Multiple sequence alignment - TraesCS6A01G243100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G243100 chr6A 100.000 3810 0 0 1 3810 454682656 454678847 0.000000e+00 7036
1 TraesCS6A01G243100 chr6A 97.500 280 5 1 460 737 153681189 153681468 9.580000e-131 477
2 TraesCS6A01G243100 chr6B 93.795 2885 125 22 947 3810 507467780 507470631 0.000000e+00 4287
3 TraesCS6A01G243100 chr6B 92.174 230 11 5 144 371 507467242 507467466 6.140000e-83 318
4 TraesCS6A01G243100 chr6D 96.703 1274 32 2 1557 2829 317082088 317080824 0.000000e+00 2111
5 TraesCS6A01G243100 chr6D 96.142 985 29 6 2828 3810 317080787 317079810 0.000000e+00 1600
6 TraesCS6A01G243100 chr6D 92.298 831 27 13 733 1533 317082962 317082139 0.000000e+00 1146
7 TraesCS6A01G243100 chr6D 91.925 322 12 8 143 454 317083288 317082971 4.520000e-119 438
8 TraesCS6A01G243100 chr3B 97.193 285 6 1 456 738 663556420 663556704 7.400000e-132 481
9 TraesCS6A01G243100 chr3B 96.154 286 9 1 456 739 507285040 507284755 2.070000e-127 466
10 TraesCS6A01G243100 chr1B 97.143 280 6 1 460 737 615614870 615614591 4.460000e-129 472
11 TraesCS6A01G243100 chr1B 96.491 285 8 1 456 738 146117199 146117483 1.600000e-128 470
12 TraesCS6A01G243100 chr5A 96.194 289 7 3 460 744 34705556 34705268 1.600000e-128 470
13 TraesCS6A01G243100 chr4A 96.809 282 7 1 457 736 572648975 572648694 1.600000e-128 470
14 TraesCS6A01G243100 chr2B 96.809 282 7 1 459 738 86540868 86540587 1.600000e-128 470
15 TraesCS6A01G243100 chr1A 96.167 287 8 2 459 742 342385966 342386252 2.070000e-127 466
16 TraesCS6A01G243100 chr7A 96.341 82 3 0 259 340 673830402 673830321 6.640000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G243100 chr6A 454678847 454682656 3809 True 7036.00 7036 100.0000 1 3810 1 chr6A.!!$R1 3809
1 TraesCS6A01G243100 chr6B 507467242 507470631 3389 False 2302.50 4287 92.9845 144 3810 2 chr6B.!!$F1 3666
2 TraesCS6A01G243100 chr6D 317079810 317083288 3478 True 1323.75 2111 94.2670 143 3810 4 chr6D.!!$R1 3667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.178301 CGCCTAGGAGGAGGAAAACC 59.822 60.0 14.75 0.0 37.67 3.27 F
1668 1798 0.179240 CTTTGCTGCATGTCGTCGTC 60.179 55.0 1.84 0.0 0.00 4.20 F
2380 2510 0.673644 CCATCAAGAACTTCGCCGGT 60.674 55.0 1.90 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1868 1.502190 CATGAGCTGCTGCAGTGTG 59.498 57.895 28.50 17.99 42.74 3.82 R
2800 2930 1.191944 CTGTATGCGACTACTGCACG 58.808 55.000 0.00 0.00 46.57 5.34 R
3187 3356 4.578928 GGAAAAACAGAGACTTGTTGCCTA 59.421 41.667 4.48 0.00 40.24 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.130561 GTAAAACACGATCAGGGCAGC 59.869 52.381 0.00 0.00 0.00 5.25
31 32 1.244019 AAAACACGATCAGGGCAGCC 61.244 55.000 1.26 1.26 0.00 4.85
32 33 3.958147 AACACGATCAGGGCAGCCG 62.958 63.158 5.00 0.00 0.00 5.52
36 37 3.564218 GATCAGGGCAGCCGGGAT 61.564 66.667 14.61 14.61 0.00 3.85
37 38 3.543536 GATCAGGGCAGCCGGGATC 62.544 68.421 21.67 21.67 30.69 3.36
41 42 4.209866 GGGCAGCCGGGATCCAAT 62.210 66.667 15.23 0.00 0.00 3.16
42 43 2.123726 GGCAGCCGGGATCCAATT 60.124 61.111 15.23 0.00 0.00 2.32
43 44 2.492773 GGCAGCCGGGATCCAATTG 61.493 63.158 15.23 7.21 0.00 2.32
44 45 1.754234 GCAGCCGGGATCCAATTGT 60.754 57.895 15.23 0.00 0.00 2.71
45 46 0.465460 GCAGCCGGGATCCAATTGTA 60.465 55.000 15.23 0.00 0.00 2.41
46 47 1.819305 GCAGCCGGGATCCAATTGTAT 60.819 52.381 15.23 0.00 0.00 2.29
47 48 1.881973 CAGCCGGGATCCAATTGTATG 59.118 52.381 15.23 0.00 0.00 2.39
48 49 0.598065 GCCGGGATCCAATTGTATGC 59.402 55.000 15.23 0.00 0.00 3.14
49 50 0.874390 CCGGGATCCAATTGTATGCG 59.126 55.000 15.23 4.13 0.00 4.73
50 51 0.874390 CGGGATCCAATTGTATGCGG 59.126 55.000 15.23 0.10 0.00 5.69
51 52 1.247567 GGGATCCAATTGTATGCGGG 58.752 55.000 15.23 0.00 0.00 6.13
52 53 1.478654 GGGATCCAATTGTATGCGGGT 60.479 52.381 15.23 0.00 0.00 5.28
53 54 2.224670 GGGATCCAATTGTATGCGGGTA 60.225 50.000 15.23 0.00 0.00 3.69
54 55 3.561313 GGGATCCAATTGTATGCGGGTAT 60.561 47.826 15.23 0.00 0.00 2.73
55 56 4.323945 GGGATCCAATTGTATGCGGGTATA 60.324 45.833 15.23 0.00 0.00 1.47
56 57 4.876107 GGATCCAATTGTATGCGGGTATAG 59.124 45.833 6.95 0.00 0.00 1.31
57 58 5.338056 GGATCCAATTGTATGCGGGTATAGA 60.338 44.000 6.95 0.00 0.00 1.98
58 59 4.890088 TCCAATTGTATGCGGGTATAGAC 58.110 43.478 4.43 0.00 0.00 2.59
59 60 4.591498 TCCAATTGTATGCGGGTATAGACT 59.409 41.667 4.43 0.00 0.00 3.24
60 61 4.929808 CCAATTGTATGCGGGTATAGACTC 59.070 45.833 4.43 0.00 0.00 3.36
61 62 5.510690 CCAATTGTATGCGGGTATAGACTCA 60.511 44.000 4.43 0.00 0.00 3.41
62 63 5.801531 ATTGTATGCGGGTATAGACTCAA 57.198 39.130 0.00 0.00 0.00 3.02
63 64 5.601583 TTGTATGCGGGTATAGACTCAAA 57.398 39.130 0.00 0.00 0.00 2.69
64 65 5.196341 TGTATGCGGGTATAGACTCAAAG 57.804 43.478 0.00 0.00 0.00 2.77
65 66 3.753294 ATGCGGGTATAGACTCAAAGG 57.247 47.619 0.00 0.00 0.00 3.11
66 67 1.138266 TGCGGGTATAGACTCAAAGGC 59.862 52.381 0.00 0.00 0.00 4.35
67 68 1.868519 GCGGGTATAGACTCAAAGGCG 60.869 57.143 0.00 0.00 0.00 5.52
68 69 1.679680 CGGGTATAGACTCAAAGGCGA 59.320 52.381 0.00 0.00 0.00 5.54
69 70 2.543238 CGGGTATAGACTCAAAGGCGAC 60.543 54.545 0.00 0.00 0.00 5.19
70 71 2.429610 GGGTATAGACTCAAAGGCGACA 59.570 50.000 0.00 0.00 0.00 4.35
71 72 3.118884 GGGTATAGACTCAAAGGCGACAA 60.119 47.826 0.00 0.00 0.00 3.18
72 73 4.113354 GGTATAGACTCAAAGGCGACAAG 58.887 47.826 0.00 0.00 0.00 3.16
73 74 4.142227 GGTATAGACTCAAAGGCGACAAGA 60.142 45.833 0.00 0.00 0.00 3.02
74 75 2.910688 AGACTCAAAGGCGACAAGAA 57.089 45.000 0.00 0.00 0.00 2.52
75 76 3.194005 AGACTCAAAGGCGACAAGAAA 57.806 42.857 0.00 0.00 0.00 2.52
76 77 3.744660 AGACTCAAAGGCGACAAGAAAT 58.255 40.909 0.00 0.00 0.00 2.17
77 78 3.748568 AGACTCAAAGGCGACAAGAAATC 59.251 43.478 0.00 0.00 0.00 2.17
78 79 2.480419 ACTCAAAGGCGACAAGAAATCG 59.520 45.455 0.00 0.00 42.55 3.34
85 86 2.579207 CGACAAGAAATCGCCTAGGA 57.421 50.000 14.75 0.00 31.96 2.94
