Multiple sequence alignment - TraesCS6A01G242800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G242800 chr6A 100.000 5975 0 0 1 5975 454645220 454651194 0.000000e+00 11034.0
1 TraesCS6A01G242800 chr6A 83.726 934 119 18 1 907 500502982 500502055 0.000000e+00 852.0
2 TraesCS6A01G242800 chr6A 96.512 86 3 0 4368 4453 172113182 172113267 6.240000e-30 143.0
3 TraesCS6A01G242800 chr6A 95.402 87 4 0 4368 4454 158080479 158080393 8.070000e-29 139.0
4 TraesCS6A01G242800 chr6D 95.177 1555 42 8 4451 5975 317007353 317008904 0.000000e+00 2425.0
5 TraesCS6A01G242800 chr6D 91.588 1272 56 21 3140 4370 317006094 317007355 0.000000e+00 1709.0
6 TraesCS6A01G242800 chr6D 94.118 646 32 4 2197 2837 317004989 317005633 0.000000e+00 977.0
7 TraesCS6A01G242800 chr6D 91.014 690 49 5 1496 2182 317004238 317004917 0.000000e+00 918.0
8 TraesCS6A01G242800 chr6D 80.000 260 31 6 5049 5288 191904272 191904014 7.960000e-39 172.0
9 TraesCS6A01G242800 chr6D 97.647 85 2 0 4368 4452 30077451 30077367 4.830000e-31 147.0
10 TraesCS6A01G242800 chr6D 94.186 86 5 0 4368 4453 44846396 44846311 1.350000e-26 132.0
11 TraesCS6A01G242800 chr6D 94.186 86 5 0 4367 4452 99730290 99730205 1.350000e-26 132.0
12 TraesCS6A01G242800 chr6D 94.118 85 5 0 4368 4452 170947554 170947638 4.860000e-26 130.0
13 TraesCS6A01G242800 chr6D 94.118 85 5 0 4368 4452 393661997 393661913 4.860000e-26 130.0
14 TraesCS6A01G242800 chr6D 94.203 69 4 0 3072 3140 317005748 317005816 8.190000e-19 106.0
15 TraesCS6A01G242800 chr6D 84.000 75 5 2 925 992 317003557 317003631 1.390000e-06 65.8
16 TraesCS6A01G242800 chr6B 94.723 1554 42 16 4451 5975 507592145 507590603 0.000000e+00 2379.0
17 TraesCS6A01G242800 chr6B 90.839 1037 46 10 3140 4135 507593504 507592476 0.000000e+00 1343.0
18 TraesCS6A01G242800 chr6B 90.570 912 58 15 1274 2182 507595561 507594675 0.000000e+00 1182.0
19 TraesCS6A01G242800 chr6B 94.847 621 31 1 2201 2821 507594599 507593980 0.000000e+00 968.0
20 TraesCS6A01G242800 chr6B 93.103 232 10 3 4141 4370 507592370 507592143 9.600000e-88 335.0
21 TraesCS6A01G242800 chr6B 96.471 85 3 0 4368 4452 320551034 320551118 2.250000e-29 141.0
22 TraesCS6A01G242800 chr6B 89.524 105 10 1 4362 4465 305497642 305497746 1.350000e-26 132.0
23 TraesCS6A01G242800 chr4D 87.460 949 76 13 1 907 25983936 25984883 0.000000e+00 1053.0
24 TraesCS6A01G242800 chr4D 94.253 87 5 0 4368 4454 188711910 188711824 3.760000e-27 134.0
25 TraesCS6A01G242800 chr4D 94.186 86 5 0 4368 4453 498898046 498897961 1.350000e-26 132.0
26 TraesCS6A01G242800 chr4D 81.319 91 17 0 4876 4966 233096786 233096696 2.310000e-09 75.0
27 TraesCS6A01G242800 chr5D 88.751 889 60 8 60 910 503734970 503735856 0.000000e+00 1051.0
28 TraesCS6A01G242800 chr5D 84.245 603 84 10 312 909 179856159 179855563 1.440000e-160 577.0
29 TraesCS6A01G242800 chr5D 84.245 603 84 9 312 909 430292839 430292243 1.440000e-160 577.0
30 TraesCS6A01G242800 chr5D 84.140 599 85 8 316 909 541754881 541755474 6.720000e-159 571.0
31 TraesCS6A01G242800 chr5D 85.794 359 45 6 3533 3888 505215988 505216343 5.650000e-100 375.0
32 TraesCS6A01G242800 chr5D 87.324 142 18 0 3176 3317 505215640 505215781 4.790000e-36 163.0
33 TraesCS6A01G242800 chr5D 95.294 85 4 0 4368 4452 57225963 57226047 1.040000e-27 135.0
34 TraesCS6A01G242800 chr5D 95.294 85 4 0 4368 4452 361646134 361646218 1.040000e-27 135.0
35 TraesCS6A01G242800 chr5D 79.365 126 23 2 2642 2764 44137469 44137344 1.070000e-12 86.1
36 TraesCS6A01G242800 chr2D 88.301 889 63 9 60 910 641012864 641011979 0.000000e+00 1027.0
37 TraesCS6A01G242800 chr2D 90.426 752 43 7 60 784 646026034 646026783 0.000000e+00 963.0
38 TraesCS6A01G242800 chr2D 84.577 603 80 10 312 909 131668134 131668728 2.400000e-163 586.0
39 TraesCS6A01G242800 chr2D 84.245 603 84 9 312 909 164461528 164462124 1.440000e-160 577.0
40 TraesCS6A01G242800 chr2D 95.349 86 4 0 4368 4453 82187156 82187241 2.900000e-28 137.0
41 TraesCS6A01G242800 chr2D 95.294 85 4 0 4368 4452 58514009 58513925 1.040000e-27 135.0
42 TraesCS6A01G242800 chr2D 90.526 95 9 0 4367 4461 603885751 603885845 6.290000e-25 126.0
