGAGTATTGAAGGCT 61.084 55.000 12.10 0.00 0.00 4.58
236 237 1.348594 GTGCGCGAGTATTGAAGGC 59.651 57.895 12.10 0.00 0.00 4.35
237 238 0.370273 GTGTGCGCGAGTATTGAAGG 59.630 55.000 12.10 0.00 0.00 3.46
238 239 1.067693 TGTGTGCGCGAGTATTGAAG 58.932 50.000 12.10 0.00 0.00 3.02
239 240 1.503294 TTGTGTGCGCGAGTATTGAA 58.497 45.000 12.10 0.00 0.00 2.69
240 241 1.459209 CTTTGTGTGCGCGAGTATTGA 59.541 47.619 12.10 0.00 0.00 2.57
241 242 1.194547 ACTTTGTGTGCGCGAGTATTG 59.805 47.619 12.10 0.00 0.00 1.90
242 243 1.194547 CACTTTGTGTGCGCGAGTATT 59.805 47.619 12.10 0.00 40.06 1.89
243 244 0.790207 CACTTTGTGTGCGCGAGTAT 59.210 50.000 12.10 0.00 40.06 2.12
244 245 2.221676 CACTTTGTGTGCGCGAGTA 58.778 52.632 12.10 0.00 40.06 2.59
245 246 3.014036 CACTTTGTGTGCGCGAGT 58.986 55.556 12.10 0.00 40.06 4.18
255 256 0.393808 ACAGGAACCGCACACTTTGT 60.394 50.000 0.00 0.00 0.00 2.83
256 257 1.588674 TACAGGAACCGCACACTTTG 58.411 50.000 0.00 0.00 0.00 2.77
257 258 2.335316 TTACAGGAACCGCACACTTT 57.665 45.000 0.00 0.00 0.00 2.66
258 259 2.561478 ATTACAGGAACCGCACACTT 57.439 45.000 0.00 0.00 0.00 3.16
259 260 2.677037 GCTATTACAGGAACCGCACACT 60.677 50.000 0.00 0.00 0.00 3.55
260 261 1.664151 GCTATTACAGGAACCGCACAC 59.336 52.381 0.00 0.00 0.00 3.82
261 262 1.406341 GGCTATTACAGGAACCGCACA 60.406 52.381 0.00 0.00 0.00 4.57
262 263 1.296727 GGCTATTACAGGAACCGCAC 58.703 55.000 0.00 0.00 0.00 5.34
263 264 0.179094 CGGCTATTACAGGAACCGCA 60.179 55.000 0.00 0.00 33.46 5.69
264 265 2.601562 CGGCTATTACAGGAACCGC 58.398 57.895 0.00 0.00 33.46 5.68
265 266 0.878961 GGCGGCTATTACAGGAACCG 60.879 60.000 0.00 0.00 43.37 4.44
266 267 0.179468 TGGCGGCTATTACAGGAACC 59.821 55.000 11.43 0.00 0.00 3.62
267 268 1.296727 GTGGCGGCTATTACAGGAAC 58.703 55.000 11.43 0.00 0.00 3.62
268 269 0.179468 GGTGGCGGCTATTACAGGAA 59.821 55.000 11.43 0.00 0.00 3.36
269 270 1.692173 GGGTGGCGGCTATTACAGGA 61.692 60.000 11.43 0.00 0.00 3.86
270 271 1.227853 GGGTGGCGGCTATTACAGG 60.228 63.158 11.43 0.00 0.00 4.00
271 272 0.180406 AAGGGTGGCGGCTATTACAG 59.820 55.000 11.43 0.00 0.00 2.74
272 273 0.107410 CAAGGGTGGCGGCTATTACA 60.107 55.000 11.43 0.00 0.00 2.41
273 274 1.444917 GCAAGGGTGGCGGCTATTAC 61.445 60.000 11.43 0.00 0.00 1.89
274 275 1.153046 GCAAGGGTGGCGGCTATTA 60.153 57.895 11.43 0.00 0.00 0.98