86 87 2.464865 CGACAAGAAATCGCCTAGGAG 58.535 52.381 14.75 10.25 31.96 3.69
87 88 2.799917 CGACAAGAAATCGCCTAGGAGG 60.800 54.545 14.75 3.05 38.80 4.30
88 89 2.431057 GACAAGAAATCGCCTAGGAGGA 59.569 50.000 14.75 9.35 37.67 3.71
89 90 2.432510 ACAAGAAATCGCCTAGGAGGAG 59.567 50.000 14.75 0.00 37.67 3.69
90 91 1.710816 AGAAATCGCCTAGGAGGAGG 58.289 55.000 14.75 0.00 37.67 4.30
91 92 1.218196 AGAAATCGCCTAGGAGGAGGA 59.782 52.381 14.75 1.00 37.67 3.71
92 93 2.040178 GAAATCGCCTAGGAGGAGGAA 58.960 52.381 14.75 0.00 37.67 3.36
93 94 2.176247 AATCGCCTAGGAGGAGGAAA 57.824 50.000 14.75 0.00 37.67 3.13
94 95 2.176247 ATCGCCTAGGAGGAGGAAAA 57.824 50.000 14.75 0.00 37.67 2.29
95 96 1.192428 TCGCCTAGGAGGAGGAAAAC 58.808 55.000 14.75 0.00 37.67 2.43
96 97 0.178301 CGCCTAGGAGGAGGAAAACC 59.822 60.000 14.75 0.00 37.67 3.27
97 98 0.547075 GCCTAGGAGGAGGAAAACCC 59.453 60.000 14.75 0.00 37.67 4.11
119 120 2.844839 CCGAAGGCCTAGGGGAGG 60.845 72.222 17.21 6.51 46.14 4.30
132 133 6.301169 CCTAGGGGAGGTATTGATTGTATC 57.699 45.833 0.00 0.00 40.98 2.24
133 134 6.026186 CCTAGGGGAGGTATTGATTGTATCT 58.974 44.000 0.00 0.00 40.98 1.98
134 135 7.189794 CCTAGGGGAGGTATTGATTGTATCTA 58.810 42.308 0.00 0.00 40.98 1.98
135 136 7.846823 CCTAGGGGAGGTATTGATTGTATCTAT 59.153 40.741 0.00 0.00 40.98 1.98
136 137 7.741554 AGGGGAGGTATTGATTGTATCTATC 57.258 40.000 0.00 0.00 0.00 2.08
137 138 7.491681 AGGGGAGGTATTGATTGTATCTATCT 58.508 38.462 0.00 0.00 0.00 1.98
138 139 8.633724 AGGGGAGGTATTGATTGTATCTATCTA 58.366 37.037 0.00 0.00 0.00 1.98
139 140 9.440761 GGGGAGGTATTGATTGTATCTATCTAT 57.559 37.037 0.00 0.00 0.00 1.98
201 202 1.126421 CTACGTACACAGCACTCGCG 61.126 60.000 0.00 0.00 45.49 5.87
246 248 3.187700 CAAAACGAAGACCGGGAGATAG 58.812 50.000 6.32 0.00 43.93 2.08
274 276 3.489229 GCGTGTCTGCATATACTCACTCA 60.489 47.826 0.00 0.00 34.15 3.41
275 277 4.038361 CGTGTCTGCATATACTCACTCAC 58.962 47.826 0.00 0.00 0.00 3.51
276 278 4.363999 GTGTCTGCATATACTCACTCACC 58.636 47.826 0.00 0.00 0.00 4.02
277 279 3.384789 TGTCTGCATATACTCACTCACCC 59.615 47.826 0.00 0.00 0.00 4.61
278 280 3.639094 GTCTGCATATACTCACTCACCCT 59.361 47.826 0.00 0.00 0.00 4.34
369 406 2.730382 ACCAAACCCCCGAAATACATC 58.270 47.619 0.00 0.00 0.00 3.06
433 470 6.825721 CCACTTTCCTTAGCAGTATCATTCTT 59.174 38.462 0.00 0.00 0.00 2.52
435 472 7.011857 CACTTTCCTTAGCAGTATCATTCTTCC 59.988 40.741 0.00 0.00 0.00 3.46
461 504 2.030274 GCTTTGCCTTTCGCCTTTCTTA 60.030 45.455 0.00 0.00 36.24 2.10
462 505 3.826466 CTTTGCCTTTCGCCTTTCTTAG 58.174 45.455 0.00 0.00 36.24 2.18
474 517 4.762289 CCTTTCTTAGGCTGGTCATAGT 57.238 45.455 0.00 0.00 37.17 2.12
475 518 4.446371 CCTTTCTTAGGCTGGTCATAGTG 58.554 47.826 0.00 0.00 37.17 2.74
476 519 4.446371 CTTTCTTAGGCTGGTCATAGTGG 58.554 47.826 0.00 0.00 0.00 4.00
477 520 3.398318 TCTTAGGCTGGTCATAGTGGA 57.602 47.619 0.00 0.00 0.00 4.02
478 521 3.300388 TCTTAGGCTGGTCATAGTGGAG 58.700 50.000 0.00 0.00 0.00 3.86
479 522 3.052869 TCTTAGGCTGGTCATAGTGGAGA 60.053 47.826 0.00 0.00 0.00 3.71
480 523 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
481 524 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
482 525 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
483 526 3.031736 GGCTGGTCATAGTGGAGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
484 527 3.181474 GGCTGGTCATAGTGGAGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
485 528 3.702045 GCTGGTCATAGTGGAGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
486 529 4.160626 GCTGGTCATAGTGGAGAGTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
487 530 5.360144 GCTGGTCATAGTGGAGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
488 531 6.460399 GCTGGTCATAGTGGAGAGTAACTTAG 60.460 46.154 0.00 0.00 0.00 2.18
489 532 6.728411 TGGTCATAGTGGAGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
490 533 6.602406 TGGTCATAGTGGAGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
491 534 6.602406 GGTCATAGTGGAGAGTAACTTAGACA 59.398 42.308 0.00 0.00 33.86 3.41
492 535 7.122353 GGTCATAGTGGAGAGTAACTTAGACAA 59.878 40.741 0.00 0.00 33.86 3.18
493 536 8.185505 GTCATAGTGGAGAGTAACTTAGACAAG 58.814 40.741 0.00 0.00 37.81 3.16
495 538 9.175312 CATAGTGGAGAGTAACTTAGACAAGTA 57.825 37.037 0.00 0.00 44.41 2.24
496 539 9.750783 ATAGTGGAGAGTAACTTAGACAAGTAA 57.249 33.333 0.00 0.00 44.41 2.24
497 540 7.884257 AGTGGAGAGTAACTTAGACAAGTAAC 58.116 38.462 0.00 0.00 44.41 2.50
498 541 7.504911 AGTGGAGAGTAACTTAGACAAGTAACA 59.495 37.037 0.00 0.00 44.41 2.41
499 542 8.305317 GTGGAGAGTAACTTAGACAAGTAACAT 58.695 37.037 0.00 0.00 44.41 2.71
500 543 9.524496 TGGAGAGTAACTTAGACAAGTAACATA 57.476 33.333 0.00 0.00 44.41 2.29
526 569 9.917887 ATGTGTTACTAGTCTATGTTACTACCT 57.082 33.333 0.00 0.00 0.00 3.08
527 570 9.745018 TGTGTTACTAGTCTATGTTACTACCTT 57.255 33.333 0.00 0.00 0.00 3.50
529 572 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
535 578 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
536 579 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
537 580 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
538 581 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
543 586 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
544 587 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
545 588 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
546 589 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
547 590 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
548 591 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
549 592 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
550 593 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
551 594 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
552 595 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
553 596 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