43 TraesCS6A01G242800 chr4A 86.892 946 87 10 1 910 56720186 56719242 0.000000e+00 1026.0
44 TraesCS6A01G242800 chr4A 78.846 260 35 8 5049 5288 263739155 263738896 2.230000e-34 158.0
45 TraesCS6A01G242800 chr4A 95.455 88 4 0 4366 4453 16246034 16245947 2.250000e-29 141.0
46 TraesCS6A01G242800 chr4A 81.319 91 17 0 4876 4966 363103946 363103856 2.310000e-09 75.0
47 TraesCS6A01G242800 chr2B 83.510 946 114 14 1 907 363744359 363745301 0.000000e+00 845.0
48 TraesCS6A01G242800 chr3A 82.806 948 118 20 1 911 617066446 617067385 0.000000e+00 806.0
49 TraesCS6A01G242800 chr3A 91.525 118 7 2 3211 3328 105112921 105112807 6.200000e-35 159.0
50 TraesCS6A01G242800 chr3A 78.605 215 33 11 2565 2773 105113609 105113402 4.860000e-26 130.0
51 TraesCS6A01G242800 chr2A 90.184 489 46 2 1 487 728561798 728561310 2.350000e-178 636.0
52 TraesCS6A01G242800 chr2A 92.523 107 8 0 2965 3071 39407508 39407402 2.880000e-33 154.0
53 TraesCS6A01G242800 chr2A 92.523 107 8 0 2965 3071 745015538 745015432 2.880000e-33 154.0
54 TraesCS6A01G242800 chr2A 91.818 110 8 1 2955 3064 646728384 646728276 1.040000e-32 152.0
55 TraesCS6A01G242800 chr2A 90.991 111 10 0 2961 3071 102329263 102329373 3.730000e-32 150.0
56 TraesCS6A01G242800 chr1D 85.067 596 79 8 319 909 425118359 425118949 3.080000e-167 599.0
57 TraesCS6A01G242800 chr1D 85.258 563 71 9 312 870 81564634 81565188 2.420000e-158 569.0
58 TraesCS6A01G242800 chr1D 83.914 603 86 9 312 909 437233025 437233621 3.130000e-157 566.0
59 TraesCS6A01G242800 chr1D 83.967 605 80 12 312 909 347454276 347453682 1.120000e-156 564.0
60 TraesCS6A01G242800 chr1D 86.247 429 49 7 3513 3933 307832791 307832365 1.960000e-124 457.0
61 TraesCS6A01G242800 chr1D 79.227 414 66 9 2408 2802 307833593 307833181 2.740000e-68 270.0
62 TraesCS6A01G242800 chr1D 77.090 323 70 4 2481 2801 127503831 127504151 3.680000e-42 183.0
63 TraesCS6A01G242800 chr1D 85.799 169 21 2 3180 3348 307833100 307832935 6.150000e-40 176.0
64 TraesCS6A01G242800 chr1D 94.318 88 5 0 4366 4453 387899590 387899503 1.040000e-27 135.0
65 TraesCS6A01G242800 chr1D 94.253 87 5 0 4368 4454 453544826 453544912 3.760000e-27 134.0
66 TraesCS6A01G242800 chr1D 94.186 86 5 0 4368 4453 365209385 365209470 1.350000e-26 132.0
67 TraesCS6A01G242800 chr1D 93.258 89 5 1 4363 4451 10816149 10816236 4.860000e-26 130.0
68 TraesCS6A01G242800 chr1D 93.103 87 6 0 4367 4453 279946340 279946254 1.750000e-25 128.0
69 TraesCS6A01G242800 chr1D 93.103 87 6 0 4367 4453 286930008 286929922 1.750000e-25 128.0
70 TraesCS6A01G242800 chr1D 92.941 85 6 0 4368 4452 18464929 18465013 2.260000e-24 124.0
71 TraesCS6A01G242800 chr1D 93.023 86 4 1 4368 4453 470889452 470889369 2.260000e-24 124.0
72 TraesCS6A01G242800 chr1B 86.713 429 47 7 3513 3933 416822586 416822160 9.070000e-128 468.0
73 TraesCS6A01G242800 chr1B 84.810 237 34 2 2567 2802 416823217 416822982 2.780000e-58 237.0
74 TraesCS6A01G242800 chr1B 81.538 260 28 5 5049 5288 100146176 100145917 4.720000e-46 196.0
75 TraesCS6A01G242800 chr1B 76.780 323 71 4 2481 2801 246453962 246454282 1.710000e-40 178.0
76 TraesCS6A01G242800 chr1B 89.130 138 15 0 3180 3317 416822898 416822761 7.960000e-39 172.0
77 TraesCS6A01G242800 chr1B 96.552 87 3 0 4368 4454 623974956 623975042 1.740000e-30 145.0
78 TraesCS6A01G242800 chr1B 77.966 236 32 12 5046 5281 381314995 381315210 4.860000e-26 130.0
79 TraesCS6A01G242800 chr1B 94.118 85 5 0 4368 4452 497661677 497661593 4.860000e-26 130.0
80 TraesCS6A01G242800 chr1B 79.646 113 16 6 2642 2749 343954521 343954631 2.310000e-09 75.0
81 TraesCS6A01G242800 chr1A 85.781 429 51 7 3513 3933 387029217 387028791 4.250000e-121 446.0
82 TraesCS6A01G242800 chr1A 78.986 414 67 9 2408 2802 387030014 387029602 1.280000e-66 265.0
83 TraesCS6A01G242800 chr1A 77.500 320 68 4 2484 2801 186212305 186212622 7.910000e-44 189.0
84 TraesCS6A01G242800 chr1A 92.593 108 8 0 2965 3072 148610333 148610440 8.020000e-34 156.0
85 TraesCS6A01G242800 chr1A 95.349 86 4 0 4368 4453 551437933 551438018 2.900000e-28 137.0
86 TraesCS6A01G242800 chr1A 94.286 35 2 0 3239 3273 506541564 506541598 3.000000e-03 54.7
87 TraesCS6A01G242800 chr5B 85.754 358 47 4 3533 3888 635194924 635195279 5.650000e-100 375.0