275 276 2.440247 GCAAGGGTGGCGGCTATT 60.440 61.111 11.43 0.00 0.00 1.73
276 277 4.506255 GGCAAGGGTGGCGGCTAT 62.506 66.667 11.43 0.00 40.97 2.97
283 284 4.659172 TTGGCTCGGCAAGGGTGG 62.659 66.667 1.42 0.00 0.00 4.61
296 297 5.043189 ACTTTTAACTTAGCGATGTTGGC 57.957 39.130 8.11 0.00 0.00 4.52
322 323 2.110578 GGATTGGGGTTCAGGGATTTG 58.889 52.381 0.00 0.00 0.00 2.32
337 338 1.407437 CCGAAGAGGGAAGGTGGATTG 60.407 57.143 0.00 0.00 35.97 2.67
339 340 0.252742 ACCGAAGAGGGAAGGTGGAT 60.253 55.000 0.00 0.00 46.96 3.41
355 356 4.202111 GGATGGGATAAATTGACCAAACCG 60.202 45.833 0.00 0.00 36.44 4.44
380 381 0.251916 TGGGATCGGTGTCATTGGAC 59.748 55.000 0.00 0.00 44.57 4.02
409 410 1.260544 ACCGGTACTGGTGGAGTAAC 58.739 55.000 25.96 0.00 41.85 2.50
424 425 3.133003 AGATTGGTACTCTCATCAACCGG 59.867 47.826 0.00 0.00 34.60 5.28
426 427 4.407296 AGGAGATTGGTACTCTCATCAACC 59.593 45.833 11.48 7.25 40.78 3.77
436 437 4.551671 AGCTATGTGAGGAGATTGGTACT 58.448 43.478 0.00 0.00 0.00 2.73
439 440 4.036518 AGAAGCTATGTGAGGAGATTGGT 58.963 43.478 0.00 0.00 0.00 3.67
454 455 7.820386 TCGTGTTTTGATATAACCAAGAAGCTA 59.180 33.333 0.00 0.00 0.00 3.32
485 486 0.603065 AAGCAATCCCGACCTTTTGC 59.397 50.000 0.00 0.00 43.64 3.68
487 488 0.603065 GCAAGCAATCCCGACCTTTT 59.397 50.000 0.00 0.00 0.00 2.27
506 507 5.390613 AGAAATTTGGTTAAATCAGTCGCG 58.609 37.500 0.00 0.00 35.50 5.87
511 512 6.589907 CGGGGAAAGAAATTTGGTTAAATCAG 59.410 38.462 0.00 0.00 35.50 2.90
516 517 4.894114 TGTCGGGGAAAGAAATTTGGTTAA 59.106 37.500 0.00 0.00 0.00 2.01
529 531 3.013921 GTTGCTATCAATGTCGGGGAAA 58.986 45.455 0.00 0.00 34.29 3.13
547 549 0.995024 AGGGATGGGTTGAGAGGTTG 59.005 55.000 0.00 0.00 0.00 3.77
549 551 1.566298 GCAGGGATGGGTTGAGAGGT 61.566 60.000 0.00 0.00 0.00 3.85
595 597 4.379918 GCAAGAAGCCAGGAGTTTGAATAC 60.380 45.833 0.00 0.00 37.23 1.89
640 642 1.129058 AAGGGCGTAGATACCTTGGG 58.871 55.000 0.00 0.00 42.71 4.12
654 656 0.798776 CTCACACGAATCACAAGGGC 59.201 55.000 0.00 0.00 0.00 5.19
667 669 2.162681 CAGATTTTGGGGGTCTCACAC 58.837 52.381 0.00 0.00 0.00 3.82
674 676 1.077169 GGTCCTTCAGATTTTGGGGGT 59.923 52.381 0.00 0.00 0.00 4.95
679 681 1.740025 GCCGAGGTCCTTCAGATTTTG 59.260 52.381 0.00 0.00 0.00 2.44
697 699 0.595095 CAAGTGCAGTGAGGAAAGCC 59.405 55.000 0.00 0.00 0.00 4.35