554 597 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
555 598 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
556 599 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
557 600 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
576 619 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
577 620 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
578 621 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
586 629 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
587 630 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
588 631 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
589 632 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
590 633 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
601 644 9.665719 TTACTTTGTAGACTCATTATGCATTGA 57.334 29.630 3.54 2.16 0.00 2.57
602 645 8.565896 ACTTTGTAGACTCATTATGCATTGAA 57.434 30.769 3.54 0.00 0.00 2.69
603 646 9.013229 ACTTTGTAGACTCATTATGCATTGAAA 57.987 29.630 3.54 0.00 0.00 2.69
604 647 9.844790 CTTTGTAGACTCATTATGCATTGAAAA 57.155 29.630 3.54 0.00 0.00 2.29
605 648 9.624697 TTTGTAGACTCATTATGCATTGAAAAC 57.375 29.630 3.54 0.56 0.00 2.43
606 649 7.761409 TGTAGACTCATTATGCATTGAAAACC 58.239 34.615 3.54 0.00 0.00 3.27
607 650 5.883661 AGACTCATTATGCATTGAAAACCG 58.116 37.500 3.54 0.00 0.00 4.44
608 651 4.423732 ACTCATTATGCATTGAAAACCGC 58.576 39.130 3.54 0.00 0.00 5.68
609 652 4.158394 ACTCATTATGCATTGAAAACCGCT 59.842 37.500 3.54 0.00 0.00 5.52
610 653 5.356751 ACTCATTATGCATTGAAAACCGCTA 59.643 36.000 3.54 0.00 0.00 4.26
611 654 6.039717 ACTCATTATGCATTGAAAACCGCTAT 59.960 34.615 3.54 0.00 0.00 2.97
612 655 6.207928 TCATTATGCATTGAAAACCGCTATG 58.792 36.000 3.54 0.00 0.00 2.23
613 656 5.574891 TTATGCATTGAAAACCGCTATGT 57.425 34.783 3.54 0.00 0.00 2.29
614 657 3.214697 TGCATTGAAAACCGCTATGTG 57.785 42.857 0.00 0.00 0.00 3.21
615 658 2.816672 TGCATTGAAAACCGCTATGTGA 59.183 40.909 0.00 0.00 0.00 3.58
616 659 3.443329 TGCATTGAAAACCGCTATGTGAT 59.557 39.130 0.00 0.00 0.00 3.06
617 660 3.792956 GCATTGAAAACCGCTATGTGATG 59.207 43.478 0.00 0.00 0.00 3.07
618 661 4.353737 CATTGAAAACCGCTATGTGATGG 58.646 43.478 0.00 0.00 0.00 3.51
619 662 3.066291 TGAAAACCGCTATGTGATGGT 57.934 42.857 0.00 0.00 35.90 3.55
620 663 4.209307 TGAAAACCGCTATGTGATGGTA 57.791 40.909 0.00 0.00 33.45 3.25
621 664 4.580868 TGAAAACCGCTATGTGATGGTAA 58.419 39.130 0.00 0.00 33.45 2.85
622 665 4.393680 TGAAAACCGCTATGTGATGGTAAC 59.606 41.667 0.00 0.00 33.45 2.50
651 694 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
652 695 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
653 696 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
654 697 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
655 698 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
656 699 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
657 700 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
658 701 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
659 702 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
660 703 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
661 704 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
662 705 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
663 706 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
664 707 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
665 708 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
666 709 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
667 710 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
668 711 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
669 712 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
670 713 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
671 714 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
672 715 5.815581 TCCTCATTAACTACTTGCCACATT 58.184 37.500 0.00 0.00 0.00 2.71
673 716 6.953101 TCCTCATTAACTACTTGCCACATTA 58.047 36.000 0.00 0.00 0.00 1.90
674 717 6.821665 TCCTCATTAACTACTTGCCACATTAC 59.178 38.462 0.00 0.00 0.00 1.89
675 718 6.038271 CCTCATTAACTACTTGCCACATTACC 59.962 42.308 0.00 0.00 0.00 2.85
676 719 6.477253 TCATTAACTACTTGCCACATTACCA 58.523 36.000 0.00 0.00 0.00 3.25
677 720 6.943146 TCATTAACTACTTGCCACATTACCAA 59.057 34.615 0.00 0.00 0.00 3.67
678 721 7.613801 TCATTAACTACTTGCCACATTACCAAT 59.386 33.333 0.00 0.00 0.00 3.16
679 722 7.768807 TTAACTACTTGCCACATTACCAATT 57.231 32.000 0.00 0.00 0.00 2.32
680 723 6.664428 AACTACTTGCCACATTACCAATTT 57.336 33.333 0.00 0.00 0.00 1.82
681 724 6.664428 ACTACTTGCCACATTACCAATTTT 57.336 33.333 0.00 0.00 0.00 1.82
682 725 6.454795 ACTACTTGCCACATTACCAATTTTG 58.545 36.000 0.00 0.00 0.00 2.44
683 726 4.064388 ACTTGCCACATTACCAATTTTGC 58.936 39.130 0.00 0.00 0.00 3.68
684 727 4.202346 ACTTGCCACATTACCAATTTTGCT 60.202 37.500 0.00 0.00 0.00 3.91
685 728 4.348863 TGCCACATTACCAATTTTGCTT 57.651 36.364 0.00 0.00 0.00 3.91
686 729 5.474578 TGCCACATTACCAATTTTGCTTA 57.525 34.783 0.00 0.00 0.00 3.09
687 730 6.047511 TGCCACATTACCAATTTTGCTTAT 57.952 33.333 0.00 0.00 0.00 1.73
688 731 5.873712 TGCCACATTACCAATTTTGCTTATG 59.126 36.000 0.00 0.00 0.00 1.90
689 732 5.874261 GCCACATTACCAATTTTGCTTATGT 59.126 36.000 0.00 0.00 0.00 2.29
690 733 6.183360 GCCACATTACCAATTTTGCTTATGTG 60.183 38.462 15.45 15.45 37.72 3.21
691 734 6.313411 CCACATTACCAATTTTGCTTATGTGG 59.687 38.462 21.22 21.22 43.53 4.17
692 735 5.874261 ACATTACCAATTTTGCTTATGTGGC 59.126 36.000 0.00 0.00 0.00 5.01
693 736 5.474578 TTACCAATTTTGCTTATGTGGCA 57.525 34.783 0.00 0.00 37.97 4.92
694 737 4.556592 ACCAATTTTGCTTATGTGGCAT 57.443 36.364 0.00 0.00 39.54 4.40
695 738 4.506758 ACCAATTTTGCTTATGTGGCATC 58.493 39.130 0.00 0.00 39.54 3.91
696 739 4.223477 ACCAATTTTGCTTATGTGGCATCT 59.777 37.500 0.00 0.00 39.54 2.90
