Multiple sequence alignment - TraesCS6A01G243000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G243000 chr6A 100.000 6221 0 0 1 6221 454674310 454680530 0.000000e+00 11489.0
1 TraesCS6A01G243000 chr6A 92.523 428 22 2 1 419 105584377 105584803 6.900000e-169 604.0
2 TraesCS6A01G243000 chr6D 96.735 2879 48 14 1031 3877 317076139 317079003 0.000000e+00 4754.0
3 TraesCS6A01G243000 chr6D 97.018 1643 40 6 3880 5520 317079152 317080787 0.000000e+00 2754.0
4 TraesCS6A01G243000 chr6D 98.009 703 14 0 5519 6221 317080824 317081526 0.000000e+00 1221.0
5 TraesCS6A01G243000 chr6D 90.476 126 7 4 3654 3776 391925993 391925870 1.790000e-35 161.0
6 TraesCS6A01G243000 chr6B 95.307 2344 84 14 3880 6221 507471289 507468970 0.000000e+00 3696.0
7 TraesCS6A01G243000 chr6B 97.777 1754 30 2 2124 3877 507473182 507471438 0.000000e+00 3014.0
8 TraesCS6A01G243000 chr6B 92.547 1127 46 18 1051 2147 507477606 507476488 0.000000e+00 1581.0
9 TraesCS6A01G243000 chr6B 88.993 427 38 1 2 419 6484196 6483770 2.570000e-143 520.0
10 TraesCS6A01G243000 chr5B 97.935 581 11 1 450 1030 548455535 548456114 0.000000e+00 1005.0
11 TraesCS6A01G243000 chr2A 97.935 581 10 2 453 1033 109594035 109593457 0.000000e+00 1005.0
12 TraesCS6A01G243000 chr2A 97.432 584 14 1 450 1033 105413765 105413183 0.000000e+00 994.0
13 TraesCS6A01G243000 chr2A 91.453 117 10 0 3650 3766 205917590 205917706 1.790000e-35 161.0
14 TraesCS6A01G243000 chr2A 87.324 71 8 1 1175 1245 642911854 642911923 5.170000e-11 80.5
15 TraesCS6A01G243000 chr1B 97.418 581 14 1 453 1033 186456736 186457315 0.000000e+00 989.0
16 TraesCS6A01G243000 chr1B 87.559 426 43 6 2 418 451605533 451605957 9.380000e-133 484.0
17 TraesCS6A01G243000 chr7A 96.429 588 20 1 446 1033 252455947 252455361 0.000000e+00 968.0
18 TraesCS6A01G243000 chr7A 91.589 428 26 2 1 419 58337129 58336703 3.230000e-162 582.0
19 TraesCS6A01G243000 chr7A 91.121 428 28 2 1 419 40853089 40852663 7.000000e-159 571.0
20 TraesCS6A01G243000 chr3A 96.575 584 18 2 452 1034 709913926 709913344 0.000000e+00 966.0
21 TraesCS6A01G243000 chr3A 91.415 431 25 2 1 419 691360486 691360916 1.160000e-161 580.0
22 TraesCS6A01G243000 chr5A 96.095 589 21 2 446 1034 436217830 436218416 0.000000e+00 959.0
23 TraesCS6A01G243000 chr5A 79.720 429 66 17 2 419 51541264 51540846 2.190000e-74 291.0
24 TraesCS6A01G243000 chr5A 82.069 290 36 14 141 424 326958941 326959220 3.750000e-57 233.0
25 TraesCS6A01G243000 chr3B 96.392 582 20 1 452 1033 29732001 29731421 0.000000e+00 957.0
26 TraesCS6A01G243000 chr3B 94.595 111 5 1 3656 3766 672778075 672778184 2.980000e-38 171.0
27 TraesCS6A01G243000 chr3B 94.393 107 6 0 3660 3766 681561746 681561852 1.390000e-36 165.0
28 TraesCS6A01G243000 chr3B 90.598 117 11 0 3660 3776 178386658 178386542 8.350000e-34 156.0
29 TraesCS6A01G243000 chr1A 95.848 578 23 1 454 1031 494796316 494796892 0.000000e+00 933.0
30 TraesCS6A01G243000 chr4A 89.387 424 39 5 2 419 717947950 717948373 4.270000e-146 529.0
31 TraesCS6A01G243000 chr2B 84.223 431 52 8 2 419 95495659 95495232 7.510000e-109 405.0
32 TraesCS6A01G243000 chr2B 85.714 77 9 2 1175 1250 584719643 584719718 5.170000e-11 80.5
33 TraesCS6A01G243000 chr1D 81.338 284 37 12 141 419 471230309 471230581 3.780000e-52 217.0
34 TraesCS6A01G243000 chr4B 92.857 126 5 3 3654 3776 479155622 479155498 4.950000e-41 180.0
35 TraesCS6A01G243000 chr7B 95.327 107 5 0 3660 3766 357651484 357651590 2.980000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G243000 chr6A 454674310 454680530 6220 False 11489.000000 11489 100.000000 1 6221 1 chr6A.!!$F2 6220
1 TraesCS6A01G243000 chr6D 317076139 317081526 5387 False 2909.666667 4754 97.254000 1031 6221 3 chr6D.!!$F1 5190
2 TraesCS6A01G243000 chr6B 507468970 507477606 8636 True 2763.666667 3696 95.210333 1051 6221 3 chr6B.!!$R2 5170
3 TraesCS6A01G243000 chr5B 548455535 548456114 579 False 1005.000000 1005 97.935000 450 1030 1 chr5B.!!$F1 580
4 TraesCS6A01G243000 chr2A 109593457 109594035 578 True 1005.000000 1005 97.935000 453 1033 1 chr2A.!!$R2 580
5 TraesCS6A01G243000 chr2A 105413183 105413765 582 True 994.000000 994 97.432000 450 1033 1 chr2A.!!$R1 583
6 TraesCS6A01G243000 chr1B 186456736 186457315 579 False 989.000000 989 97.418000 453 1033 1 chr1B.!!$F1 580
7 TraesCS6A01G243000 chr7A 252455361 252455947 586 True 968.000000 968 96.429000 446 1033 1 chr7A.!!$R3 587
8 TraesCS6A01G243000 chr3A 709913344 709913926 582 True 966.000000 966 96.575000 452 1034 1 chr3A.!!$R1 582
9 TraesCS6A01G243000 chr5A 436217830 436218416 586 False 959.000000 959 96.095000 446 1034 1 chr5A.!!$F2 588
10 TraesCS6A01G243000 chr3B 29731421 29732001 580 True 957.000000 957 96.392000 452 1033 1 chr3B.!!$R1 581
11 TraesCS6A01G243000 chr1A 494796316 494796892 576 False 933.000000 933 95.848000 454 1031 1 chr1A.!!$F1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.102120 CGTCAGAGGGAGCACTGATC 59.898 60.000 0.0 0.00 43.46 2.92 F
428 429 0.179081 GAGTCTAACATCCACCGCCC 60.179 60.000 0.0 0.00 0.00 6.13 F
430 431 0.743345 GTCTAACATCCACCGCCCAC 60.743 60.000 0.0 0.00 0.00 4.61 F
1054 1055 0.977395 CTCGGACTCCCAAGGAAGTT 59.023 55.000 0.0 0.00 0.00 2.66 F
1055 1056 1.348036 CTCGGACTCCCAAGGAAGTTT 59.652 52.381 0.0 0.00 0.00 2.66 F
2597 5974 1.411246 TGGTCACCTGTGTGTACTGTC 59.589 52.381 0.0 0.00 43.26 3.51 F
3050 6427 2.710220 TGTGCATGATGTCAAACTGC 57.290 45.000 0.0 1.21 0.00 4.40 F
3620 6997 2.880890 GTGGCTTGACTGTGTTGAGAAT 59.119 45.455 0.0 0.00 0.00 2.40 F
4102 7626 0.835276 TGAGATGGAGGGTGCTCATG 59.165 55.000 0.0 0.00 32.85 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1379 0.617413 AGTCCCCAGATGAACTGCAG 59.383 55.000 13.48 13.48 44.52 4.41 R
1677 1715 2.820059 AGCATTCAGTCGAACACAGA 57.180 45.000 0.00 0.00 32.81 3.41 R
2229 5606 5.163652 ACAAAAACTAAGCACTCAGTTCCAC 60.164 40.000 0.00 0.00 33.92 4.02 R
2597 5974 2.477863 GGCTATGGTGCAAAACTAAGCG 60.478 50.000 0.00 0.00 29.97 4.68 R
3050 6427 3.058016 CCAGTGACCTGCAAACTAATGTG 60.058 47.826 0.00 0.00 37.38 3.21 R
3472 6849 1.143684 ACCAAGCAGAGTGTTGGATGT 59.856 47.619 8.08 0.00 45.35 3.06 R
4102 7626 1.500844 CAGCAGTAGCAGCAACAGC 59.499 57.895 0.00 0.00 45.49 4.40 R
4967 8495 2.275134 TGACTTTTGCAGCATCCTGA 57.725 45.000 0.00 0.00 41.77 3.86 R
5966 9533 0.673644 CCATCAAGAACTTCGCCGGT 60.674 55.000 1.90 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.402528 CCACCATGGGTCGCGGAA 62.403 66.667 18.09 0.00 31.02 4.30
48 49 2.359354 CACCATGGGTCGCGGAAA 60.359 61.111 18.09 0.00 31.02 3.13
