Multiple sequence alignment - TraesCS6A01G243500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G243500 chr6A 100.000 2963 0 0 1 2963 454933116 454936078 0.000000e+00 5472
1 TraesCS6A01G243500 chr6D 94.853 1671 47 12 690 2347 317413663 317415307 0.000000e+00 2573
2 TraesCS6A01G243500 chr6D 81.948 698 90 22 1 686 317412574 317413247 2.580000e-155 558
3 TraesCS6A01G243500 chr6D 91.213 239 15 3 2545 2782 317415303 317415536 1.330000e-83 320
4 TraesCS6A01G243500 chr6B 92.512 1656 75 24 696 2347 506836624 506835014 0.000000e+00 2326
5 TraesCS6A01G243500 chr6B 100.000 200 0 0 2345 2544 298312050 298311851 1.300000e-98 370
6 TraesCS6A01G243500 chr2B 97.115 208 5 1 2345 2552 91278563 91278357 1.690000e-92 350
7 TraesCS6A01G243500 chr2B 94.144 222 9 4 2332 2552 5789045 5789263 4.730000e-88 335
8 TraesCS6A01G243500 chr5B 94.393 214 12 0 2341 2554 172749808 172750021 2.200000e-86 329
9 TraesCS6A01G243500 chr5B 95.610 205 8 1 2342 2545 645071609 645071813 7.920000e-86 327
10 TraesCS6A01G243500 chr5B 94.712 208 11 0 2341 2548 127545882 127545675 1.020000e-84 324
11 TraesCS6A01G243500 chr7D 93.925 214 13 0 2340 2553 34397086 34397299 1.020000e-84 324
12 TraesCS6A01G243500 chr3A 95.122 205 10 0 2339 2543 636738549 636738345 1.020000e-84 324
13 TraesCS6A01G243500 chr3D 94.313 211 11 1 2345 2555 112711970 112712179 3.680000e-84 322
14 TraesCS6A01G243500 chr2A 91.429 210 18 0 1391 1600 673195674 673195465 3.740000e-74 289
15 TraesCS6A01G243500 chr2A 88.626 211 22 2 1391 1600 673277050 673276841 3.790000e-64 255
16 TraesCS6A01G243500 chr2A 85.632 174 23 2 1403 1575 673327382 673327554 6.520000e-42 182
17 TraesCS6A01G243500 chr1D 87.019 208 21 4 1389 1593 307420828 307420624 2.300000e-56 230
18 TraesCS6A01G243500 chr1B 85.507 207 24 4 1389 1592 415744337 415744134 8.320000e-51 211
19 TraesCS6A01G243500 chr4D 86.170 188 22 4 1398 1583 479525194 479525379 1.800000e-47 200
20 TraesCS6A01G243500 chr2D 85.632 174 23 2 1403 1575 528635714 528635886 6.520000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G243500 chr6A 454933116 454936078 2962 False 5472.000000 5472 100.000 1 2963 1 chr6A.!!$F1 2962
1 TraesCS6A01G243500 chr6D 317412574 317415536 2962 False 1150.333333 2573 89.338 1 2782 3 chr6D.!!$F1 2781
2 TraesCS6A01G243500 chr6B 506835014 506836624 1610 True 2326.000000 2326 92.512 696 2347 1 chr6B.!!$R2 1651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 332 0.035458 CAAACCCTCAGACTCGCCTT 59.965 55.0 0.00 0.0 0.0 4.35 F
850 1279 0.038526 CCGGCCACCTATAAGTAGCG 60.039 60.0 2.24 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2401 0.667792 GCCAGTCTCAGTTCACGGTC 60.668 60.0 0.00 0.0 0.0 4.79 R
2848 3299 0.111639 AGGCCGGCCTTAAAGAAACA 59.888 50.0 42.84 0.0 45.7 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 4.281688 CAGAAAAAGGAACCACATGTCCAT 59.718 41.667 0.00 0.00 0.00 3.41
50 52 2.113860 AAGGAACCACATGTCCATCG 57.886 50.000 0.00 0.00 0.00 3.84
58 60 2.432874 CCACATGTCCATCGGGTTACTA 59.567 50.000 0.00 0.00 34.93 1.82
88 90 6.753897 AAAAGAAAATGTTGCAGTCGATTC 57.246 33.333 0.00 0.00 0.00 2.52
89 91 5.437289 AAGAAAATGTTGCAGTCGATTCA 57.563 34.783 0.00 0.00 0.00 2.57
90 92 5.437289 AGAAAATGTTGCAGTCGATTCAA 57.563 34.783 0.00 0.00 0.00 2.69
91 93 5.830912 AGAAAATGTTGCAGTCGATTCAAA 58.169 33.333 0.00 0.00 0.00 2.69
92 94 6.272318 AGAAAATGTTGCAGTCGATTCAAAA 58.728 32.000 0.00 0.00 0.00 2.44
93 95 6.925165 AGAAAATGTTGCAGTCGATTCAAAAT 59.075 30.769 0.00 0.00 0.00 1.82
94 96 6.456447 AAATGTTGCAGTCGATTCAAAATG 57.544 33.333 0.00 0.00 0.00 2.32
98 100 6.499172 TGTTGCAGTCGATTCAAAATGTTAA 58.501 32.000 0.00 0.00 0.00 2.01
100 102 7.167302 TGTTGCAGTCGATTCAAAATGTTAAAG 59.833 33.333 0.00 0.00 0.00 1.85
107 109 9.825972 GTCGATTCAAAATGTTAAAGATGAGAA 57.174 29.630 0.00 0.00 0.00 2.87
113 115 9.912634 TCAAAATGTTAAAGATGAGAATCCAAC 57.087 29.630 0.00 0.00 0.00 3.77
114 116 9.143631 CAAAATGTTAAAGATGAGAATCCAACC 57.856 33.333 0.00 0.00 0.00 3.77
115 117 7.410120 AATGTTAAAGATGAGAATCCAACCC 57.590 36.000 0.00 0.00 0.00 4.11
161 173 2.439507 TCTTCCATGGCCATCTTCTACC 59.560 50.000 17.61 0.00 0.00 3.18
166 178 1.279025 TGGCCATCTTCTACCCCACC 61.279 60.000 0.00 0.00 0.00 4.61
184 196 1.612442 CGACCCCCTTCTTCCTCCA 60.612 63.158 0.00 0.00 0.00 3.86
196 208 3.011517 CCTCCACCTCCACCCTGG 61.012 72.222 0.00 0.00 39.43 4.45
197 209 3.721706 CTCCACCTCCACCCTGGC 61.722 72.222 0.00 0.00 37.47 4.85
203 215 2.930019 CTCCACCCTGGCTCACCA 60.930 66.667 0.00 0.00 46.51 4.17
219 231 4.330250 CTCACCAACATCATCCTCTTGTT 58.670 43.478 0.00 0.00 34.03 2.83
229 241 1.893544 TCCTCTTGTTCGAGACTCGT 58.106 50.000 23.41 0.00 41.35 4.18
232 244 0.110328 TCTTGTTCGAGACTCGTCGC 60.110 55.000 23.41 14.83 41.35 5.19
236 248 3.324099 TTCGAGACTCGTCGCCAGC 62.324 63.158 23.41 0.00 41.35 4.85
258 270 4.641645 CCTTGCCACCACTCGCCA 62.642 66.667 0.00 0.00 0.00 5.69
259 271 3.357079 CTTGCCACCACTCGCCAC 61.357 66.667 0.00 0.00 0.00 5.01
265 277 2.184167 CACCACTCGCCACGGTTTT 61.184 57.895 0.00 0.00 0.00 2.43
267 279 2.613506 CCACTCGCCACGGTTTTCC 61.614 63.158 0.00 0.00 0.00 3.13
281 293 0.996583 TTTTCCCGTCCCAGGCTAAT 59.003 50.000 0.00 0.00 0.00 1.73
310 322 0.817634 CCGCACTTGTCAAACCCTCA 60.818 55.000 0.00 0.00 0.00 3.86
320 332 0.035458 CAAACCCTCAGACTCGCCTT 59.965 55.000 0.00 0.00 0.00 4.35
322 334 1.878656 AACCCTCAGACTCGCCTTCG 61.879 60.000 0.00 0.00 0.00 3.79
324 336 1.137825 CCTCAGACTCGCCTTCGTC 59.862 63.158 0.00 0.00 36.96 4.20
326 338 1.370609 CTCAGACTCGCCTTCGTCTA 58.629 55.000 0.00 0.00 38.37 2.59
327 339 1.944024 CTCAGACTCGCCTTCGTCTAT 59.056 52.381 0.00 0.00 38.37 1.98
329 341 1.671328 CAGACTCGCCTTCGTCTATGA 59.329 52.381 0.00 0.00 38.37 2.15
334 346 1.002792 TCGCCTTCGTCTATGATGTCG 60.003 52.381 0.00 0.00 36.96 4.35
342 354 0.104855 TCTATGATGTCGTGGGCAGC 59.895 55.000 0.00 0.00 0.00 5.25
348 360 2.672996 GTCGTGGGCAGCCATGTT 60.673 61.111 15.19 0.00 0.00 2.71
350 362 3.751246 CGTGGGCAGCCATGTTGG 61.751 66.667 15.19 0.00 41.55 3.77
359 371 2.682846 CCATGTTGGCCCCTGCTA 59.317 61.111 0.00 0.00 37.74 3.49
360 372 1.231068 CCATGTTGGCCCCTGCTAT 59.769 57.895 0.00 0.00 37.74 2.97
361 373 0.478072 CCATGTTGGCCCCTGCTATA 59.522 55.000 0.00 0.00 37.74 1.31
369 383 0.174617 GCCCCTGCTATATCTCTCGC 59.825 60.000 0.00 0.00 33.53 5.03
371 385 1.618345 CCCCTGCTATATCTCTCGCCT 60.618 57.143 0.00 0.00 0.00 5.52
379 393 1.974265 TATCTCTCGCCTGAGTCCTG 58.026 55.000 1.32 0.00 43.09 3.86
396 411 1.115467 CTGCCGACTTCTCCATACCT 58.885 55.000 0.00 0.00 0.00 3.08
399 414 1.941325 CCGACTTCTCCATACCTTGC 58.059 55.000 0.00 0.00 0.00 4.01
400 415 1.473434 CCGACTTCTCCATACCTTGCC 60.473 57.143 0.00 0.00 0.00 4.52
402 417 0.541863 ACTTCTCCATACCTTGCCGG 59.458 55.000 0.00 0.00 39.35 6.13
434 449 3.023116 CCCTTGATCCTGGGCCCA 61.023 66.667 26.67 26.67 36.61 5.36
448 463 2.269241 CCCAGGGTTTCGCCTCTC 59.731 66.667 0.00 0.00 37.43 3.20
450 465 1.219393 CCAGGGTTTCGCCTCTCTC 59.781 63.158 0.00 0.00 37.43 3.20
451 466 1.544825 CCAGGGTTTCGCCTCTCTCA 61.545 60.000 0.00 0.00 37.43 3.27
461 476 1.298713 CCTCTCTCACGCGGAATCG 60.299 63.158 12.47 0.00 39.81 3.34
464 479 1.586564 CTCTCACGCGGAATCGACC 60.587 63.158 12.47 0.00 39.00 4.79
472 487 4.744316 GGAATCGACCGGCGTAAT 57.256 55.556 16.00 3.12 41.80 1.89