697 740 5.421693 ACCAATTTTGCTTATGTGGCATCTA 59.578 36.000 0.00 0.00 39.54 1.98
698 741 6.098695 ACCAATTTTGCTTATGTGGCATCTAT 59.901 34.615 0.00 0.00 39.54 1.98
699 742 6.422701 CCAATTTTGCTTATGTGGCATCTATG 59.577 38.462 0.00 0.00 39.54 2.23
700 743 6.720112 ATTTTGCTTATGTGGCATCTATGT 57.280 33.333 0.00 0.00 39.54 2.29
701 744 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
702 745 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
703 746 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
704 747 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
705 748 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
706 749 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
707 750 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
708 751 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
709 752 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
710 753 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
711 754 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
712 755 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
713 756 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
714 757 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
715 758 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
716 759 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
728 771 9.571816 ACTACCTATGTTACTTCTACTATGACC 57.428 37.037 0.00 0.00 0.00 4.02
729 772 9.570468 CTACCTATGTTACTTCTACTATGACCA 57.430 37.037 0.00 0.00 0.00 4.02
730 773 8.466617 ACCTATGTTACTTCTACTATGACCAG 57.533 38.462 0.00 0.00 0.00 4.00
731 774 7.014422 ACCTATGTTACTTCTACTATGACCAGC 59.986 40.741 0.00 0.00 0.00 4.85
735 778 6.893554 TGTTACTTCTACTATGACCAGCCTTA 59.106 38.462 0.00 0.00 0.00 2.69
864 907 3.632604 CCACACCTATATATCGCGATCCT 59.367 47.826 27.45 16.66 0.00 3.24
895 938 1.153745 CTCAACTTCCCGAGCTCCG 60.154 63.158 8.47 0.80 38.18 4.63
927 970 2.104928 TGTGCTCGCCGCTCATAG 59.895 61.111 0.00 0.00 37.22 2.23
928 971 3.333969 GTGCTCGCCGCTCATAGC 61.334 66.667 0.00 0.00 40.11 2.97
930 973 4.592192 GCTCGCCGCTCATAGCCA 62.592 66.667 0.00 0.00 38.18 4.75
932 975 3.855352 CTCGCCGCTCATAGCCAGG 62.855 68.421 0.00 0.00 38.18 4.45
937 986 1.593750 CGCTCATAGCCAGGCTCAC 60.594 63.158 20.38 2.99 40.44 3.51
948 1014 0.902048 CAGGCTCACTCTCACTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
960 1026 1.616628 ACTCCCACCTCCATCCACC 60.617 63.158 0.00 0.00 0.00 4.61
978 1044 4.463879 CCTCCACGGCAGCTCCTG 62.464 72.222 0.00 0.00 34.12 3.86
1457 1530 2.033372 GGAGTACTTCCTCAGGGCTAC 58.967 57.143 0.00 0.00 43.16 3.58
1495 1568 2.202623 CGAAACTCCTCGAGGCCG 60.203 66.667 27.39 20.96 41.44 6.13
1518 1591 1.287815 CGCCGAGTACAGTGGTGAA 59.712 57.895 5.89 0.00 35.26 3.18
1558 1643 1.856265 CTCGCAAACCTCCACTTGCC 61.856 60.000 1.50 0.00 44.07 4.52
1575 1695 3.756677 CAGCGTCGCACGTGTGAG 61.757 66.667 30.82 23.46 44.73 3.51
1628 1749 4.264253 TGTGAAATATTCTGCAGGTGGAG 58.736 43.478 15.13 0.00 34.56 3.86
1667 1797 1.862123 CTTTGCTGCATGTCGTCGT 59.138 52.632 1.84 0.00 0.00 4.34
1668 1798 0.179240 CTTTGCTGCATGTCGTCGTC 60.179 55.000 1.84 0.00 0.00 4.20
1669 1799 1.885814 TTTGCTGCATGTCGTCGTCG 61.886 55.000 1.84 0.00 38.55 5.12
1670 1800 2.805353 GCTGCATGTCGTCGTCGT 60.805 61.111 1.33 0.00 38.33 4.34
1671 1801 2.778997 GCTGCATGTCGTCGTCGTC 61.779 63.158 1.33 0.00 38.33 4.20
1672 1802 2.488792 CTGCATGTCGTCGTCGTCG 61.489 63.158 5.50 5.50 38.33 5.12
1673 1803 2.501222 GCATGTCGTCGTCGTCGT 60.501 61.111 11.41 0.00 38.33 4.34
1674 1804 2.486322 GCATGTCGTCGTCGTCGTC 61.486 63.158 11.41 6.94 38.33 4.20
1675 1805 2.095282 ATGTCGTCGTCGTCGTCG 59.905 61.111 14.18 14.18 46.06 5.12
1694 1824 2.459904 CGTCAGTTTCGCACGACG 59.540 61.111 13.10 13.10 42.05 5.12
1697 1827 3.411351 CAGTTTCGCACGACGGGG 61.411 66.667 0.00 0.00 43.89 5.73
1862 1992 1.203187 ACCAGGAGTACAGCAGGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
2246 2376 2.358003 GCTGGCTCAAGCTGACGT 60.358 61.111 1.46 0.00 40.20 4.34
2380 2510 0.673644 CCATCAAGAACTTCGCCGGT 60.674 55.000 1.90 0.00 0.00 5.28
2833 3001 5.967674 GTCGCATACAGTACATACTACGTTT 59.032 40.000 0.00 0.00 34.13 3.60
2930 3098 4.849111 CGAGAGCAAAACAGAGATAACC 57.151 45.455 0.00 0.00 0.00 2.85
3080 3248 5.766174 AGAACGATAAAAGGCACCAAAAGTA 59.234 36.000 0.00 0.00 0.00 2.24
3081 3249 6.433093 AGAACGATAAAAGGCACCAAAAGTAT 59.567 34.615 0.00 0.00 0.00 2.12
3162 3330 5.703130 AGCCAGAAGACAAAGACATAACTTC 59.297 40.000 0.00 0.00 35.47 3.01
3187 3356 5.102313 GCACAAAGAGCACAGTTTACTTTT 58.898 37.500 0.00 0.00 0.00 2.27
3379 3548 2.275134 TGACTTTTGCAGCATCCTGA 57.725 45.000 0.00 0.00 41.77 3.86
3392 3561 5.448360 GCAGCATCCTGAGAACAGATTTTAC 60.448 44.000 0.00 0.00 46.03 2.01
3448 3617 4.750941 AGGGAATCAACCAAATCCAGAAA 58.249 39.130 0.00 0.00 33.48 2.52
3454 3623 9.500785 GGAATCAACCAAATCCAGAAATTAAAA 57.499 29.630 0.00 0.00 32.08 1.52
3458 3627 9.974980 TCAACCAAATCCAGAAATTAAAACTAC 57.025 29.630 0.00 0.00 0.00 2.73
3459 3628 9.981114 CAACCAAATCCAGAAATTAAAACTACT 57.019 29.630 0.00 0.00 0.00 2.57
3503 3672 6.409524 AAGATGAGGAAATGTTTGCTGAAA 57.590 33.333 4.18 0.00 39.04 2.69
3510 3679 4.875536 GGAAATGTTTGCTGAAAACCAAGT 59.124 37.500 8.73 0.00 46.47 3.16
3518 3687 6.463995 TTGCTGAAAACCAAGTTCAATACT 57.536 33.333 0.00 0.00 39.32 2.12
3554 3723 7.568199 ACTAATTTAGGATGTACCAATGTGC 57.432 36.000 8.26 0.00 42.04 4.57
3558 3727 3.939740 AGGATGTACCAATGTGCAGAT 57.060 42.857 0.00 0.00 40.54 2.90
3623 3792 8.998377 ACAAACTTTTTGATAAAACAAACTGCT 58.002 25.926 5.67 0.00 39.08 4.24
3646 3815 7.145323 GCTAACAGGACAATAGAAAAAGCAAA 58.855 34.615 0.00 0.00 0.00 3.68
3647 3816 7.114953 GCTAACAGGACAATAGAAAAAGCAAAC 59.885 37.037 0.00 0.00 0.00 2.93
3648 3817 5.842907 ACAGGACAATAGAAAAAGCAAACC 58.157 37.500 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.130561 GCTGCCCTGATCGTGTTTTAC 59.869 52.381 0.00 0.00 0.00 2.01