49 50 2.046314 ACCATGGGTCGCGGAAAG 60.046 61.111 18.09 0.00 0.00 2.62
50 51 2.824041 CCATGGGTCGCGGAAAGG 60.824 66.667 6.13 0.00 0.00 3.11
51 52 3.508840 CATGGGTCGCGGAAAGGC 61.509 66.667 6.13 0.00 0.00 4.35
52 53 4.796495 ATGGGTCGCGGAAAGGCC 62.796 66.667 6.13 0.00 0.00 5.19
73 74 2.811317 CGCAGGAGGAGCAACGTC 60.811 66.667 0.00 0.00 0.00 4.34
74 75 2.343758 GCAGGAGGAGCAACGTCA 59.656 61.111 0.00 0.00 35.40 4.35
75 76 1.739562 GCAGGAGGAGCAACGTCAG 60.740 63.158 0.00 0.00 35.40 3.51
76 77 1.967535 CAGGAGGAGCAACGTCAGA 59.032 57.895 0.00 0.00 35.40 3.27
77 78 0.108898 CAGGAGGAGCAACGTCAGAG 60.109 60.000 0.00 0.00 35.40 3.35
78 79 1.216710 GGAGGAGCAACGTCAGAGG 59.783 63.158 0.00 0.00 35.40 3.69
79 80 1.216710 GAGGAGCAACGTCAGAGGG 59.783 63.158 0.00 0.00 34.08 4.30
80 81 1.228894 AGGAGCAACGTCAGAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
81 82 1.216710 GGAGCAACGTCAGAGGGAG 59.783 63.158 0.00 0.00 0.00 4.30
82 83 1.446966 GAGCAACGTCAGAGGGAGC 60.447 63.158 0.00 0.00 0.00 4.70
83 84 2.159819 GAGCAACGTCAGAGGGAGCA 62.160 60.000 10.46 0.00 0.00 4.26
84 85 2.029844 GCAACGTCAGAGGGAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
85 86 1.668294 CAACGTCAGAGGGAGCACT 59.332 57.895 0.00 0.00 0.00 4.40
86 87 0.668706 CAACGTCAGAGGGAGCACTG 60.669 60.000 0.00 0.00 35.72 3.66
87 88 0.827925 AACGTCAGAGGGAGCACTGA 60.828 55.000 0.00 0.00 40.22 3.41
88 89 0.613292 ACGTCAGAGGGAGCACTGAT 60.613 55.000 0.00 0.00 43.46 2.90
89 90 0.102120 CGTCAGAGGGAGCACTGATC 59.898 60.000 0.00 0.00 43.46 2.92
90 91 0.102120 GTCAGAGGGAGCACTGATCG 59.898 60.000 0.00 0.00 43.46 3.69
91 92 1.039785 TCAGAGGGAGCACTGATCGG 61.040 60.000 0.00 0.00 38.08 4.18
92 93 1.760086 AGAGGGAGCACTGATCGGG 60.760 63.158 6.47 0.00 0.00 5.14
93 94 2.765807 AGGGAGCACTGATCGGGG 60.766 66.667 6.47 2.11 0.00 5.73
94 95 3.083997 GGGAGCACTGATCGGGGT 61.084 66.667 5.50 0.00 0.00 4.95
95 96 2.187946 GGAGCACTGATCGGGGTG 59.812 66.667 5.50 7.23 36.62 4.61
96 97 2.187946 GAGCACTGATCGGGGTGG 59.812 66.667 5.50 0.00 34.41 4.61
97 98 4.101448 AGCACTGATCGGGGTGGC 62.101 66.667 5.50 3.80 34.41 5.01
98 99 4.408821 GCACTGATCGGGGTGGCA 62.409 66.667 5.50 0.00 34.41 4.92
99 100 2.436646 CACTGATCGGGGTGGCAC 60.437 66.667 9.70 9.70 0.00 5.01
100 101 3.717294 ACTGATCGGGGTGGCACC 61.717 66.667 28.69 28.69 37.60 5.01
135 136 3.586961 TCGAGGAGCGAGGCGATG 61.587 66.667 0.00 0.00 45.59 3.84
136 137 3.586961 CGAGGAGCGAGGCGATGA 61.587 66.667 0.00 0.00 44.57 2.92
137 138 2.026879 GAGGAGCGAGGCGATGAC 59.973 66.667 0.00 0.00 0.00 3.06
138 139 3.815569 GAGGAGCGAGGCGATGACG 62.816 68.421 0.00 0.00 42.93 4.35
139 140 3.889044 GGAGCGAGGCGATGACGA 61.889 66.667 0.00 0.00 42.66 4.20
140 141 2.352915 GAGCGAGGCGATGACGAG 60.353 66.667 0.00 0.00 42.66 4.18
141 142 3.815569 GAGCGAGGCGATGACGAGG 62.816 68.421 0.00 0.00 42.66 4.63
143 144 4.193334 CGAGGCGATGACGAGGCA 62.193 66.667 0.00 0.00 42.66 4.75
144 145 2.583593 GAGGCGATGACGAGGCAC 60.584 66.667 0.00 0.00 42.66 5.01
145 146 4.148825 AGGCGATGACGAGGCACC 62.149 66.667 0.00 0.00 42.66 5.01
146 147 4.451150 GGCGATGACGAGGCACCA 62.451 66.667 0.00 0.00 42.66 4.17
147 148 2.202932 GCGATGACGAGGCACCAT 60.203 61.111 0.00 0.00 42.66 3.55
148 149 2.528743 GCGATGACGAGGCACCATG 61.529 63.158 0.00 0.00 42.66 3.66
149 150 1.884464 CGATGACGAGGCACCATGG 60.884 63.158 11.19 11.19 42.66 3.66
150 151 1.524621 GATGACGAGGCACCATGGG 60.525 63.158 18.09 6.26 0.00 4.00
151 152 3.704231 ATGACGAGGCACCATGGGC 62.704 63.158 18.09 16.17 0.00 5.36
159 160 4.854924 CACCATGGGCCATCGCGA 62.855 66.667 18.16 13.09 35.02 5.87
160 161 4.552365 ACCATGGGCCATCGCGAG 62.552 66.667 18.16 4.77 35.02 5.03
174 175 4.441695 CGAGAGGCTGCGAGGCAA 62.442 66.667 11.23 0.00 44.19 4.52
175 176 2.511145 GAGAGGCTGCGAGGCAAG 60.511 66.667 11.23 0.00 44.19 4.01
176 177 2.999648 AGAGGCTGCGAGGCAAGA 61.000 61.111 11.23 0.00 44.19 3.02
177 178 2.046892 GAGGCTGCGAGGCAAGAA 60.047 61.111 11.23 0.00 44.19 2.52
178 179 1.672356 GAGGCTGCGAGGCAAGAAA 60.672 57.895 11.23 0.00 44.19 2.52
179 180 1.916697 GAGGCTGCGAGGCAAGAAAC 61.917 60.000 11.23 0.00 44.19 2.78
180 181 2.174349 GCTGCGAGGCAAGAAACG 59.826 61.111 0.00 0.00 38.41 3.60
181 182 2.863153 CTGCGAGGCAAGAAACGG 59.137 61.111 0.00 0.00 38.41 4.44
182 183 3.314388 CTGCGAGGCAAGAAACGGC 62.314 63.158 0.00 0.00 38.41 5.68
183 184 4.445545 GCGAGGCAAGAAACGGCG 62.446 66.667 4.80 4.80 0.00 6.46
184 185 2.736995 CGAGGCAAGAAACGGCGA 60.737 61.111 16.62 0.00 0.00 5.54
185 186 2.730672 CGAGGCAAGAAACGGCGAG 61.731 63.158 16.62 0.00 0.00 5.03
186 187 2.358737 AGGCAAGAAACGGCGAGG 60.359 61.111 16.62 0.00 0.00 4.63
187 188 4.103103 GGCAAGAAACGGCGAGGC 62.103 66.667 16.62 7.27 0.00 4.70
188 189 3.353836 GCAAGAAACGGCGAGGCA 61.354 61.111 16.62 0.00 0.00 4.75
189 190 2.863153 CAAGAAACGGCGAGGCAG 59.137 61.111 16.62 0.00 0.00 4.85
190 191 1.961277 CAAGAAACGGCGAGGCAGT 60.961 57.895 16.62 0.00 38.82 4.40
191 192 0.669318 CAAGAAACGGCGAGGCAGTA 60.669 55.000 16.62 0.00 35.69 2.74
192 193 0.389948 AAGAAACGGCGAGGCAGTAG 60.390 55.000 16.62 0.00 35.69 2.57
193 194 2.434359 AAACGGCGAGGCAGTAGC 60.434 61.111 16.62 0.00 35.69 3.58
194 195 4.796231 AACGGCGAGGCAGTAGCG 62.796 66.667 16.62 0.00 43.41 4.26
196 197 4.914420 CGGCGAGGCAGTAGCGAG 62.914 72.222 0.00 0.00 43.41 5.03
197 198 3.518998 GGCGAGGCAGTAGCGAGA 61.519 66.667 0.00 0.00 43.41 4.04
198 199 2.025441 GCGAGGCAGTAGCGAGAG 59.975 66.667 0.00 0.00 43.41 3.20
233 234 2.110006 GCGGGAGGAGCCAAGATC 59.890 66.667 0.00 0.00 38.95 2.75
234 235 2.419198 CGGGAGGAGCCAAGATCG 59.581 66.667 0.00 0.00 38.95 3.69
235 236 2.825264 GGGAGGAGCCAAGATCGG 59.175 66.667 0.00 0.00 38.95 4.18
236 237 2.066999 GGGAGGAGCCAAGATCGGT 61.067 63.158 0.00 0.00 38.95 4.69
237 238 1.144936 GGAGGAGCCAAGATCGGTG 59.855 63.158 0.00 0.00 36.34 4.94
238 239 1.522580 GAGGAGCCAAGATCGGTGC 60.523 63.158 0.00 0.00 0.00 5.01
239 240 2.892425 GGAGCCAAGATCGGTGCG 60.892 66.667 0.00 0.00 0.00 5.34
240 241 2.184322 GAGCCAAGATCGGTGCGA 59.816 61.111 0.00 0.00 41.13 5.10
241 242 2.125512 AGCCAAGATCGGTGCGAC 60.126 61.111 0.00 0.00 39.18 5.19
242 243 3.554692 GCCAAGATCGGTGCGACG 61.555 66.667 0.00 0.00 39.18 5.12
243 244 2.885644 CCAAGATCGGTGCGACGG 60.886 66.667 0.00 0.00 39.18 4.79
244 245 3.554692 CAAGATCGGTGCGACGGC 61.555 66.667 0.00 0.00 39.18 5.68
263 264 3.567797 GCGGCAGCGGAAGACATC 61.568 66.667 3.69 0.00 0.00 3.06
264 265 3.257561 CGGCAGCGGAAGACATCG 61.258 66.667 0.00 0.00 0.00 3.84
265 266 2.125512 GGCAGCGGAAGACATCGT 60.126 61.111 0.00 0.00 0.00 3.73
266 267 1.141019 GGCAGCGGAAGACATCGTA 59.859 57.895 0.00 0.00 0.00 3.43