473 488 2.981997 GGAATCGACCGGCGTAATT 58.018 52.632 16.00 10.39 41.80 1.40
478 493 2.480224 TCGACCGGCGTAATTTCTAG 57.520 50.000 16.00 0.00 41.80 2.43
488 503 5.957796 CGGCGTAATTTCTAGTTCAATTGTC 59.042 40.000 5.13 0.51 0.00 3.18
489 504 6.255950 GGCGTAATTTCTAGTTCAATTGTCC 58.744 40.000 5.13 0.00 0.00 4.02
508 523 4.020039 TGTCCGAGAATTAGCAAAACCCTA 60.020 41.667 0.00 0.00 0.00 3.53
514 529 7.244192 CGAGAATTAGCAAAACCCTAGAAAAG 58.756 38.462 0.00 0.00 0.00 2.27
520 535 8.756486 TTAGCAAAACCCTAGAAAAGTAGTTT 57.244 30.769 0.00 0.00 33.47 2.66
542 557 6.588719 TTGTAATTTGAATGGTGAGAAGGG 57.411 37.500 0.00 0.00 0.00 3.95
551 566 4.649705 TGAGAAGGGTGGCGGGGA 62.650 66.667 0.00 0.00 0.00 4.81
569 584 1.213296 GAGGCCTCCTAATGAACCCA 58.787 55.000 23.19 0.00 31.76 4.51
593 608 3.205784 GGTAGCTACCCTCTCGTTCTA 57.794 52.381 29.68 0.00 40.53 2.10
608 623 6.460781 TCTCGTTCTAGGCATTTGAAAGTTA 58.539 36.000 0.00 0.00 0.00 2.24
628 643 6.668323 AGTTAGAATGTGTACACAATTGCAC 58.332 36.000 31.01 22.78 45.41 4.57
630 645 4.144297 AGAATGTGTACACAATTGCACCT 58.856 39.130 31.01 13.64 45.41 4.00
650 665 3.684788 CCTTCTGTCCTAAAACCATCACG 59.315 47.826 0.00 0.00 0.00 4.35
669 685 1.401409 CGTTCCGTTGCAAAGCATGAT 60.401 47.619 0.00 0.00 38.76 2.45
677 693 4.626604 CGTTGCAAAGCATGATTTATTGGT 59.373 37.500 8.90 0.00 38.76 3.67
686 702 4.742417 CATGATTTATTGGTTCGGCAACA 58.258 39.130 0.00 0.00 33.70 3.33
688 704 2.690173 TTTATTGGTTCGGCAACACG 57.310 45.000 0.00 0.00 33.70 4.49
709 1137 4.514569 CCCCGCGCGTCAAAATCG 62.515 66.667 29.95 10.39 0.00 3.34
825 1254 3.151022 CTCCTCGCACCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
850 1279 0.038526 CCGGCCACCTATAAGTAGCG 60.039 60.000 2.24 0.00 0.00 4.26
902 1331 3.275338 TGCATTCGCACACGCACA 61.275 55.556 0.00 0.00 45.36 4.57
903 1332 2.796617 GCATTCGCACACGCACAC 60.797 61.111 0.00 0.00 39.84 3.82
984 1422 3.714871 GACCTCCGCTCTGCTCTGC 62.715 68.421 0.00 0.00 0.00 4.26
985 1423 3.459965 CCTCCGCTCTGCTCTGCT 61.460 66.667 0.00 0.00 0.00 4.24
986 1424 2.104729 CTCCGCTCTGCTCTGCTC 59.895 66.667 0.00 0.00 0.00 4.26
987 1425 2.362247 TCCGCTCTGCTCTGCTCT 60.362 61.111 0.00 0.00 0.00 4.09
988 1426 2.202770 CCGCTCTGCTCTGCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
997 1436 0.387112 GCTCTGCTCTGATCGATCGG 60.387 60.000 25.51 25.51 34.46 4.18
1149 1588 3.195698 GACTTCATGCCCGCGGAC 61.196 66.667 30.73 18.13 0.00 4.79
1185 1624 4.493747 CCCGCCTTCGTCGACCTC 62.494 72.222 10.58 0.00 0.00 3.85
1398 1837 3.774702 GACGCCAACGACTTCCGC 61.775 66.667 0.00 0.00 43.93 5.54
1811 2259 3.570212 GTCCTGCACCACCACCCT 61.570 66.667 0.00 0.00 0.00 4.34
1812 2260 3.569210 TCCTGCACCACCACCCTG 61.569 66.667 0.00 0.00 0.00 4.45
1857 2308 2.268920 GAGATGTTCCCGCTGGCA 59.731 61.111 0.00 0.00 0.00 4.92
2341 2792 9.965902 GTATGTATATTTGGAAGGAGATTGGAT 57.034 33.333 0.00 0.00 0.00 3.41
2347 2798 9.804977 ATATTTGGAAGGAGATTGGATTTAGAG 57.195 33.333 0.00 0.00 0.00 2.43
2348 2799 5.041191 TGGAAGGAGATTGGATTTAGAGC 57.959 43.478 0.00 0.00 0.00 4.09
2349 2800 4.474651 TGGAAGGAGATTGGATTTAGAGCA 59.525 41.667 0.00 0.00 0.00 4.26
2350 2801 5.133322 TGGAAGGAGATTGGATTTAGAGCAT 59.867 40.000 0.00 0.00 0.00 3.79
2351 2802 6.329986 TGGAAGGAGATTGGATTTAGAGCATA 59.670 38.462 0.00 0.00 0.00 3.14
2352 2803 7.147320 TGGAAGGAGATTGGATTTAGAGCATAA 60.147 37.037 0.00 0.00 0.00 1.90
2353 2804 7.887495 GGAAGGAGATTGGATTTAGAGCATAAT 59.113 37.037 0.00 0.00 0.00 1.28
2354 2805 9.294614 GAAGGAGATTGGATTTAGAGCATAATT 57.705 33.333 0.00 0.00 0.00 1.40
2355 2806 8.632906 AGGAGATTGGATTTAGAGCATAATTG 57.367 34.615 0.00 0.00 0.00 2.32
2356 2807 7.668886 AGGAGATTGGATTTAGAGCATAATTGG 59.331 37.037 0.00 0.00 0.00 3.16
2357 2808 7.449704 GGAGATTGGATTTAGAGCATAATTGGT 59.550 37.037 0.00 0.00 35.95 3.67
2358 2809 8.773033 AGATTGGATTTAGAGCATAATTGGTT 57.227 30.769 0.00 0.00 32.62 3.67
2359 2810 8.854117 AGATTGGATTTAGAGCATAATTGGTTC 58.146 33.333 0.00 0.00 32.62 3.62
2360 2811 6.618287 TGGATTTAGAGCATAATTGGTTCG 57.382 37.500 0.00 0.00 32.62 3.95
2361 2812 6.353323 TGGATTTAGAGCATAATTGGTTCGA 58.647 36.000 0.00 0.00 32.62 3.71
2362 2813 6.998074 TGGATTTAGAGCATAATTGGTTCGAT 59.002 34.615 0.00 0.00 32.62 3.59
2363 2814 7.041167 TGGATTTAGAGCATAATTGGTTCGATG 60.041 37.037 0.00 0.00 32.62 3.84
2364 2815 5.673337 TTAGAGCATAATTGGTTCGATGC 57.327 39.130 1.15 1.15 44.05 3.91
2365 2816 2.880890 AGAGCATAATTGGTTCGATGCC 59.119 45.455 5.24 0.05 44.65 4.40
2366 2817 2.618241 GAGCATAATTGGTTCGATGCCA 59.382 45.455 5.26 5.26 44.65 4.92
2373 2824 2.791383 TGGTTCGATGCCAAAAGTTG 57.209 45.000 6.75 0.00 32.29 3.16
2407 2858 4.464069 TTGGCAACTACCAAATATTGGC 57.536 40.909 9.00 2.72 46.65 4.52
2408 2859 4.093011 TTGGCAACTACCAAATATTGGCT 58.907 39.130 9.00 0.22 46.65 4.75
2409 2860 5.265191 TTGGCAACTACCAAATATTGGCTA 58.735 37.500 9.00 0.90 46.65 3.93
2410 2861 5.359576 TTGGCAACTACCAAATATTGGCTAG 59.640 40.000 9.00 11.41 46.65 3.42
2411 2862 6.805251 TTGGCAACTACCAAATATTGGCTAGA 60.805 38.462 17.70 1.75 46.65 2.43
2412 2863 8.549952 TTGGCAACTACCAAATATTGGCTAGAG 61.550 40.741 17.70 10.38 46.65 2.43
2419 2870 6.966534 CCAAATATTGGCTAGAGATTGGTT 57.033 37.500 0.00 0.00 45.17 3.67
2420 2871 6.742109 CCAAATATTGGCTAGAGATTGGTTG 58.258 40.000 0.00 0.00 45.17 3.77
2421 2872 6.211515 CAAATATTGGCTAGAGATTGGTTGC 58.788 40.000 0.00 0.00 0.00 4.17
2422 2873 3.659183 ATTGGCTAGAGATTGGTTGCT 57.341 42.857 0.00 0.00 0.00 3.91
2423 2874 3.439857 TTGGCTAGAGATTGGTTGCTT 57.560 42.857 0.00 0.00 0.00 3.91
2424 2875 2.715046 TGGCTAGAGATTGGTTGCTTG 58.285 47.619 0.00 0.00 0.00 4.01
2425 2876 1.403323 GGCTAGAGATTGGTTGCTTGC 59.597 52.381 0.00 0.00 0.00 4.01
2426 2877 1.403323 GCTAGAGATTGGTTGCTTGCC 59.597 52.381 0.00 0.00 0.00 4.52
2427 2878 2.715046 CTAGAGATTGGTTGCTTGCCA 58.285 47.619 0.00 0.00 0.00 4.92
2433 2884 2.818130 TTGGTTGCTTGCCAATTCTC 57.182 45.000 3.67 0.00 40.69 2.87
2434 2885 0.597568 TGGTTGCTTGCCAATTCTCG 59.402 50.000 0.00 0.00 35.55 4.04
2435 2886 0.598065 GGTTGCTTGCCAATTCTCGT 59.402 50.000 0.00 0.00 35.55 4.18
2436 2887 1.000274 GGTTGCTTGCCAATTCTCGTT 60.000 47.619 0.00 0.00 35.55 3.85
2437 2888 2.053627 GTTGCTTGCCAATTCTCGTTG 58.946 47.619 0.00 0.00 35.55 4.10
2438 2889 1.317613 TGCTTGCCAATTCTCGTTGT 58.682 45.000 0.00 0.00 0.00 3.32
2439 2890 1.266718 TGCTTGCCAATTCTCGTTGTC 59.733 47.619 0.00 0.00 0.00 3.18
2440 2891 1.266718 GCTTGCCAATTCTCGTTGTCA 59.733 47.619 0.00 0.00 0.00 3.58
2441 2892 2.287547 GCTTGCCAATTCTCGTTGTCAA 60.288 45.455 0.00 0.00 0.00 3.18
2442 2893 3.612479 GCTTGCCAATTCTCGTTGTCAAT 60.612 43.478 0.00 0.00 28.15 2.57
2443 2894 3.829886 TGCCAATTCTCGTTGTCAATC 57.170 42.857 0.00 0.00 0.00 2.67
2444 2895 3.411446 TGCCAATTCTCGTTGTCAATCT 58.589 40.909 0.00 0.00 0.00 2.40
2445 2896 3.436704 TGCCAATTCTCGTTGTCAATCTC 59.563 43.478 0.00 0.00 0.00 2.75
2446 2897 3.436704 GCCAATTCTCGTTGTCAATCTCA 59.563 43.478 0.00 0.00 0.00 3.27
2447 2898 4.670221 GCCAATTCTCGTTGTCAATCTCAC 60.670 45.833 0.00 0.00 0.00 3.51
2448 2899 4.452114 CCAATTCTCGTTGTCAATCTCACA 59.548 41.667 0.00 0.00 0.00 3.58
2449 2900 5.049474 CCAATTCTCGTTGTCAATCTCACAA 60.049 40.000 0.00 0.00 0.00 3.33
2450 2901 6.429624 CAATTCTCGTTGTCAATCTCACAAA 58.570 36.000 0.00 0.00 35.53 2.83