11 12 1.448985 GCTGCCCTGATCGTGTTTTA 58.551 50.000 0.00 0.00 0.00 1.52
12 13 1.244019 GGCTGCCCTGATCGTGTTTT 61.244 55.000 7.66 0.00 0.00 2.43
13 14 1.675641 GGCTGCCCTGATCGTGTTT 60.676 57.895 7.66 0.00 0.00 2.83
14 15 2.045926 GGCTGCCCTGATCGTGTT 60.046 61.111 7.66 0.00 0.00 3.32
15 16 4.457496 CGGCTGCCCTGATCGTGT 62.457 66.667 14.12 0.00 0.00 4.49
19 20 3.543536 GATCCCGGCTGCCCTGATC 62.544 68.421 21.95 21.95 33.06 2.92
20 21 3.564218 GATCCCGGCTGCCCTGAT 61.564 66.667 14.12 14.76 0.00 2.90
24 25 3.738745 AATTGGATCCCGGCTGCCC 62.739 63.158 14.12 0.00 0.00 5.36
25 26 2.123726 AATTGGATCCCGGCTGCC 60.124 61.111 9.90 9.11 0.00 4.85
26 27 0.465460 TACAATTGGATCCCGGCTGC 60.465 55.000 9.90 0.00 0.00 5.25
27 28 1.881973 CATACAATTGGATCCCGGCTG 59.118 52.381 9.90 4.03 0.00 4.85
28 29 1.819305 GCATACAATTGGATCCCGGCT 60.819 52.381 9.90 0.00 0.00 5.52
29 30 0.598065 GCATACAATTGGATCCCGGC 59.402 55.000 9.90 2.58 0.00 6.13
30 31 0.874390 CGCATACAATTGGATCCCGG 59.126 55.000 9.90 0.00 0.00 5.73
31 32 0.874390 CCGCATACAATTGGATCCCG 59.126 55.000 9.90 11.24 0.00 5.14
32 33 1.247567 CCCGCATACAATTGGATCCC 58.752 55.000 9.90 0.00 0.00 3.85
33 34 1.981256 ACCCGCATACAATTGGATCC 58.019 50.000 10.83 4.20 0.00 3.36
34 35 5.581085 GTCTATACCCGCATACAATTGGATC 59.419 44.000 10.83 0.55 0.00 3.36
35 36 5.248477 AGTCTATACCCGCATACAATTGGAT 59.752 40.000 10.83 3.28 0.00 3.41
36 37 4.591498 AGTCTATACCCGCATACAATTGGA 59.409 41.667 10.83 0.10 0.00 3.53
37 38 4.894784 AGTCTATACCCGCATACAATTGG 58.105 43.478 10.83 0.00 0.00 3.16
38 39 5.538118 TGAGTCTATACCCGCATACAATTG 58.462 41.667 3.24 3.24 0.00 2.32
39 40 5.801531 TGAGTCTATACCCGCATACAATT 57.198 39.130 0.00 0.00 0.00 2.32
40 41 5.801531 TTGAGTCTATACCCGCATACAAT 57.198 39.130 0.00 0.00 0.00 2.71
41 42 5.452776 CCTTTGAGTCTATACCCGCATACAA 60.453 44.000 0.00 0.00 0.00 2.41
42 43 4.038763 CCTTTGAGTCTATACCCGCATACA 59.961 45.833 0.00 0.00 0.00 2.29
43 44 4.557205 CCTTTGAGTCTATACCCGCATAC 58.443 47.826 0.00 0.00 0.00 2.39
44 45 3.006537 GCCTTTGAGTCTATACCCGCATA 59.993 47.826 0.00 0.00 0.00 3.14
45 46 2.224305 GCCTTTGAGTCTATACCCGCAT 60.224 50.000 0.00 0.00 0.00 4.73
46 47 1.138266 GCCTTTGAGTCTATACCCGCA 59.862 52.381 0.00 0.00 0.00 5.69
47 48 1.867166 GCCTTTGAGTCTATACCCGC 58.133 55.000 0.00 0.00 0.00 6.13
48 49 1.679680 TCGCCTTTGAGTCTATACCCG 59.320 52.381 0.00 0.00 0.00 5.28
49 50 2.429610 TGTCGCCTTTGAGTCTATACCC 59.570 50.000 0.00 0.00 0.00 3.69
50 51 3.795623 TGTCGCCTTTGAGTCTATACC 57.204 47.619 0.00 0.00 0.00 2.73
51 52 4.995124 TCTTGTCGCCTTTGAGTCTATAC 58.005 43.478 0.00 0.00 0.00 1.47
52 53 5.654603 TTCTTGTCGCCTTTGAGTCTATA 57.345 39.130 0.00 0.00 0.00 1.31
53 54 4.537135 TTCTTGTCGCCTTTGAGTCTAT 57.463 40.909 0.00 0.00 0.00 1.98
54 55 4.330944 TTTCTTGTCGCCTTTGAGTCTA 57.669 40.909 0.00 0.00 0.00 2.59
55 56 2.910688 TTCTTGTCGCCTTTGAGTCT 57.089 45.000 0.00 0.00 0.00 3.24
56 57 3.423645 CGATTTCTTGTCGCCTTTGAGTC 60.424 47.826 0.00 0.00 31.85 3.36
57 58 2.480419 CGATTTCTTGTCGCCTTTGAGT 59.520 45.455 0.00 0.00 31.85 3.41
58 59 3.109230 CGATTTCTTGTCGCCTTTGAG 57.891 47.619 0.00 0.00 31.85 3.02
66 67 2.464865 CTCCTAGGCGATTTCTTGTCG 58.535 52.381 2.96 0.00 41.77 4.35
67 68 2.431057 TCCTCCTAGGCGATTTCTTGTC 59.569 50.000 2.96 0.00 34.61 3.18
68 69 2.432510 CTCCTCCTAGGCGATTTCTTGT 59.567 50.000 2.96 0.00 34.61 3.16
69 70 2.224161 CCTCCTCCTAGGCGATTTCTTG 60.224 54.545 2.96 0.00 34.61 3.02
70 71 2.043227 CCTCCTCCTAGGCGATTTCTT 58.957 52.381 2.96 0.00 34.61 2.52
71 72 1.218196 TCCTCCTCCTAGGCGATTTCT 59.782 52.381 2.96 0.00 36.51 2.52
72 73 1.705873 TCCTCCTCCTAGGCGATTTC 58.294 55.000 2.96 0.00 36.51 2.17
73 74 2.176247 TTCCTCCTCCTAGGCGATTT 57.824 50.000 2.96 0.00 36.51 2.17
74 75 2.170817 GTTTTCCTCCTCCTAGGCGATT 59.829 50.000 2.96 0.00 36.51 3.34
75 76 1.763545 GTTTTCCTCCTCCTAGGCGAT 59.236 52.381 2.96 0.00 36.51 4.58
76 77 1.192428 GTTTTCCTCCTCCTAGGCGA 58.808 55.000 2.96 0.69 36.51 5.54
77 78 0.178301 GGTTTTCCTCCTCCTAGGCG 59.822 60.000 2.96 0.00 36.51 5.52
78 79 0.547075 GGGTTTTCCTCCTCCTAGGC 59.453 60.000 2.96 0.00 40.46 3.93
79 80 2.272074 AGGGTTTTCCTCCTCCTAGG 57.728 55.000 0.82 0.82 44.06 3.02
80 81 3.962063 GTCTAGGGTTTTCCTCCTCCTAG 59.038 52.174 8.06 8.06 44.06 3.02
81 82 3.310435 GGTCTAGGGTTTTCCTCCTCCTA 60.310 52.174 0.00 0.00 44.06 2.94
82 83 2.562443 GGTCTAGGGTTTTCCTCCTCCT 60.562 54.545 0.00 0.00 44.06 3.69
83 84 1.838715 GGTCTAGGGTTTTCCTCCTCC 59.161 57.143 0.00 0.00 44.06 4.30
84 85 1.481363 CGGTCTAGGGTTTTCCTCCTC 59.519 57.143 0.00 0.00 44.06 3.71
85 86 1.078324 TCGGTCTAGGGTTTTCCTCCT 59.922 52.381 0.00 0.00 44.06 3.69
86 87 1.565067 TCGGTCTAGGGTTTTCCTCC 58.435 55.000 0.00 0.00 44.06 4.30
87 88 2.093606 CCTTCGGTCTAGGGTTTTCCTC 60.094 54.545 0.00 0.00 44.06 3.71
89 90 1.678123 GCCTTCGGTCTAGGGTTTTCC 60.678 57.143 0.00 0.00 39.75 3.13
90 91 1.678123 GGCCTTCGGTCTAGGGTTTTC 60.678 57.143 0.00 0.00 33.19 2.29
91 92 0.327259 GGCCTTCGGTCTAGGGTTTT 59.673 55.000 0.00 0.00 33.19 2.43
92 93 0.546988 AGGCCTTCGGTCTAGGGTTT 60.547 55.000 0.00 0.00 34.99 3.27
93 94 0.337428 TAGGCCTTCGGTCTAGGGTT 59.663 55.000 12.58 0.00 39.09 4.11
94 95 2.013405 TAGGCCTTCGGTCTAGGGT 58.987 57.895 12.58 0.00 39.09 4.34
98 99 1.232216 CCCCTAGGCCTTCGGTCTA 59.768 63.158 12.58 0.00 39.09 2.59
99 100 2.041819 CCCCTAGGCCTTCGGTCT 60.042 66.667 12.58 0.00 42.13 3.85
100 101 2.042230 TCCCCTAGGCCTTCGGTC 60.042 66.667 12.58 0.00 0.00 4.79
101 102 2.041819 CTCCCCTAGGCCTTCGGT 60.042 66.667 12.58 0.00 0.00 4.69
102 103 2.844839 CCTCCCCTAGGCCTTCGG 60.845 72.222 12.58 12.63 38.97 4.30
110 111 8.846423 ATAGATACAATCAATACCTCCCCTAG 57.154 38.462 0.00 0.00 0.00 3.02
111 112 8.633724 AGATAGATACAATCAATACCTCCCCTA 58.366 37.037 0.00 0.00 0.00 3.53
112 113 7.491681 AGATAGATACAATCAATACCTCCCCT 58.508 38.462 0.00 0.00 0.00 4.79
