Multiple sequence alignment - TraesCS6A01G244500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G244500 chr6A 100.000 2450 0 0 1 2450 455823203 455820754 0.000000e+00 4525.0
1 TraesCS6A01G244500 chr6A 86.417 1016 84 27 915 1902 466088286 466089275 0.000000e+00 1062.0
2 TraesCS6A01G244500 chr6A 88.393 112 10 2 2076 2184 466089526 466089637 5.500000e-27 132.0
3 TraesCS6A01G244500 chr6A 89.041 73 2 6 1978 2045 466089383 466089454 4.340000e-13 86.1
4 TraesCS6A01G244500 chr6D 87.023 1572 140 31 1 1527 318261904 318260352 0.000000e+00 1714.0
5 TraesCS6A01G244500 chr6D 87.388 1007 82 23 915 1902 327343516 327344496 0.000000e+00 1114.0
6 TraesCS6A01G244500 chr6D 87.500 112 11 2 2076 2184 327347923 327348034 2.560000e-25 126.0
7 TraesCS6A01G244500 chr6B 94.385 1033 34 8 904 1925 505908459 505909478 0.000000e+00 1565.0
8 TraesCS6A01G244500 chr6B 88.393 1008 81 22 915 1902 494093906 494092915 0.000000e+00 1181.0
9 TraesCS6A01G244500 chr6B 85.915 923 93 18 1 900 505886102 505887010 0.000000e+00 950.0
10 TraesCS6A01G244500 chr6B 89.847 522 27 10 1946 2450 505909460 505909972 0.000000e+00 647.0
11 TraesCS6A01G244500 chr2B 91.209 182 10 3 1185 1365 212347279 212347103 2.430000e-60 243.0
12 TraesCS6A01G244500 chr1B 93.038 158 11 0 1208 1365 317589479 317589636 5.270000e-57 231.0
13 TraesCS6A01G244500 chr1B 91.925 161 13 0 1205 1365 665070783 665070943 2.450000e-55 226.0
14 TraesCS6A01G244500 chr7B 92.500 160 12 0 1206 1365 621800464 621800305 1.890000e-56 230.0
15 TraesCS6A01G244500 chr4A 78.390 236 37 12 978 1202 246255261 246255029 9.130000e-30 141.0
16 TraesCS6A01G244500 chr3A 75.940 133 21 7 42 167 743351074 743350946 9.460000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G244500 chr6A 455820754 455823203 2449 True 4525.0 4525 100.000000 1 2450 1 chr6A.!!$R1 2449
1 TraesCS6A01G244500 chr6A 466088286 466089637 1351 False 426.7 1062 87.950333 915 2184 3 chr6A.!!$F1 1269
2 TraesCS6A01G244500 chr6D 318260352 318261904 1552 True 1714.0 1714 87.023000 1 1527 1 chr6D.!!$R1 1526
3 TraesCS6A01G244500 chr6D 327343516 327348034 4518 False 620.0 1114 87.444000 915 2184 2 chr6D.!!$F1 1269
4 TraesCS6A01G244500 chr6B 494092915 494093906 991 True 1181.0 1181 88.393000 915 1902 1 chr6B.!!$R1 987