88 TraesCS6A01G242800 chr5B 89.051 137 15 0 3181 3317 635194581 635194717 2.860000e-38 171.0
89 TraesCS6A01G242800 chr5B 94.253 87 5 0 4368 4454 602263971 602263885 3.760000e-27 134.0
90 TraesCS6A01G242800 chr5B 91.489 94 6 2 4359 4450 291383914 291383821 1.750000e-25 128.0
91 TraesCS6A01G242800 chr5A 84.637 358 51 4 3533 3888 632836833 632837188 2.650000e-93 353.0
92 TraesCS6A01G242800 chr5A 88.321 137 16 0 3181 3317 632836475 632836611 1.330000e-36 165.0
93 TraesCS6A01G242800 chr5A 91.071 112 10 0 2961 3072 299272898 299273009 1.040000e-32 152.0
94 TraesCS6A01G242800 chr5A 78.481 158 27 6 2612 2764 34262773 34262928 4.930000e-16 97.1
95 TraesCS6A01G242800 chr3D 86.093 151 18 2 3178 3328 88352213 88352360 6.200000e-35 159.0
96 TraesCS6A01G242800 chr3D 87.903 124 11 4 2949 3071 30238936 30239056 6.240000e-30 143.0
97 TraesCS6A01G242800 chr3D 96.512 86 3 0 4368 4453 311644868 311644953 6.240000e-30 143.0
98 TraesCS6A01G242800 chr3D 95.402 87 4 0 4366 4452 71371522 71371436 8.070000e-29 139.0
99 TraesCS6A01G242800 chr7D 92.523 107 8 0 2965 3071 30960182 30960288 2.880000e-33 154.0
100 TraesCS6A01G242800 chr7D 97.727 88 2 0 4366 4453 599718439 599718526 1.040000e-32 152.0
101 TraesCS6A01G242800 chr7D 97.647 85 2 0 4368 4452 129800362 129800278 4.830000e-31 147.0
102 TraesCS6A01G242800 chr7D 87.059 85 11 0 5832 5916 418728950 418729034 4.930000e-16 97.1
103 TraesCS6A01G242800 chr7A 92.523 107 8 0 2965 3071 697132988 697132882 2.880000e-33 154.0
104 TraesCS6A01G242800 chr7A 78.599 257 34 6 5049 5284 276741939 276741683 3.730000e-32 150.0
105 TraesCS6A01G242800 chr7A 96.552 87 3 0 4367 4453 138960828 138960742 1.740000e-30 145.0
106 TraesCS6A01G242800 chr3B 80.095 211 30 10 2565 2769 137750028 137750232 4.830000e-31 147.0
107 TraesCS6A01G242800 chr3B 93.684 95 5 1 4366 4459 291626841 291626935 2.250000e-29 141.0
108 TraesCS6A01G242800 chr3B 89.412 85 9 0 5832 5916 316755121 316755205 2.280000e-19 108.0
109 TraesCS6A01G242800 chr3B 85.882 85 12 0 5832 5916 595997128 595997212 2.290000e-14 91.6
110 TraesCS6A01G242800 chr7B 96.471 85 3 0 4368 4452 8925182 8925266 2.250000e-29 141.0
111 TraesCS6A01G242800 chr7B 96.471 85 3 0 4368 4452 9704740 9704824 2.250000e-29 141.0
112 TraesCS6A01G242800 chr4B 94.253 87 5 0 4368 4454 86084451 86084365 3.760000e-27 134.0
113 TraesCS6A01G242800 chr4B 81.319 91 17 0 4876 4966 232108182 232108092 2.310000e-09 75.0
114 TraesCS6A01G242800 chrUn 92.941 85 6 0 4368 4452 47471788 47471704 2.260000e-24 124.0
115 TraesCS6A01G242800 chrUn 88.660 97 9 2 4359 4454 89989661 89989756 3.780000e-22 117.0
116 TraesCS6A01G242800 chrUn 90.588 85 7 1 4368 4452 286308706 286308789 1.760000e-20 111.0
117 TraesCS6A01G242800 chrUn 90.588 85 7 1 4368 4452 286314989 286315072 1.760000e-20 111.0
118 TraesCS6A01G242800 chrUn 90.588 85 7 1 4368 4452 295781566 295781483 1.760000e-20 111.0
119 TraesCS6A01G242800 chrUn 88.235 85 10 0 4368 4452 28955436 28955520 1.060000e-17 102.0
120 TraesCS6A01G242800 chrUn 88.235 85 10 0 4368 4452 301349942 301350026 1.060000e-17 102.0
121 TraesCS6A01G242800 chrUn 88.235 85 10 0 4368 4452 348118293 348118209 1.060000e-17 102.0
122 TraesCS6A01G242800 chrUn 86.747 83 10 1 4370 4452 320256179 320256098 2.290000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G242800 chr6A 454645220 454651194 5974 False 11034.000000 11034 100.000000 1 5975 1 chr6A.!!$F2 5974
1 TraesCS6A01G242800 chr6A 500502055 500502982 927 True 852.000000 852 83.726000 1 907 1 chr6A.!!$R2 906
2 TraesCS6A01G242800 chr6D 317003557 317008904 5347 False 1033.466667 2425 91.683333 925 5975 6 chr6D.!!$F2 5050
3 TraesCS6A01G242800 chr6B 507590603 507595561 4958 True 1241.400000 2379 92.816400 1274 5975 5 chr6B.!!$R1 4701
4 TraesCS6A01G242800 chr4D 25983936 25984883 947 False 1053.000000 1053 87.460000 1 907 1 chr4D.!!$F1 906
5 TraesCS6A01G242800 chr5D 503734970 503735856 886 False 1051.000000 1051 88.751000 60 910 1 chr5D.!!$F3 850
6 TraesCS6A01G242800 chr5D 179855563 179856159 596 True 577.000000 577 84.245000 312 909 1 chr5D.!!$R2 597