2451 2902 6.618287 ATTCTCGTTGTCAATCTCACAAAA 57.382 33.333 0.00 0.00 35.53 2.44
2452 2903 6.429791 TTCTCGTTGTCAATCTCACAAAAA 57.570 33.333 0.00 0.00 35.53 1.94
2453 2904 6.048073 TCTCGTTGTCAATCTCACAAAAAG 57.952 37.500 0.00 0.00 35.53 2.27
2454 2905 5.584649 TCTCGTTGTCAATCTCACAAAAAGT 59.415 36.000 0.00 0.00 35.53 2.66
2455 2906 6.093495 TCTCGTTGTCAATCTCACAAAAAGTT 59.907 34.615 0.00 0.00 35.53 2.66
2456 2907 6.027131 TCGTTGTCAATCTCACAAAAAGTTG 58.973 36.000 0.00 0.00 40.84 3.16
2457 2908 5.275881 CGTTGTCAATCTCACAAAAAGTTGC 60.276 40.000 0.00 0.00 38.39 4.17
2458 2909 4.681744 TGTCAATCTCACAAAAAGTTGCC 58.318 39.130 0.00 0.00 38.39 4.52
2459 2910 4.159321 TGTCAATCTCACAAAAAGTTGCCA 59.841 37.500 0.00 0.00 38.39 4.92
2460 2911 5.108517 GTCAATCTCACAAAAAGTTGCCAA 58.891 37.500 0.00 0.00 38.39 4.52
2461 2912 5.580297 GTCAATCTCACAAAAAGTTGCCAAA 59.420 36.000 0.00 0.00 38.39 3.28
2462 2913 6.258507 GTCAATCTCACAAAAAGTTGCCAAAT 59.741 34.615 0.00 0.00 38.39 2.32
2463 2914 6.258287 TCAATCTCACAAAAAGTTGCCAAATG 59.742 34.615 0.00 0.00 38.39 2.32
2464 2915 5.083533 TCTCACAAAAAGTTGCCAAATGT 57.916 34.783 0.00 0.00 38.39 2.71
2465 2916 5.486526 TCTCACAAAAAGTTGCCAAATGTT 58.513 33.333 0.00 0.00 38.39 2.71
2466 2917 5.350914 TCTCACAAAAAGTTGCCAAATGTTG 59.649 36.000 1.40 1.40 38.39 3.33
2480 2931 6.676237 CCAAATGTTGGCAACTTTTAACTT 57.324 33.333 31.29 15.68 45.17 2.66
2481 2932 7.082700 CCAAATGTTGGCAACTTTTAACTTT 57.917 32.000 31.29 15.11 45.17 2.66
2482 2933 6.966066 CCAAATGTTGGCAACTTTTAACTTTG 59.034 34.615 31.29 22.54 45.17 2.77
2483 2934 5.733226 ATGTTGGCAACTTTTAACTTTGC 57.267 34.783 28.71 6.39 44.05 3.68
2490 2941 6.117911 GCAACTTTTAACTTTGCCAAATGT 57.882 33.333 0.00 0.00 39.82 2.71
2491 2942 6.550843 GCAACTTTTAACTTTGCCAAATGTT 58.449 32.000 9.06 9.06 39.82 2.71
2492 2943 6.468637 GCAACTTTTAACTTTGCCAAATGTTG 59.531 34.615 15.22 15.22 43.28 3.33
2501 2952 3.702147 CCAAATGTTGGCTTGCCAA 57.298 47.368 21.59 21.59 45.17 4.52
2502 2953 1.964552 CCAAATGTTGGCTTGCCAAA 58.035 45.000 26.12 17.09 45.17 3.28
2503 2954 2.506444 CCAAATGTTGGCTTGCCAAAT 58.494 42.857 26.12 18.32 45.17 2.32
2504 2955 3.672808 CCAAATGTTGGCTTGCCAAATA 58.327 40.909 26.12 18.73 45.17 1.40
2505 2956 4.263435 CCAAATGTTGGCTTGCCAAATAT 58.737 39.130 26.12 19.92 45.17 1.28
2506 2957 4.701171 CCAAATGTTGGCTTGCCAAATATT 59.299 37.500 26.12 23.52 45.17 1.28
2507 2958 5.392165 CCAAATGTTGGCTTGCCAAATATTG 60.392 40.000 26.12 25.13 45.17 1.90
2545 2996 5.582689 GGTAGCAAACCAATTATGCTCTT 57.417 39.130 2.36 0.00 46.98 2.85
2546 2997 6.693315 GGTAGCAAACCAATTATGCTCTTA 57.307 37.500 2.36 0.00 46.98 2.10
2547 2998 6.729187 GGTAGCAAACCAATTATGCTCTTAG 58.271 40.000 2.36 0.00 46.98 2.18
2548 2999 6.542370 GGTAGCAAACCAATTATGCTCTTAGA 59.458 38.462 2.36 0.00 46.98 2.10
2551 3002 6.264067 AGCAAACCAATTATGCTCTTAGATCC 59.736 38.462 0.00 0.00 46.98 3.36
2559 3010 4.734398 ATGCTCTTAGATCCATCGATCC 57.266 45.455 0.00 0.00 45.32 3.36
2573 3024 1.773054 CGATCCGTCGGTCGATGTCT 61.773 60.000 23.27 0.00 44.00 3.41
2574 3025 1.224075 GATCCGTCGGTCGATGTCTA 58.776 55.000 11.88 0.00 42.86 2.59
2575 3026 1.805345 GATCCGTCGGTCGATGTCTAT 59.195 52.381 11.88 0.00 42.86 1.98
2576 3027 2.531522 TCCGTCGGTCGATGTCTATA 57.468 50.000 11.88 0.00 42.86 1.31
2597 3048 2.514205 ATGCAGTTGTGTTTGCCTTC 57.486 45.000 0.00 0.00 39.54 3.46
2613 3064 2.223572 GCCTTCTGGTGCCATAAATTCG 60.224 50.000 0.00 0.00 35.27 3.34
2617 3068 4.223556 TCTGGTGCCATAAATTCGGTTA 57.776 40.909 0.00 0.00 0.00 2.85
2626 3077 5.220796 GCCATAAATTCGGTTAGGACTTCAC 60.221 44.000 0.00 0.00 0.00 3.18
2631 3082 1.001048 TCGGTTAGGACTTCACGTGTG 60.001 52.381 16.51 12.19 0.00 3.82
2639 3090 2.413837 GACTTCACGTGTGGCTACATT 58.586 47.619 16.51 0.00 39.39 2.71
2699 3150 1.607628 ACCTAGCCATAGCGTCGTTAG 59.392 52.381 0.00 0.00 46.67 2.34
2701 3152 2.350580 CCTAGCCATAGCGTCGTTAGTC 60.351 54.545 0.00 0.00 46.67 2.59
2702 3153 0.029035 AGCCATAGCGTCGTTAGTCG 59.971 55.000 0.00 0.00 46.67 4.18
2716 3167 3.176708 GTTAGTCGCACGCTCTAAATGA 58.823 45.455 8.31 0.00 0.00 2.57
2720 3171 3.119602 AGTCGCACGCTCTAAATGAAGTA 60.120 43.478 0.00 0.00 0.00 2.24
2776 3227 0.546122 TTCCACACTTGACACAGGCT 59.454 50.000 0.00 0.00 0.00 4.58
2779 3230 1.382522 CACACTTGACACAGGCTGTT 58.617 50.000 19.43 9.74 31.03 3.16
2780 3231 1.331756 CACACTTGACACAGGCTGTTC 59.668 52.381 19.43 18.14 31.03 3.18
2781 3232 1.065491 ACACTTGACACAGGCTGTTCA 60.065 47.619 19.43 20.37 31.03 3.18
2782 3233 1.600957 CACTTGACACAGGCTGTTCAG 59.399 52.381 19.43 17.75 31.03 3.02
2783 3234 1.210478 ACTTGACACAGGCTGTTCAGT 59.790 47.619 19.43 13.39 31.03 3.41
2784 3235 1.600957 CTTGACACAGGCTGTTCAGTG 59.399 52.381 19.43 15.60 37.95 3.66
2785 3236 0.829990 TGACACAGGCTGTTCAGTGA 59.170 50.000 19.43 4.36 35.97 3.41
2786 3237 1.417517 TGACACAGGCTGTTCAGTGAT 59.582 47.619 19.43 0.00 35.97 3.06
2787 3238 2.072298 GACACAGGCTGTTCAGTGATC 58.928 52.381 19.43 3.55 35.97 2.92
2788 3239 1.696336 ACACAGGCTGTTCAGTGATCT 59.304 47.619 19.43 0.00 35.97 2.75
2789 3240 2.289320 ACACAGGCTGTTCAGTGATCTC 60.289 50.000 19.43 0.00 35.97 2.75
2790 3241 1.973515 ACAGGCTGTTCAGTGATCTCA 59.026 47.619 15.88 0.00 0.00 3.27
2791 3242 2.570752 ACAGGCTGTTCAGTGATCTCAT 59.429 45.455 15.88 0.00 0.00 2.90
2792 3243 2.937149 CAGGCTGTTCAGTGATCTCATG 59.063 50.000 6.28 0.00 0.00 3.07
2793 3244 2.093075 AGGCTGTTCAGTGATCTCATGG 60.093 50.000 0.00 0.00 0.00 3.66
2794 3245 1.669779 GCTGTTCAGTGATCTCATGGC 59.330 52.381 0.00 0.00 0.00 4.40
2795 3246 1.931841 CTGTTCAGTGATCTCATGGCG 59.068 52.381 0.00 0.00 0.00 5.69
2796 3247 0.654683 GTTCAGTGATCTCATGGCGC 59.345 55.000 0.00 0.00 0.00 6.53
2797 3248 0.462581 TTCAGTGATCTCATGGCGCC 60.463 55.000 22.73 22.73 0.00 6.53
2798 3249 1.890979 CAGTGATCTCATGGCGCCC 60.891 63.158 26.77 6.84 0.00 6.13
2799 3250 2.068821 AGTGATCTCATGGCGCCCT 61.069 57.895 26.77 12.40 0.00 5.19
2800 3251 1.596477 GTGATCTCATGGCGCCCTC 60.596 63.158 26.77 11.28 0.00 4.30
2801 3252 2.356793 GATCTCATGGCGCCCTCG 60.357 66.667 26.77 12.61 39.07 4.63
2802 3253 2.839632 ATCTCATGGCGCCCTCGA 60.840 61.111 26.77 16.52 38.10 4.04
2803 3254 2.369257 GATCTCATGGCGCCCTCGAA 62.369 60.000 26.77 4.49 38.10 3.71
2804 3255 1.762522 ATCTCATGGCGCCCTCGAAT 61.763 55.000 26.77 7.28 38.10 3.34
2805 3256 2.203056 TCATGGCGCCCTCGAATG 60.203 61.111 26.77 20.33 38.10 2.67
2806 3257 3.282157 CATGGCGCCCTCGAATGG 61.282 66.667 26.77 0.00 38.10 3.16
2813 3264 3.603365 CCCTCGAATGGGGCAAAC 58.397 61.111 1.64 0.00 43.45 2.93
2814 3265 1.304052 CCCTCGAATGGGGCAAACA 60.304 57.895 1.64 0.00 43.45 2.83
2815 3266 1.595093 CCCTCGAATGGGGCAAACAC 61.595 60.000 1.64 0.00 43.45 3.32
2816 3267 1.501741 CTCGAATGGGGCAAACACG 59.498 57.895 0.00 0.00 0.00 4.49
2817 3268 1.228003 TCGAATGGGGCAAACACGT 60.228 52.632 0.00 0.00 0.00 4.49
2818 3269 1.209127 CGAATGGGGCAAACACGTC 59.791 57.895 0.00 0.00 0.00 4.34
2819 3270 1.209127 GAATGGGGCAAACACGTCG 59.791 57.895 0.00 0.00 0.00 5.12
2820 3271 2.796245 GAATGGGGCAAACACGTCGC 62.796 60.000 0.00 0.00 0.00 5.19
2821 3272 4.858680 TGGGGCAAACACGTCGCA 62.859 61.111 0.00 0.00 0.00 5.10
2822 3273 3.587933 GGGGCAAACACGTCGCAA 61.588 61.111 0.00 0.00 0.00 4.85
2823 3274 2.409651 GGGCAAACACGTCGCAAA 59.590 55.556 0.00 0.00 0.00 3.68