267 268 0.459585 GGCAGCGGAAGACATCGTAA 60.460 55.000 0.00 0.00 0.00 3.18
268 269 0.645868 GCAGCGGAAGACATCGTAAC 59.354 55.000 0.00 0.00 0.00 2.50
269 270 1.278238 CAGCGGAAGACATCGTAACC 58.722 55.000 0.00 0.00 0.00 2.85
270 271 1.135083 CAGCGGAAGACATCGTAACCT 60.135 52.381 0.00 0.00 0.00 3.50
271 272 2.098607 CAGCGGAAGACATCGTAACCTA 59.901 50.000 0.00 0.00 0.00 3.08
272 273 2.756760 AGCGGAAGACATCGTAACCTAA 59.243 45.455 0.00 0.00 0.00 2.69
273 274 3.194116 AGCGGAAGACATCGTAACCTAAA 59.806 43.478 0.00 0.00 0.00 1.85
274 275 3.305361 GCGGAAGACATCGTAACCTAAAC 59.695 47.826 0.00 0.00 0.00 2.01
275 276 4.741342 CGGAAGACATCGTAACCTAAACT 58.259 43.478 0.00 0.00 0.00 2.66
276 277 4.561606 CGGAAGACATCGTAACCTAAACTG 59.438 45.833 0.00 0.00 0.00 3.16
277 278 5.620654 CGGAAGACATCGTAACCTAAACTGA 60.621 44.000 0.00 0.00 0.00 3.41
278 279 6.338937 GGAAGACATCGTAACCTAAACTGAT 58.661 40.000 0.00 0.00 0.00 2.90
279 280 7.486647 GGAAGACATCGTAACCTAAACTGATA 58.513 38.462 0.00 0.00 0.00 2.15
280 281 7.434602 GGAAGACATCGTAACCTAAACTGATAC 59.565 40.741 0.00 0.00 0.00 2.24
281 282 6.803642 AGACATCGTAACCTAAACTGATACC 58.196 40.000 0.00 0.00 0.00 2.73
282 283 6.379133 AGACATCGTAACCTAAACTGATACCA 59.621 38.462 0.00 0.00 0.00 3.25
283 284 7.069578 AGACATCGTAACCTAAACTGATACCAT 59.930 37.037 0.00 0.00 0.00 3.55
284 285 6.984474 ACATCGTAACCTAAACTGATACCATG 59.016 38.462 0.00 0.00 0.00 3.66
285 286 6.534475 TCGTAACCTAAACTGATACCATGT 57.466 37.500 0.00 0.00 0.00 3.21
286 287 6.938507 TCGTAACCTAAACTGATACCATGTT 58.061 36.000 0.00 0.00 0.00 2.71
287 288 8.065473 TCGTAACCTAAACTGATACCATGTTA 57.935 34.615 0.00 0.00 0.00 2.41
288 289 8.530311 TCGTAACCTAAACTGATACCATGTTAA 58.470 33.333 0.00 0.00 0.00 2.01
289 290 9.153721 CGTAACCTAAACTGATACCATGTTAAA 57.846 33.333 0.00 0.00 0.00 1.52
291 292 8.927675 AACCTAAACTGATACCATGTTAAACA 57.072 30.769 0.00 0.00 0.00 2.83
292 293 9.528489 AACCTAAACTGATACCATGTTAAACAT 57.472 29.630 0.00 0.00 39.91 2.71
308 309 9.816354 ATGTTAAACATATAATTTGGGAACTGC 57.184 29.630 0.00 0.00 36.99 4.40
309 310 9.030452 TGTTAAACATATAATTTGGGAACTGCT 57.970 29.630 0.00 0.00 0.00 4.24
310 311 9.869757 GTTAAACATATAATTTGGGAACTGCTT 57.130 29.630 0.00 0.00 0.00 3.91
311 312 9.868277 TTAAACATATAATTTGGGAACTGCTTG 57.132 29.630 0.00 0.00 0.00 4.01
312 313 7.716799 AACATATAATTTGGGAACTGCTTGA 57.283 32.000 0.00 0.00 0.00 3.02
313 314 7.100458 ACATATAATTTGGGAACTGCTTGAC 57.900 36.000 0.00 0.00 0.00 3.18
314 315 6.663093 ACATATAATTTGGGAACTGCTTGACA 59.337 34.615 0.00 0.00 0.00 3.58
315 316 3.733443 AATTTGGGAACTGCTTGACAC 57.267 42.857 0.00 0.00 0.00 3.67
316 317 1.398692 TTTGGGAACTGCTTGACACC 58.601 50.000 0.00 0.00 0.00 4.16
317 318 0.467290 TTGGGAACTGCTTGACACCC 60.467 55.000 0.00 0.00 37.99 4.61
318 319 1.603739 GGGAACTGCTTGACACCCC 60.604 63.158 0.00 0.00 0.00 4.95
319 320 1.456287 GGAACTGCTTGACACCCCT 59.544 57.895 0.00 0.00 0.00 4.79
320 321 0.690762 GGAACTGCTTGACACCCCTA 59.309 55.000 0.00 0.00 0.00 3.53
321 322 1.073284 GGAACTGCTTGACACCCCTAA 59.927 52.381 0.00 0.00 0.00 2.69
322 323 2.152016 GAACTGCTTGACACCCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
323 324 0.400594 ACTGCTTGACACCCCTAACC 59.599 55.000 0.00 0.00 0.00 2.85
324 325 0.693049 CTGCTTGACACCCCTAACCT 59.307 55.000 0.00 0.00 0.00 3.50
325 326 0.400213 TGCTTGACACCCCTAACCTG 59.600 55.000 0.00 0.00 0.00 4.00
326 327 0.690762 GCTTGACACCCCTAACCTGA 59.309 55.000 0.00 0.00 0.00 3.86
327 328 1.339151 GCTTGACACCCCTAACCTGAG 60.339 57.143 0.00 0.00 0.00 3.35
328 329 1.279271 CTTGACACCCCTAACCTGAGG 59.721 57.143 0.00 0.00 36.23 3.86
329 330 0.192566 TGACACCCCTAACCTGAGGT 59.807 55.000 0.00 0.00 37.65 3.85
331 332 2.773458 CACCCCTAACCTGAGGTGT 58.227 57.895 4.15 0.00 43.91 4.16
332 333 0.324943 CACCCCTAACCTGAGGTGTG 59.675 60.000 4.15 4.60 43.91 3.82
333 334 0.840722 ACCCCTAACCTGAGGTGTGG 60.841 60.000 4.15 10.60 35.34 4.17
334 335 1.299976 CCCTAACCTGAGGTGTGGC 59.700 63.158 4.15 0.00 35.34 5.01
335 336 1.201429 CCCTAACCTGAGGTGTGGCT 61.201 60.000 4.15 0.00 35.34 4.75
336 337 1.568504 CCTAACCTGAGGTGTGGCTA 58.431 55.000 4.15 0.00 35.34 3.93
337 338 2.119495 CCTAACCTGAGGTGTGGCTAT 58.881 52.381 4.15 0.00 35.34 2.97
338 339 2.103263 CCTAACCTGAGGTGTGGCTATC 59.897 54.545 4.15 0.00 35.34 2.08
339 340 1.958288 AACCTGAGGTGTGGCTATCT 58.042 50.000 4.15 0.00 35.34 1.98
340 341 1.490574 ACCTGAGGTGTGGCTATCTC 58.509 55.000 1.77 0.00 32.98 2.75
341 342 1.273267 ACCTGAGGTGTGGCTATCTCA 60.273 52.381 1.77 5.43 32.98 3.27
342 343 2.045524 CCTGAGGTGTGGCTATCTCAT 58.954 52.381 5.90 0.00 35.95 2.90
343 344 2.437281 CCTGAGGTGTGGCTATCTCATT 59.563 50.000 5.90 0.00 35.95 2.57
344 345 3.643320 CCTGAGGTGTGGCTATCTCATTA 59.357 47.826 5.90 0.00 35.95 1.90
345 346 4.285517 CCTGAGGTGTGGCTATCTCATTAT 59.714 45.833 5.90 0.00 35.95 1.28
346 347 5.481824 CCTGAGGTGTGGCTATCTCATTATA 59.518 44.000 5.90 0.00 35.95 0.98
347 348 6.155910 CCTGAGGTGTGGCTATCTCATTATAT 59.844 42.308 5.90 0.00 35.95 0.86
348 349 7.343057 CCTGAGGTGTGGCTATCTCATTATATA 59.657 40.741 5.90 0.00 35.95 0.86
349 350 8.298729 TGAGGTGTGGCTATCTCATTATATAG 57.701 38.462 1.91 0.00 32.10 1.31
350 351 8.116026 TGAGGTGTGGCTATCTCATTATATAGA 58.884 37.037 1.91 0.00 32.10 1.98
351 352 8.532186 AGGTGTGGCTATCTCATTATATAGAG 57.468 38.462 0.00 0.00 0.00 2.43
352 353 7.563188 AGGTGTGGCTATCTCATTATATAGAGG 59.437 40.741 0.00 0.00 32.76 3.69
353 354 7.343316 GGTGTGGCTATCTCATTATATAGAGGT 59.657 40.741 0.00 0.00 32.76 3.85
354 355 9.409918 GTGTGGCTATCTCATTATATAGAGGTA 57.590 37.037 0.00 0.00 32.76 3.08
357 358 9.815306 TGGCTATCTCATTATATAGAGGTATCC 57.185 37.037 5.69 5.69 35.37 2.59
358 359 9.815306 GGCTATCTCATTATATAGAGGTATCCA 57.185 37.037 7.05 0.00 35.07 3.41
363 364 9.928618 TCTCATTATATAGAGGTATCCAAGAGG 57.071 37.037 0.00 0.00 32.76 3.69
364 365 9.707957 CTCATTATATAGAGGTATCCAAGAGGT 57.292 37.037 0.00 0.00 35.89 3.85
371 372 6.980416 AGAGGTATCCAAGAGGTACAATAC 57.020 41.667 0.00 0.00 35.89 1.89
372 373 6.441222 AGAGGTATCCAAGAGGTACAATACA 58.559 40.000 0.00 0.00 35.89 2.29
373 374 6.901300 AGAGGTATCCAAGAGGTACAATACAA 59.099 38.462 0.00 0.00 35.89 2.41
374 375 7.569111 AGAGGTATCCAAGAGGTACAATACAAT 59.431 37.037 0.00 0.00 35.89 2.71
375 376 7.509546 AGGTATCCAAGAGGTACAATACAATG 58.490 38.462 0.00 0.00 35.89 2.82
376 377 7.127339 AGGTATCCAAGAGGTACAATACAATGT 59.873 37.037 0.00 0.00 37.32 2.71
377 378 7.773690 GGTATCCAAGAGGTACAATACAATGTT 59.226 37.037 0.00 0.00 34.75 2.71
378 379 9.826574 GTATCCAAGAGGTACAATACAATGTTA 57.173 33.333 0.00 0.00 34.75 2.41