7 TraesCS6A01G242800 chr5D 430292243 430292839 596 True 577.000000 577 84.245000 312 909 1 chr5D.!!$R3 597
8 TraesCS6A01G242800 chr5D 541754881 541755474 593 False 571.000000 571 84.140000 316 909 1 chr5D.!!$F4 593
9 TraesCS6A01G242800 chr5D 505215640 505216343 703 False 269.000000 375 86.559000 3176 3888 2 chr5D.!!$F5 712
10 TraesCS6A01G242800 chr2D 641011979 641012864 885 True 1027.000000 1027 88.301000 60 910 1 chr2D.!!$R2 850
11 TraesCS6A01G242800 chr2D 646026034 646026783 749 False 963.000000 963 90.426000 60 784 1 chr2D.!!$F5 724
12 TraesCS6A01G242800 chr2D 131668134 131668728 594 False 586.000000 586 84.577000 312 909 1 chr2D.!!$F2 597
13 TraesCS6A01G242800 chr2D 164461528 164462124 596 False 577.000000 577 84.245000 312 909 1 chr2D.!!$F3 597
14 TraesCS6A01G242800 chr4A 56719242 56720186 944 True 1026.000000 1026 86.892000 1 910 1 chr4A.!!$R2 909
15 TraesCS6A01G242800 chr2B 363744359 363745301 942 False 845.000000 845 83.510000 1 907 1 chr2B.!!$F1 906
16 TraesCS6A01G242800 chr3A 617066446 617067385 939 False 806.000000 806 82.806000 1 911 1 chr3A.!!$F1 910
17 TraesCS6A01G242800 chr1D 425118359 425118949 590 False 599.000000 599 85.067000 319 909 1 chr1D.!!$F6 590
18 TraesCS6A01G242800 chr1D 81564634 81565188 554 False 569.000000 569 85.258000 312 870 1 chr1D.!!$F3 558
19 TraesCS6A01G242800 chr1D 437233025 437233621 596 False 566.000000 566 83.914000 312 909 1 chr1D.!!$F7 597
20 TraesCS6A01G242800 chr1D 347453682 347454276 594 True 564.000000 564 83.967000 312 909 1 chr1D.!!$R3 597
21 TraesCS6A01G242800 chr1D 307832365 307833593 1228 True 301.000000 457 83.757667 2408 3933 3 chr1D.!!$R6 1525
22 TraesCS6A01G242800 chr1B 416822160 416823217 1057 True 292.333333 468 86.884333 2567 3933 3 chr1B.!!$R3 1366
23 TraesCS6A01G242800 chr1A 387028791 387030014 1223 True 355.500000 446 82.383500 2408 3933 2 chr1A.!!$R1 1525
24 TraesCS6A01G242800 chr5B 635194581 635195279 698 False 273.000000 375 87.402500 3181 3888 2 chr5B.!!$F1 707
25 TraesCS6A01G242800 chr5A 632836475 632837188 713 False 259.000000 353 86.479000 3181 3888 2 chr5A.!!$F3 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 968 0.107848 TTGGCCTTAGCTCTAACGCC 60.108 55.000 17.24 17.24 43.17 5.68 F
1196 1474 0.109723 TCCCGTTCTTGTTTCTGGGG 59.890 55.000 0.00 0.00 37.25 4.96 F
1205 1483 0.110486 TGTTTCTGGGGGAAGCTGTC 59.890 55.000 0.00 0.00 36.36 3.51 F
3174 3873 0.179215 GATTAGTGCGTGTGCTGTGC 60.179 55.000 0.00 0.00 43.34 4.57 F
3867 4658 1.075659 AAGCAGCACCCCTTCTTCC 59.924 57.895 0.00 0.00 0.00 3.46 F
4198 5127 0.900182 AGGTCAGGTGCATCGACAGA 60.900 55.000 18.92 3.04 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2350 0.251341 ACATTGGGTTCCAGGTCTGC 60.251 55.000 0.0 0.0 33.81 4.26 R
3173 3872 0.174162 CAGCATAAAACCTGCCCAGC 59.826 55.000 0.0 0.0 40.56 4.85 R
3206 3905 3.276857 CATGTGCAAATACTCCAGAGCT 58.723 45.455 0.0 0.0 0.00 4.09 R
4099 4926 0.107017 CTGCCCTGGTTCCCATAGTG 60.107 60.000 0.0 0.0 30.82 2.74 R
4818 5748 1.105759 GCTCCAAGACCATCCCATGC 61.106 60.000 0.0 0.0 0.00 4.06 R
5041 5976 1.269448 GAAAGCCGTCCAAAGAATGCA 59.731 47.619 0.0 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.716195 CCATGGACTGGTCGGGCA 61.716 66.667 5.56 0.00 40.49 5.36
62 63 2.436646 CATGGACTGGTCGGGCAC 60.437 66.667 0.00 0.00 0.00 5.01
63 64 2.927856 ATGGACTGGTCGGGCACA 60.928 61.111 0.00 0.00 0.00 4.57
64 65 2.959484 ATGGACTGGTCGGGCACAG 61.959 63.158 0.00 0.00 40.48 3.66
138 141 4.508128 CCGCCGGCAGATACACGT 62.508 66.667 28.98 0.00 0.00 4.49
231 234 0.250295 CTGCCCAAAGAAGGTCGTGA 60.250 55.000 0.00 0.00 0.00 4.35
262 265 1.969064 CAACGCCGGAACATCCCAA 60.969 57.895 5.05 0.00 31.13 4.12
266 269 1.029408 CGCCGGAACATCCCAAATGA 61.029 55.000 5.05 0.00 31.13 2.57
272 275 3.255642 CGGAACATCCCAAATGAGTGTTT 59.744 43.478 0.00 0.00 33.55 2.83
315 318 4.096532 GGGTATGTGCTCTTTTTAGCTTCC 59.903 45.833 0.00 0.00 43.19 3.46
330 334 1.727335 GCTTCCGTTTGTGCTCTAGAC 59.273 52.381 0.00 0.00 0.00 2.59
379 383 9.941325 AATTTTATTGTGTAGAATGGATGCAAA 57.059 25.926 0.00 0.00 0.00 3.68
534 563 7.540299 CAACCTCTACTTCTTTAGACTCGAAT 58.460 38.462 0.00 0.00 0.00 3.34