727 729 5.931441 AGAACAAGTCTGCAGTTATGTTC 57.069 39.130 31.08 31.08 44.19 3.18
733 735 6.699575 ATAAACAAGAACAAGTCTGCAGTT 57.300 33.333 14.67 0.00 36.40 3.16
740 742 8.169268 CGGACAGATAATAAACAAGAACAAGTC 58.831 37.037 0.00 0.00 0.00 3.01
770 772 0.109723 TTGGCATTATACGAGGGGCC 59.890 55.000 0.00 0.00 41.70 5.80
772 774 3.703001 ATCTTGGCATTATACGAGGGG 57.297 47.619 0.00 0.00 0.00 4.79
773 775 3.189287 GCAATCTTGGCATTATACGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
807 809 2.564721 GCAACCACACAAGGGGCTC 61.565 63.158 0.00 0.00 32.40 4.70
808 810 2.521708 GCAACCACACAAGGGGCT 60.522 61.111 0.00 0.00 32.40 5.19
814 816 3.334691 GCTACTATCTGCAACCACACAA 58.665 45.455 0.00 0.00 0.00 3.33
817 819 2.093500 CAGGCTACTATCTGCAACCACA 60.093 50.000 0.00 0.00 0.00 4.17
826 828 5.102953 TCAAATGTTGCAGGCTACTATCT 57.897 39.130 7.33 0.00 0.00 1.98
827 829 6.382869 AATCAAATGTTGCAGGCTACTATC 57.617 37.500 7.33 0.00 0.00 2.08
828 830 6.780457 AAATCAAATGTTGCAGGCTACTAT 57.220 33.333 7.33 0.00 0.00 2.12
829 831 6.208402 TCAAAATCAAATGTTGCAGGCTACTA 59.792 34.615 7.33 0.00 0.00 1.82
830 832 5.010922 TCAAAATCAAATGTTGCAGGCTACT 59.989 36.000 7.33 0.00 0.00 2.57
831 833 5.229423 TCAAAATCAAATGTTGCAGGCTAC 58.771 37.500 0.00 0.00 0.00 3.58
832 834 5.465532 TCAAAATCAAATGTTGCAGGCTA 57.534 34.783 0.00 0.00 0.00 3.93
833 835 4.339872 TCAAAATCAAATGTTGCAGGCT 57.660 36.364 0.00 0.00 0.00 4.58
834 836 4.093850 GGATCAAAATCAAATGTTGCAGGC 59.906 41.667 0.00 0.00 33.21 4.85
835 837 4.327898 CGGATCAAAATCAAATGTTGCAGG 59.672 41.667 0.00 0.00 33.21 4.85
872 874 9.163899 CAGTAGAGAAAAGTATAGTTTTTCCCC 57.836 37.037 17.32 6.85 42.63 4.81
926 928 2.441001 CTCTAACTGGGCTTGGATCCAT 59.559 50.000 17.06 0.00 31.95 3.41
940 942 1.903183 GGAACTGGGCTGACTCTAACT 59.097 52.381 0.00 0.00 0.00 2.24
1006 1009 3.576648 GTTTCTCTCTTCCGGTGTGTAG 58.423 50.000 0.00 0.00 0.00 2.74
1053 1056 0.869454 CGAGCTGCACGAGATCCTTC 60.869 60.000 14.25 0.00 33.11 3.46
1173 1176 0.530870 GGCGGAAGGGAGAATCGAAG 60.531 60.000 0.00 0.00 34.37 3.79
1280 1283 1.141881 AGCGGAATCACTACGGCAG 59.858 57.895 0.00 0.00 35.39 4.85
1297 1300 3.366396 TCTGGTCCTAAGTAGGCTTCAG 58.634 50.000 0.00 7.15 43.31 3.02
1331 1334 1.476891 GTACAGACGATTGCTCCAGGA 59.523 52.381 0.00 0.00 0.00 3.86
1353 1356 1.889829 ACTCCAGAGTGCAGACTACAC 59.110 52.381 0.00 0.00 40.75 2.90