113 114 7.741554 AGATAGATACAATCAATACCTCCCC 57.258 40.000 0.00 0.00 0.00 4.81
140 141 8.838961 GCGCTTTACGTAACTTTAGATAGATAG 58.161 37.037 7.70 0.00 46.11 2.08
141 142 7.531871 CGCGCTTTACGTAACTTTAGATAGATA 59.468 37.037 7.70 0.00 46.11 1.98
145 146 4.204978 GCGCGCTTTACGTAACTTTAGATA 59.795 41.667 26.67 0.00 46.11 1.98
201 202 2.430382 TTCAGTGTCGGTTCGGGAGC 62.430 60.000 0.00 0.00 0.00 4.70
246 248 4.799678 AGTATATGCAGACACGCACTATC 58.200 43.478 0.00 0.00 46.56 2.08
265 267 1.617263 GGAGAGCAGGGTGAGTGAGTA 60.617 57.143 0.00 0.00 0.00 2.59
274 276 2.348998 CGCTTTGGAGAGCAGGGT 59.651 61.111 0.00 0.00 42.83 4.34
275 277 3.130160 GCGCTTTGGAGAGCAGGG 61.130 66.667 0.00 0.00 46.48 4.45
314 316 1.370900 CGCGGCCACGTACTATACC 60.371 63.158 4.63 0.00 43.45 2.73
316 318 1.944035 CTCGCGGCCACGTACTATA 59.056 57.895 13.74 0.00 43.45 1.31
317 319 2.719979 CTCGCGGCCACGTACTAT 59.280 61.111 13.74 0.00 43.45 2.12
318 320 4.183686 GCTCGCGGCCACGTACTA 62.184 66.667 13.74 0.00 43.45 1.82
369 406 0.179225 CGTTTCGCTTGTTCGGATGG 60.179 55.000 0.00 0.00 0.00 3.51
433 470 1.228862 GAAAGGCAAAGCTGGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
435 472 2.964978 CGAAAGGCAAAGCTGGGG 59.035 61.111 0.00 0.00 0.00 4.96
461 504 1.007721 ACTCTCCACTATGACCAGCCT 59.992 52.381 0.00 0.00 0.00 4.58
462 505 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
467 510 7.627298 TGTCTAAGTTACTCTCCACTATGAC 57.373 40.000 0.00 0.00 0.00 3.06
468 511 7.889073 ACTTGTCTAAGTTACTCTCCACTATGA 59.111 37.037 0.00 0.00 44.57 2.15
469 512 8.057536 ACTTGTCTAAGTTACTCTCCACTATG 57.942 38.462 0.00 0.00 44.57 2.23
470 513 9.750783 TTACTTGTCTAAGTTACTCTCCACTAT 57.249 33.333 0.00 0.00 44.57 2.12
471 514 9.007901 GTTACTTGTCTAAGTTACTCTCCACTA 57.992 37.037 0.00 0.00 44.57 2.74
472 515 7.504911 TGTTACTTGTCTAAGTTACTCTCCACT 59.495 37.037 9.71 0.00 44.57 4.00
473 516 7.655490 TGTTACTTGTCTAAGTTACTCTCCAC 58.345 38.462 9.71 0.00 44.57 4.02
474 517 7.828508 TGTTACTTGTCTAAGTTACTCTCCA 57.171 36.000 9.71 0.00 44.57 3.86
500 543 9.917887 AGGTAGTAACATAGACTAGTAACACAT 57.082 33.333 0.00 0.00 30.08 3.21
501 544 9.745018 AAGGTAGTAACATAGACTAGTAACACA 57.255 33.333 0.00 0.00 30.08 3.72
503 546 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
509 552 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
510 553 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
511 554 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
512 555 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
513 556 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
514 557 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
515 558 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
522 565 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
523 566 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
524 567 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
525 568 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
526 569 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
527 570 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
528 571 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
529 572 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
530 573 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
531 574 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
532 575 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
533 576 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
534 577 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
535 578 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
536 579 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
537 580 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
538 581 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
539 582 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
540 583 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
541 584 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
542 585 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
543 586 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
544 587 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
545 588 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
546 589 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
561 604 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
562 605 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
563 606 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
564 607 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
575 618 9.665719 TCAATGCATAATGAGTCTACAAAGTAA 57.334 29.630 0.00 0.00 0.00 2.24
576 619 9.665719 TTCAATGCATAATGAGTCTACAAAGTA 57.334 29.630 0.00 0.00 0.00 2.24
577 620 8.565896 TTCAATGCATAATGAGTCTACAAAGT 57.434 30.769 0.00 0.00 0.00 2.66
578 621 9.844790 TTTTCAATGCATAATGAGTCTACAAAG 57.155 29.630 0.00 0.00 0.00 2.77
579 622 9.624697 GTTTTCAATGCATAATGAGTCTACAAA 57.375 29.630 0.00 0.00 0.00 2.83
580 623 8.243426 GGTTTTCAATGCATAATGAGTCTACAA 58.757 33.333 0.00 0.00 0.00 2.41
581 624 7.413988 CGGTTTTCAATGCATAATGAGTCTACA 60.414 37.037 0.00 0.00 0.00 2.74
582 625 6.907212 CGGTTTTCAATGCATAATGAGTCTAC 59.093 38.462 0.00 0.00 0.00 2.59
583 626 6.458206 GCGGTTTTCAATGCATAATGAGTCTA 60.458 38.462 0.00 0.00 0.00 2.59
584 627 5.677091 GCGGTTTTCAATGCATAATGAGTCT 60.677 40.000 0.00 0.00 0.00 3.24
585 628 4.500477 GCGGTTTTCAATGCATAATGAGTC 59.500 41.667 0.00 0.00 0.00 3.36
586 629 4.158394 AGCGGTTTTCAATGCATAATGAGT 59.842 37.500 0.00 0.00 0.00 3.41
587 630 4.675510 AGCGGTTTTCAATGCATAATGAG 58.324 39.130 0.00 0.00 0.00 2.90
588 631 4.717233 AGCGGTTTTCAATGCATAATGA 57.283 36.364 0.00 0.00 0.00 2.57
589 632 5.978919 ACATAGCGGTTTTCAATGCATAATG 59.021 36.000 0.00 0.00 0.00 1.90
590 633 5.978919 CACATAGCGGTTTTCAATGCATAAT 59.021 36.000 0.00 0.00 0.00 1.28