594 626 5.625921 TCAACAATGAATGCATCGAGAAA 57.374 34.783 0.00 0.00 32.35 2.52
598 630 5.957798 ACAATGAATGCATCGAGAAAACAT 58.042 33.333 0.00 0.00 32.35 2.71
713 747 8.311109 AGTTAAAATTTGGTGATGTATTCCCAC 58.689 33.333 0.00 0.00 0.00 4.61
875 924 7.094975 ACGGATAGAATTCGATCAAAACAAACA 60.095 33.333 24.33 0.00 30.86 2.83
911 960 0.321653 CGGTGAAGTTGGCCTTAGCT 60.322 55.000 3.32 0.00 39.73 3.32
912 961 1.454201 GGTGAAGTTGGCCTTAGCTC 58.546 55.000 3.32 0.00 39.73 4.09
913 962 1.003696 GGTGAAGTTGGCCTTAGCTCT 59.996 52.381 3.32 0.00 39.73 4.09
914 963 2.236395 GGTGAAGTTGGCCTTAGCTCTA 59.764 50.000 3.32 0.00 39.73 2.43
915 964 3.307480 GGTGAAGTTGGCCTTAGCTCTAA 60.307 47.826 3.32 0.00 39.73 2.10
916 965 3.685272 GTGAAGTTGGCCTTAGCTCTAAC 59.315 47.826 3.32 0.00 39.73 2.34
917 966 2.674796 AGTTGGCCTTAGCTCTAACG 57.325 50.000 3.32 0.00 39.73 3.18
918 967 1.007580 GTTGGCCTTAGCTCTAACGC 58.992 55.000 3.32 3.17 39.73 4.84
919 968 0.107848 TTGGCCTTAGCTCTAACGCC 60.108 55.000 17.24 17.24 43.17 5.68
920 969 1.591863 GGCCTTAGCTCTAACGCCG 60.592 63.158 11.83 0.00 37.44 6.46
921 970 2.238437 GCCTTAGCTCTAACGCCGC 61.238 63.158 0.00 0.00 35.50 6.53
922 971 1.591863 CCTTAGCTCTAACGCCGCC 60.592 63.158 0.00 0.00 0.00 6.13
923 972 1.141019 CTTAGCTCTAACGCCGCCA 59.859 57.895 0.00 0.00 0.00 5.69
924 973 0.459585 CTTAGCTCTAACGCCGCCAA 60.460 55.000 0.00 0.00 0.00 4.52
925 974 0.738412 TTAGCTCTAACGCCGCCAAC 60.738 55.000 0.00 0.00 0.00 3.77
926 975 1.879737 TAGCTCTAACGCCGCCAACA 61.880 55.000 0.00 0.00 0.00 3.33
957 1006 3.164028 GCAGTTGCAGTTTTCCGTC 57.836 52.632 0.00 0.00 41.59 4.79
958 1007 0.317854 GCAGTTGCAGTTTTCCGTCC 60.318 55.000 0.00 0.00 41.59 4.79
959 1008 1.021202 CAGTTGCAGTTTTCCGTCCA 58.979 50.000 0.00 0.00 0.00 4.02
964 1020 1.403679 TGCAGTTTTCCGTCCAACTTG 59.596 47.619 0.00 0.00 30.48 3.16
992 1048 3.319972 GTCCACCCTTTACAGTTTTTCCC 59.680 47.826 0.00 0.00 0.00 3.97
993 1049 3.205733 TCCACCCTTTACAGTTTTTCCCT 59.794 43.478 0.00 0.00 0.00 4.20
994 1050 3.964688 CCACCCTTTACAGTTTTTCCCTT 59.035 43.478 0.00 0.00 0.00 3.95
995 1051 4.038763 CCACCCTTTACAGTTTTTCCCTTC 59.961 45.833 0.00 0.00 0.00 3.46
996 1052 4.038763 CACCCTTTACAGTTTTTCCCTTCC 59.961 45.833 0.00 0.00 0.00 3.46
997 1053 3.576982 CCCTTTACAGTTTTTCCCTTCCC 59.423 47.826 0.00 0.00 0.00 3.97
998 1054 3.576982 CCTTTACAGTTTTTCCCTTCCCC 59.423 47.826 0.00 0.00 0.00 4.81
999 1055 2.572209 TACAGTTTTTCCCTTCCCCG 57.428 50.000 0.00 0.00 0.00 5.73
1000 1056 0.826256 ACAGTTTTTCCCTTCCCCGC 60.826 55.000 0.00 0.00 0.00 6.13
1001 1057 0.539669 CAGTTTTTCCCTTCCCCGCT 60.540 55.000 0.00 0.00 0.00 5.52
1003 1059 0.601558 GTTTTTCCCTTCCCCGCTTC 59.398 55.000 0.00 0.00 0.00 3.86
1019 1075 2.852431 CTTCGGTCTCCTCGCGTCAC 62.852 65.000 5.77 0.00 0.00 3.67
1021 1077 4.477975 GGTCTCCTCGCGTCACGG 62.478 72.222 5.77 2.93 43.89 4.94
1022 1078 4.477975 GTCTCCTCGCGTCACGGG 62.478 72.222 8.18 8.18 44.02 5.28
1035 1091 3.991051 ACGGGAGTGCGTGGTCTG 61.991 66.667 0.00 0.00 44.82 3.51
1036 1092 3.680786 CGGGAGTGCGTGGTCTGA 61.681 66.667 0.00 0.00 0.00 3.27
1037 1093 2.262915 GGGAGTGCGTGGTCTGAG 59.737 66.667 0.00 0.00 0.00 3.35
1038 1094 2.574955 GGGAGTGCGTGGTCTGAGT 61.575 63.158 0.00 0.00 0.00 3.41
1040 1096 0.601558 GGAGTGCGTGGTCTGAGTAA 59.398 55.000 0.00 0.00 0.00 2.24
1041 1097 1.402984 GGAGTGCGTGGTCTGAGTAAG 60.403 57.143 0.00 0.00 0.00 2.34
1042 1098 1.540267 GAGTGCGTGGTCTGAGTAAGA 59.460 52.381 0.00 0.00 0.00 2.10
1048 1104 3.760537 CGTGGTCTGAGTAAGAAGCTAC 58.239 50.000 0.00 0.00 36.40 3.58
1050 1106 4.082679 CGTGGTCTGAGTAAGAAGCTACTT 60.083 45.833 0.00 0.00 36.40 2.24
1071 1339 1.733402 CTCGGGACTAGCAGCAGAGG 61.733 65.000 0.00 0.00 0.00 3.69
1093 1361 1.901464 GCGGGGAGAGCCAAACAAA 60.901 57.895 0.00 0.00 35.15 2.83
1138 1412 8.408601 CCTGGATCTCCATTTTAGTTGTTTATG 58.591 37.037 0.00 0.00 46.46 1.90
1139 1413 8.292444 TGGATCTCCATTTTAGTTGTTTATGG 57.708 34.615 0.00 0.00 42.01 2.74
1140 1414 7.893302 TGGATCTCCATTTTAGTTGTTTATGGT 59.107 33.333 0.00 0.00 42.01 3.55
1141 1415 8.190784 GGATCTCCATTTTAGTTGTTTATGGTG 58.809 37.037 0.00 0.00 37.58 4.17
1142 1416 8.650143 ATCTCCATTTTAGTTGTTTATGGTGT 57.350 30.769 0.00 0.00 37.58 4.16