5 TraesCS6A01G244500 chr6B 505908459 505909972 1513 False 1106.0 1565 92.116000 904 2450 2 chr6B.!!$F2 1546
6 TraesCS6A01G244500 chr6B 505886102 505887010 908 False 950.0 950 85.915000 1 900 1 chr6B.!!$F1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.036577 CAGTTGTCCTCCTCCTGCAG 60.037 60.0 6.78 6.78 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2051 1.071385 AGCAGCAGAGTGTAAGTGCTT 59.929 47.619 0.0 0.0 45.31 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.036577 CAGTTGTCCTCCTCCTGCAG 60.037 60.000 6.78 6.78 0.00 4.41
77 78 1.165270 GGCAAGTGTAACAAGCGGAT 58.835 50.000 0.00 0.00 41.43 4.18
144 158 3.445096 ACTGTGAGCCAGGCAAATATTTC 59.555 43.478 15.80 0.26 46.06 2.17
157 171 5.420739 GGCAAATATTTCACACTTTAGGGGA 59.579 40.000 0.00 0.00 0.00 4.81
182 197 4.923942 CCGCCAGATGCCGCTCAT 62.924 66.667 0.00 0.00 38.32 2.90
210 225 1.126488 ATCGAGTCAGACCATGGCAT 58.874 50.000 13.04 0.00 35.29 4.40
215 230 1.561076 AGTCAGACCATGGCATAAGCA 59.439 47.619 13.04 0.00 44.61 3.91
231 246 5.277683 GCATAAGCACTGATATGTGGACTTG 60.278 44.000 0.00 0.00 41.58 3.16
252 267 2.551071 GGCAGTATAGACTCCATTGGCC 60.551 54.545 0.00 0.00 31.73 5.36
302 317 4.011023 ACCTCGGTATCTCTATTCATCGG 58.989 47.826 0.00 0.00 0.00 4.18
307 322 3.118956 GGTATCTCTATTCATCGGGGCAG 60.119 52.174 0.00 0.00 0.00 4.85
310 325 0.106708 TCTATTCATCGGGGCAGTGC 59.893 55.000 6.55 6.55 0.00 4.40
331 346 0.250209 GTGCCGGAGATGCATGATCT 60.250 55.000 5.05 0.00 44.78 2.75
352 367 0.343372 TAGGAGGGCCATGAAGGAGT 59.657 55.000 6.18 0.00 41.22 3.85
362 377 0.040058 ATGAAGGAGTTGCATGGCCA 59.960 50.000 8.56 8.56 0.00 5.36
363 378 0.040058 TGAAGGAGTTGCATGGCCAT 59.960 50.000 14.09 14.09 0.00 4.40
375 390 2.366266 GCATGGCCATATGTCCATTGTT 59.634 45.455 20.30 0.00 40.88 2.83
376 391 3.181463 GCATGGCCATATGTCCATTGTTT 60.181 43.478 20.30 0.00 40.88 2.83
392 407 4.601621 TTGTTTGTTGTTCGTCGATCAA 57.398 36.364 13.40 13.40 0.00 2.57
420 435 2.723209 TGTACTGTTCGAGTGTTCACG 58.277 47.619 0.00 0.00 35.96 4.35
455 470 2.417924 CCAGATCAACGAGAAGTGGAGG 60.418 54.545 0.00 0.00 35.99 4.30
461 476 0.763223 ACGAGAAGTGGAGGGGTGTT 60.763 55.000 0.00 0.00 0.00 3.32
465 480 2.885266 GAGAAGTGGAGGGGTGTTTTTC 59.115 50.000 0.00 0.00 0.00 2.29
485 500 3.599343 TCACTGAGAAACCATGAATCCG 58.401 45.455 0.00 0.00 0.00 4.18