591 634 5.124617 TCACATAGCGGTTTTCAATGCATAA 59.875 36.000 0.00 0.00 0.00 1.90
592 635 4.637977 TCACATAGCGGTTTTCAATGCATA 59.362 37.500 0.00 0.00 0.00 3.14
593 636 3.443329 TCACATAGCGGTTTTCAATGCAT 59.557 39.130 0.00 0.00 0.00 3.96
594 637 2.816672 TCACATAGCGGTTTTCAATGCA 59.183 40.909 0.00 0.00 0.00 3.96
595 638 3.485947 TCACATAGCGGTTTTCAATGC 57.514 42.857 0.00 0.00 0.00 3.56
596 639 4.142403 ACCATCACATAGCGGTTTTCAATG 60.142 41.667 0.00 0.00 0.00 2.82
597 640 4.016444 ACCATCACATAGCGGTTTTCAAT 58.984 39.130 0.00 0.00 0.00 2.57
598 641 3.417101 ACCATCACATAGCGGTTTTCAA 58.583 40.909 0.00 0.00 0.00 2.69
599 642 3.066291 ACCATCACATAGCGGTTTTCA 57.934 42.857 0.00 0.00 0.00 2.69
600 643 4.393680 TGTTACCATCACATAGCGGTTTTC 59.606 41.667 0.00 0.00 32.81 2.29
601 644 4.328536 TGTTACCATCACATAGCGGTTTT 58.671 39.130 0.00 0.00 32.81 2.43
602 645 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
603 646 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
604 647 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
605 648 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
606 649 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
625 668 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
626 669 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
627 670 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
628 671 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
629 672 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
630 673 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
631 674 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
632 675 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
633 676 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
634 677 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
635 678 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
636 679 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
637 680 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
638 681 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
639 682 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
640 683 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
641 684 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
642 685 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
643 686 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
644 687 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
645 688 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
646 689 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
647 690 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
648 691 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
649 692 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
650 693 6.038271 GGTAATGTGGCAAGTAGTTAATGAGG 59.962 42.308 0.00 0.00 0.00 3.86
651 694 6.597672 TGGTAATGTGGCAAGTAGTTAATGAG 59.402 38.462 0.00 0.00 0.00 2.90
652 695 6.477253 TGGTAATGTGGCAAGTAGTTAATGA 58.523 36.000 0.00 0.00 0.00 2.57
653 696 6.751514 TGGTAATGTGGCAAGTAGTTAATG 57.248 37.500 0.00 0.00 0.00 1.90
654 697 7.954666 ATTGGTAATGTGGCAAGTAGTTAAT 57.045 32.000 0.00 0.00 0.00 1.40
655 698 7.768807 AATTGGTAATGTGGCAAGTAGTTAA 57.231 32.000 0.00 0.00 0.00 2.01
656 699 7.768807 AAATTGGTAATGTGGCAAGTAGTTA 57.231 32.000 0.00 0.00 0.00 2.24
657 700 6.664428 AAATTGGTAATGTGGCAAGTAGTT 57.336 33.333 0.00 0.00 0.00 2.24
658 701 6.454795 CAAAATTGGTAATGTGGCAAGTAGT 58.545 36.000 0.00 0.00 0.00 2.73
659 702 5.348451 GCAAAATTGGTAATGTGGCAAGTAG 59.652 40.000 0.00 0.00 0.00 2.57
660 703 5.011533 AGCAAAATTGGTAATGTGGCAAGTA 59.988 36.000 0.00 0.00 37.09 2.24
661 704 4.064388 GCAAAATTGGTAATGTGGCAAGT 58.936 39.130 0.00 0.00 0.00 3.16
662 705 4.317488 AGCAAAATTGGTAATGTGGCAAG 58.683 39.130 0.00 0.00 37.09 4.01
663 706 4.348863 AGCAAAATTGGTAATGTGGCAA 57.651 36.364 0.00 0.00 37.09 4.52
664 707 4.348863 AAGCAAAATTGGTAATGTGGCA 57.651 36.364 0.00 0.00 38.04 4.92
665 708 5.874261 ACATAAGCAAAATTGGTAATGTGGC 59.126 36.000 0.00 0.00 38.04 5.01
666 709 6.313411 CCACATAAGCAAAATTGGTAATGTGG 59.687 38.462 14.63 14.63 45.85 4.17
667 710 6.183360 GCCACATAAGCAAAATTGGTAATGTG 60.183 38.462 0.00 0.00 38.04 3.21
668 711 5.874261 GCCACATAAGCAAAATTGGTAATGT 59.126 36.000 0.00 0.00 38.04 2.71
669 712 5.873712 TGCCACATAAGCAAAATTGGTAATG 59.126 36.000 0.00 0.00 38.04 1.90
670 713 6.047511 TGCCACATAAGCAAAATTGGTAAT 57.952 33.333 0.00 0.00 38.04 1.89
671 714 5.474578 TGCCACATAAGCAAAATTGGTAA 57.525 34.783 0.00 0.00 38.04 2.85
672 715 5.421693 AGATGCCACATAAGCAAAATTGGTA 59.578 36.000 0.00 0.00 44.83 3.25
673 716 4.223477 AGATGCCACATAAGCAAAATTGGT 59.777 37.500 0.00 0.00 44.83 3.67
674 717 4.761975 AGATGCCACATAAGCAAAATTGG 58.238 39.130 0.00 0.00 44.83 3.16
675 718 6.982141 ACATAGATGCCACATAAGCAAAATTG 59.018 34.615 0.00 0.00 44.83 2.32
676 719 7.116075 ACATAGATGCCACATAAGCAAAATT 57.884 32.000 0.00 0.00 44.83 1.82
677 720 6.720112 ACATAGATGCCACATAAGCAAAAT 57.280 33.333 0.00 0.00 44.83 1.82
678 721 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
679 722 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
680 723 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
681 724 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
682 725 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
683 726 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
684 727 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
685 728 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
686 729 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
687 730 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
688 731 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
689 732 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
690 733 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