1144 1418 6.987386 TCCATTTTAGTTGTTTATGGTGTGG 58.013 36.000 0.00 0.00 37.58 4.17
1151 1429 3.603965 TGTTTATGGTGTGGTTTCCCT 57.396 42.857 0.00 0.00 0.00 4.20
1153 1431 3.139397 TGTTTATGGTGTGGTTTCCCTCT 59.861 43.478 0.00 0.00 0.00 3.69
1157 1435 2.661718 TGGTGTGGTTTCCCTCTTTTC 58.338 47.619 0.00 0.00 0.00 2.29
1184 1462 1.274167 TGGTCTGTATGTGTCCCGTTC 59.726 52.381 0.00 0.00 0.00 3.95
1185 1463 1.549170 GGTCTGTATGTGTCCCGTTCT 59.451 52.381 0.00 0.00 0.00 3.01
1187 1465 2.993899 GTCTGTATGTGTCCCGTTCTTG 59.006 50.000 0.00 0.00 0.00 3.02
1189 1467 3.070446 TCTGTATGTGTCCCGTTCTTGTT 59.930 43.478 0.00 0.00 0.00 2.83
1190 1468 3.811083 TGTATGTGTCCCGTTCTTGTTT 58.189 40.909 0.00 0.00 0.00 2.83
1191 1469 3.810941 TGTATGTGTCCCGTTCTTGTTTC 59.189 43.478 0.00 0.00 0.00 2.78
1194 1472 1.602377 GTGTCCCGTTCTTGTTTCTGG 59.398 52.381 0.00 0.00 0.00 3.86
1195 1473 1.235724 GTCCCGTTCTTGTTTCTGGG 58.764 55.000 0.00 0.00 38.02 4.45
1196 1474 0.109723 TCCCGTTCTTGTTTCTGGGG 59.890 55.000 0.00 0.00 37.25 4.96
1197 1475 0.893727 CCCGTTCTTGTTTCTGGGGG 60.894 60.000 0.00 0.00 32.85 5.40
1198 1476 0.109723 CCGTTCTTGTTTCTGGGGGA 59.890 55.000 0.00 0.00 0.00 4.81
1199 1477 1.477923 CCGTTCTTGTTTCTGGGGGAA 60.478 52.381 0.00 0.00 0.00 3.97
1200 1478 1.880027 CGTTCTTGTTTCTGGGGGAAG 59.120 52.381 0.00 0.00 35.16 3.46
1201 1479 1.613925 GTTCTTGTTTCTGGGGGAAGC 59.386 52.381 0.00 0.00 35.16 3.86
1202 1480 1.149101 TCTTGTTTCTGGGGGAAGCT 58.851 50.000 0.00 0.00 36.36 3.74
1203 1481 1.202927 TCTTGTTTCTGGGGGAAGCTG 60.203 52.381 0.00 0.00 36.36 4.24
1204 1482 0.555769 TTGTTTCTGGGGGAAGCTGT 59.444 50.000 0.00 0.00 36.36 4.40
1205 1483 0.110486 TGTTTCTGGGGGAAGCTGTC 59.890 55.000 0.00 0.00 36.36 3.51
1206 1484 0.110486 GTTTCTGGGGGAAGCTGTCA 59.890 55.000 0.00 0.00 35.16 3.58
1207 1485 1.075601 TTTCTGGGGGAAGCTGTCAT 58.924 50.000 0.00 0.00 35.16 3.06
1208 1486 1.075601 TTCTGGGGGAAGCTGTCATT 58.924 50.000 0.00 0.00 0.00 2.57
1209 1487 1.075601 TCTGGGGGAAGCTGTCATTT 58.924 50.000 0.00 0.00 0.00 2.32
1210 1488 1.428912 TCTGGGGGAAGCTGTCATTTT 59.571 47.619 0.00 0.00 0.00 1.82
1211 1489 2.647299 TCTGGGGGAAGCTGTCATTTTA 59.353 45.455 0.00 0.00 0.00 1.52
1212 1490 3.019564 CTGGGGGAAGCTGTCATTTTAG 58.980 50.000 0.00 0.00 0.00 1.85
1213 1491 1.751351 GGGGGAAGCTGTCATTTTAGC 59.249 52.381 0.00 0.00 40.18 3.09
1245 1523 2.493278 CTGGTTTCTTTGCTATGTGGGG 59.507 50.000 0.00 0.00 0.00 4.96
1261 1539 4.812814 GGAAATGTCCCAATGCGC 57.187 55.556 0.00 0.00 38.08 6.09
1262 1540 1.141665 GGAAATGTCCCAATGCGCC 59.858 57.895 4.18 0.00 38.08 6.53
1265 1543 0.975887 AAATGTCCCAATGCGCCTTT 59.024 45.000 4.18 0.00 0.00 3.11
1266 1544 0.247185 AATGTCCCAATGCGCCTTTG 59.753 50.000 4.18 9.18 0.00 2.77
1267 1545 0.899717 ATGTCCCAATGCGCCTTTGT 60.900 50.000 4.18 0.00 0.00 2.83
1268 1546 1.112315 TGTCCCAATGCGCCTTTGTT 61.112 50.000 4.18 0.00 0.00 2.83
1270 1548 0.316841 TCCCAATGCGCCTTTGTTTC 59.683 50.000 4.18 0.00 0.00 2.78
1271 1549 1.008361 CCCAATGCGCCTTTGTTTCG 61.008 55.000 4.18 0.00 0.00 3.46
1279 1564 0.383949 GCCTTTGTTTCGCTGGTCAA 59.616 50.000 0.00 0.00 0.00 3.18
1283 1568 3.735746 CCTTTGTTTCGCTGGTCAAAATC 59.264 43.478 0.00 0.00 31.07 2.17
1310 1595 1.757423 TTGCTTGCTTTGGGGAAGGC 61.757 55.000 0.00 0.00 42.52 4.35
1337 1622 3.359950 GGATGCTCAGGGTTGAAGAAAT 58.640 45.455 0.00 0.00 31.69 2.17
1343 1628 4.202253 GCTCAGGGTTGAAGAAATTTGGTT 60.202 41.667 0.00 0.00 31.69 3.67
1344 1629 5.684813 GCTCAGGGTTGAAGAAATTTGGTTT 60.685 40.000 0.00 0.00 31.69 3.27
1345 1630 5.912892 TCAGGGTTGAAGAAATTTGGTTTC 58.087 37.500 0.00 0.00 45.31 2.78
1363 1648 5.425539 TGGTTTCTAATTTGGTGGTTTTGGA 59.574 36.000 0.00 0.00 0.00 3.53
1391 1676 4.763793 ACTCCTCAACAAATTCATGTCCAG 59.236 41.667 0.00 0.00 31.81 3.86
1414 1699 1.815840 GCGCACTAAGCCTCTTCCC 60.816 63.158 0.30 0.00 41.38 3.97
1438 1723 3.324846 TGTGTTTATCTGCAGAGTGGAGT 59.675 43.478 22.96 6.52 37.12 3.85
1439 1724 3.681897 GTGTTTATCTGCAGAGTGGAGTG 59.318 47.826 22.96 0.00 37.12 3.51
1440 1725 3.578282 TGTTTATCTGCAGAGTGGAGTGA 59.422 43.478 22.96 0.00 37.12 3.41
1442 1727 5.181748 GTTTATCTGCAGAGTGGAGTGATT 58.818 41.667 22.96 3.39 37.12 2.57
1468 1756 3.830192 CGGGCTCCTGCATTTGCC 61.830 66.667 13.50 13.50 44.22 4.52