490 505 0.101219 GAAACCATGAATCCGCCTGC 59.899 55.000 0.00 0.00 0.00 4.85
504 519 1.958902 GCCTGCCTGTCTCTCCAGAG 61.959 65.000 0.00 0.00 43.36 3.35
555 570 3.128589 CCAAACTATCAAACACCATCCGG 59.871 47.826 0.00 0.00 38.77 5.14
604 619 4.602259 CTGTGCGGGTCCGTGTGT 62.602 66.667 11.25 0.00 42.09 3.72
610 625 2.732658 GGGTCCGTGTGTCGAAGT 59.267 61.111 0.00 0.00 42.86 3.01
629 644 3.505386 AGTCATTCTCACCTCACTCTGT 58.495 45.455 0.00 0.00 0.00 3.41
670 686 2.881111 GGTTTCTTACCCCAAGCTCT 57.119 50.000 0.00 0.00 41.43 4.09
768 784 5.957842 AGAGAATGATTAGCCTAGACTCG 57.042 43.478 0.00 0.00 0.00 4.18
770 786 6.065374 AGAGAATGATTAGCCTAGACTCGAA 58.935 40.000 0.00 0.00 0.00 3.71
885 924 1.754803 TCATATGAACCGAACGAGGCT 59.245 47.619 1.98 0.00 33.69 4.58
890 929 0.319641 GAACCGAACGAGGCTTGAGT 60.320 55.000 9.20 0.00 33.69 3.41
935 988 0.108138 GCGTCCTGTGCTATTCCACT 60.108 55.000 0.00 0.00 36.68 4.00
968 1027 1.448540 CCTGAGCCCGTAACTGCTG 60.449 63.158 0.00 0.00 38.11 4.41
1254 1324 4.200283 GACGAGGAGGAGGCGCTG 62.200 72.222 7.64 0.00 0.00 5.18
1270 1340 2.611800 TGTGCCCCATCTGCCTCT 60.612 61.111 0.00 0.00 0.00 3.69
1624 1713 2.631062 TGTGTACAGGATTCTTGGACGT 59.369 45.455 6.65 0.00 0.00 4.34
1712 1803 4.362932 TTCTTCTAGCAGATCGTCACAG 57.637 45.455 0.00 0.00 0.00 3.66
1730 1821 0.037590 AGTTGGCCGCATTTGGTCTA 59.962 50.000 0.00 0.00 33.69 2.59
1741 1832 5.392919 CCGCATTTGGTCTATTTGATGAACA 60.393 40.000 0.00 0.00 0.00 3.18
1745 1836 7.487189 GCATTTGGTCTATTTGATGAACAAGAG 59.513 37.037 0.00 0.00 40.39 2.85
1784 1879 6.491062 TGAAGATAGCAAATTATGATGTGGGG 59.509 38.462 0.00 0.00 0.00 4.96
1794 1889 5.435686 TTATGATGTGGGGTAGCATATCC 57.564 43.478 0.00 0.00 42.76 2.59
1826 1925 2.930040 TCAGACGCCGATTCTGATTTTC 59.070 45.455 3.56 0.00 43.69 2.29
1879 1979 5.826601 TGAAAACACACTGCAAACATCTA 57.173 34.783 0.00 0.00 0.00 1.98
1902 2003 5.063880 AGTTCAAATCAGAAGCGGTTACTT 58.936 37.500 0.00 0.00 0.00 2.24
1904 2005 6.708949 AGTTCAAATCAGAAGCGGTTACTTAA 59.291 34.615 0.00 0.00 0.00 1.85
1910 2011 7.865706 ATCAGAAGCGGTTACTTAATGAAAT 57.134 32.000 0.00 0.00 32.37 2.17
1911 2012 7.303634 TCAGAAGCGGTTACTTAATGAAATC 57.696 36.000 0.00 0.00 0.00 2.17
1913 2014 7.389330 TCAGAAGCGGTTACTTAATGAAATCAA 59.611 33.333 0.00 0.00 0.00 2.57
1915 2016 6.811253 AGCGGTTACTTAATGAAATCAACA 57.189 33.333 0.00 0.00 0.00 3.33