379 380 8.732746 ATCCAAGAGGTACAATACAATGTTAC 57.267 34.615 0.00 0.00 34.75 2.50
380 381 7.681679 TCCAAGAGGTACAATACAATGTTACA 58.318 34.615 0.00 0.00 34.75 2.41
381 382 7.822334 TCCAAGAGGTACAATACAATGTTACAG 59.178 37.037 0.00 0.00 34.75 2.74
382 383 7.606456 CCAAGAGGTACAATACAATGTTACAGT 59.394 37.037 0.00 0.00 34.75 3.55
383 384 9.647797 CAAGAGGTACAATACAATGTTACAGTA 57.352 33.333 0.00 0.00 34.75 2.74
384 385 9.649167 AAGAGGTACAATACAATGTTACAGTAC 57.351 33.333 0.00 0.72 34.75 2.73
385 386 8.809066 AGAGGTACAATACAATGTTACAGTACA 58.191 33.333 14.87 0.00 33.99 2.90
386 387 8.997621 AGGTACAATACAATGTTACAGTACAG 57.002 34.615 14.87 0.00 33.99 2.74
387 388 8.809066 AGGTACAATACAATGTTACAGTACAGA 58.191 33.333 14.87 0.00 33.99 3.41
388 389 9.595823 GGTACAATACAATGTTACAGTACAGAT 57.404 33.333 14.87 0.00 33.99 2.90
398 399 8.888579 ATGTTACAGTACAGATATACAAAGGC 57.111 34.615 0.00 0.00 0.00 4.35
399 400 8.074613 TGTTACAGTACAGATATACAAAGGCT 57.925 34.615 0.00 0.00 0.00 4.58
400 401 9.192642 TGTTACAGTACAGATATACAAAGGCTA 57.807 33.333 0.00 0.00 0.00 3.93
401 402 9.460906 GTTACAGTACAGATATACAAAGGCTAC 57.539 37.037 0.00 0.00 0.00 3.58
402 403 6.736123 ACAGTACAGATATACAAAGGCTACG 58.264 40.000 0.00 0.00 0.00 3.51
403 404 6.320672 ACAGTACAGATATACAAAGGCTACGT 59.679 38.462 0.00 0.00 0.00 3.57
404 405 7.500227 ACAGTACAGATATACAAAGGCTACGTA 59.500 37.037 0.00 0.00 0.00 3.57
405 406 8.512956 CAGTACAGATATACAAAGGCTACGTAT 58.487 37.037 11.96 11.96 0.00 3.06
406 407 9.730705 AGTACAGATATACAAAGGCTACGTATA 57.269 33.333 14.71 14.71 33.77 1.47
416 417 8.915057 ACAAAGGCTACGTATATAGAGTCTAA 57.085 34.615 3.45 0.00 0.00 2.10
417 418 8.782144 ACAAAGGCTACGTATATAGAGTCTAAC 58.218 37.037 3.45 0.00 0.00 2.34
418 419 8.781196 CAAAGGCTACGTATATAGAGTCTAACA 58.219 37.037 3.45 0.00 0.00 2.41
419 420 9.517868 AAAGGCTACGTATATAGAGTCTAACAT 57.482 33.333 3.45 3.66 0.00 2.71
420 421 8.721019 AGGCTACGTATATAGAGTCTAACATC 57.279 38.462 3.45 0.00 0.00 3.06
421 422 7.769970 AGGCTACGTATATAGAGTCTAACATCC 59.230 40.741 3.45 0.00 0.00 3.51
422 423 7.551974 GGCTACGTATATAGAGTCTAACATCCA 59.448 40.741 3.45 0.00 0.00 3.41
423 424 8.389603 GCTACGTATATAGAGTCTAACATCCAC 58.610 40.741 3.45 0.00 0.00 4.02
424 425 7.684937 ACGTATATAGAGTCTAACATCCACC 57.315 40.000 3.45 0.00 0.00 4.61
425 426 6.370994 ACGTATATAGAGTCTAACATCCACCG 59.629 42.308 3.45 2.21 0.00 4.94
426 427 5.646577 ATATAGAGTCTAACATCCACCGC 57.353 43.478 3.45 0.00 0.00 5.68
427 428 0.824759 AGAGTCTAACATCCACCGCC 59.175 55.000 0.00 0.00 0.00 6.13
428 429 0.179081 GAGTCTAACATCCACCGCCC 60.179 60.000 0.00 0.00 0.00 6.13
429 430 0.907704 AGTCTAACATCCACCGCCCA 60.908 55.000 0.00 0.00 0.00 5.36
430 431 0.743345 GTCTAACATCCACCGCCCAC 60.743 60.000 0.00 0.00 0.00 4.61
431 432 1.813753 CTAACATCCACCGCCCACG 60.814 63.158 0.00 0.00 39.67 4.94
432 433 2.233605 CTAACATCCACCGCCCACGA 62.234 60.000 0.00 0.00 43.93 4.35
433 434 2.233605 TAACATCCACCGCCCACGAG 62.234 60.000 0.00 0.00 43.93 4.18
434 435 4.082523 CATCCACCGCCCACGAGT 62.083 66.667 0.00 0.00 43.93 4.18
435 436 2.363276 ATCCACCGCCCACGAGTA 60.363 61.111 0.00 0.00 43.93 2.59
436 437 2.423898 ATCCACCGCCCACGAGTAG 61.424 63.158 0.00 0.00 43.93 2.57
437 438 2.849096 ATCCACCGCCCACGAGTAGA 62.849 60.000 0.00 0.00 43.93 2.59
438 439 2.490217 CACCGCCCACGAGTAGAG 59.510 66.667 0.00 0.00 43.93 2.43
439 440 3.450115 ACCGCCCACGAGTAGAGC 61.450 66.667 0.00 0.00 43.93 4.09
440 441 3.141488 CCGCCCACGAGTAGAGCT 61.141 66.667 0.00 0.00 43.93 4.09
441 442 2.103143 CGCCCACGAGTAGAGCTG 59.897 66.667 0.00 0.00 43.93 4.24
442 443 2.202810 GCCCACGAGTAGAGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
443 444 2.716017 GCCCACGAGTAGAGCTGCT 61.716 63.158 0.00 0.00 0.00 4.24
444 445 1.435515 CCCACGAGTAGAGCTGCTC 59.564 63.158 21.72 21.72 38.67 4.26
793 794 2.093128 GGCCCCAAAGAATACTCTTCGA 60.093 50.000 0.00 0.00 41.23 3.71
908 909 2.671963 GCCCACTTCGGTCAACCC 60.672 66.667 0.00 0.00 0.00 4.11
950 951 4.394712 CCCACTGGAGGCCGACAC 62.395 72.222 0.00 0.00 0.00 3.67
1045 1046 2.115343 AAAAATCTGCTCGGACTCCC 57.885 50.000 0.00 0.00 0.00 4.30
1047 1048 0.984230 AAATCTGCTCGGACTCCCAA 59.016 50.000 0.00 0.00 0.00 4.12
1049 1050 1.333636 ATCTGCTCGGACTCCCAAGG 61.334 60.000 0.00 0.00 0.00 3.61
1051 1052 1.535444 TGCTCGGACTCCCAAGGAA 60.535 57.895 0.00 0.00 0.00 3.36
1052 1053 1.219393 GCTCGGACTCCCAAGGAAG 59.781 63.158 0.00 0.00 0.00 3.46
1054 1055 0.977395 CTCGGACTCCCAAGGAAGTT 59.023 55.000 0.00 0.00 0.00 2.66
1055 1056 1.348036 CTCGGACTCCCAAGGAAGTTT 59.652 52.381 0.00 0.00 0.00 2.66
1287 1324 2.361119 AGGGTTTTGCTTCCTTTTCGTC 59.639 45.455 0.00 0.00 0.00 4.20
1538 1575 1.722751 GCTTTCGATTATGCGATGCGG 60.723 52.381 0.00 0.00 40.35 5.69
1666 1704 5.744666 TCTGTTTACTTTTTGTTCCTCCG 57.255 39.130 0.00 0.00 0.00 4.63
1677 1715 2.280552 TTCCTCCGTAGCGCACCTT 61.281 57.895 11.47 0.00 0.00 3.50
2229 5606 5.221322 GGCCTGCTTTAGAGATTATTTTGGG 60.221 44.000 0.00 0.00 0.00 4.12
2256 5633 6.910972 GGAACTGAGTGCTTAGTTTTTGTTAC 59.089 38.462 10.08 0.00 39.15 2.50
2432 5809 3.053455 GCCATACTCGAGTTAGATGTGC 58.947 50.000 25.44 19.92 0.00 4.57
2433 5810 3.243569 GCCATACTCGAGTTAGATGTGCT 60.244 47.826 25.44 0.00 0.00 4.40
2434 5811 4.023107 GCCATACTCGAGTTAGATGTGCTA 60.023 45.833 25.44 0.95 0.00 3.49
2435 5812 5.453648 CCATACTCGAGTTAGATGTGCTAC 58.546 45.833 25.44 0.00 0.00 3.58
2436 5813 5.008712 CCATACTCGAGTTAGATGTGCTACA 59.991 44.000 25.44 0.11 0.00 2.74
2437 5814 6.459710 CCATACTCGAGTTAGATGTGCTACAA 60.460 42.308 25.44 0.00 0.00 2.41
2438 5815 4.987832 ACTCGAGTTAGATGTGCTACAAG 58.012 43.478 13.58 0.00 0.00 3.16
2439 5816 3.770666 TCGAGTTAGATGTGCTACAAGC 58.229 45.455 0.00 0.00 42.82 4.01
2597 5974 1.411246 TGGTCACCTGTGTGTACTGTC 59.589 52.381 0.00 0.00 43.26 3.51
2798 6175 6.146216 CGGATTGTTAAATAAGCACAACACA 58.854 36.000 0.00 0.00 33.33 3.72
2814 6191 4.397730 ACAACACATAACAGTTCAGCAACA 59.602 37.500 0.00 0.00 34.60 3.33
3050 6427 2.710220 TGTGCATGATGTCAAACTGC 57.290 45.000 0.00 1.21 0.00 4.40
3097 6474 7.878477 AACTTGAGCACATGTTCAAATATTG 57.122 32.000 12.74 5.16 43.01 1.90
3111 6488 7.814107 TGTTCAAATATTGAGATCTGTTTTGGC 59.186 33.333 0.00 1.85 41.38 4.52
3472 6849 6.865834 AGTATTCCCAAACAATATGGCAAA 57.134 33.333 0.00 0.00 36.58 3.68
3546 6923 2.978156 TGAACTTCAAAGCATCCCCT 57.022 45.000 0.00 0.00 0.00 4.79
3620 6997 2.880890 GTGGCTTGACTGTGTTGAGAAT 59.119 45.455 0.00 0.00 0.00 2.40
3716 7093 7.233389 ACGGATGTATCTAGCACTGAAATAT 57.767 36.000 0.00 0.00 0.00 1.28
3827 7205 6.831664 ACCCAACTCAATAGTTCATATCCT 57.168 37.500 0.00 0.00 44.28 3.24