1473 1761 0.969409 GCTCCTGCATTTGCCCTCTT 60.969 55.000 0.00 0.00 41.18 2.85
1479 1767 1.252904 GCATTTGCCCTCTTGCTGGA 61.253 55.000 0.00 0.00 34.31 3.86
1480 1768 0.815734 CATTTGCCCTCTTGCTGGAG 59.184 55.000 0.00 0.00 0.00 3.86
1481 1769 0.969409 ATTTGCCCTCTTGCTGGAGC 60.969 55.000 0.00 0.00 42.50 4.70
1482 1770 2.072874 TTTGCCCTCTTGCTGGAGCT 62.073 55.000 0.00 0.00 42.66 4.09
1483 1771 2.438075 GCCCTCTTGCTGGAGCTG 60.438 66.667 0.00 0.00 42.66 4.24
1486 1774 2.600729 CCTCTTGCTGGAGCTGGGT 61.601 63.158 0.00 0.00 42.66 4.51
1576 1864 1.825474 TCCGTTTGGTGCCAAGAAAAA 59.175 42.857 3.72 0.00 37.24 1.94
1589 1877 6.352516 TGCCAAGAAAAATAGAAGGCAAAAA 58.647 32.000 0.00 0.00 46.55 1.94
1630 1918 5.613358 ATCCTGTCGATTGTTTGAAGAAC 57.387 39.130 0.00 0.00 0.00 3.01
1655 1943 3.599343 CTCATTTGGTGGACAGAATCGA 58.401 45.455 0.00 0.00 0.00 3.59
1668 1956 2.365095 GAATCGACCAGGGGCTACCG 62.365 65.000 0.00 0.00 46.96 4.02
1672 1960 3.462199 GACCAGGGGCTACCGCATC 62.462 68.421 3.35 0.00 46.96 3.91
1715 2003 0.240945 GTGGTTGACAAGATTGCCGG 59.759 55.000 0.00 0.00 0.00 6.13
1760 2048 0.249447 GCCCGGCAGCCAAATAATTC 60.249 55.000 13.30 0.00 0.00 2.17
1812 2100 3.995809 TAGGGAAGGGGAGGGCACG 62.996 68.421 0.00 0.00 0.00 5.34
1843 2131 3.644399 GAGAAGGACCCGTCGGCAC 62.644 68.421 5.50 1.33 0.00 5.01
1886 2174 4.587189 GGGCGAGGAATCGTCGGG 62.587 72.222 23.74 1.02 41.21 5.14
1938 2226 2.190578 CACCCTCCGGAGCCAATC 59.809 66.667 26.87 0.00 0.00 2.67
1948 2236 1.233019 GGAGCCAATCGATGTGGATG 58.767 55.000 22.80 8.51 38.54 3.51
2049 2337 1.950484 GCACCGTCCATGGAAGACATT 60.950 52.381 27.02 7.16 37.84 2.71
2050 2338 2.436417 CACCGTCCATGGAAGACATTT 58.564 47.619 27.02 4.84 37.84 2.32
2064 2352 0.608856 ACATTTCTGTCCATGCCGCA 60.609 50.000 0.00 0.00 0.00 5.69
2067 2355 0.955428 TTTCTGTCCATGCCGCAGAC 60.955 55.000 10.32 2.41 38.76 3.51
2068 2356 2.803155 TTCTGTCCATGCCGCAGACC 62.803 60.000 9.57 0.00 38.76 3.85
2071 2359 4.100084 TCCATGCCGCAGACCTGG 62.100 66.667 4.58 4.58 0.00 4.45
2073 2361 2.046023 CATGCCGCAGACCTGGAA 60.046 61.111 0.00 0.00 0.00 3.53
2167 2458 1.213013 CCCTCAACTCAGTCGTCGG 59.787 63.158 0.00 0.00 0.00 4.79
2168 2459 1.241990 CCCTCAACTCAGTCGTCGGA 61.242 60.000 0.00 0.00 0.00 4.55
2182 2473 1.076995 TCGGAGGAGAAGGATCGCA 60.077 57.895 0.00 0.00 0.00 5.10
2183 2474 1.066587 CGGAGGAGAAGGATCGCAC 59.933 63.158 0.00 0.00 0.00 5.34
2184 2475 1.443828 GGAGGAGAAGGATCGCACC 59.556 63.158 0.00 0.00 0.00 5.01
2185 2476 1.066587 GAGGAGAAGGATCGCACCG 59.933 63.158 0.00 0.00 34.73 4.94
2342 2693 1.576356 GAGAGCATAAAGACCAGCGG 58.424 55.000 0.00 0.00 0.00 5.52
2691 3060 2.357034 ACCCTGTACGCGCACTTG 60.357 61.111 11.36 3.71 0.00 3.16
2825 3194 6.373005 AATCATCCATGTTCCGGTATATCA 57.627 37.500 0.00 0.00 0.00 2.15
2827 3196 4.838423 TCATCCATGTTCCGGTATATCAGT 59.162 41.667 0.00 0.00 0.00 3.41
2830 3199 5.364778 TCCATGTTCCGGTATATCAGTTTG 58.635 41.667 0.00 0.00 0.00 2.93
2832 3201 6.098552 TCCATGTTCCGGTATATCAGTTTGTA 59.901 38.462 0.00 0.00 0.00 2.41
2834 3203 7.444183 CCATGTTCCGGTATATCAGTTTGTATT 59.556 37.037 0.00 0.00 0.00 1.89
2868 3237 7.307573 GGTGAAATGAAAATGCTTTTCTTCCTG 60.308 37.037 16.84 0.00 47.00 3.86
2869 3238 6.707161 TGAAATGAAAATGCTTTTCTTCCTGG 59.293 34.615 16.84 0.00 47.00 4.45
2881 3250 6.531594 GCTTTTCTTCCTGGTTATGTTTATGC 59.468 38.462 0.00 0.00 0.00 3.14
2972 3364 8.803235 AGTTTTGAAAATAATAACACTCCCTCC 58.197 33.333 0.00 0.00 0.00 4.30
2973 3365 6.995511 TTGAAAATAATAACACTCCCTCCG 57.004 37.500 0.00 0.00 0.00 4.63
2974 3366 6.057321 TGAAAATAATAACACTCCCTCCGT 57.943 37.500 0.00 0.00 0.00 4.69
2975 3367 6.478129 TGAAAATAATAACACTCCCTCCGTT 58.522 36.000 0.00 0.00 0.00 4.44
2976 3368 6.596497 TGAAAATAATAACACTCCCTCCGTTC 59.404 38.462 0.00 0.00 0.00 3.95
2977 3369 5.687166 AATAATAACACTCCCTCCGTTCA 57.313 39.130 0.00 0.00 0.00 3.18
2978 3370 3.329929 AATAACACTCCCTCCGTTCAC 57.670 47.619 0.00 0.00 0.00 3.18
2979 3371 2.005370 TAACACTCCCTCCGTTCACT 57.995 50.000 0.00 0.00 0.00 3.41
2980 3372 1.129058 AACACTCCCTCCGTTCACTT 58.871 50.000 0.00 0.00 0.00 3.16
2981 3373 1.129058 ACACTCCCTCCGTTCACTTT 58.871 50.000 0.00 0.00 0.00 2.66