1384 1392 2.094182 TCGGAAAAGAGACGGAATGGAG 60.094 50.000 0.00 0.00 0.00 3.86
1402 1410 3.458189 AGGATCAATTCTACGCTTTCGG 58.542 45.455 0.00 0.00 40.69 4.30
1430 1438 0.039035 TTCCCAACACCCCATACTGC 59.961 55.000 0.00 0.00 0.00 4.40
1521 1529 7.036829 GTCCTAAACAAAACTAAACAAGGCAA 58.963 34.615 0.00 0.00 0.00 4.52
1545 1555 0.037232 GGCTACAAAGTCTCGGCAGT 60.037 55.000 0.00 0.00 0.00 4.40
1579 1589 5.527951 TCTTACATGTGGTTCAACAAATGC 58.472 37.500 9.11 0.00 39.24 3.56
1608 1618 3.388024 GCATACATCCAGAAGTCCACCTA 59.612 47.826 0.00 0.00 0.00 3.08
1661 1671 6.690194 AATGGCTAAATCTGTCAGATTGTC 57.310 37.500 25.30 16.86 43.67 3.18
1664 1674 7.395489 ACTCAAAATGGCTAAATCTGTCAGATT 59.605 33.333 20.33 20.33 46.22 2.40
1729 1739 8.612619 CACTACTATGTAAATAACCTGCAAAGG 58.387 37.037 0.00 0.00 0.00 3.11
1935 1945 2.868583 CCATCATGCAGTTCCTTACTCG 59.131 50.000 0.00 0.00 33.85 4.18
1981 1992 9.591792 CTCTAATCAGTGATTTGTCATCAAGTA 57.408 33.333 22.90 0.44 33.95 2.24
2098 2141 8.142994 TGAGGCTTGAAAAACGATCTTATATC 57.857 34.615 0.00 0.00 0.00 1.63
2120 2163 3.441101 TCCCTCCGTCCCATAATATGAG 58.559 50.000 1.10 0.00 0.00 2.90
2121 2164 3.181410 ACTCCCTCCGTCCCATAATATGA 60.181 47.826 1.10 0.00 0.00 2.15
2122 2165 3.173965 ACTCCCTCCGTCCCATAATATG 58.826 50.000 0.00 0.00 0.00 1.78
2123 2166 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2124 2167 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2125 2168 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2126 2169 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2127 2170 2.767960 GTTTTACTCCCTCCGTCCCATA 59.232 50.000 0.00 0.00 0.00 2.74
2128 2171 1.558294 GTTTTACTCCCTCCGTCCCAT 59.442 52.381 0.00 0.00 0.00 4.00
2129 2172 0.978907 GTTTTACTCCCTCCGTCCCA 59.021 55.000 0.00 0.00 0.00 4.37
2130 2173 0.978907 TGTTTTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
2131 2174 4.476628 TTATGTTTTACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
2132 2175 4.874396 CCTTTATGTTTTACTCCCTCCGTC 59.126 45.833 0.00 0.00 0.00 4.79
2133 2176 4.324022 CCCTTTATGTTTTACTCCCTCCGT 60.324 45.833 0.00 0.00 0.00 4.69
2134 2177 4.196971 CCCTTTATGTTTTACTCCCTCCG 58.803 47.826 0.00 0.00 0.00 4.63
2135 2178 4.533815 CCCCTTTATGTTTTACTCCCTCC 58.466 47.826 0.00 0.00 0.00 4.30