1917 2018 6.430000 AGCGGTTACTTAATGAAATCAACAGT 59.570 34.615 0.00 0.00 0.00 3.55
1918 2019 7.040686 AGCGGTTACTTAATGAAATCAACAGTT 60.041 33.333 0.00 0.00 0.00 3.16
1920 2021 9.537848 CGGTTACTTAATGAAATCAACAGTTAC 57.462 33.333 0.00 0.00 0.00 2.50
1929 2030 7.639113 TGAAATCAACAGTTACTCTGGTTTT 57.361 32.000 4.38 0.67 42.00 2.43
1990 2124 4.095932 TGCTTGAGCTATTTTGCAGATCAG 59.904 41.667 4.44 0.00 39.41 2.90
2032 5352 3.758023 TGTTTCCTGTTCTGTGGCATATG 59.242 43.478 0.00 0.00 0.00 1.78
2036 5372 5.372343 TCCTGTTCTGTGGCATATGTATT 57.628 39.130 4.29 0.00 0.00 1.89
2041 5377 5.709631 TGTTCTGTGGCATATGTATTTGTGT 59.290 36.000 4.29 0.00 0.00 3.72
2061 5397 7.640597 TGTGTATTATGAGTACTAGCACAGT 57.359 36.000 0.00 0.00 41.62 3.55
2074 5441 3.632855 AGCACAGTTTGAAGCTTAAGC 57.367 42.857 20.09 20.09 42.49 3.09
2092 5462 8.722480 GCTTAAGCTTCCCAAAATATCATTTT 57.278 30.769 20.38 0.00 38.21 1.82
2179 5549 3.213506 CTTGTGTGAACAGGTCATGGAA 58.786 45.455 0.00 0.00 38.90 3.53
2188 5558 4.170468 ACAGGTCATGGAACTCAAGTTT 57.830 40.909 0.00 0.00 38.56 2.66
2189 5559 4.137543 ACAGGTCATGGAACTCAAGTTTC 58.862 43.478 0.00 0.00 38.56 2.78
2190 5560 4.141390 ACAGGTCATGGAACTCAAGTTTCT 60.141 41.667 2.98 0.00 38.56 2.52
2191 5561 4.823989 CAGGTCATGGAACTCAAGTTTCTT 59.176 41.667 2.98 0.00 38.56 2.52
2192 5562 4.823989 AGGTCATGGAACTCAAGTTTCTTG 59.176 41.667 9.67 9.67 39.01 3.02
2193 5563 4.022849 GGTCATGGAACTCAAGTTTCTTGG 60.023 45.833 13.98 3.87 38.50 3.61
2194 5564 4.580580 GTCATGGAACTCAAGTTTCTTGGT 59.419 41.667 13.98 4.39 38.50 3.67
2235 5605 0.994247 TCAACCTGTCATCCCATGCT 59.006 50.000 0.00 0.00 0.00 3.79
2282 5652 7.836685 AGACACTCAGGTCTGATCTTCTAATTA 59.163 37.037 0.75 0.00 46.02 1.40
2288 5658 7.286546 TCAGGTCTGATCTTCTAATTACAGGAG 59.713 40.741 0.00 0.00 34.14 3.69
2315 5685 8.965480 CAGAATTTACTCTGATGCCTCTTGCAA 61.965 40.741 0.00 0.00 45.52 4.08
2333 5703 6.705381 TCTTGCAAATGTACAAAAATTCCAGG 59.295 34.615 0.00 0.00 0.00 4.45
2377 5748 3.305608 GGCATTGGAGTTTTCCTCAACTG 60.306 47.826 0.00 0.00 44.36 3.16
2396 5767 2.235650 CTGTTTGCAGGATCAGAGGAGA 59.764 50.000 0.00 0.00 39.01 3.71
2410 5781 7.227116 GGATCAGAGGAGAATTCAAATTCAGAG 59.773 40.741 15.75 2.64 45.59 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.376553 GCAGGAGGAGGACAACTGC 60.377 63.158 0.00 0.00 46.24 4.40