2824 3275 1.657181 GGGCAAACACGTCGCAAAG 60.657 57.895 0.00 0.00 0.00 2.77
2825 3276 1.063488 GGCAAACACGTCGCAAAGT 59.937 52.632 0.00 0.00 0.00 2.66
2826 3277 0.928451 GGCAAACACGTCGCAAAGTC 60.928 55.000 0.00 0.00 0.00 3.01
2827 3278 0.247894 GCAAACACGTCGCAAAGTCA 60.248 50.000 0.00 0.00 0.00 3.41
2828 3279 1.452717 CAAACACGTCGCAAAGTCAC 58.547 50.000 0.00 0.00 0.00 3.67
2829 3280 1.080298 AAACACGTCGCAAAGTCACA 58.920 45.000 0.00 0.00 0.00 3.58
2830 3281 0.650512 AACACGTCGCAAAGTCACAG 59.349 50.000 0.00 0.00 0.00 3.66
2831 3282 1.083401 CACGTCGCAAAGTCACAGC 60.083 57.895 0.00 0.00 0.00 4.40
2832 3283 1.227263 ACGTCGCAAAGTCACAGCT 60.227 52.632 0.00 0.00 0.00 4.24
2833 3284 0.810031 ACGTCGCAAAGTCACAGCTT 60.810 50.000 0.00 0.00 0.00 3.74
2834 3285 1.136690 CGTCGCAAAGTCACAGCTTA 58.863 50.000 0.00 0.00 0.00 3.09
2835 3286 1.726791 CGTCGCAAAGTCACAGCTTAT 59.273 47.619 0.00 0.00 0.00 1.73
2836 3287 2.921121 CGTCGCAAAGTCACAGCTTATA 59.079 45.455 0.00 0.00 0.00 0.98
2837 3288 3.241678 CGTCGCAAAGTCACAGCTTATAC 60.242 47.826 0.00 0.00 0.00 1.47
2838 3289 3.678072 GTCGCAAAGTCACAGCTTATACA 59.322 43.478 0.00 0.00 0.00 2.29
2839 3290 4.330074 GTCGCAAAGTCACAGCTTATACAT 59.670 41.667 0.00 0.00 0.00 2.29
2840 3291 4.935205 TCGCAAAGTCACAGCTTATACATT 59.065 37.500 0.00 0.00 0.00 2.71
2841 3292 5.411361 TCGCAAAGTCACAGCTTATACATTT 59.589 36.000 0.00 0.00 0.00 2.32
2842 3293 5.509272 CGCAAAGTCACAGCTTATACATTTG 59.491 40.000 0.00 0.00 0.00 2.32
2843 3294 6.381801 GCAAAGTCACAGCTTATACATTTGT 58.618 36.000 0.00 0.00 0.00 2.83
2844 3295 6.524586 GCAAAGTCACAGCTTATACATTTGTC 59.475 38.462 0.00 0.00 0.00 3.18
2845 3296 7.584108 CAAAGTCACAGCTTATACATTTGTCA 58.416 34.615 0.00 0.00 0.00 3.58
2846 3297 7.744087 AAGTCACAGCTTATACATTTGTCAA 57.256 32.000 0.00 0.00 0.00 3.18
2847 3298 7.369803 AGTCACAGCTTATACATTTGTCAAG 57.630 36.000 0.00 0.00 0.00 3.02
2848 3299 6.936900 AGTCACAGCTTATACATTTGTCAAGT 59.063 34.615 0.00 0.00 0.00 3.16
2849 3300 7.017645 GTCACAGCTTATACATTTGTCAAGTG 58.982 38.462 6.53 6.53 0.00 3.16
2850 3301 6.710295 TCACAGCTTATACATTTGTCAAGTGT 59.290 34.615 16.76 16.76 0.00 3.55
2851 3302 7.228507 TCACAGCTTATACATTTGTCAAGTGTT 59.771 33.333 17.63 9.23 0.00 3.32
2852 3303 7.862372 CACAGCTTATACATTTGTCAAGTGTTT 59.138 33.333 17.63 12.81 0.00 2.83
2853 3304 8.076178 ACAGCTTATACATTTGTCAAGTGTTTC 58.924 33.333 17.63 4.94 0.00 2.78
2854 3305 8.292448 CAGCTTATACATTTGTCAAGTGTTTCT 58.708 33.333 17.63 7.26 0.00 2.52
2855 3306 8.850156 AGCTTATACATTTGTCAAGTGTTTCTT 58.150 29.630 17.63 5.35 36.75 2.52
2856 3307 9.463443 GCTTATACATTTGTCAAGTGTTTCTTT 57.537 29.630 17.63 3.32 33.63 2.52
2860 3311 9.965824 ATACATTTGTCAAGTGTTTCTTTAAGG 57.034 29.630 17.63 0.00 33.63 2.69
2861 3312 6.756542 ACATTTGTCAAGTGTTTCTTTAAGGC 59.243 34.615 7.84 0.00 33.63 4.35
2862 3313 4.911514 TGTCAAGTGTTTCTTTAAGGCC 57.088 40.909 0.00 0.00 33.63 5.19
2863 3314 3.314080 TGTCAAGTGTTTCTTTAAGGCCG 59.686 43.478 0.00 0.00 33.63 6.13
2864 3315 2.882137 TCAAGTGTTTCTTTAAGGCCGG 59.118 45.455 0.00 0.00 33.63 6.13
2865 3316 1.244816 AGTGTTTCTTTAAGGCCGGC 58.755 50.000 21.18 21.18 0.00 6.13
2866 3317 0.242825 GTGTTTCTTTAAGGCCGGCC 59.757 55.000 39.29 39.29 0.00 6.13
2867 3318 5.904330 AAGTGTTTCTTTAAGGCCGGCCT 62.904 47.826 42.84 42.84 39.85 5.19
2877 3328 4.115199 GCCGGCCTTCACCCAGAT 62.115 66.667 18.11 0.00 0.00 2.90
2878 3329 2.742116 GCCGGCCTTCACCCAGATA 61.742 63.158 18.11 0.00 0.00 1.98
2879 3330 1.912220 CCGGCCTTCACCCAGATAA 59.088 57.895 0.00 0.00 0.00 1.75
2880 3331 0.474184 CCGGCCTTCACCCAGATAAT 59.526 55.000 0.00 0.00 0.00 1.28
2881 3332 1.133792 CCGGCCTTCACCCAGATAATT 60.134 52.381 0.00 0.00 0.00 1.40
2882 3333 2.105821 CCGGCCTTCACCCAGATAATTA 59.894 50.000 0.00 0.00 0.00 1.40
2883 3334 3.434453 CCGGCCTTCACCCAGATAATTAA 60.434 47.826 0.00 0.00 0.00 1.40
2884 3335 3.564225 CGGCCTTCACCCAGATAATTAAC 59.436 47.826 0.00 0.00 0.00 2.01
2885 3336 4.532834 GGCCTTCACCCAGATAATTAACA 58.467 43.478 0.00 0.00 0.00 2.41
2886 3337 4.953579 GGCCTTCACCCAGATAATTAACAA 59.046 41.667 0.00 0.00 0.00 2.83
2887 3338 5.067805 GGCCTTCACCCAGATAATTAACAAG 59.932 44.000 0.00 0.00 0.00 3.16
2888 3339 5.450550 GCCTTCACCCAGATAATTAACAAGC 60.451 44.000 0.00 0.00 0.00 4.01
2889 3340 5.220854 CCTTCACCCAGATAATTAACAAGCG 60.221 44.000 0.00 0.00 0.00 4.68
2890 3341 3.625764 TCACCCAGATAATTAACAAGCGC 59.374 43.478 0.00 0.00 0.00 5.92
2891 3342 3.376859 CACCCAGATAATTAACAAGCGCA 59.623 43.478 11.47 0.00 0.00 6.09
2892 3343 4.036734 CACCCAGATAATTAACAAGCGCAT 59.963 41.667 11.47 0.00 0.00 4.73
2893 3344 4.036734 ACCCAGATAATTAACAAGCGCATG 59.963 41.667 11.47 11.60 0.00 4.06
2894 3345 4.036734 CCCAGATAATTAACAAGCGCATGT 59.963 41.667 13.33 13.33 34.24 3.21
2895 3346 4.971830 CCAGATAATTAACAAGCGCATGTG 59.028 41.667 20.14 11.58 32.81 3.21
2896 3347 5.449041 CCAGATAATTAACAAGCGCATGTGT 60.449 40.000 20.14 12.28 32.81 3.72
2897 3348 6.029607 CAGATAATTAACAAGCGCATGTGTT 58.970 36.000 20.14 21.44 40.88 3.32
2898 3349 6.527722 CAGATAATTAACAAGCGCATGTGTTT 59.472 34.615 20.14 14.66 38.80 2.83
2899 3350 4.970472 AATTAACAAGCGCATGTGTTTG 57.030 36.364 27.70 27.70 38.80 2.93
2900 3351 1.764851 TAACAAGCGCATGTGTTTGC 58.235 45.000 28.80 10.88 38.80 3.68
2901 3352 0.102844 AACAAGCGCATGTGTTTGCT 59.897 45.000 28.80 18.36 40.54 3.91
2903 3354 0.780002 CAAGCGCATGTGTTTGCTTC 59.220 50.000 20.56 0.00 45.26 3.86
2904 3355 0.385029 AAGCGCATGTGTTTGCTTCA 59.615 45.000 11.47 0.00 43.77 3.02
2905 3356 0.039798 AGCGCATGTGTTTGCTTCAG 60.040 50.000 11.47 0.00 40.54 3.02
2906 3357 1.611592 GCGCATGTGTTTGCTTCAGC 61.612 55.000 0.30 0.00 40.54 4.26
2907 3358 0.039798 CGCATGTGTTTGCTTCAGCT 60.040 50.000 0.00 0.00 40.54 4.24
2908 3359 1.415374 GCATGTGTTTGCTTCAGCTG 58.585 50.000 7.63 7.63 42.66 4.24
2909 3360 1.001048 GCATGTGTTTGCTTCAGCTGA 60.001 47.619 13.74 13.74 42.66 4.26
2910 3361 2.352421 GCATGTGTTTGCTTCAGCTGAT 60.352 45.455 19.04 0.00 42.66 2.90
2911 3362 3.119743 GCATGTGTTTGCTTCAGCTGATA 60.120 43.478 19.04 7.79 42.66 2.15
2912 3363 4.659088 CATGTGTTTGCTTCAGCTGATAG 58.341 43.478 19.04 17.63 42.66 2.08
2913 3364 2.485426 TGTGTTTGCTTCAGCTGATAGC 59.515 45.455 28.90 28.90 42.84 2.97
2914 3365 2.086869 TGTTTGCTTCAGCTGATAGCC 58.913 47.619 30.68 22.00 43.77 3.93
2915 3366 2.290514 TGTTTGCTTCAGCTGATAGCCT 60.291 45.455 30.68 0.00 43.77 4.58
2916 3367 2.322355 TTGCTTCAGCTGATAGCCTC 57.678 50.000 30.68 15.81 43.77 4.70
2917 3368 1.197812 TGCTTCAGCTGATAGCCTCA 58.802 50.000 30.68 19.01 43.77 3.86
2918 3369 1.556451 TGCTTCAGCTGATAGCCTCAA 59.444 47.619 30.68 18.76 43.77 3.02
2919 3370 1.939255 GCTTCAGCTGATAGCCTCAAC 59.061 52.381 26.98 3.92 43.77 3.18
2920 3371 2.679059 GCTTCAGCTGATAGCCTCAACA 60.679 50.000 26.98 8.05 43.77 3.33
2921 3372 2.680312 TCAGCTGATAGCCTCAACAC 57.320 50.000 13.74 0.00 43.77 3.32
2922 3373 2.182827 TCAGCTGATAGCCTCAACACT 58.817 47.619 13.74 0.00 43.77 3.55
2923 3374 2.093816 TCAGCTGATAGCCTCAACACTG 60.094 50.000 13.74 0.00 43.77 3.66
2924 3375 1.905215 AGCTGATAGCCTCAACACTGT 59.095 47.619 0.00 0.00 43.77 3.55
2925 3376 2.304180 AGCTGATAGCCTCAACACTGTT 59.696 45.455 0.00 0.00 43.77 3.16
2926 3377 3.077359 GCTGATAGCCTCAACACTGTTT 58.923 45.455 0.00 0.00 34.48 2.83
2927 3378 3.120060 GCTGATAGCCTCAACACTGTTTG 60.120 47.826 0.00 0.00 34.48 2.93