2136 2179 3.952323 GCCCCTTTATGTTTTACTCCCTC 59.048 47.826 0.00 0.00 0.00 4.30
2137 2180 3.335484 TGCCCCTTTATGTTTTACTCCCT 59.665 43.478 0.00 0.00 0.00 4.20
2138 2181 3.703921 TGCCCCTTTATGTTTTACTCCC 58.296 45.455 0.00 0.00 0.00 4.30
2139 2182 6.127101 AGTATGCCCCTTTATGTTTTACTCC 58.873 40.000 0.00 0.00 0.00 3.85
2140 2183 7.991460 ACTAGTATGCCCCTTTATGTTTTACTC 59.009 37.037 0.00 0.00 0.00 2.59
2141 2184 7.773690 CACTAGTATGCCCCTTTATGTTTTACT 59.226 37.037 0.00 0.00 0.00 2.24
2142 2185 7.771826 TCACTAGTATGCCCCTTTATGTTTTAC 59.228 37.037 0.00 0.00 0.00 2.01
2143 2186 7.863722 TCACTAGTATGCCCCTTTATGTTTTA 58.136 34.615 0.00 0.00 0.00 1.52
2144 2187 6.727394 TCACTAGTATGCCCCTTTATGTTTT 58.273 36.000 0.00 0.00 0.00 2.43
2145 2188 6.069615 ACTCACTAGTATGCCCCTTTATGTTT 60.070 38.462 0.00 0.00 32.84 2.83
2146 2189 5.428783 ACTCACTAGTATGCCCCTTTATGTT 59.571 40.000 0.00 0.00 32.84 2.71
2147 2190 4.969359 ACTCACTAGTATGCCCCTTTATGT 59.031 41.667 0.00 0.00 32.84 2.29
2148 2191 5.552870 ACTCACTAGTATGCCCCTTTATG 57.447 43.478 0.00 0.00 32.84 1.90
2149 2192 6.576778 AAACTCACTAGTATGCCCCTTTAT 57.423 37.500 0.00 0.00 33.75 1.40
2150 2193 6.177610 CAAAACTCACTAGTATGCCCCTTTA 58.822 40.000 0.00 0.00 33.75 1.85
2151 2194 4.929146 AAACTCACTAGTATGCCCCTTT 57.071 40.909 0.00 0.00 33.75 3.11
2152 2195 4.042934 ACAAAACTCACTAGTATGCCCCTT 59.957 41.667 0.00 0.00 33.75 3.95
2153 2196 3.587506 ACAAAACTCACTAGTATGCCCCT 59.412 43.478 0.00 0.00 33.75 4.79
2154 2197 3.951663 ACAAAACTCACTAGTATGCCCC 58.048 45.455 0.00 0.00 33.75 5.80
2155 2198 5.001232 TCAACAAAACTCACTAGTATGCCC 58.999 41.667 0.00 0.00 33.75 5.36
2156 2199 6.554334 TTCAACAAAACTCACTAGTATGCC 57.446 37.500 0.00 0.00 33.75 4.40
2157 2200 9.463443 AATTTTCAACAAAACTCACTAGTATGC 57.537 29.630 0.00 0.00 34.24 3.14
2164 2207 8.682710 TGCTAGTAATTTTCAACAAAACTCACT 58.317 29.630 0.00 0.00 34.24 3.41
2165 2208 8.850454 TGCTAGTAATTTTCAACAAAACTCAC 57.150 30.769 0.00 0.00 34.24 3.51
2166 2209 9.462174 CATGCTAGTAATTTTCAACAAAACTCA 57.538 29.630 0.00 0.00 34.24 3.41
2167 2210 8.915654 CCATGCTAGTAATTTTCAACAAAACTC 58.084 33.333 0.00 0.00 34.24 3.01
2168 2211 7.872483 CCCATGCTAGTAATTTTCAACAAAACT 59.128 33.333 0.00 0.00 34.24 2.66
2169 2212 7.360017 GCCCATGCTAGTAATTTTCAACAAAAC 60.360 37.037 0.00 0.00 32.45 2.43