39 40 0.036577 CTGCAGGAGGAGGACAACTG 60.037 60.000 5.57 0.00 0.00 3.16
58 59 1.135689 CATCCGCTTGTTACACTTGCC 60.136 52.381 0.00 0.00 0.00 4.52
77 78 3.415186 GGGCTCCAAGATCACCCA 58.585 61.111 0.00 0.00 40.52 4.51
144 158 0.678048 GCTGGCTCCCCTAAAGTGTG 60.678 60.000 0.00 0.00 0.00 3.82
167 182 1.170919 ATTCATGAGCGGCATCTGGC 61.171 55.000 1.45 0.00 43.74 4.85
181 196 4.405680 TGGTCTGACTCGATTACCATTCAT 59.594 41.667 7.85 0.00 35.34 2.57
182 197 3.767131 TGGTCTGACTCGATTACCATTCA 59.233 43.478 7.85 0.00 35.34 2.57
210 225 4.769688 CCAAGTCCACATATCAGTGCTTA 58.230 43.478 0.00 0.00 38.18 3.09
215 230 2.573462 ACTGCCAAGTCCACATATCAGT 59.427 45.455 0.00 0.00 26.77 3.41
231 246 2.551071 GGCCAATGGAGTCTATACTGCC 60.551 54.545 2.05 7.70 43.04 4.85
275 290 4.827835 TGAATAGAGATACCGAGGTTCCTG 59.172 45.833 0.00 0.00 0.00 3.86
318 333 3.055963 CCCTCCTACAGATCATGCATCTC 60.056 52.174 0.00 0.00 40.20 2.75
331 346 0.044092 TCCTTCATGGCCCTCCTACA 59.956 55.000 0.00 0.00 35.26 2.74
362 377 6.325919 ACGAACAACAAACAATGGACATAT 57.674 33.333 0.00 0.00 0.00 1.78
363 378 5.559225 CGACGAACAACAAACAATGGACATA 60.559 40.000 0.00 0.00 0.00 2.29
375 390 2.869801 AGCTTTGATCGACGAACAACAA 59.130 40.909 18.66 11.68 0.00 2.83
376 391 2.479837 AGCTTTGATCGACGAACAACA 58.520 42.857 18.66 10.18 0.00 3.33
392 407 3.990469 CACTCGAACAGTACATCAAGCTT 59.010 43.478 0.00 0.00 32.21 3.74
461 476 5.048782 CGGATTCATGGTTTCTCAGTGAAAA 60.049 40.000 0.00 0.00 45.10 2.29
465 480 2.096496 GCGGATTCATGGTTTCTCAGTG 59.904 50.000 0.00 0.00 0.00 3.66
485 500 1.958902 CTCTGGAGAGACAGGCAGGC 61.959 65.000 0.00 0.00 44.74 4.85
555 570 1.293924 CTTGTCGATGATGCTGGACC 58.706 55.000 0.00 0.00 0.00 4.46
601 616 3.246619 GAGGTGAGAATGACTTCGACAC 58.753 50.000 0.00 0.00 39.94 3.67
602 617 2.890945 TGAGGTGAGAATGACTTCGACA 59.109 45.455 0.00 0.00 29.12 4.35
604 619 3.157881 AGTGAGGTGAGAATGACTTCGA 58.842 45.455 0.00 0.00 29.12 3.71
610 625 5.264395 TCATACAGAGTGAGGTGAGAATGA 58.736 41.667 0.00 0.00 0.00 2.57
629 644 2.689983 TGAGACTGCAATCGCTCTCATA 59.310 45.455 0.00 0.00 41.81 2.15
634 649 0.108424 ACCTGAGACTGCAATCGCTC 60.108 55.000 0.00 0.00 39.64 5.03
663 679 2.681848 CCAACCTGCTATGAAGAGCTTG 59.318 50.000 0.00 0.00 43.27 4.01
668 684 0.107703 CGGCCAACCTGCTATGAAGA 60.108 55.000 2.24 0.00 0.00 2.87