2928 3379 3.411446 TGATAGCCTCAACACTGTTTGG 58.589 45.455 6.41 6.41 0.00 3.28
2929 3380 3.072330 TGATAGCCTCAACACTGTTTGGA 59.928 43.478 12.59 0.00 0.00 3.53
2930 3381 2.664402 AGCCTCAACACTGTTTGGAT 57.336 45.000 12.59 5.58 0.00 3.41
2931 3382 2.949447 AGCCTCAACACTGTTTGGATT 58.051 42.857 12.59 0.96 0.00 3.01
2932 3383 4.098914 AGCCTCAACACTGTTTGGATTA 57.901 40.909 12.59 0.00 0.00 1.75
2933 3384 4.074970 AGCCTCAACACTGTTTGGATTAG 58.925 43.478 12.59 0.00 0.00 1.73
2934 3385 4.072131 GCCTCAACACTGTTTGGATTAGA 58.928 43.478 12.59 0.00 0.00 2.10
2935 3386 4.083271 GCCTCAACACTGTTTGGATTAGAC 60.083 45.833 12.59 0.00 0.00 2.59
2936 3387 4.152402 CCTCAACACTGTTTGGATTAGACG 59.848 45.833 5.23 0.00 0.00 4.18
2937 3388 3.496884 TCAACACTGTTTGGATTAGACGC 59.503 43.478 0.00 0.00 0.00 5.19
2938 3389 2.066262 ACACTGTTTGGATTAGACGCG 58.934 47.619 3.53 3.53 0.00 6.01
2939 3390 1.076332 ACTGTTTGGATTAGACGCGC 58.924 50.000 5.73 0.00 0.00 6.86
2940 3391 0.373716 CTGTTTGGATTAGACGCGCC 59.626 55.000 5.73 0.00 0.00 6.53
2941 3392 1.022451 TGTTTGGATTAGACGCGCCC 61.022 55.000 5.73 0.00 0.00 6.13
2942 3393 1.812093 TTTGGATTAGACGCGCCCG 60.812 57.895 5.73 0.00 41.14 6.13
2943 3394 4.884257 TGGATTAGACGCGCCCGC 62.884 66.667 5.73 1.98 38.22 6.13
2956 3407 2.280389 CCCGCGCTACTCATGCAT 60.280 61.111 5.56 0.00 0.00 3.96
2957 3408 2.601398 CCCGCGCTACTCATGCATG 61.601 63.158 21.07 21.07 0.00 4.06
2958 3409 2.247557 CGCGCTACTCATGCATGC 59.752 61.111 22.25 11.82 0.00 4.06
2959 3410 2.527867 CGCGCTACTCATGCATGCA 61.528 57.895 25.04 25.04 0.00 3.96
2960 3411 1.838568 CGCGCTACTCATGCATGCAT 61.839 55.000 27.46 27.46 37.08 3.96
2961 3412 0.110328 GCGCTACTCATGCATGCATC 60.110 55.000 30.07 16.47 33.90 3.91
2962 3413 1.509703 CGCTACTCATGCATGCATCT 58.490 50.000 30.07 17.13 33.90 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.161773 ACATGTGGTTCCTTTTTCTGATATG 57.838 36.000 0.00 0.00 0.00 1.78
69 71 6.509317 TTTTGAATCGACTGCAACATTTTC 57.491 33.333 0.00 0.00 0.00 2.29
70 72 6.479660 ACATTTTGAATCGACTGCAACATTTT 59.520 30.769 0.00 0.00 0.00 1.82
71 73 5.984926 ACATTTTGAATCGACTGCAACATTT 59.015 32.000 0.00 0.00 0.00 2.32
72 74 5.531634 ACATTTTGAATCGACTGCAACATT 58.468 33.333 0.00 0.00 0.00 2.71
73 75 5.125100 ACATTTTGAATCGACTGCAACAT 57.875 34.783 0.00 0.00 0.00 2.71
74 76 4.566545 ACATTTTGAATCGACTGCAACA 57.433 36.364 0.00 0.00 0.00 3.33
77 79 6.964908 TCTTTAACATTTTGAATCGACTGCA 58.035 32.000 0.00 0.00 0.00 4.41
79 81 9.270576 CTCATCTTTAACATTTTGAATCGACTG 57.729 33.333 0.00 0.00 0.00 3.51
80 82 9.219603 TCTCATCTTTAACATTTTGAATCGACT 57.780 29.630 0.00 0.00 0.00 4.18
81 83 9.825972 TTCTCATCTTTAACATTTTGAATCGAC 57.174 29.630 0.00 0.00 0.00 4.20
87 89 9.912634 GTTGGATTCTCATCTTTAACATTTTGA 57.087 29.630 0.00 0.00 0.00 2.69
88 90 9.143631 GGTTGGATTCTCATCTTTAACATTTTG 57.856 33.333 0.00 0.00 0.00 2.44
89 91 8.314021 GGGTTGGATTCTCATCTTTAACATTTT 58.686 33.333 0.00 0.00 0.00 1.82
90 92 7.093333 GGGGTTGGATTCTCATCTTTAACATTT 60.093 37.037 0.00 0.00 0.00 2.32
91 93 6.381133 GGGGTTGGATTCTCATCTTTAACATT 59.619 38.462 0.00 0.00 0.00 2.71
92 94 5.893824 GGGGTTGGATTCTCATCTTTAACAT 59.106 40.000 0.00 0.00 0.00 2.71
93 95 5.261216 GGGGTTGGATTCTCATCTTTAACA 58.739 41.667 0.00 0.00 0.00 2.41
94 96 4.645136 GGGGGTTGGATTCTCATCTTTAAC 59.355 45.833 0.00 0.00 0.00 2.01
98 100 2.511637 GAGGGGGTTGGATTCTCATCTT 59.488 50.000 0.00 0.00 0.00 2.40
100 102 1.143889 GGAGGGGGTTGGATTCTCATC 59.856 57.143 0.00 0.00 0.00 2.92
107 109 1.844296 TAGGTGGGAGGGGGTTGGAT 61.844 60.000 0.00 0.00 0.00 3.41
113 115 0.401395 TAATGCTAGGTGGGAGGGGG 60.401 60.000 0.00 0.00 0.00 5.40
114 116 1.747444 ATAATGCTAGGTGGGAGGGG 58.253 55.000 0.00 0.00 0.00 4.79
115 117 2.711009 TGAATAATGCTAGGTGGGAGGG 59.289 50.000 0.00 0.00 0.00 4.30
161 173 2.933834 AAGAAGGGGGTCGGTGGG 60.934 66.667 0.00 0.00 0.00 4.61
166 178 1.612442 TGGAGGAAGAAGGGGGTCG 60.612 63.158 0.00 0.00 0.00 4.79
184 196 2.930562 GTGAGCCAGGGTGGAGGT 60.931 66.667 0.00 0.00 40.96 3.85
196 208 2.681848 CAAGAGGATGATGTTGGTGAGC 59.318 50.000 0.00 0.00 0.00 4.26
197 209 3.947868 ACAAGAGGATGATGTTGGTGAG 58.052 45.455 0.00 0.00 0.00 3.51
203 215 4.221703 AGTCTCGAACAAGAGGATGATGTT 59.778 41.667 0.00 0.00 39.82 2.71
204 216 3.766591 AGTCTCGAACAAGAGGATGATGT 59.233 43.478 0.00 0.00 38.71 3.06
205 217 4.358851 GAGTCTCGAACAAGAGGATGATG 58.641 47.826 0.00 0.00 38.71 3.07
206 218 3.066064 CGAGTCTCGAACAAGAGGATGAT 59.934 47.826 17.52 0.00 43.74 2.45
207 219 2.420372 CGAGTCTCGAACAAGAGGATGA 59.580 50.000 17.52 0.00 43.74 2.92
210 222 1.805345 GACGAGTCTCGAACAAGAGGA 59.195 52.381 28.33 0.00 43.74 3.71
219 231 3.800863 GCTGGCGACGAGTCTCGA 61.801 66.667 28.33 4.83 43.74 4.04
236 248 4.954970 AGTGGTGGCAAGGCGTGG 62.955 66.667 1.91 0.00 0.00 4.94
247 259 2.113131 GAAAACCGTGGCGAGTGGTG 62.113 60.000 0.00 0.00 35.79 4.17
248 260 1.890510 GAAAACCGTGGCGAGTGGT 60.891 57.895 0.00 0.00 37.68 4.16
251 263 2.281276 GGGAAAACCGTGGCGAGT 60.281 61.111 0.00 0.00 0.00 4.18
287 299 1.299089 GTTTGACAAGTGCGGGTGC 60.299 57.895 0.00 0.00 43.20 5.01
288 300 1.358759 GGTTTGACAAGTGCGGGTG 59.641 57.895 0.00 0.00 0.00 4.61
289 301 1.826487 GGGTTTGACAAGTGCGGGT 60.826 57.895 0.00 0.00 0.00 5.28
290 302 1.515521 GAGGGTTTGACAAGTGCGGG 61.516 60.000 0.00 0.00 0.00 6.13
291 303 0.817634 TGAGGGTTTGACAAGTGCGG 60.818 55.000 0.00 0.00 0.00 5.69
292 304 0.588252 CTGAGGGTTTGACAAGTGCG 59.412 55.000 0.00 0.00 0.00 5.34
293 305 1.604278 GTCTGAGGGTTTGACAAGTGC 59.396 52.381 0.00 0.00 0.00 4.40
297 309 1.540363 GCGAGTCTGAGGGTTTGACAA 60.540 52.381 0.00 0.00 33.56 3.18
302 314 0.321996 GAAGGCGAGTCTGAGGGTTT 59.678 55.000 0.00 0.00 0.00 3.27
320 332 0.384309 GCCCACGACATCATAGACGA 59.616 55.000 0.00 0.00 0.00 4.20
322 334 1.858091 CTGCCCACGACATCATAGAC 58.142 55.000 0.00 0.00 0.00 2.59
324 336 0.882042 GGCTGCCCACGACATCATAG 60.882 60.000 7.66 0.00 0.00 2.23
326 338 2.124570 GGCTGCCCACGACATCAT 60.125 61.111 7.66 0.00 0.00 2.45
327 339 2.970379 ATGGCTGCCCACGACATCA 61.970 57.895 17.53 0.00 45.77 3.07
329 341 2.438975 CATGGCTGCCCACGACAT 60.439 61.111 17.53 0.00 45.77 3.06
342 354 0.478072 TATAGCAGGGGCCAACATGG 59.522 55.000 4.39 0.00 42.56 3.66
348 360 1.892769 CGAGAGATATAGCAGGGGCCA 60.893 57.143 4.39 0.00 42.56 5.36
350 362 0.174617 GCGAGAGATATAGCAGGGGC 59.825 60.000 0.00 0.00 41.61 5.80
351 363 0.820871 GGCGAGAGATATAGCAGGGG 59.179 60.000 0.00 0.00 0.00 4.79
352 364 1.476085 CAGGCGAGAGATATAGCAGGG 59.524 57.143 0.00 0.00 0.00 4.45
353 365 2.423185 CTCAGGCGAGAGATATAGCAGG 59.577 54.545 4.27 0.00 42.34 4.85
355 367 3.078097 GACTCAGGCGAGAGATATAGCA 58.922 50.000 15.33 0.00 42.34 3.49
359 371 2.513753 CAGGACTCAGGCGAGAGATAT 58.486 52.381 15.33 0.00 42.34 1.63
360 372 1.974265 CAGGACTCAGGCGAGAGATA 58.026 55.000 15.33 0.00 42.34 1.98
361 373 1.391157 GCAGGACTCAGGCGAGAGAT 61.391 60.000 15.33 1.98 42.34 2.75
379 393 1.941325 CAAGGTATGGAGAAGTCGGC 58.059 55.000 0.00 0.00 0.00 5.54
432 447 1.219393 GAGAGAGGCGAAACCCTGG 59.781 63.158 0.00 0.00 40.58 4.45
434 449 1.878656 CGTGAGAGAGGCGAAACCCT 61.879 60.000 0.00 0.00 40.58 4.34
448 463 2.949678 CGGTCGATTCCGCGTGAG 60.950 66.667 4.92 0.00 43.96 3.51
455 470 1.259770 GAAATTACGCCGGTCGATTCC 59.740 52.381 22.10 0.32 41.67 3.01