2170 2213 6.648725 GCCCATGCTAGTAATTTTCAACAAAA 59.351 34.615 0.00 0.00 33.46 2.44
2171 2214 6.162777 GCCCATGCTAGTAATTTTCAACAAA 58.837 36.000 0.00 0.00 33.53 2.83
2172 2215 5.337169 GGCCCATGCTAGTAATTTTCAACAA 60.337 40.000 0.00 0.00 37.74 2.83
2173 2216 4.159506 GGCCCATGCTAGTAATTTTCAACA 59.840 41.667 0.00 0.00 37.74 3.33
2174 2217 4.159506 TGGCCCATGCTAGTAATTTTCAAC 59.840 41.667 0.00 0.00 37.74 3.18
2175 2218 4.348486 TGGCCCATGCTAGTAATTTTCAA 58.652 39.130 0.00 0.00 37.74 2.69
2176 2219 3.974719 TGGCCCATGCTAGTAATTTTCA 58.025 40.909 0.00 0.00 37.74 2.69
2177 2220 5.770162 AGTATGGCCCATGCTAGTAATTTTC 59.230 40.000 13.12 0.00 35.20 2.29
2178 2221 5.705400 AGTATGGCCCATGCTAGTAATTTT 58.295 37.500 13.12 0.00 35.20 1.82
2179 2222 5.324832 AGTATGGCCCATGCTAGTAATTT 57.675 39.130 13.12 0.00 35.20 1.82
2180 2223 6.044404 AGTTAGTATGGCCCATGCTAGTAATT 59.956 38.462 19.07 3.81 39.44 1.40
2181 2224 5.548056 AGTTAGTATGGCCCATGCTAGTAAT 59.452 40.000 19.07 4.92 39.44 1.89
2182 2225 4.905456 AGTTAGTATGGCCCATGCTAGTAA 59.095 41.667 19.07 6.54 39.44 2.24
2183 2226 4.489737 AGTTAGTATGGCCCATGCTAGTA 58.510 43.478 19.07 5.53 39.44 1.82
2184 2227 3.318313 AGTTAGTATGGCCCATGCTAGT 58.682 45.455 19.07 9.98 39.44 2.57
2185 2228 4.528596 AGTAGTTAGTATGGCCCATGCTAG 59.471 45.833 19.07 0.00 39.44 3.42
2186 2229 4.489737 AGTAGTTAGTATGGCCCATGCTA 58.510 43.478 16.54 16.54 37.86 3.49
2187 2230 3.318313 AGTAGTTAGTATGGCCCATGCT 58.682 45.455 18.67 18.67 39.84 3.79
2188 2231 3.771577 AGTAGTTAGTATGGCCCATGC 57.228 47.619 6.46 4.79 0.00 4.06
2189 2232 7.450074 TGATTTAGTAGTTAGTATGGCCCATG 58.550 38.462 6.46 0.00 0.00 3.66
2190 2233 7.626999 TGATTTAGTAGTTAGTATGGCCCAT 57.373 36.000 0.00 0.00 0.00 4.00
2191 2234 7.291416 TCATGATTTAGTAGTTAGTATGGCCCA 59.709 37.037 0.00 0.00 0.00 5.36
2192 2235 7.676947 TCATGATTTAGTAGTTAGTATGGCCC 58.323 38.462 0.00 0.00 0.00 5.80
2193 2236 8.989980 GTTCATGATTTAGTAGTTAGTATGGCC 58.010 37.037 0.00 0.00 0.00 5.36
2194 2237 9.542462 TGTTCATGATTTAGTAGTTAGTATGGC 57.458 33.333 0.00 0.00 0.00 4.40
2255 2298 4.023291 TCCAGTGGAAAATAGCAATTCCC 58.977 43.478 10.20 0.00 43.66 3.97
2257 2300 4.949856 TCCTCCAGTGGAAAATAGCAATTC 59.050 41.667 14.17 0.00 32.39 2.17
2270 2313 4.494091 AGTTCACATAATCCTCCAGTGG 57.506 45.455 1.40 1.40 0.00 4.00
2300 2344 8.691661 AGTTATAAGAAAGAAAAGAAGCACCA 57.308 30.769 0.00 0.00 0.00 4.17