670 686 1.077787 CCGGCCAACCTGCTATGAA 60.078 57.895 2.24 0.00 0.00 2.57
749 765 6.320494 TCTTCGAGTCTAGGCTAATCATTC 57.680 41.667 0.00 0.00 0.00 2.67
752 768 6.525578 TTTTCTTCGAGTCTAGGCTAATCA 57.474 37.500 0.00 0.00 0.00 2.57
860 899 5.744345 GCCTCGTTCGGTTCATATGATATAG 59.256 44.000 6.17 0.00 0.00 1.31
864 903 2.365617 AGCCTCGTTCGGTTCATATGAT 59.634 45.455 6.17 0.00 0.00 2.45
865 904 1.754803 AGCCTCGTTCGGTTCATATGA 59.245 47.619 0.00 0.00 0.00 2.15
866 905 2.225068 AGCCTCGTTCGGTTCATATG 57.775 50.000 0.00 0.00 0.00 1.78
1254 1324 1.147153 GTAGAGGCAGATGGGGCAC 59.853 63.158 0.00 0.00 35.46 5.01
1408 1487 3.190849 CACCGTCAGCGAGGCATG 61.191 66.667 0.00 0.00 41.33 4.06
1409 1488 4.457496 CCACCGTCAGCGAGGCAT 62.457 66.667 0.00 0.00 41.33 4.40
1624 1713 4.939439 TCGTAGTAACTACATGCAGTCTCA 59.061 41.667 0.00 0.00 36.83 3.27
1712 1803 1.102978 ATAGACCAAATGCGGCCAAC 58.897 50.000 2.24 0.00 0.00 3.77
1730 1821 8.025445 GCATTTACTGTCTCTTGTTCATCAAAT 58.975 33.333 0.00 0.00 35.48 2.32
1741 1832 3.678056 TCACGGCATTTACTGTCTCTT 57.322 42.857 0.00 0.00 0.00 2.85
1745 1836 4.025647 GCTATCTTCACGGCATTTACTGTC 60.026 45.833 0.00 0.00 0.00 3.51
1784 1879 9.757227 GTCTGATTAATAGGATGGATATGCTAC 57.243 37.037 0.00 0.00 39.60 3.58
1794 1889 4.174411 TCGGCGTCTGATTAATAGGATG 57.826 45.455 6.85 0.00 0.00 3.51
1826 1925 8.233190 ACAGCTCAAAGAAGAATAAAAATCGAG 58.767 33.333 0.00 0.00 0.00 4.04
1875 1975 5.091261 ACCGCTTCTGATTTGAACTAGAT 57.909 39.130 0.00 0.00 0.00 1.98
1879 1979 4.642429 AGTAACCGCTTCTGATTTGAACT 58.358 39.130 0.00 0.00 0.00 3.01
1902 2003 8.918202 AACCAGAGTAACTGTTGATTTCATTA 57.082 30.769 2.69 0.00 44.40 1.90
1904 2005 7.823745 AAACCAGAGTAACTGTTGATTTCAT 57.176 32.000 2.69 0.00 44.40 2.57
1939 2040 4.157656 AGTGTAAGTGCTTCACTGCAAAAA 59.842 37.500 12.64 0.00 44.62 1.94
1940 2041 3.694072 AGTGTAAGTGCTTCACTGCAAAA 59.306 39.130 12.64 0.00 44.62 2.44
1941 2042 3.278574 AGTGTAAGTGCTTCACTGCAAA 58.721 40.909 12.64 0.00 44.62 3.68
1942 2043 2.872245 GAGTGTAAGTGCTTCACTGCAA 59.128 45.455 16.03 0.00 44.62 4.08
1944 2045 2.478134 CAGAGTGTAAGTGCTTCACTGC 59.522 50.000 16.03 10.59 44.62 4.40
1945 2046 2.478134 GCAGAGTGTAAGTGCTTCACTG 59.522 50.000 16.03 0.00 44.62 3.66
1946 2047 2.366916 AGCAGAGTGTAAGTGCTTCACT 59.633 45.455 13.03 13.03 45.31 3.41
1948 2049 2.759191 CAGCAGAGTGTAAGTGCTTCA 58.241 47.619 0.00 0.00 45.31 3.02