461 476 3.514645 TGAACTAGAAATTACGCCGGTC 58.485 45.455 1.90 0.00 0.00 4.79
464 479 5.864986 ACAATTGAACTAGAAATTACGCCG 58.135 37.500 13.59 0.00 0.00 6.46
472 487 7.979444 AATTCTCGGACAATTGAACTAGAAA 57.021 32.000 13.59 0.00 0.00 2.52
473 488 7.277981 GCTAATTCTCGGACAATTGAACTAGAA 59.722 37.037 13.59 15.68 0.00 2.10
478 493 5.545658 TGCTAATTCTCGGACAATTGAAC 57.454 39.130 13.59 5.68 0.00 3.18
488 503 4.766375 TCTAGGGTTTTGCTAATTCTCGG 58.234 43.478 0.00 0.00 0.00 4.63
489 504 6.737254 TTTCTAGGGTTTTGCTAATTCTCG 57.263 37.500 0.00 0.00 0.00 4.04
514 529 9.612620 CTTCTCACCATTCAAATTACAAACTAC 57.387 33.333 0.00 0.00 0.00 2.73
520 535 5.476599 CACCCTTCTCACCATTCAAATTACA 59.523 40.000 0.00 0.00 0.00 2.41
532 547 4.410400 CCCGCCACCCTTCTCACC 62.410 72.222 0.00 0.00 0.00 4.02
533 548 4.410400 CCCCGCCACCCTTCTCAC 62.410 72.222 0.00 0.00 0.00 3.51
551 566 1.496429 CATGGGTTCATTAGGAGGCCT 59.504 52.381 3.86 3.86 37.71 5.19
588 603 8.515414 ACATTCTAACTTTCAAATGCCTAGAAC 58.485 33.333 0.00 0.00 33.42 3.01
589 604 8.514594 CACATTCTAACTTTCAAATGCCTAGAA 58.485 33.333 0.00 0.00 33.42 2.10
593 608 6.655078 ACACATTCTAACTTTCAAATGCCT 57.345 33.333 0.00 0.00 33.42 4.75
608 623 4.144297 AGGTGCAATTGTGTACACATTCT 58.856 39.130 28.35 14.54 41.75 2.40
628 643 3.684788 CGTGATGGTTTTAGGACAGAAGG 59.315 47.826 0.00 0.00 0.00 3.46
630 645 4.345859 ACGTGATGGTTTTAGGACAGAA 57.654 40.909 0.00 0.00 0.00 3.02
650 665 2.352503 ATCATGCTTTGCAACGGAAC 57.647 45.000 0.00 0.00 43.62 3.62
669 685 2.031857 GTCGTGTTGCCGAACCAATAAA 60.032 45.455 0.00 0.00 38.80 1.40
677 693 2.589442 GGGTGTCGTGTTGCCGAA 60.589 61.111 0.00 0.00 38.80 4.30
709 1137 2.067013 GGAAGTGTGAAACTACTCGGC 58.933 52.381 0.00 0.00 38.56 5.54
712 1140 2.067013 GCGGGAAGTGTGAAACTACTC 58.933 52.381 0.00 0.00 38.56 2.59
850 1279 3.054361 TGGAGAAAGCTAAGGTGGATTCC 60.054 47.826 0.00 0.00 0.00 3.01
898 1327 4.927782 TGGAGGTGTGCCGTGTGC 62.928 66.667 0.00 0.00 40.50 4.57
899 1328 1.172180 ATTTGGAGGTGTGCCGTGTG 61.172 55.000 0.00 0.00 40.50 3.82
900 1329 0.889186 GATTTGGAGGTGTGCCGTGT 60.889 55.000 0.00 0.00 40.50 4.49
901 1330 1.586154 GGATTTGGAGGTGTGCCGTG 61.586 60.000 0.00 0.00 40.50 4.94
902 1331 1.303317 GGATTTGGAGGTGTGCCGT 60.303 57.895 0.00 0.00 40.50 5.68
903 1332 0.893270 TTGGATTTGGAGGTGTGCCG 60.893 55.000 0.00 0.00 40.50 5.69
904 1333 0.603065 GTTGGATTTGGAGGTGTGCC 59.397 55.000 0.00 0.00 0.00 5.01
937 1375 0.106217 GAGAGGGAGAGGGAGACTGG 60.106 65.000 0.00 0.00 0.00 4.00
939 1377 1.222567 GAGAGAGGGAGAGGGAGACT 58.777 60.000 0.00 0.00 0.00 3.24
972 1410 0.595567 GATCAGAGCAGAGCAGAGCG 60.596 60.000 0.00 0.00 35.48 5.03
984 1422 0.389556 CCATGGCCGATCGATCAGAG 60.390 60.000 24.40 13.43 0.00 3.35
985 1423 0.827507 TCCATGGCCGATCGATCAGA 60.828 55.000 24.40 6.15 0.00 3.27
986 1424 0.668706 GTCCATGGCCGATCGATCAG 60.669 60.000 24.40 14.99 0.00 2.90
987 1425 1.115326 AGTCCATGGCCGATCGATCA 61.115 55.000 24.40 14.39 0.00 2.92
988 1426 0.034059 AAGTCCATGGCCGATCGATC 59.966 55.000 18.66 15.68 0.00 3.69
1013 1452 0.523546 CGAGAAGTCGTCCATGTCGG 60.524 60.000 7.49 0.00 41.57 4.79
1379 1818 3.110178 GGAAGTCGTTGGCGTCCG 61.110 66.667 0.00 0.00 39.49 4.79
1662 2110 2.786564 CTTGCCGCTTCCGCTTGTTC 62.787 60.000 0.00 0.00 0.00 3.18
1857 2308 0.680280 ACGTCCAGCTAGTCGGTGAT 60.680 55.000 3.84 0.00 43.75 3.06
1950 2401 0.667792 GCCAGTCTCAGTTCACGGTC 60.668 60.000 0.00 0.00 0.00 4.79
2341 2792 5.008613 GGCATCGAACCAATTATGCTCTAAA 59.991 40.000 8.17 0.00 43.33 1.85
2347 2798 3.435105 TTGGCATCGAACCAATTATGC 57.565 42.857 16.88 6.96 42.23 3.14
2348 2799 5.410067 ACTTTTGGCATCGAACCAATTATG 58.590 37.500 20.29 12.63 46.25 1.90
2349 2800 5.659440 ACTTTTGGCATCGAACCAATTAT 57.341 34.783 20.29 8.83 46.25 1.28
2350 2801 5.226396 CAACTTTTGGCATCGAACCAATTA 58.774 37.500 20.29 12.45 46.25 1.40
2351 2802 4.057432 CAACTTTTGGCATCGAACCAATT 58.943 39.130 20.29 11.47 46.25 2.32
2352 2803 3.554752 CCAACTTTTGGCATCGAACCAAT 60.555 43.478 20.29 6.70 46.25 3.16
2353 2804 2.223923 CCAACTTTTGGCATCGAACCAA 60.224 45.455 16.88 16.88 45.17 3.67
2354 2805 1.339610 CCAACTTTTGGCATCGAACCA 59.660 47.619 6.45 6.45 45.17 3.67
2355 2806 2.064573 CCAACTTTTGGCATCGAACC 57.935 50.000 0.00 0.00 45.17 3.62
2397 2848 6.040166 AGCAACCAATCTCTAGCCAATATTTG 59.960 38.462 0.00 0.00 0.00 2.32
2398 2849 6.131961 AGCAACCAATCTCTAGCCAATATTT 58.868 36.000 0.00 0.00 0.00 1.40
2399 2850 5.699143 AGCAACCAATCTCTAGCCAATATT 58.301 37.500 0.00 0.00 0.00 1.28
2400 2851 5.316158 AGCAACCAATCTCTAGCCAATAT 57.684 39.130 0.00 0.00 0.00 1.28
2401 2852 4.778213 AGCAACCAATCTCTAGCCAATA 57.222 40.909 0.00 0.00 0.00 1.90
2402 2853 3.659183 AGCAACCAATCTCTAGCCAAT 57.341 42.857 0.00 0.00 0.00 3.16
2403 2854 3.084039 CAAGCAACCAATCTCTAGCCAA 58.916 45.455 0.00 0.00 0.00 4.52
2404 2855 2.715046 CAAGCAACCAATCTCTAGCCA 58.285 47.619 0.00 0.00 0.00 4.75
2405 2856 1.403323 GCAAGCAACCAATCTCTAGCC 59.597 52.381 0.00 0.00 0.00 3.93
2406 2857 1.403323 GGCAAGCAACCAATCTCTAGC 59.597 52.381 0.00 0.00 0.00 3.42
2407 2858 2.715046 TGGCAAGCAACCAATCTCTAG 58.285 47.619 0.00 0.00 33.12 2.43
2408 2859 2.877097 TGGCAAGCAACCAATCTCTA 57.123 45.000 0.00 0.00 33.12 2.43
2409 2860 1.999648 TTGGCAAGCAACCAATCTCT 58.000 45.000 0.00 0.00 42.23 3.10
2415 2866 0.597568 CGAGAATTGGCAAGCAACCA 59.402 50.000 5.96 0.00 34.65 3.67
2416 2867 0.598065 ACGAGAATTGGCAAGCAACC 59.402 50.000 5.96 0.00 0.00 3.77
2417 2868 2.053627 CAACGAGAATTGGCAAGCAAC 58.946 47.619 5.96 0.00 0.00 4.17
2418 2869 1.680735 ACAACGAGAATTGGCAAGCAA 59.319 42.857 5.96 0.00 33.63 3.91
2419 2870 1.266718 GACAACGAGAATTGGCAAGCA 59.733 47.619 5.96 0.00 37.56 3.91
2420 2871 1.266718 TGACAACGAGAATTGGCAAGC 59.733 47.619 5.96 0.00 44.76 4.01
2423 2874 3.411446 AGATTGACAACGAGAATTGGCA 58.589 40.909 0.00 0.00 46.08 4.92
2424 2875 3.436704 TGAGATTGACAACGAGAATTGGC 59.563 43.478 0.00 0.00 38.17 4.52
2425 2876 4.452114 TGTGAGATTGACAACGAGAATTGG 59.548 41.667 0.00 0.00 33.63 3.16
2426 2877 5.596268 TGTGAGATTGACAACGAGAATTG 57.404 39.130 0.00 0.00 35.59 2.32
2427 2878 6.618287 TTTGTGAGATTGACAACGAGAATT 57.382 33.333 0.00 0.00 33.06 2.17
2428 2879 6.618287 TTTTGTGAGATTGACAACGAGAAT 57.382 33.333 0.00 0.00 33.06 2.40
2429 2880 6.093495 ACTTTTTGTGAGATTGACAACGAGAA 59.907 34.615 0.00 0.00 33.06 2.87
2430 2881 5.584649 ACTTTTTGTGAGATTGACAACGAGA 59.415 36.000 0.00 0.00 33.06 4.04
2431 2882 5.810525 ACTTTTTGTGAGATTGACAACGAG 58.189 37.500 0.00 0.00 33.06 4.18
2432 2883 5.811399 ACTTTTTGTGAGATTGACAACGA 57.189 34.783 0.00 0.00 33.06 3.85
2433 2884 5.275881 GCAACTTTTTGTGAGATTGACAACG 60.276 40.000 0.00 0.00 33.06 4.10
2434 2885 5.005682 GGCAACTTTTTGTGAGATTGACAAC 59.994 40.000 0.00 0.00 33.06 3.32
2435 2886 5.108517 GGCAACTTTTTGTGAGATTGACAA 58.891 37.500 0.00 0.00 34.90 3.18
2436 2887 4.159321 TGGCAACTTTTTGTGAGATTGACA 59.841 37.500 0.00 0.00 32.76 3.58
2437 2888 4.681744 TGGCAACTTTTTGTGAGATTGAC 58.318 39.130 0.00 0.00 34.90 3.18
2438 2889 4.998671 TGGCAACTTTTTGTGAGATTGA 57.001 36.364 0.00 0.00 34.90 2.57
2439 2890 6.037391 ACATTTGGCAACTTTTTGTGAGATTG 59.963 34.615 0.00 0.00 34.90 2.67
2440 2891 6.114767 ACATTTGGCAACTTTTTGTGAGATT 58.885 32.000 0.00 0.00 34.90 2.40
2441 2892 5.673514 ACATTTGGCAACTTTTTGTGAGAT 58.326 33.333 0.00 0.00 34.90 2.75