2353 2397 6.497640 TCACATCCTCTATATATCTGCAGGT 58.502 40.000 15.13 9.93 0.00 4.00
2562 2606 7.593644 CACAATAAGCAGGTTTTTGTACCTTAC 59.406 37.037 17.42 0.00 46.39 2.34
2575 2619 3.199071 TCGGGATTACACAATAAGCAGGT 59.801 43.478 0.00 0.00 0.00 4.00
2606 2650 1.208642 GAAAAGCGTGTGCACCTTGC 61.209 55.000 15.69 15.24 46.23 4.01
2607 2651 0.929824 CGAAAAGCGTGTGCACCTTG 60.930 55.000 15.69 4.98 46.23 3.61
2626 2670 3.896648 TTCACGCCAAACTTGAATCTC 57.103 42.857 0.00 0.00 32.04 2.75
2641 2685 7.600752 ACCCACATTTTATTGGTTAAATTCACG 59.399 33.333 0.00 0.00 30.03 4.35
2712 2756 8.364142 GCCATGTAACCTAAAATTATGCCATTA 58.636 33.333 0.00 0.00 0.00 1.90
2751 2795 9.788960 GATTTAACTTTGACCATCAATTAGACC 57.211 33.333 0.00 0.00 36.11 3.85
2797 2841 1.421646 CTCCCTCCAACTCCACAAAGT 59.578 52.381 0.00 0.00 0.00 2.66
2799 2843 1.518367 ACTCCCTCCAACTCCACAAA 58.482 50.000 0.00 0.00 0.00 2.83
2802 2846 1.939980 ACTACTCCCTCCAACTCCAC 58.060 55.000 0.00 0.00 0.00 4.02
2809 2853 6.738635 TCTTGTAAGATAACTACTCCCTCCA 58.261 40.000 0.00 0.00 0.00 3.86
2811 2855 7.506261 TCCATCTTGTAAGATAACTACTCCCTC 59.494 40.741 6.79 0.00 43.65 4.30
2818 2862 7.622081 TCCAAGGTCCATCTTGTAAGATAACTA 59.378 37.037 6.79 0.00 43.65 2.24
2821 2865 6.884472 TCCAAGGTCCATCTTGTAAGATAA 57.116 37.500 6.79 0.00 43.65 1.75
2875 2919 7.149973 AGTACATAGCTGTCGTCTGTTTAAAA 58.850 34.615 0.00 0.00 36.79 1.52
2876 2920 6.684686 AGTACATAGCTGTCGTCTGTTTAAA 58.315 36.000 0.00 0.00 36.79 1.52
2880 2924 6.452494 AATAGTACATAGCTGTCGTCTGTT 57.548 37.500 0.00 0.00 36.79 3.16
2928 2972 9.574516 AACAATCCTAAGAATGAAACAGTAGTT 57.425 29.630 0.00 0.00 40.40 2.24
3016 3060 5.319043 TGGACCAAATTCTAACTGGACTT 57.681 39.130 0.00 0.00 34.16 3.01
3114 3158 7.782168 TGAAACCTTGGCAATATATATTGGTGA 59.218 33.333 28.45 9.58 42.46 4.02
3117 3161 8.090214 CCTTGAAACCTTGGCAATATATATTGG 58.910 37.037 28.45 17.97 42.46 3.16
3138 3183 7.466804 AGTTAATCCATGTTTAGTTCCCTTGA 58.533 34.615 0.00 0.00 0.00 3.02
3151 3196 7.750229 ATCATGCGAAATAGTTAATCCATGT 57.250 32.000 0.00 0.00 32.79 3.21
3156 3201 9.935682 TTCAGAAATCATGCGAAATAGTTAATC 57.064 29.630 0.00 0.00 0.00 1.75
3165 3210 9.720667 CTTGTATTATTCAGAAATCATGCGAAA 57.279 29.630 0.00 0.00 0.00 3.46
3166 3211 8.892723 ACTTGTATTATTCAGAAATCATGCGAA 58.107 29.630 0.00 0.00 0.00 4.70