3877 7255 8.554528 ACGCATCTGCTAATATATATGCATTTC 58.445 33.333 3.54 5.03 39.68 2.17
3878 7256 8.553696 CGCATCTGCTAATATATATGCATTTCA 58.446 33.333 3.54 0.00 39.68 2.69
3953 7477 9.556030 GATAGGTTTTATAAACAAACAGCTGAC 57.444 33.333 23.35 2.48 36.07 3.51
4102 7626 0.835276 TGAGATGGAGGGTGCTCATG 59.165 55.000 0.00 0.00 32.85 3.07
4698 8226 9.734620 TTCAGATTTTTAGCATTTCCGATATTG 57.265 29.630 0.00 0.00 0.00 1.90
4699 8227 8.352201 TCAGATTTTTAGCATTTCCGATATTGG 58.648 33.333 2.04 2.04 0.00 3.16
4700 8228 8.137437 CAGATTTTTAGCATTTCCGATATTGGT 58.863 33.333 8.94 0.00 0.00 3.67
4723 8251 7.068839 TGGTTTGCTTTTTCTATTGTCCTGTTA 59.931 33.333 0.00 0.00 0.00 2.41
4726 8254 5.767665 TGCTTTTTCTATTGTCCTGTTAGCA 59.232 36.000 0.00 0.00 0.00 3.49
4745 8273 9.646427 TGTTAGCAGTTTGTTTTATCAAAAAGT 57.354 25.926 0.00 0.00 38.71 2.66
4761 8289 8.831715 ATCAAAAAGTTTGTCACTGTTTTCTT 57.168 26.923 0.98 0.00 39.63 2.52
4841 8369 9.722056 GTAAAATATGCTCAGTATTGAACTTGG 57.278 33.333 0.00 0.00 35.76 3.61
4843 8371 7.944729 AATATGCTCAGTATTGAACTTGGTT 57.055 32.000 0.00 0.00 35.76 3.67
4886 8414 7.558807 TCATCTTTTCTGATGCCTTCATTGTAT 59.441 33.333 0.00 0.00 42.44 2.29
4887 8415 8.843262 CATCTTTTCTGATGCCTTCATTGTATA 58.157 33.333 0.00 0.00 37.59 1.47
4889 8417 8.049117 TCTTTTCTGATGCCTTCATTGTATAGT 58.951 33.333 0.00 0.00 32.72 2.12
4890 8418 9.330063 CTTTTCTGATGCCTTCATTGTATAGTA 57.670 33.333 0.00 0.00 32.72 1.82
4891 8419 8.893219 TTTCTGATGCCTTCATTGTATAGTAG 57.107 34.615 0.00 0.00 32.72 2.57
4892 8420 7.603180 TCTGATGCCTTCATTGTATAGTAGT 57.397 36.000 0.00 0.00 32.72 2.73
4929 8457 8.579863 GGATTTGGTTGATTCCCTCTATATTTG 58.420 37.037 0.00 0.00 0.00 2.32
4930 8458 9.354673 GATTTGGTTGATTCCCTCTATATTTGA 57.645 33.333 0.00 0.00 0.00 2.69
4931 8459 9.713684 ATTTGGTTGATTCCCTCTATATTTGAA 57.286 29.630 0.00 0.00 0.00 2.69
4935 8463 9.847224 GGTTGATTCCCTCTATATTTGAACTTA 57.153 33.333 0.00 0.00 0.00 2.24
5159 8687 4.578928 GGAAAAACAGAGACTTGTTGCCTA 59.421 41.667 4.48 0.00 40.24 3.93
5184 8713 2.857592 AAACTGTGCTCTTTGTGCAG 57.142 45.000 0.00 0.00 41.41 4.41
5258 8787 9.076596 GTATTAGTTGCTGGATTGAAAAATGTC 57.923 33.333 0.00 0.00 0.00 3.06
5265 8794 9.679661 TTGCTGGATTGAAAAATGTCTACTATA 57.320 29.630 0.00 0.00 0.00 1.31
5266 8795 9.851686 TGCTGGATTGAAAAATGTCTACTATAT 57.148 29.630 0.00 0.00 0.00 0.86
5416 8945 5.904080 GTCATGAAAAAGAAGTCACAACTCG 59.096 40.000 0.00 0.00 33.48 4.18
5513 9042 9.010029 GTGTAGAAAGGAAATATCTCCAAAACA 57.990 33.333 0.00 0.00 38.02 2.83
5546 9113 1.191944 CTGTATGCGACTACTGCACG 58.808 55.000 0.00 0.00 46.57 5.34
5800 9367 2.821366 GTGCTCCATCCAGTGCCG 60.821 66.667 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.910914 TTTCCGCGACCCATGGTGG 62.911 63.158 8.23 1.70 35.25 4.61
31 32 2.359354 TTTCCGCGACCCATGGTG 60.359 61.111 8.23 4.77 35.25 4.17
32 33 2.046314 CTTTCCGCGACCCATGGT 60.046 61.111 8.23 0.00 39.44 3.55
33 34 2.824041 CCTTTCCGCGACCCATGG 60.824 66.667 8.23 4.14 0.00 3.66
34 35 3.508840 GCCTTTCCGCGACCCATG 61.509 66.667 8.23 0.00 0.00 3.66
35 36 4.796495 GGCCTTTCCGCGACCCAT 62.796 66.667 8.23 0.00 0.00 4.00
55 56 4.379243 ACGTTGCTCCTCCTGCGG 62.379 66.667 0.00 0.00 0.00 5.69
56 57 2.811317 GACGTTGCTCCTCCTGCG 60.811 66.667 0.00 0.00 0.00 5.18
57 58 1.739562 CTGACGTTGCTCCTCCTGC 60.740 63.158 0.00 0.00 0.00 4.85
58 59 0.108898 CTCTGACGTTGCTCCTCCTG 60.109 60.000 0.00 0.00 0.00 3.86
59 60 1.254284 CCTCTGACGTTGCTCCTCCT 61.254 60.000 0.00 0.00 0.00 3.69
60 61 1.216710 CCTCTGACGTTGCTCCTCC 59.783 63.158 0.00 0.00 0.00 4.30
61 62 1.216710 CCCTCTGACGTTGCTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
62 63 1.228894 TCCCTCTGACGTTGCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
63 64 1.216710 CTCCCTCTGACGTTGCTCC 59.783 63.158 0.00 0.00 0.00 4.70
64 65 1.446966 GCTCCCTCTGACGTTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
65 66 2.210013 TGCTCCCTCTGACGTTGCT 61.210 57.895 0.00 0.00 0.00 3.91
66 67 2.029844 GTGCTCCCTCTGACGTTGC 61.030 63.158 0.00 0.00 0.00 4.17
67 68 0.668706 CAGTGCTCCCTCTGACGTTG 60.669 60.000 0.00 0.00 35.18 4.10
68 69 0.827925 TCAGTGCTCCCTCTGACGTT 60.828 55.000 0.00 0.00 36.85 3.99
69 70 0.613292 ATCAGTGCTCCCTCTGACGT 60.613 55.000 0.00 0.00 42.42 4.34
70 71 0.102120 GATCAGTGCTCCCTCTGACG 59.898 60.000 0.00 0.00 42.42 4.35
71 72 0.102120 CGATCAGTGCTCCCTCTGAC 59.898 60.000 0.00 0.00 42.42 3.51
72 73 1.039785 CCGATCAGTGCTCCCTCTGA 61.040 60.000 0.00 0.00 43.39 3.27
73 74 1.440893 CCGATCAGTGCTCCCTCTG 59.559 63.158 0.00 0.00 34.66 3.35
74 75 1.760086 CCCGATCAGTGCTCCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
75 76 2.801631 CCCCGATCAGTGCTCCCTC 61.802 68.421 0.00 0.00 0.00 4.30
76 77 2.765807 CCCCGATCAGTGCTCCCT 60.766 66.667 0.00 0.00 0.00 4.20
77 78 3.083997 ACCCCGATCAGTGCTCCC 61.084 66.667 0.00 0.00 0.00 4.30
78 79 2.187946 CACCCCGATCAGTGCTCC 59.812 66.667 0.00 0.00 0.00 4.70
79 80 2.187946 CCACCCCGATCAGTGCTC 59.812 66.667 0.00 0.00 32.48 4.26
80 81 4.101448 GCCACCCCGATCAGTGCT 62.101 66.667 0.00 0.00 32.48 4.40
81 82 4.408821 TGCCACCCCGATCAGTGC 62.409 66.667 0.00 0.00 32.48 4.40
82 83 2.436646 GTGCCACCCCGATCAGTG 60.437 66.667 0.00 0.00 0.00 3.66
83 84 3.717294 GGTGCCACCCCGATCAGT 61.717 66.667 1.17 0.00 30.04 3.41
111 112 3.656763 TCGCTCCTCGATCGGATC 58.343 61.111 16.41 7.95 43.16 3.36
118 119 3.586961 CATCGCCTCGCTCCTCGA 61.587 66.667 0.00 0.00 46.29 4.04
119 120 3.586961 TCATCGCCTCGCTCCTCG 61.587 66.667 0.00 0.00 40.15 4.63
120 121 2.026879 GTCATCGCCTCGCTCCTC 59.973 66.667 0.00 0.00 0.00 3.71
121 122 3.893763 CGTCATCGCCTCGCTCCT 61.894 66.667 0.00 0.00 0.00 3.69
122 123 3.815569 CTCGTCATCGCCTCGCTCC 62.816 68.421 0.00 0.00 36.96 4.70
123 124 2.352915 CTCGTCATCGCCTCGCTC 60.353 66.667 0.00 0.00 36.96 5.03
124 125 3.893763 CCTCGTCATCGCCTCGCT 61.894 66.667 0.00 0.00 36.96 4.93
126 127 4.193334 TGCCTCGTCATCGCCTCG 62.193 66.667 0.00 0.00 36.96 4.63
127 128 2.583593 GTGCCTCGTCATCGCCTC 60.584 66.667 0.00 0.00 36.96 4.70
128 129 4.148825 GGTGCCTCGTCATCGCCT 62.149 66.667 0.00 0.00 36.96 5.52
129 130 3.740128 ATGGTGCCTCGTCATCGCC 62.740 63.158 0.00 0.00 36.96 5.54
130 131 2.202932 ATGGTGCCTCGTCATCGC 60.203 61.111 0.00 0.00 36.96 4.58
131 132 1.884464 CCATGGTGCCTCGTCATCG 60.884 63.158 2.57 0.00 38.55 3.84
132 133 1.524621 CCCATGGTGCCTCGTCATC 60.525 63.158 11.73 0.00 0.00 2.92
133 134 2.591753 CCCATGGTGCCTCGTCAT 59.408 61.111 11.73 0.00 0.00 3.06
134 135 4.408821 GCCCATGGTGCCTCGTCA 62.409 66.667 11.73 0.00 0.00 4.35
142 143 4.854924 TCGCGATGGCCCATGGTG 62.855 66.667 12.58 12.58 35.02 4.17