2442 2893 5.083533 ACATTTGGCAACTTTTTGTGAGA 57.916 34.783 0.00 0.00 34.90 3.27
2443 2894 5.447548 CCAACATTTGGCAACTTTTTGTGAG 60.448 40.000 0.00 0.00 45.17 3.51
2444 2895 4.394300 CCAACATTTGGCAACTTTTTGTGA 59.606 37.500 0.00 0.00 45.17 3.58
2445 2896 4.660105 CCAACATTTGGCAACTTTTTGTG 58.340 39.130 0.00 0.00 45.17 3.33
2446 2897 4.961435 CCAACATTTGGCAACTTTTTGT 57.039 36.364 0.00 0.00 45.17 2.83
2458 2909 6.468637 GCAAAGTTAAAAGTTGCCAACATTTG 59.531 34.615 18.18 12.68 34.53 2.32
2459 2910 6.404184 GGCAAAGTTAAAAGTTGCCAACATTT 60.404 34.615 23.42 14.34 36.45 2.32
2460 2911 5.065859 GGCAAAGTTAAAAGTTGCCAACATT 59.934 36.000 23.42 0.60 36.45 2.71
2461 2912 4.574421 GGCAAAGTTAAAAGTTGCCAACAT 59.426 37.500 23.42 0.00 36.45 2.71
2462 2913 3.935828 GGCAAAGTTAAAAGTTGCCAACA 59.064 39.130 23.42 0.00 36.45 3.33
2463 2914 3.935828 TGGCAAAGTTAAAAGTTGCCAAC 59.064 39.130 26.53 0.00 39.87 3.77
2464 2915 4.207891 TGGCAAAGTTAAAAGTTGCCAA 57.792 36.364 26.53 16.11 39.87 4.52
2465 2916 3.895232 TGGCAAAGTTAAAAGTTGCCA 57.105 38.095 25.62 25.62 40.19 4.92
2466 2917 5.065859 ACATTTGGCAAAGTTAAAAGTTGCC 59.934 36.000 22.34 22.34 36.71 4.52
2467 2918 6.117911 ACATTTGGCAAAGTTAAAAGTTGC 57.882 33.333 18.61 9.45 0.00 4.17
2468 2919 6.966066 CCAACATTTGGCAAAGTTAAAAGTTG 59.034 34.615 18.61 18.86 45.17 3.16
2469 2920 7.082700 CCAACATTTGGCAAAGTTAAAAGTT 57.917 32.000 18.61 10.36 45.17 2.66
2470 2921 6.676237 CCAACATTTGGCAAAGTTAAAAGT 57.324 33.333 18.61 5.31 45.17 2.66
2523 2974 5.582689 AAGAGCATAATTGGTTTGCTACC 57.417 39.130 6.90 2.04 46.21 3.18
2524 2975 7.553881 TCTAAGAGCATAATTGGTTTGCTAC 57.446 36.000 6.90 3.20 46.21 3.58
2525 2976 7.445402 GGATCTAAGAGCATAATTGGTTTGCTA 59.555 37.037 6.90 0.00 46.21 3.49
2527 2978 6.039717 TGGATCTAAGAGCATAATTGGTTTGC 59.960 38.462 0.00 0.00 32.62 3.68
2528 2979 7.572523 TGGATCTAAGAGCATAATTGGTTTG 57.427 36.000 0.00 0.00 32.62 2.93
2529 2980 7.173907 CGATGGATCTAAGAGCATAATTGGTTT 59.826 37.037 0.00 0.00 32.62 3.27
2530 2981 6.652481 CGATGGATCTAAGAGCATAATTGGTT 59.348 38.462 0.00 0.00 32.62 3.67
2531 2982 6.014242 TCGATGGATCTAAGAGCATAATTGGT 60.014 38.462 0.00 0.00 35.95 3.67
2532 2983 6.401394 TCGATGGATCTAAGAGCATAATTGG 58.599 40.000 0.00 0.00 0.00 3.16
2533 2984 7.224362 GGATCGATGGATCTAAGAGCATAATTG 59.776 40.741 16.17 0.00 46.77 2.32
2534 2985 7.271511 GGATCGATGGATCTAAGAGCATAATT 58.728 38.462 16.17 0.00 46.77 1.40
2535 2986 6.460814 CGGATCGATGGATCTAAGAGCATAAT 60.461 42.308 16.17 0.00 46.77 1.28
2536 2987 5.163612 CGGATCGATGGATCTAAGAGCATAA 60.164 44.000 16.17 0.00 46.77 1.90
2537 2988 4.336713 CGGATCGATGGATCTAAGAGCATA 59.663 45.833 16.17 0.00 46.77 3.14
2538 2989 3.130164 CGGATCGATGGATCTAAGAGCAT 59.870 47.826 16.17 0.00 46.77 3.79
2539 2990 2.489722 CGGATCGATGGATCTAAGAGCA 59.510 50.000 16.17 0.00 46.77 4.26
2540 2991 2.490115 ACGGATCGATGGATCTAAGAGC 59.510 50.000 16.17 0.00 46.77 4.09
2541 2992 4.349663 GACGGATCGATGGATCTAAGAG 57.650 50.000 16.17 6.83 46.77 2.85
2559 3010 4.201783 TGCATATATAGACATCGACCGACG 60.202 45.833 0.00 0.00 44.09 5.12
2567 3018 7.800380 GCAAACACAACTGCATATATAGACATC 59.200 37.037 0.00 0.00 38.48 3.06
2573 3024 6.828273 AGAAGGCAAACACAACTGCATATATA 59.172 34.615 0.00 0.00 40.46 0.86
2574 3025 5.653769 AGAAGGCAAACACAACTGCATATAT 59.346 36.000 0.00 0.00 40.46 0.86
2575 3026 5.009631 AGAAGGCAAACACAACTGCATATA 58.990 37.500 0.00 0.00 40.46 0.86
2576 3027 3.828451 AGAAGGCAAACACAACTGCATAT 59.172 39.130 0.00 0.00 40.46 1.78
2597 3048 3.315191 CCTAACCGAATTTATGGCACCAG 59.685 47.826 0.00 0.00 0.00 4.00
2613 3064 1.792006 CCACACGTGAAGTCCTAACC 58.208 55.000 25.01 0.00 0.00 2.85
2617 3068 0.317479 GTAGCCACACGTGAAGTCCT 59.683 55.000 25.01 12.54 0.00 3.85
2626 3077 1.922135 GCACCCAATGTAGCCACACG 61.922 60.000 0.00 0.00 37.54 4.49
2631 3082 1.595093 GGTGTGCACCCAATGTAGCC 61.595 60.000 15.69 0.00 45.68 3.93
2651 3102 3.070734 GCTAGGCTGATCTTGATCCTTGA 59.929 47.826 0.00 0.00 0.00 3.02
2699 3150 1.993370 ACTTCATTTAGAGCGTGCGAC 59.007 47.619 0.00 0.00 0.00 5.19
2701 3152 3.179830 AGTACTTCATTTAGAGCGTGCG 58.820 45.455 0.00 0.00 0.00 5.34
2702 3153 5.532025 AAAGTACTTCATTTAGAGCGTGC 57.468 39.130 8.95 0.00 0.00 5.34
2776 3227 2.008543 GCGCCATGAGATCACTGAACA 61.009 52.381 0.00 0.00 0.00 3.18
2779 3230 1.144716 GGCGCCATGAGATCACTGA 59.855 57.895 24.80 0.00 0.00 3.41
2780 3231 1.890979 GGGCGCCATGAGATCACTG 60.891 63.158 30.85 0.00 0.00 3.66
2781 3232 2.037620 GAGGGCGCCATGAGATCACT 62.038 60.000 30.85 12.72 0.00 3.41
2782 3233 1.596477 GAGGGCGCCATGAGATCAC 60.596 63.158 30.85 7.16 0.00 3.06
2783 3234 2.824546 GAGGGCGCCATGAGATCA 59.175 61.111 30.85 0.00 0.00 2.92
2784 3235 2.356793 CGAGGGCGCCATGAGATC 60.357 66.667 30.85 14.12 0.00 2.75
2785 3236 1.762522 ATTCGAGGGCGCCATGAGAT 61.763 55.000 30.85 13.33 37.46 2.75
2786 3237 2.434843 ATTCGAGGGCGCCATGAGA 61.435 57.895 30.85 20.05 37.46 3.27
2787 3238 2.109799 ATTCGAGGGCGCCATGAG 59.890 61.111 30.85 17.86 37.46 2.90
2788 3239 2.203056 CATTCGAGGGCGCCATGA 60.203 61.111 30.85 19.51 37.46 3.07
2789 3240 3.282157 CCATTCGAGGGCGCCATG 61.282 66.667 30.85 21.85 37.46 3.66
2790 3241 4.569180 CCCATTCGAGGGCGCCAT 62.569 66.667 30.85 24.69 43.10 4.40
2797 3248 1.883021 GTGTTTGCCCCATTCGAGG 59.117 57.895 0.00 0.00 0.00 4.63
2798 3249 1.234615 ACGTGTTTGCCCCATTCGAG 61.235 55.000 0.00 0.00 0.00 4.04
2799 3250 1.228003 ACGTGTTTGCCCCATTCGA 60.228 52.632 0.00 0.00 0.00 3.71
2800 3251 1.209127 GACGTGTTTGCCCCATTCG 59.791 57.895 0.00 0.00 0.00 3.34
2801 3252 1.209127 CGACGTGTTTGCCCCATTC 59.791 57.895 0.00 0.00 0.00 2.67
2802 3253 2.914908 GCGACGTGTTTGCCCCATT 61.915 57.895 0.00 0.00 0.00 3.16
2803 3254 3.361977 GCGACGTGTTTGCCCCAT 61.362 61.111 0.00 0.00 0.00 4.00
2804 3255 4.858680 TGCGACGTGTTTGCCCCA 62.859 61.111 0.00 0.00 0.00 4.96
2805 3256 2.999363 CTTTGCGACGTGTTTGCCCC 62.999 60.000 0.00 0.00 0.00 5.80
2806 3257 1.657181 CTTTGCGACGTGTTTGCCC 60.657 57.895 0.00 0.00 0.00 5.36
2807 3258 0.928451 GACTTTGCGACGTGTTTGCC 60.928 55.000 0.00 0.00 0.00 4.52
2808 3259 0.247894 TGACTTTGCGACGTGTTTGC 60.248 50.000 0.00 0.00 0.00 3.68
2809 3260 1.201976 TGTGACTTTGCGACGTGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
2810 3261 1.062002 CTGTGACTTTGCGACGTGTTT 59.938 47.619 0.00 0.00 0.00 2.83
2811 3262 0.650512 CTGTGACTTTGCGACGTGTT 59.349 50.000 0.00 0.00 0.00 3.32
2812 3263 1.762222 GCTGTGACTTTGCGACGTGT 61.762 55.000 0.00 0.00 0.00 4.49
2813 3264 1.083401 GCTGTGACTTTGCGACGTG 60.083 57.895 0.00 0.00 0.00 4.49
2814 3265 0.810031 AAGCTGTGACTTTGCGACGT 60.810 50.000 0.00 0.00 0.00 4.34
2815 3266 1.136690 TAAGCTGTGACTTTGCGACG 58.863 50.000 0.00 0.00 0.00 5.12
2816 3267 3.678072 TGTATAAGCTGTGACTTTGCGAC 59.322 43.478 0.00 0.00 0.00 5.19
2817 3268 3.920446 TGTATAAGCTGTGACTTTGCGA 58.080 40.909 0.00 0.00 0.00 5.10
2818 3269 4.864916 ATGTATAAGCTGTGACTTTGCG 57.135 40.909 0.00 0.00 0.00 4.85
2819 3270 6.381801 ACAAATGTATAAGCTGTGACTTTGC 58.618 36.000 0.00 0.00 0.00 3.68
2820 3271 7.584108 TGACAAATGTATAAGCTGTGACTTTG 58.416 34.615 0.00 0.00 0.00 2.77
2821 3272 7.744087 TGACAAATGTATAAGCTGTGACTTT 57.256 32.000 0.00 0.00 0.00 2.66
2822 3273 7.445402 ACTTGACAAATGTATAAGCTGTGACTT 59.555 33.333 8.92 0.00 0.00 3.01
2823 3274 6.936900 ACTTGACAAATGTATAAGCTGTGACT 59.063 34.615 8.92 0.00 0.00 3.41