702 745 9.571816 GGTCATAGTAGAAGTAACATAGGTAGT 57.428 37.037 0.00 0.00 0.00 2.73
703 746 9.570468 TGGTCATAGTAGAAGTAACATAGGTAG 57.430 37.037 0.00 0.00 0.00 3.18
704 747 9.570468 CTGGTCATAGTAGAAGTAACATAGGTA 57.430 37.037 0.00 0.00 0.00 3.08
705 748 7.014422 GCTGGTCATAGTAGAAGTAACATAGGT 59.986 40.741 0.00 0.00 0.00 3.08
706 749 7.371936 GCTGGTCATAGTAGAAGTAACATAGG 58.628 42.308 0.00 0.00 0.00 2.57
707 750 7.231722 AGGCTGGTCATAGTAGAAGTAACATAG 59.768 40.741 0.00 0.00 0.00 2.23
708 751 7.067421 AGGCTGGTCATAGTAGAAGTAACATA 58.933 38.462 0.00 0.00 0.00 2.29
709 752 5.900123 AGGCTGGTCATAGTAGAAGTAACAT 59.100 40.000 0.00 0.00 0.00 2.71
710 753 5.269991 AGGCTGGTCATAGTAGAAGTAACA 58.730 41.667 0.00 0.00 0.00 2.41
711 754 5.855740 AGGCTGGTCATAGTAGAAGTAAC 57.144 43.478 0.00 0.00 0.00 2.50
712 755 7.471539 GCATAAGGCTGGTCATAGTAGAAGTAA 60.472 40.741 0.00 0.00 40.25 2.24
713 756 6.015350 GCATAAGGCTGGTCATAGTAGAAGTA 60.015 42.308 0.00 0.00 40.25 2.24
714 757 5.221541 GCATAAGGCTGGTCATAGTAGAAGT 60.222 44.000 0.00 0.00 40.25 3.01
715 758 5.233988 GCATAAGGCTGGTCATAGTAGAAG 58.766 45.833 0.00 0.00 40.25 2.85
716 759 5.215252 GCATAAGGCTGGTCATAGTAGAA 57.785 43.478 0.00 0.00 40.25 2.10
717 760 4.873746 GCATAAGGCTGGTCATAGTAGA 57.126 45.455 0.00 0.00 40.25 2.59
730 773 2.680312 TCAGTCAGTCAGCATAAGGC 57.320 50.000 0.00 0.00 45.30 4.35
731 774 3.181482 ACGATCAGTCAGTCAGCATAAGG 60.181 47.826 0.00 0.00 0.00 2.69
735 778 2.232208 TGAACGATCAGTCAGTCAGCAT 59.768 45.455 0.00 0.00 0.00 3.79
787 830 2.471370 CGTGATTGATTATCGGTCGGTG 59.529 50.000 0.00 0.00 35.94 4.94
864 907 5.623824 CGGGAAGTTGAGCTAAGCTAAGTAA 60.624 44.000 0.00 0.00 39.88 2.24
893 936 1.153489 CACACTGGAGAGGATGCGG 60.153 63.158 0.00 0.00 0.00 5.69
895 938 1.023513 GCACACACTGGAGAGGATGC 61.024 60.000 0.00 0.00 0.00 3.91
927 970 1.217779 GAGTGAGAGTGAGCCTGGC 59.782 63.158 11.65 11.65 0.00 4.85
928 971 1.612395 GGGAGTGAGAGTGAGCCTGG 61.612 65.000 0.00 0.00 0.00 4.45
930 973 0.902516 GTGGGAGTGAGAGTGAGCCT 60.903 60.000 0.00 0.00 0.00 4.58
932 975 0.902516 AGGTGGGAGTGAGAGTGAGC 60.903 60.000 0.00 0.00 0.00 4.26
937 986 1.118838 GATGGAGGTGGGAGTGAGAG 58.881 60.000 0.00 0.00 0.00 3.20
948 1014 2.042930 GGAGGGGTGGATGGAGGT 59.957 66.667 0.00 0.00 0.00 3.85
1495 1568 2.048503 ACTGTACTCGGCGTTGCC 60.049 61.111 6.85 0.00 46.75 4.52
1518 1591 3.644606 CTCAGGCAGCAGGGTGGT 61.645 66.667 0.00 0.00 0.00 4.16
1575 1695 5.927030 TGTTAAATGTCAGCTTCGAATGTC 58.073 37.500 0.00 0.00 0.00 3.06
1628 1749 2.177778 GCCAAAGAAGCTGCTCGC 59.822 61.111 1.00 0.00 39.57 5.03
1672 1802 3.033764 TGCGAAACTGACGGCGAC 61.034 61.111 16.62 8.59 0.00 5.19
1673 1803 3.033764 GTGCGAAACTGACGGCGA 61.034 61.111 16.62 0.00 0.00 5.54
1674 1804 4.409588 CGTGCGAAACTGACGGCG 62.410 66.667 4.80 4.80 0.00 6.46
1675 1805 3.033764 TCGTGCGAAACTGACGGC 61.034 61.111 0.00 0.00 33.88 5.68
1697 1827 3.838795 GTCGTGCATGCCGTCGAC 61.839 66.667 29.25 29.25 43.81 4.20
1703 1833 3.272334 GATCCGGTCGTGCATGCC 61.272 66.667 16.68 5.63 0.00 4.40
1738 1868 1.502190 CATGAGCTGCTGCAGTGTG 59.498 57.895 28.50 17.99 42.74 3.82
1808 1938 2.668280 GCTTCTTGTCGTGGCGGAC 61.668 63.158 1.92 1.92 37.45 4.79
1812 1942 2.970974 GCCAGCTTCTTGTCGTGGC 61.971 63.158 0.00 0.00 46.49 5.01
1813 1943 2.671177 CGCCAGCTTCTTGTCGTGG 61.671 63.158 0.00 0.00 0.00 4.94
1862 1992 2.936993 GCTTCTGGATGTCCACGTTGAT 60.937 50.000 0.00 0.00 42.01 2.57
2060 2190 2.202974 CTGCTGCGCTATCAGGCA 60.203 61.111 9.73 8.57 37.63 4.75
2546 2676 2.821366 GTGCTCCATCCAGTGCCG 60.821 66.667 0.00 0.00 0.00 5.69
2800 2930 1.191944 CTGTATGCGACTACTGCACG 58.808 55.000 0.00 0.00 46.57 5.34
2833 3001 9.010029 GTGTAGAAAGGAAATATCTCCAAAACA 57.990 33.333 0.00 0.00 38.02 2.83
2930 3098 5.904080 GTCATGAAAAAGAAGTCACAACTCG 59.096 40.000 0.00 0.00 33.48 4.18
3080 3248 9.851686 TGCTGGATTGAAAAATGTCTACTATAT 57.148 29.630 0.00 0.00 0.00 0.86
3081 3249 9.679661 TTGCTGGATTGAAAAATGTCTACTATA 57.320 29.630 0.00 0.00 0.00 1.31
3088 3256 9.076596 GTATTAGTTGCTGGATTGAAAAATGTC 57.923 33.333 0.00 0.00 0.00 3.06
3162 3330 2.857592 AAACTGTGCTCTTTGTGCAG 57.142 45.000 0.00 0.00 41.41 4.41
3187 3356 4.578928 GGAAAAACAGAGACTTGTTGCCTA 59.421 41.667 4.48 0.00 40.24 3.93
3411 3580 9.847224 GGTTGATTCCCTCTATATTTGAACTTA 57.153 33.333 0.00 0.00 0.00 2.24
3415 3584 9.713684 ATTTGGTTGATTCCCTCTATATTTGAA 57.286 29.630 0.00 0.00 0.00 2.69
3416 3585 9.354673 GATTTGGTTGATTCCCTCTATATTTGA 57.645 33.333 0.00 0.00 0.00 2.69
3417 3586 8.579863 GGATTTGGTTGATTCCCTCTATATTTG 58.420 37.037 0.00 0.00 0.00 2.32
3454 3623 7.603180 TCTGATGCCTTCATTGTATAGTAGT 57.397 36.000 0.00 0.00 32.72 2.73
3456 3625 9.330063 CTTTTCTGATGCCTTCATTGTATAGTA 57.670 33.333 0.00 0.00 32.72 1.82
3457 3626 8.049117 TCTTTTCTGATGCCTTCATTGTATAGT 58.951 33.333 0.00 0.00 32.72 2.12
3458 3627 8.442632 TCTTTTCTGATGCCTTCATTGTATAG 57.557 34.615 0.00 0.00 32.72 1.31
3459 3628 8.843262 CATCTTTTCTGATGCCTTCATTGTATA 58.157 33.333 0.00 0.00 37.59 1.47
3460 3629 7.558807 TCATCTTTTCTGATGCCTTCATTGTAT 59.441 33.333 0.00 0.00 42.44 2.29
3503 3672 7.944729 AATATGCTCAGTATTGAACTTGGTT 57.055 32.000 0.00 0.00 35.76 3.67
3505 3674 9.722056 GTAAAATATGCTCAGTATTGAACTTGG 57.278 33.333 0.00 0.00 35.76 3.61
3585 3754 8.831715 ATCAAAAAGTTTGTCACTGTTTTCTT 57.168 26.923 0.98 0.00 39.63 2.52
3601 3770 9.646427 TGTTAGCAGTTTGTTTTATCAAAAAGT 57.354 25.926 0.00 0.00 38.71 2.66
3620 3789 5.767665 TGCTTTTTCTATTGTCCTGTTAGCA 59.232 36.000 0.00 0.00 0.00 3.49
3623 3792 7.068839 TGGTTTGCTTTTTCTATTGTCCTGTTA 59.931 33.333 0.00 0.00 0.00 2.41
3646 3815 8.137437 CAGATTTTTAGCATTTCCGATATTGGT 58.863 33.333 8.94 0.00 0.00 3.67
3647 3816 8.352201 TCAGATTTTTAGCATTTCCGATATTGG 58.648 33.333 2.04 2.04 0.00 3.16
3648 3817 9.734620 TTCAGATTTTTAGCATTTCCGATATTG 57.265 29.630 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.