143 144 4.552365 CTCGCGATGGCCCATGGT 62.552 66.667 10.36 0.00 35.02 3.55
144 145 4.240103 TCTCGCGATGGCCCATGG 62.240 66.667 10.36 4.14 35.02 3.66
145 146 2.664185 CTCTCGCGATGGCCCATG 60.664 66.667 10.36 0.00 35.02 3.66
146 147 3.933722 CCTCTCGCGATGGCCCAT 61.934 66.667 10.36 0.00 35.02 4.00
157 158 4.441695 TTGCCTCGCAGCCTCTCG 62.442 66.667 0.00 0.00 40.61 4.04
158 159 2.511145 CTTGCCTCGCAGCCTCTC 60.511 66.667 0.00 0.00 40.61 3.20
159 160 2.116983 TTTCTTGCCTCGCAGCCTCT 62.117 55.000 0.00 0.00 40.61 3.69
160 161 1.672356 TTTCTTGCCTCGCAGCCTC 60.672 57.895 0.00 0.00 40.61 4.70
161 162 1.968540 GTTTCTTGCCTCGCAGCCT 60.969 57.895 0.00 0.00 40.61 4.58
162 163 2.563427 GTTTCTTGCCTCGCAGCC 59.437 61.111 0.00 0.00 40.61 4.85
163 164 2.174349 CGTTTCTTGCCTCGCAGC 59.826 61.111 0.00 0.00 40.61 5.25
164 165 2.863153 CCGTTTCTTGCCTCGCAG 59.137 61.111 0.00 0.00 40.61 5.18
165 166 3.353836 GCCGTTTCTTGCCTCGCA 61.354 61.111 0.00 0.00 36.47 5.10
166 167 4.445545 CGCCGTTTCTTGCCTCGC 62.446 66.667 0.00 0.00 0.00 5.03
167 168 2.730672 CTCGCCGTTTCTTGCCTCG 61.731 63.158 0.00 0.00 0.00 4.63
168 169 2.391389 CCTCGCCGTTTCTTGCCTC 61.391 63.158 0.00 0.00 0.00 4.70
169 170 2.358737 CCTCGCCGTTTCTTGCCT 60.359 61.111 0.00 0.00 0.00 4.75
170 171 4.103103 GCCTCGCCGTTTCTTGCC 62.103 66.667 0.00 0.00 0.00 4.52
171 172 3.314388 CTGCCTCGCCGTTTCTTGC 62.314 63.158 0.00 0.00 0.00 4.01
172 173 0.669318 TACTGCCTCGCCGTTTCTTG 60.669 55.000 0.00 0.00 0.00 3.02
173 174 0.389948 CTACTGCCTCGCCGTTTCTT 60.390 55.000 0.00 0.00 0.00 2.52
174 175 1.215647 CTACTGCCTCGCCGTTTCT 59.784 57.895 0.00 0.00 0.00 2.52
175 176 2.453638 GCTACTGCCTCGCCGTTTC 61.454 63.158 0.00 0.00 0.00 2.78
176 177 2.434359 GCTACTGCCTCGCCGTTT 60.434 61.111 0.00 0.00 0.00 3.60
177 178 4.796231 CGCTACTGCCTCGCCGTT 62.796 66.667 0.00 0.00 35.36 4.44
179 180 4.914420 CTCGCTACTGCCTCGCCG 62.914 72.222 0.00 0.00 35.36 6.46
180 181 3.477224 CTCTCGCTACTGCCTCGCC 62.477 68.421 0.00 0.00 35.36 5.54
181 182 2.025441 CTCTCGCTACTGCCTCGC 59.975 66.667 0.00 0.00 35.36 5.03
182 183 2.025441 GCTCTCGCTACTGCCTCG 59.975 66.667 0.00 0.00 35.36 4.63
183 184 2.415426 GGCTCTCGCTACTGCCTC 59.585 66.667 0.00 0.00 41.92 4.70
184 185 3.522731 CGGCTCTCGCTACTGCCT 61.523 66.667 0.00 0.00 42.90 4.75
185 186 4.577246 CCGGCTCTCGCTACTGCC 62.577 72.222 0.00 0.00 41.76 4.85
187 188 3.826754 TGCCGGCTCTCGCTACTG 61.827 66.667 29.70 0.00 37.59 2.74
188 189 3.827898 GTGCCGGCTCTCGCTACT 61.828 66.667 29.70 0.00 37.59 2.57
189 190 4.874977 GGTGCCGGCTCTCGCTAC 62.875 72.222 29.70 15.38 37.59 3.58
216 217 2.110006 GATCTTGGCTCCTCCCGC 59.890 66.667 0.00 0.00 0.00 6.13
217 218 2.419198 CGATCTTGGCTCCTCCCG 59.581 66.667 0.00 0.00 0.00 5.14
218 219 2.066999 ACCGATCTTGGCTCCTCCC 61.067 63.158 0.00 0.00 0.00 4.30
219 220 1.144936 CACCGATCTTGGCTCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
220 221 1.522580 GCACCGATCTTGGCTCCTC 60.523 63.158 0.00 0.00 0.00 3.71
221 222 2.586792 GCACCGATCTTGGCTCCT 59.413 61.111 0.00 0.00 0.00 3.69
222 223 2.892425 CGCACCGATCTTGGCTCC 60.892 66.667 0.00 0.00 0.00 4.70
223 224 2.167861 GTCGCACCGATCTTGGCTC 61.168 63.158 0.00 0.00 38.42 4.70
224 225 2.125512 GTCGCACCGATCTTGGCT 60.126 61.111 0.00 0.00 38.42 4.75
225 226 3.554692 CGTCGCACCGATCTTGGC 61.555 66.667 0.00 0.00 38.42 4.52
226 227 2.885644 CCGTCGCACCGATCTTGG 60.886 66.667 0.00 0.00 38.42 3.61
227 228 3.554692 GCCGTCGCACCGATCTTG 61.555 66.667 0.00 0.00 38.42 3.02
246 247 3.567797 GATGTCTTCCGCTGCCGC 61.568 66.667 0.00 0.00 0.00 6.53
247 248 2.607668 TACGATGTCTTCCGCTGCCG 62.608 60.000 0.00 0.00 0.00 5.69
248 249 0.459585 TTACGATGTCTTCCGCTGCC 60.460 55.000 0.00 0.00 0.00 4.85
249 250 0.645868 GTTACGATGTCTTCCGCTGC 59.354 55.000 0.00 0.00 0.00 5.25
250 251 1.135083 AGGTTACGATGTCTTCCGCTG 60.135 52.381 0.00 0.00 0.00 5.18
251 252 1.183549 AGGTTACGATGTCTTCCGCT 58.816 50.000 0.00 0.00 0.00 5.52
252 253 2.857592 TAGGTTACGATGTCTTCCGC 57.142 50.000 0.00 0.00 0.00 5.54
253 254 4.561606 CAGTTTAGGTTACGATGTCTTCCG 59.438 45.833 0.00 0.00 0.00 4.30
254 255 5.717119 TCAGTTTAGGTTACGATGTCTTCC 58.283 41.667 0.00 0.00 0.00 3.46
255 256 7.434602 GGTATCAGTTTAGGTTACGATGTCTTC 59.565 40.741 0.00 0.00 0.00 2.87
256 257 7.093640 TGGTATCAGTTTAGGTTACGATGTCTT 60.094 37.037 0.00 0.00 0.00 3.01
257 258 6.379133 TGGTATCAGTTTAGGTTACGATGTCT 59.621 38.462 0.00 0.00 0.00 3.41
258 259 6.567050 TGGTATCAGTTTAGGTTACGATGTC 58.433 40.000 0.00 0.00 0.00 3.06
259 260 6.534475 TGGTATCAGTTTAGGTTACGATGT 57.466 37.500 0.00 0.00 0.00 3.06
260 261 6.984474 ACATGGTATCAGTTTAGGTTACGATG 59.016 38.462 0.00 0.00 36.02 3.84
261 262 7.120923 ACATGGTATCAGTTTAGGTTACGAT 57.879 36.000 0.00 0.00 0.00 3.73
262 263 6.534475 ACATGGTATCAGTTTAGGTTACGA 57.466 37.500 0.00 0.00 0.00 3.43
263 264 8.706492 TTAACATGGTATCAGTTTAGGTTACG 57.294 34.615 0.00 0.00 0.00 3.18
266 267 8.927675 TGTTTAACATGGTATCAGTTTAGGTT 57.072 30.769 0.00 0.00 0.00 3.50
282 283 9.816354 GCAGTTCCCAAATTATATGTTTAACAT 57.184 29.630 15.22 15.22 42.35 2.71
283 284 9.030452 AGCAGTTCCCAAATTATATGTTTAACA 57.970 29.630 0.00 0.00 0.00 2.41
284 285 9.869757 AAGCAGTTCCCAAATTATATGTTTAAC 57.130 29.630 0.00 0.00 0.00 2.01
285 286 9.868277 CAAGCAGTTCCCAAATTATATGTTTAA 57.132 29.630 0.00 0.00 0.00 1.52
286 287 9.249053 TCAAGCAGTTCCCAAATTATATGTTTA 57.751 29.630 0.00 0.00 0.00 2.01
287 288 8.034804 GTCAAGCAGTTCCCAAATTATATGTTT 58.965 33.333 0.00 0.00 0.00 2.83
288 289 7.178274 TGTCAAGCAGTTCCCAAATTATATGTT 59.822 33.333 0.00 0.00 0.00 2.71
289 290 6.663093 TGTCAAGCAGTTCCCAAATTATATGT 59.337 34.615 0.00 0.00 0.00 2.29
290 291 6.974622 GTGTCAAGCAGTTCCCAAATTATATG 59.025 38.462 0.00 0.00 0.00 1.78
291 292 6.096846 GGTGTCAAGCAGTTCCCAAATTATAT 59.903 38.462 0.00 0.00 0.00 0.86
292 293 5.417580 GGTGTCAAGCAGTTCCCAAATTATA 59.582 40.000 0.00 0.00 0.00 0.98
293 294 4.220602 GGTGTCAAGCAGTTCCCAAATTAT 59.779 41.667 0.00 0.00 0.00 1.28
294 295 3.572255 GGTGTCAAGCAGTTCCCAAATTA 59.428 43.478 0.00 0.00 0.00 1.40
295 296 2.365293 GGTGTCAAGCAGTTCCCAAATT 59.635 45.455 0.00 0.00 0.00 1.82
296 297 1.963515 GGTGTCAAGCAGTTCCCAAAT 59.036 47.619 0.00 0.00 0.00 2.32
297 298 1.398692 GGTGTCAAGCAGTTCCCAAA 58.601 50.000 0.00 0.00 0.00 3.28
298 299 0.467290 GGGTGTCAAGCAGTTCCCAA 60.467 55.000 0.00 0.00 35.43 4.12
299 300 1.150536 GGGTGTCAAGCAGTTCCCA 59.849 57.895 0.00 0.00 35.43 4.37
300 301 1.603739 GGGGTGTCAAGCAGTTCCC 60.604 63.158 0.00 0.00 34.68 3.97
301 302 0.690762 TAGGGGTGTCAAGCAGTTCC 59.309 55.000 0.00 0.00 0.00 3.62
302 303 2.152016 GTTAGGGGTGTCAAGCAGTTC 58.848 52.381 0.00 0.00 0.00 3.01