3187 3232 8.038944 CCACATACTACATAACTAACCACTTGT 58.961 37.037 0.00 0.00 0.00 3.16
3202 3247 2.737881 GGGCCGGCCACATACTACA 61.738 63.158 44.46 0.00 37.98 2.74
3228 3273 2.885135 TTGATCATTGTGACAGCCCT 57.115 45.000 0.00 0.00 0.00 5.19
3291 3336 6.579292 GTCTGCAAGTGTCGAGATATATGTAC 59.421 42.308 0.00 0.00 33.76 2.90
3294 3339 5.523369 TGTCTGCAAGTGTCGAGATATATG 58.477 41.667 0.00 0.00 33.76 1.78
3324 3369 3.704800 AAGCCTTCTTTACCCAGAGAC 57.295 47.619 0.00 0.00 0.00 3.36
3329 3374 4.717279 ACACTAAAGCCTTCTTTACCCA 57.283 40.909 0.00 0.00 42.21 4.51
3540 3585 4.265893 TGGATAACACATTACCGCATTGT 58.734 39.130 0.00 0.00 0.00 2.71
3547 3592 7.971722 GTGGTACAATTTGGATAACACATTACC 59.028 37.037 9.26 5.07 44.16 2.85
3575 3620 6.951198 ACCCATATGTATTCCACTCAAAACAA 59.049 34.615 1.24 0.00 0.00 2.83
3827 3872 1.165270 CACCACCGAAGAATGTTCCC 58.835 55.000 0.00 0.00 0.00 3.97
3868 3913 6.915349 GGTAACAATTGCTAACATTGGTACA 58.085 36.000 18.07 0.00 45.35 2.90
3919 3964 6.149474 CCTGAAAACAGGAGGTACAATACTTG 59.851 42.308 10.33 0.00 45.00 3.16
4018 4063 1.616159 ATCAACGGGTCCTGGTTTTG 58.384 50.000 1.89 0.00 0.00 2.44
4055 4100 3.714798 AGAAACCAACCTACTCTTCCACA 59.285 43.478 0.00 0.00 0.00 4.17
4056 4101 4.202326 TGAGAAACCAACCTACTCTTCCAC 60.202 45.833 0.00 0.00 0.00 4.02
4096 4146 1.532868 CACCAACAGCTTGCACTCTAC 59.467 52.381 0.00 0.00 0.00 2.59
4115 4165 7.281841 TCATATCATCCATGTTAGCAAACTCA 58.718 34.615 0.00 0.00 36.51 3.41
4189 4239 7.719483 CCAATGCTGGTATTCATCATAACTTT 58.281 34.615 0.00 0.00 38.00 2.66
4312 4362 5.182760 ACAAGATGCTCTAGCCAAGAAAAAG 59.817 40.000 0.00 0.00 41.18 2.27
4342 4393 2.715532 AAGACAAGCTCGAAGCCGCA 62.716 55.000 0.00 0.00 43.77 5.69
4390 4441 9.606631 CACTTCCTAATGAAATTTCTAGCTACT 57.393 33.333 18.64 0.00 37.87 2.57
4450 4501 6.154021 AGGCCTCGATTTAGTTAGAAGTTGTA 59.846 38.462 0.00 0.00 0.00 2.41
4671 4734 2.339728 TGCGCAAAATTAAACCGAGG 57.660 45.000 8.16 0.00 0.00 4.63
4687 4750 3.338818 AACACATTCACAGTTCTTGCG 57.661 42.857 0.00 0.00 0.00 4.85
4799 4863 8.100791 AGTGAAATACCAAAGCAGTTGATAGTA 58.899 33.333 1.93 0.00 39.87 1.82
4885 4949 1.202348 GCCTACAACAATGCCTGGTTC 59.798 52.381 0.00 0.00 0.00 3.62
4909 4973 1.601477 TGTCTCCGGTGCACTCGTA 60.601 57.895 17.98 4.84 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.