2824 3275 7.017645 CACTTGACAAATGTATAAGCTGTGAC 58.982 38.462 8.92 0.00 0.00 3.67
2825 3276 6.710295 ACACTTGACAAATGTATAAGCTGTGA 59.290 34.615 0.00 0.00 0.00 3.58
2826 3277 6.902341 ACACTTGACAAATGTATAAGCTGTG 58.098 36.000 0.00 0.00 0.00 3.66
2827 3278 7.510549 AACACTTGACAAATGTATAAGCTGT 57.489 32.000 2.21 9.32 0.00 4.40
2828 3279 8.292448 AGAAACACTTGACAAATGTATAAGCTG 58.708 33.333 2.21 8.91 0.00 4.24
2829 3280 8.396272 AGAAACACTTGACAAATGTATAAGCT 57.604 30.769 2.21 0.00 0.00 3.74
2830 3281 9.463443 AAAGAAACACTTGACAAATGTATAAGC 57.537 29.630 2.21 0.00 38.98 3.09
2834 3285 9.965824 CCTTAAAGAAACACTTGACAAATGTAT 57.034 29.630 2.21 0.00 38.98 2.29
2835 3286 7.918562 GCCTTAAAGAAACACTTGACAAATGTA 59.081 33.333 2.21 0.00 38.98 2.29
2836 3287 6.756542 GCCTTAAAGAAACACTTGACAAATGT 59.243 34.615 0.00 0.00 38.98 2.71
2837 3288 6.200854 GGCCTTAAAGAAACACTTGACAAATG 59.799 38.462 0.00 0.00 38.98 2.32
2838 3289 6.280643 GGCCTTAAAGAAACACTTGACAAAT 58.719 36.000 0.00 0.00 38.98 2.32
2839 3290 5.656480 GGCCTTAAAGAAACACTTGACAAA 58.344 37.500 0.00 0.00 38.98 2.83
2840 3291 4.201970 CGGCCTTAAAGAAACACTTGACAA 60.202 41.667 0.00 0.00 38.98 3.18
2841 3292 3.314080 CGGCCTTAAAGAAACACTTGACA 59.686 43.478 0.00 0.00 38.98 3.58
2842 3293 3.304458 CCGGCCTTAAAGAAACACTTGAC 60.304 47.826 0.00 0.00 38.98 3.18
2843 3294 2.882137 CCGGCCTTAAAGAAACACTTGA 59.118 45.455 0.00 0.00 38.98 3.02
2844 3295 2.607038 GCCGGCCTTAAAGAAACACTTG 60.607 50.000 18.11 0.00 38.98 3.16
2845 3296 1.611977 GCCGGCCTTAAAGAAACACTT 59.388 47.619 18.11 0.00 40.98 3.16
2846 3297 1.244816 GCCGGCCTTAAAGAAACACT 58.755 50.000 18.11 0.00 0.00 3.55
2847 3298 0.242825 GGCCGGCCTTAAAGAAACAC 59.757 55.000 38.76 6.46 0.00 3.32
2848 3299 0.111639 AGGCCGGCCTTAAAGAAACA 59.888 50.000 42.84 0.00 45.70 2.83
2849 3300 2.957060 AGGCCGGCCTTAAAGAAAC 58.043 52.632 42.84 13.47 45.70 2.78
2860 3311 2.265467 TTATCTGGGTGAAGGCCGGC 62.265 60.000 21.18 21.18 0.00 6.13
2861 3312 0.474184 ATTATCTGGGTGAAGGCCGG 59.526 55.000 0.00 0.00 0.00 6.13
2862 3313 2.348411 AATTATCTGGGTGAAGGCCG 57.652 50.000 0.00 0.00 0.00 6.13
2863 3314 4.532834 TGTTAATTATCTGGGTGAAGGCC 58.467 43.478 0.00 0.00 0.00 5.19
2864 3315 5.450550 GCTTGTTAATTATCTGGGTGAAGGC 60.451 44.000 0.00 0.00 0.00 4.35
2865 3316 5.220854 CGCTTGTTAATTATCTGGGTGAAGG 60.221 44.000 0.00 0.00 0.00 3.46
2866 3317 5.730568 GCGCTTGTTAATTATCTGGGTGAAG 60.731 44.000 0.00 0.00 0.00 3.02
2867 3318 4.095782 GCGCTTGTTAATTATCTGGGTGAA 59.904 41.667 0.00 0.00 0.00 3.18
2868 3319 3.625764 GCGCTTGTTAATTATCTGGGTGA 59.374 43.478 0.00 0.00 0.00 4.02
2869 3320 3.376859 TGCGCTTGTTAATTATCTGGGTG 59.623 43.478 9.73 0.00 0.00 4.61
2870 3321 3.616219 TGCGCTTGTTAATTATCTGGGT 58.384 40.909 9.73 0.00 0.00 4.51
2871 3322 4.036734 ACATGCGCTTGTTAATTATCTGGG 59.963 41.667 21.97 0.00 0.00 4.45
2872 3323 4.971830 CACATGCGCTTGTTAATTATCTGG 59.028 41.667 24.68 7.33 0.00 3.86
2873 3324 5.572211 ACACATGCGCTTGTTAATTATCTG 58.428 37.500 24.68 13.29 0.00 2.90
2874 3325 5.818136 ACACATGCGCTTGTTAATTATCT 57.182 34.783 24.68 0.00 0.00 1.98
2875 3326 6.685767 CAAACACATGCGCTTGTTAATTATC 58.314 36.000 24.68 0.00 34.82 1.75
2876 3327 5.062058 GCAAACACATGCGCTTGTTAATTAT 59.938 36.000 24.68 7.05 34.82 1.28
2877 3328 4.384247 GCAAACACATGCGCTTGTTAATTA 59.616 37.500 24.68 0.00 34.82 1.40
2878 3329 3.184178 GCAAACACATGCGCTTGTTAATT 59.816 39.130 24.68 16.35 34.82 1.40
2879 3330 2.730928 GCAAACACATGCGCTTGTTAAT 59.269 40.909 24.68 11.67 34.82 1.40
2880 3331 2.123342 GCAAACACATGCGCTTGTTAA 58.877 42.857 24.68 0.00 34.82 2.01
2881 3332 1.764851 GCAAACACATGCGCTTGTTA 58.235 45.000 24.68 0.00 34.82 2.41
2882 3333 2.592212 GCAAACACATGCGCTTGTT 58.408 47.368 24.68 19.02 37.55 2.83
2883 3334 4.324424 GCAAACACATGCGCTTGT 57.676 50.000 21.97 21.97 36.45 3.16
2889 3340 1.001048 TCAGCTGAAGCAAACACATGC 60.001 47.619 15.67 0.00 46.78 4.06
2890 3341 3.570926 ATCAGCTGAAGCAAACACATG 57.429 42.857 22.50 0.00 45.16 3.21
2891 3342 3.128242 GCTATCAGCTGAAGCAAACACAT 59.872 43.478 29.82 13.03 45.16 3.21
2892 3343 2.485426 GCTATCAGCTGAAGCAAACACA 59.515 45.455 29.82 6.48 45.16 3.72
2893 3344 2.159462 GGCTATCAGCTGAAGCAAACAC 60.159 50.000 32.65 20.65 45.16 3.32
2894 3345 2.086869 GGCTATCAGCTGAAGCAAACA 58.913 47.619 32.65 10.56 45.16 2.83
2895 3346 2.354199 GAGGCTATCAGCTGAAGCAAAC 59.646 50.000 32.65 24.10 45.16 2.93
2896 3347 2.026915 TGAGGCTATCAGCTGAAGCAAA 60.027 45.455 32.65 22.22 45.16 3.68
2897 3348 1.556451 TGAGGCTATCAGCTGAAGCAA 59.444 47.619 32.65 22.45 45.16 3.91
2898 3349 1.197812 TGAGGCTATCAGCTGAAGCA 58.802 50.000 32.65 20.25 45.16 3.91
2899 3350 1.939255 GTTGAGGCTATCAGCTGAAGC 59.061 52.381 28.27 28.27 41.99 3.86
2900 3351 2.935201 GTGTTGAGGCTATCAGCTGAAG 59.065 50.000 22.50 18.94 41.99 3.02
2901 3352 2.568956 AGTGTTGAGGCTATCAGCTGAA 59.431 45.455 22.50 9.34 41.99 3.02
2902 3353 2.093816 CAGTGTTGAGGCTATCAGCTGA 60.094 50.000 20.79 20.79 41.99 4.26
2903 3354 2.277969 CAGTGTTGAGGCTATCAGCTG 58.722 52.381 7.63 7.63 41.99 4.24
2904 3355 1.905215 ACAGTGTTGAGGCTATCAGCT 59.095 47.619 0.00 0.00 41.99 4.24
2905 3356 2.393271 ACAGTGTTGAGGCTATCAGC 57.607 50.000 0.00 0.59 39.68 4.26
2906 3357 3.438087 CCAAACAGTGTTGAGGCTATCAG 59.562 47.826 9.79 0.00 39.68 2.90
2907 3358 3.072330 TCCAAACAGTGTTGAGGCTATCA 59.928 43.478 18.42 3.42 35.62 2.15
2908 3359 3.674997 TCCAAACAGTGTTGAGGCTATC 58.325 45.455 18.42 0.00 0.00 2.08
2909 3360 3.788227 TCCAAACAGTGTTGAGGCTAT 57.212 42.857 18.42 0.00 0.00 2.97
2910 3361 3.788227 ATCCAAACAGTGTTGAGGCTA 57.212 42.857 18.42 7.08 0.00 3.93
2911 3362 2.664402 ATCCAAACAGTGTTGAGGCT 57.336 45.000 18.42 9.67 0.00 4.58
2912 3363 4.072131 TCTAATCCAAACAGTGTTGAGGC 58.928 43.478 18.42 0.00 0.00 4.70
2913 3364 4.152402 CGTCTAATCCAAACAGTGTTGAGG 59.848 45.833 9.79 14.57 0.00 3.86
2914 3365 4.377431 GCGTCTAATCCAAACAGTGTTGAG 60.377 45.833 9.79 5.52 0.00 3.02
2915 3366 3.496884 GCGTCTAATCCAAACAGTGTTGA 59.503 43.478 9.79 3.76 0.00 3.18
2916 3367 3.664276 CGCGTCTAATCCAAACAGTGTTG 60.664 47.826 9.79 4.00 0.00 3.33
2917 3368 2.478894 CGCGTCTAATCCAAACAGTGTT 59.521 45.455 1.64 1.64 0.00 3.32
2918 3369 2.066262 CGCGTCTAATCCAAACAGTGT 58.934 47.619 0.00 0.00 0.00 3.55
2919 3370 1.201921 GCGCGTCTAATCCAAACAGTG 60.202 52.381 8.43 0.00 0.00 3.66
2920 3371 1.076332 GCGCGTCTAATCCAAACAGT 58.924 50.000 8.43 0.00 0.00 3.55
2921 3372 0.373716 GGCGCGTCTAATCCAAACAG 59.626 55.000 8.43 0.00 0.00 3.16
2922 3373 1.022451 GGGCGCGTCTAATCCAAACA 61.022 55.000 11.94 0.00 0.00 2.83
2923 3374 1.719709 GGGCGCGTCTAATCCAAAC 59.280 57.895 11.94 0.00 0.00 2.93
2924 3375 1.812093 CGGGCGCGTCTAATCCAAA 60.812 57.895 15.94 0.00 0.00 3.28
2925 3376 2.202824 CGGGCGCGTCTAATCCAA 60.203 61.111 15.94 0.00 0.00 3.53
2926 3377 4.884257 GCGGGCGCGTCTAATCCA 62.884 66.667 24.70 0.00 0.00 3.41
2939 3390 2.280389 ATGCATGAGTAGCGCGGG 60.280 61.111 8.83 0.00 33.85 6.13
2940 3391 2.933666 CATGCATGAGTAGCGCGG 59.066 61.111 22.59 0.00 33.85 6.46
2941 3392 1.838568 ATGCATGCATGAGTAGCGCG 61.839 55.000 31.74 0.00 35.03 6.86
2942 3393 0.110328 GATGCATGCATGAGTAGCGC 60.110 55.000 36.73 16.24 36.70 5.92
2943 3394 1.509703 AGATGCATGCATGAGTAGCG 58.490 50.000 36.73 1.83 36.70 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.