303 304 1.202891 GGTTAGGGGTGTCAAGCAGTT 60.203 52.381 0.00 0.00 0.00 3.16
304 305 0.400594 GGTTAGGGGTGTCAAGCAGT 59.599 55.000 0.00 0.00 0.00 4.40
305 306 0.693049 AGGTTAGGGGTGTCAAGCAG 59.307 55.000 0.00 0.00 0.00 4.24
306 307 0.400213 CAGGTTAGGGGTGTCAAGCA 59.600 55.000 0.00 0.00 0.00 3.91
307 308 0.690762 TCAGGTTAGGGGTGTCAAGC 59.309 55.000 0.00 0.00 0.00 4.01
308 309 1.279271 CCTCAGGTTAGGGGTGTCAAG 59.721 57.143 0.00 0.00 32.55 3.02
309 310 1.358152 CCTCAGGTTAGGGGTGTCAA 58.642 55.000 0.00 0.00 32.55 3.18
310 311 0.192566 ACCTCAGGTTAGGGGTGTCA 59.807 55.000 0.00 0.00 41.32 3.58
311 312 0.613777 CACCTCAGGTTAGGGGTGTC 59.386 60.000 0.00 0.00 42.80 3.67
312 313 2.773458 CACCTCAGGTTAGGGGTGT 58.227 57.895 0.00 0.00 42.80 4.16
315 316 1.991230 CCACACCTCAGGTTAGGGG 59.009 63.158 0.00 0.00 46.35 4.79
316 317 1.201429 AGCCACACCTCAGGTTAGGG 61.201 60.000 12.38 7.07 41.32 3.53
317 318 1.568504 TAGCCACACCTCAGGTTAGG 58.431 55.000 6.93 6.93 42.82 2.69
318 319 3.034635 AGATAGCCACACCTCAGGTTAG 58.965 50.000 0.00 0.00 31.02 2.34
319 320 3.031736 GAGATAGCCACACCTCAGGTTA 58.968 50.000 0.00 0.00 31.02 2.85
320 321 1.834263 GAGATAGCCACACCTCAGGTT 59.166 52.381 0.00 0.00 31.02 3.50
321 322 1.273267 TGAGATAGCCACACCTCAGGT 60.273 52.381 0.00 0.00 35.62 4.00
322 323 1.489481 TGAGATAGCCACACCTCAGG 58.511 55.000 0.00 0.00 32.51 3.86
323 324 3.834489 AATGAGATAGCCACACCTCAG 57.166 47.619 0.00 0.00 38.80 3.35
324 325 8.116026 TCTATATAATGAGATAGCCACACCTCA 58.884 37.037 0.00 0.00 39.60 3.86
325 326 8.526667 TCTATATAATGAGATAGCCACACCTC 57.473 38.462 0.00 0.00 28.58 3.85
326 327 7.563188 CCTCTATATAATGAGATAGCCACACCT 59.437 40.741 6.85 0.00 32.44 4.00
327 328 7.343316 ACCTCTATATAATGAGATAGCCACACC 59.657 40.741 6.85 0.00 32.44 4.16
328 329 8.299990 ACCTCTATATAATGAGATAGCCACAC 57.700 38.462 6.85 0.00 32.44 3.82
331 332 9.815306 GGATACCTCTATATAATGAGATAGCCA 57.185 37.037 8.38 0.00 35.51 4.75
332 333 9.815306 TGGATACCTCTATATAATGAGATAGCC 57.185 37.037 6.94 6.94 35.87 3.93
337 338 9.928618 CCTCTTGGATACCTCTATATAATGAGA 57.071 37.037 6.85 0.00 34.57 3.27
338 339 9.707957 ACCTCTTGGATACCTCTATATAATGAG 57.292 37.037 0.00 0.00 37.04 2.90
345 346 9.750783 GTATTGTACCTCTTGGATACCTCTATA 57.249 37.037 0.00 0.00 37.04 1.31
346 347 8.232412 TGTATTGTACCTCTTGGATACCTCTAT 58.768 37.037 0.00 0.00 37.04 1.98
347 348 7.589081 TGTATTGTACCTCTTGGATACCTCTA 58.411 38.462 0.00 0.00 37.04 2.43
348 349 6.441222 TGTATTGTACCTCTTGGATACCTCT 58.559 40.000 0.00 0.00 37.04 3.69
349 350 6.726490 TGTATTGTACCTCTTGGATACCTC 57.274 41.667 0.00 0.00 37.04 3.85
350 351 7.127339 ACATTGTATTGTACCTCTTGGATACCT 59.873 37.037 0.00 0.00 37.04 3.08
351 352 7.280356 ACATTGTATTGTACCTCTTGGATACC 58.720 38.462 0.00 0.00 37.04 2.73
352 353 8.732746 AACATTGTATTGTACCTCTTGGATAC 57.267 34.615 0.00 0.00 37.04 2.24
353 354 9.826574 GTAACATTGTATTGTACCTCTTGGATA 57.173 33.333 0.00 0.00 37.04 2.59
354 355 8.325787 TGTAACATTGTATTGTACCTCTTGGAT 58.674 33.333 0.00 0.00 37.04 3.41
355 356 7.681679 TGTAACATTGTATTGTACCTCTTGGA 58.318 34.615 0.00 0.00 37.04 3.53
356 357 7.606456 ACTGTAACATTGTATTGTACCTCTTGG 59.394 37.037 0.00 0.00 39.83 3.61
357 358 8.547967 ACTGTAACATTGTATTGTACCTCTTG 57.452 34.615 0.00 0.00 0.00 3.02
358 359 9.649167 GTACTGTAACATTGTATTGTACCTCTT 57.351 33.333 0.00 0.00 0.00 2.85
359 360 8.809066 TGTACTGTAACATTGTATTGTACCTCT 58.191 33.333 14.14 0.00 0.00 3.69
360 361 8.991243 TGTACTGTAACATTGTATTGTACCTC 57.009 34.615 14.14 0.00 0.00 3.85
361 362 8.809066 TCTGTACTGTAACATTGTATTGTACCT 58.191 33.333 14.14 0.00 0.00 3.08
362 363 8.991243 TCTGTACTGTAACATTGTATTGTACC 57.009 34.615 14.14 4.20 0.00 3.34
372 373 9.326413 GCCTTTGTATATCTGTACTGTAACATT 57.674 33.333 0.00 0.00 0.00 2.71
373 374 8.705594 AGCCTTTGTATATCTGTACTGTAACAT 58.294 33.333 0.00 0.00 0.00 2.71
374 375 8.074613 AGCCTTTGTATATCTGTACTGTAACA 57.925 34.615 0.00 0.00 0.00 2.41
375 376 9.460906 GTAGCCTTTGTATATCTGTACTGTAAC 57.539 37.037 0.00 0.00 0.00 2.50
376 377 8.347771 CGTAGCCTTTGTATATCTGTACTGTAA 58.652 37.037 0.00 0.00 0.00 2.41
377 378 7.500227 ACGTAGCCTTTGTATATCTGTACTGTA 59.500 37.037 0.00 0.00 0.00 2.74
378 379 6.320672 ACGTAGCCTTTGTATATCTGTACTGT 59.679 38.462 0.00 0.00 0.00 3.55
379 380 6.736123 ACGTAGCCTTTGTATATCTGTACTG 58.264 40.000 0.00 0.00 0.00 2.74
380 381 6.956202 ACGTAGCCTTTGTATATCTGTACT 57.044 37.500 0.00 0.00 0.00 2.73
391 392 8.782144 GTTAGACTCTATATACGTAGCCTTTGT 58.218 37.037 0.08 0.00 0.00 2.83
392 393 8.781196 TGTTAGACTCTATATACGTAGCCTTTG 58.219 37.037 0.08 0.00 0.00 2.77
393 394 8.915057 TGTTAGACTCTATATACGTAGCCTTT 57.085 34.615 0.08 0.00 0.00 3.11
394 395 9.165035 GATGTTAGACTCTATATACGTAGCCTT 57.835 37.037 0.08 0.00 0.00 4.35
395 396 7.769970 GGATGTTAGACTCTATATACGTAGCCT 59.230 40.741 0.08 0.00 0.00 4.58
396 397 7.551974 TGGATGTTAGACTCTATATACGTAGCC 59.448 40.741 0.08 0.00 0.00 3.93
397 398 8.389603 GTGGATGTTAGACTCTATATACGTAGC 58.610 40.741 0.08 0.00 0.00 3.58
398 399 8.881743 GGTGGATGTTAGACTCTATATACGTAG 58.118 40.741 0.08 0.00 0.00 3.51
399 400 7.547019 CGGTGGATGTTAGACTCTATATACGTA 59.453 40.741 0.00 0.00 0.00 3.57
400 401 6.370994 CGGTGGATGTTAGACTCTATATACGT 59.629 42.308 0.00 0.00 0.00 3.57
401 402 6.675002 GCGGTGGATGTTAGACTCTATATACG 60.675 46.154 0.00 0.00 0.00 3.06
402 403 6.404513 GGCGGTGGATGTTAGACTCTATATAC 60.405 46.154 0.00 0.00 0.00 1.47
403 404 5.651139 GGCGGTGGATGTTAGACTCTATATA 59.349 44.000 0.00 0.00 0.00 0.86
404 405 4.463186 GGCGGTGGATGTTAGACTCTATAT 59.537 45.833 0.00 0.00 0.00 0.86
405 406 3.825014 GGCGGTGGATGTTAGACTCTATA 59.175 47.826 0.00 0.00 0.00 1.31
406 407 2.628657 GGCGGTGGATGTTAGACTCTAT 59.371 50.000 0.00 0.00 0.00 1.98
407 408 2.029623 GGCGGTGGATGTTAGACTCTA 58.970 52.381 0.00 0.00 0.00 2.43
408 409 0.824759 GGCGGTGGATGTTAGACTCT 59.175 55.000 0.00 0.00 0.00 3.24
409 410 0.179081 GGGCGGTGGATGTTAGACTC 60.179 60.000 0.00 0.00 0.00 3.36
410 411 0.907704 TGGGCGGTGGATGTTAGACT 60.908 55.000 0.00 0.00 0.00 3.24
411 412 0.743345 GTGGGCGGTGGATGTTAGAC 60.743 60.000 0.00 0.00 0.00 2.59
412 413 1.600107 GTGGGCGGTGGATGTTAGA 59.400 57.895 0.00 0.00 0.00 2.10
413 414 1.813753 CGTGGGCGGTGGATGTTAG 60.814 63.158 0.00 0.00 0.00 2.34
414 415 2.233605 CTCGTGGGCGGTGGATGTTA 62.234 60.000 0.00 0.00 38.89 2.41
415 416 3.605749 CTCGTGGGCGGTGGATGTT 62.606 63.158 0.00 0.00 38.89 2.71
416 417 4.082523 CTCGTGGGCGGTGGATGT 62.083 66.667 0.00 0.00 38.89 3.06
417 418 2.629050 CTACTCGTGGGCGGTGGATG 62.629 65.000 0.00 0.00 38.89 3.51
418 419 2.363276 TACTCGTGGGCGGTGGAT 60.363 61.111 0.00 0.00 38.89 3.41