1949 2050 1.462670 GCAGCAGAGTGTAAGTGCTTC 59.537 52.381 0.00 0.00 45.31 3.86
1950 2051 1.071385 AGCAGCAGAGTGTAAGTGCTT 59.929 47.619 0.00 0.00 45.31 3.91
1952 2053 1.196354 CAAGCAGCAGAGTGTAAGTGC 59.804 52.381 0.00 0.00 37.48 4.40
1953 2054 2.735663 CTCAAGCAGCAGAGTGTAAGTG 59.264 50.000 6.70 0.00 0.00 3.16
1954 2055 3.037431 CTCAAGCAGCAGAGTGTAAGT 57.963 47.619 6.70 0.00 0.00 2.24
1978 2112 3.076079 TGGAGCATCTGATCTGCAAAA 57.924 42.857 8.02 0.00 42.15 2.44
1982 2116 2.257691 ACATGGAGCATCTGATCTGC 57.742 50.000 0.00 0.00 39.97 4.26
1990 2124 3.624861 ACAAGAATCGAACATGGAGCATC 59.375 43.478 0.00 0.00 0.00 3.91
2036 5372 8.063200 ACTGTGCTAGTACTCATAATACACAA 57.937 34.615 12.42 0.00 38.04 3.33
2041 5377 9.803315 CTTCAAACTGTGCTAGTACTCATAATA 57.197 33.333 12.42 0.00 39.18 0.98
2092 5462 5.525012 CAGATAGTGATGCCGAATTCTGAAA 59.475 40.000 3.52 0.00 32.96 2.69
2169 5539 4.713792 AGAAACTTGAGTTCCATGACCT 57.286 40.909 0.00 0.00 37.25 3.85
2170 5540 4.022849 CCAAGAAACTTGAGTTCCATGACC 60.023 45.833 12.25 0.00 37.25 4.02
2179 5549 5.501156 AGTTCAGAACCAAGAAACTTGAGT 58.499 37.500 9.85 6.47 0.00 3.41
2188 5558 3.620488 AGCAACAAGTTCAGAACCAAGA 58.380 40.909 9.85 0.00 0.00 3.02
2189 5559 5.695851 ATAGCAACAAGTTCAGAACCAAG 57.304 39.130 9.85 2.96 0.00 3.61
2190 5560 6.463995 AAATAGCAACAAGTTCAGAACCAA 57.536 33.333 9.85 0.00 0.00 3.67
2191 5561 6.127479 ACAAAATAGCAACAAGTTCAGAACCA 60.127 34.615 9.85 0.00 0.00 3.67
2192 5562 6.273071 ACAAAATAGCAACAAGTTCAGAACC 58.727 36.000 9.85 0.00 0.00 3.62
2193 5563 6.972328 TGACAAAATAGCAACAAGTTCAGAAC 59.028 34.615 5.00 5.00 0.00 3.01
2194 5564 7.094508 TGACAAAATAGCAACAAGTTCAGAA 57.905 32.000 0.00 0.00 0.00 3.02
2282 5652 5.426504 CATCAGAGTAAATTCTGCTCCTGT 58.573 41.667 0.00 0.00 43.39 4.00
2288 5658 4.450053 AGAGGCATCAGAGTAAATTCTGC 58.550 43.478 0.00 0.00 43.39 4.26
2315 5685 6.418057 TCAAGCCTGGAATTTTTGTACATT 57.582 33.333 0.00 0.00 0.00 2.71
2326 5696 1.826385 CTTCCGTTCAAGCCTGGAAT 58.174 50.000 0.00 0.00 39.60 3.01
2377 5748 3.340814 TTCTCCTCTGATCCTGCAAAC 57.659 47.619 0.00 0.00 0.00 2.93
2396 5767 7.811713 GCAGAAGCTTAACTCTGAATTTGAATT 59.188 33.333 15.77 0.00 37.91 2.17
2410 5781 1.751437 AATCGGGGCAGAAGCTTAAC 58.249 50.000 0.00 0.00 41.70 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.