419 420 3.066190 CTACTCGTGGGCGGTGGA 61.066 66.667 0.00 0.00 38.89 4.02
420 421 3.064987 CTCTACTCGTGGGCGGTGG 62.065 68.421 0.00 0.00 38.89 4.61
421 422 2.490217 CTCTACTCGTGGGCGGTG 59.510 66.667 0.00 0.00 38.89 4.94
422 423 3.450115 GCTCTACTCGTGGGCGGT 61.450 66.667 0.00 0.00 38.89 5.68
423 424 3.141488 AGCTCTACTCGTGGGCGG 61.141 66.667 0.00 0.00 38.89 6.13
424 425 2.103143 CAGCTCTACTCGTGGGCG 59.897 66.667 0.00 0.00 39.92 6.13
425 426 2.202810 GCAGCTCTACTCGTGGGC 60.203 66.667 0.00 0.00 0.00 5.36
426 427 1.435515 GAGCAGCTCTACTCGTGGG 59.564 63.158 15.78 0.00 0.00 4.61
431 432 1.090625 TCGTCCGAGCAGCTCTACTC 61.091 60.000 20.39 7.17 0.00 2.59
432 433 0.464735 ATCGTCCGAGCAGCTCTACT 60.465 55.000 20.39 1.42 0.00 2.57
433 434 0.382515 AATCGTCCGAGCAGCTCTAC 59.617 55.000 20.39 15.99 0.00 2.59
434 435 1.103803 AAATCGTCCGAGCAGCTCTA 58.896 50.000 20.39 5.55 0.00 2.43
435 436 0.247736 AAAATCGTCCGAGCAGCTCT 59.752 50.000 20.39 0.00 0.00 4.09
436 437 1.079503 AAAAATCGTCCGAGCAGCTC 58.920 50.000 12.94 12.94 0.00 4.09
437 438 3.233355 AAAAATCGTCCGAGCAGCT 57.767 47.368 0.00 0.00 0.00 4.24
950 951 5.399301 CACAAGAAAATCAAAACTAGCACCG 59.601 40.000 0.00 0.00 0.00 4.94
1045 1046 2.030805 GGTACAGCAGCAAACTTCCTTG 60.031 50.000 0.00 0.00 0.00 3.61
1047 1048 1.142870 TGGTACAGCAGCAAACTTCCT 59.857 47.619 0.00 0.00 0.00 3.36
1049 1050 1.946768 TGTGGTACAGCAGCAAACTTC 59.053 47.619 0.00 0.00 41.80 3.01
1051 1052 1.597742 CTGTGGTACAGCAGCAAACT 58.402 50.000 0.00 0.00 41.80 2.66
1137 1148 1.578897 AGGAAGAAAGAGGAGAGGCC 58.421 55.000 0.00 0.00 0.00 5.19
1255 1283 2.914310 AAAACCCTAGCACCGGGGG 61.914 63.158 5.47 8.79 46.40 5.40
1336 1373 0.656259 CAGATGAACTGCAGGCATCG 59.344 55.000 29.89 24.03 42.36 3.84
1342 1379 0.617413 AGTCCCCAGATGAACTGCAG 59.383 55.000 13.48 13.48 44.52 4.41
1490 1527 4.561452 TCTCGAGGGAGATCACGG 57.439 61.111 13.56 0.00 44.28 4.94
1536 1573 3.316283 CAACAAACCCATCACAATTCCG 58.684 45.455 0.00 0.00 0.00 4.30
1538 1575 3.993920 AGCAACAAACCCATCACAATTC 58.006 40.909 0.00 0.00 0.00 2.17
1636 1673 6.921332 ACAAAAAGTAAACAGAACAACACG 57.079 33.333 0.00 0.00 0.00 4.49
1677 1715 2.820059 AGCATTCAGTCGAACACAGA 57.180 45.000 0.00 0.00 32.81 3.41
2229 5606 5.163652 ACAAAAACTAAGCACTCAGTTCCAC 60.164 40.000 0.00 0.00 33.92 4.02
2256 5633 9.289303 CACTCAAAGAATTTATAATTCAACCCG 57.711 33.333 13.00 3.41 35.03 5.28
2323 5700 9.643693 ATGGCTTGATTAAATTGTAAAGTCAAG 57.356 29.630 7.61 7.61 42.24 3.02
2432 5809 6.222038 TCCTAATCTGTTGTAGGCTTGTAG 57.778 41.667 0.00 0.00 37.41 2.74
2433 5810 6.808321 ATCCTAATCTGTTGTAGGCTTGTA 57.192 37.500 0.00 0.00 37.41 2.41
2434 5811 5.700402 ATCCTAATCTGTTGTAGGCTTGT 57.300 39.130 0.00 0.00 37.41 3.16
2435 5812 6.708054 CCTTATCCTAATCTGTTGTAGGCTTG 59.292 42.308 0.00 0.00 37.41 4.01
2436 5813 6.615726 TCCTTATCCTAATCTGTTGTAGGCTT 59.384 38.462 0.00 0.00 37.41 4.35
2437 5814 6.143915 TCCTTATCCTAATCTGTTGTAGGCT 58.856 40.000 0.00 0.00 37.41 4.58
2438 5815 6.420913 TCCTTATCCTAATCTGTTGTAGGC 57.579 41.667 0.00 0.00 37.41 3.93
2597 5974 2.477863 GGCTATGGTGCAAAACTAAGCG 60.478 50.000 0.00 0.00 29.97 4.68
2688 6065 4.819630 ACCACAAAGCGAGACAAAAAGATA 59.180 37.500 0.00 0.00 0.00 1.98
2798 6175 6.804677 TGATTTGTTGTTGCTGAACTGTTAT 58.195 32.000 0.00 0.00 32.79 1.89
2814 6191 5.011943 TGGCAGAATAAAGGCTTGATTTGTT 59.988 36.000 11.17 0.00 0.00 2.83
3050 6427 3.058016 CCAGTGACCTGCAAACTAATGTG 60.058 47.826 0.00 0.00 37.38 3.21
3097 6474 1.821216 TTCCCGCCAAAACAGATCTC 58.179 50.000 0.00 0.00 0.00 2.75
3111 6488 6.460953 CCCACCACTTGATAATATTTTTCCCG 60.461 42.308 0.00 0.00 0.00 5.14
3453 6830 4.963318 TGTTTGCCATATTGTTTGGGAA 57.037 36.364 0.00 0.00 42.06 3.97
3472 6849 1.143684 ACCAAGCAGAGTGTTGGATGT 59.856 47.619 8.08 0.00 45.35 3.06
3546 6923 6.481644 CCCATTTTAGTAAAAGCAGCAAAACA 59.518 34.615 13.25 0.00 33.22 2.83
3620 6997 6.647229 ACATTTGCTGATCATCTACTCTCAA 58.353 36.000 0.00 0.00 0.00 3.02
3716 7093 6.697455 GTCGCTGAAATTGATGTATCTAGACA 59.303 38.462 0.00 0.00 0.00 3.41
3827 7205 8.869897 CGTTTAATGTGCTAGAAAGTTAGATCA 58.130 33.333 0.00 0.00 0.00 2.92
3877 7255 9.007901 AGAAGAAAGGAGTCAATAAATCTTGTG 57.992 33.333 0.00 0.00 0.00 3.33
3878 7256 9.579932 AAGAAGAAAGGAGTCAATAAATCTTGT 57.420 29.630 0.00 0.00 0.00 3.16
3883 7407 8.181904 TGCAAAGAAGAAAGGAGTCAATAAAT 57.818 30.769 0.00 0.00 0.00 1.40
3953 7477 4.494091 ACTAACCTGAACTGGATCCATG 57.506 45.455 16.63 12.01 0.00 3.66
4102 7626 1.500844 CAGCAGTAGCAGCAACAGC 59.499 57.895 0.00 0.00 45.49 4.40
4229 7753 7.927788 AGGCCCATTTAAACTTATTTTTCCAT 58.072 30.769 0.00 0.00 0.00 3.41
4299 7823 8.773033 AATTTGAGGATAGCTTTGATATGGTT 57.227 30.769 0.00 0.00 0.00 3.67
4698 8226 5.842907 ACAGGACAATAGAAAAAGCAAACC 58.157 37.500 0.00 0.00 0.00 3.27
4699 8227 7.114953 GCTAACAGGACAATAGAAAAAGCAAAC 59.885 37.037 0.00 0.00 0.00 2.93
4700 8228 7.145323 GCTAACAGGACAATAGAAAAAGCAAA 58.855 34.615 0.00 0.00 0.00 3.68
4723 8251 8.998377 ACAAACTTTTTGATAAAACAAACTGCT 58.002 25.926 5.67 0.00 39.08 4.24
4788 8316 3.939740 AGGATGTACCAATGTGCAGAT 57.060 42.857 0.00 0.00 40.54 2.90
4792 8320 7.568199 ACTAATTTAGGATGTACCAATGTGC 57.432 36.000 8.26 0.00 42.04 4.57
4828 8356 6.463995 TTGCTGAAAACCAAGTTCAATACT 57.536 33.333 0.00 0.00 39.32 2.12
4836 8364 4.875536 GGAAATGTTTGCTGAAAACCAAGT 59.124 37.500 8.73 0.00 46.47 3.16
4843 8371 6.409524 AAGATGAGGAAATGTTTGCTGAAA 57.590 33.333 4.18 0.00 39.04 2.69
4887 8415 9.981114 CAACCAAATCCAGAAATTAAAACTACT 57.019 29.630 0.00 0.00 0.00 2.57
4892 8420 9.500785 GGAATCAACCAAATCCAGAAATTAAAA 57.499 29.630 0.00 0.00 32.08 1.52
4898 8426 4.750941 AGGGAATCAACCAAATCCAGAAA 58.249 39.130 0.00 0.00 33.48 2.52
4954 8482 5.448360 GCAGCATCCTGAGAACAGATTTTAC 60.448 44.000 0.00 0.00 46.03 2.01
4955 8483 4.637534 GCAGCATCCTGAGAACAGATTTTA 59.362 41.667 0.00 0.00 46.03 1.52
4967 8495 2.275134 TGACTTTTGCAGCATCCTGA 57.725 45.000 0.00 0.00 41.77 3.86
5159 8687 5.102313 GCACAAAGAGCACAGTTTACTTTT 58.898 37.500 0.00 0.00 0.00 2.27
5184 8713 5.703130 AGCCAGAAGACAAAGACATAACTTC 59.297 40.000 0.00 0.00 35.47 3.01
5265 8794 6.433093 AGAACGATAAAAGGCACCAAAAGTAT 59.567 34.615 0.00 0.00 0.00 2.12
5266 8795 5.766174 AGAACGATAAAAGGCACCAAAAGTA 59.234 36.000 0.00 0.00 0.00 2.24
5416 8945 4.849111 CGAGAGCAAAACAGAGATAACC 57.151 45.455 0.00 0.00 0.00 2.85
5513 9042 5.967674 GTCGCATACAGTACATACTACGTTT 59.032 40.000 0.00 0.00 34.13 3.60
5966 9533 0.673644 CCATCAAGAACTTCGCCGGT 60.674 55.000 1.90 0.00 0.00 5.28
6100 9667 2.358003 GCTGGCTCAAGCTGACGT 60.358 61.111 1.46 0.00 40.20 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.