2982 3374 1.489230 ACACTCCCTCCGTTCACTTTT 59.511 47.619 0.00 0.00 0.00 2.27
2983 3375 1.873591 CACTCCCTCCGTTCACTTTTG 59.126 52.381 0.00 0.00 0.00 2.44
2984 3376 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
2985 3377 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
2986 3378 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
2987 3379 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
2988 3380 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
2989 3381 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
2990 3382 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
2991 3383 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
2992 3384 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
2993 3385 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
2994 3386 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
2995 3387 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
2996 3388 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
2997 3389 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
2998 3390 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
2999 3391 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
3000 3392 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
3001 3393 7.065324 TCACTTTTGTAAGTCGTTTCAGACAAT 59.935 33.333 0.00 0.00 42.67 2.71
3002 3394 7.696453 CACTTTTGTAAGTCGTTTCAGACAATT 59.304 33.333 0.00 0.00 42.67 2.32
3003 3395 8.241367 ACTTTTGTAAGTCGTTTCAGACAATTT 58.759 29.630 0.00 0.00 40.60 1.82
3004 3396 9.710979 CTTTTGTAAGTCGTTTCAGACAATTTA 57.289 29.630 0.00 0.00 43.24 1.40
3077 3469 4.940046 AGTGAACAGATGAAGTATGGCTTG 59.060 41.667 0.00 0.00 37.59 4.01
3145 3844 7.987458 AGAAACAGAAGTTCAGTACAGATGAAA 59.013 33.333 5.50 0.00 38.34 2.69
3158 3857 4.005650 ACAGATGAAATGCTGACGTGATT 58.994 39.130 0.00 0.00 36.07 2.57
3172 3871 1.148310 GTGATTAGTGCGTGTGCTGT 58.852 50.000 0.00 0.00 43.34 4.40
3173 3872 1.136252 GTGATTAGTGCGTGTGCTGTG 60.136 52.381 0.00 0.00 43.34 3.66
3174 3873 0.179215 GATTAGTGCGTGTGCTGTGC 60.179 55.000 0.00 0.00 43.34 4.57
3200 3899 1.557832 AGGTTTTATGCTGCGGAGGTA 59.442 47.619 5.93 0.00 0.00 3.08
3590 4378 2.989824 ACGCACGAGTACCTGGCT 60.990 61.111 0.00 0.00 0.00 4.75
3867 4658 1.075659 AAGCAGCACCCCTTCTTCC 59.924 57.895 0.00 0.00 0.00 3.46
4069 4896 1.086634 GGCTCTGATTCGACCAGTGC 61.087 60.000 22.61 22.61 45.25 4.40
4154 5081 8.803235 CATAGTATACTGGTATAACTGAGCCAA 58.197 37.037 15.90 0.00 30.60 4.52
4162 5089 5.822519 TGGTATAACTGAGCCAATGAATCAC 59.177 40.000 0.00 0.00 0.00 3.06
4198 5127 0.900182 AGGTCAGGTGCATCGACAGA 60.900 55.000 18.92 3.04 0.00 3.41
4219 5148 5.990386 CAGACACTGGATGATCTTATTCCTG 59.010 44.000 0.00 2.66 35.34 3.86
4229 5158 5.863965 TGATCTTATTCCTGTCACAACACA 58.136 37.500 0.00 0.00 0.00 3.72
4236 5165 1.676006 CCTGTCACAACACACCCTTTC 59.324 52.381 0.00 0.00 0.00 2.62
4244 5173 3.181454 ACAACACACCCTTTCTAGACTGG 60.181 47.826 0.00 0.00 0.00 4.00
4370 5299 5.245531 CCCACACATCATTTACACACTACT 58.754 41.667 0.00 0.00 0.00 2.57
4371 5300 5.351465 CCCACACATCATTTACACACTACTC 59.649 44.000 0.00 0.00 0.00 2.59
4372 5301 5.351465 CCACACATCATTTACACACTACTCC 59.649 44.000 0.00 0.00 0.00 3.85
4373 5302 5.351465 CACACATCATTTACACACTACTCCC 59.649 44.000 0.00 0.00 0.00 4.30
4374 5303 5.248477 ACACATCATTTACACACTACTCCCT 59.752 40.000 0.00 0.00 0.00 4.20
4375 5304 5.812642 CACATCATTTACACACTACTCCCTC 59.187 44.000 0.00 0.00 0.00 4.30
4376 5305 5.721960 ACATCATTTACACACTACTCCCTCT 59.278 40.000 0.00 0.00 0.00 3.69
4377 5306 5.661056 TCATTTACACACTACTCCCTCTG 57.339 43.478 0.00 0.00 0.00 3.35
4378 5307 5.084519 TCATTTACACACTACTCCCTCTGT 58.915 41.667 0.00 0.00 0.00 3.41
4379 5308 6.250711 TCATTTACACACTACTCCCTCTGTA 58.749 40.000 0.00 0.00 0.00 2.74
4380 5309 6.722590 TCATTTACACACTACTCCCTCTGTAA 59.277 38.462 0.00 0.00 0.00 2.41
4381 5310 6.982160 TTTACACACTACTCCCTCTGTAAA 57.018 37.500 0.00 0.00 33.71 2.01
4382 5311 4.868314 ACACACTACTCCCTCTGTAAAC 57.132 45.455 0.00 0.00 0.00 2.01
4383 5312 4.481072 ACACACTACTCCCTCTGTAAACT 58.519 43.478 0.00 0.00 0.00 2.66
4384 5313 5.638133 ACACACTACTCCCTCTGTAAACTA 58.362 41.667 0.00 0.00 0.00 2.24
4385 5314 6.073314 ACACACTACTCCCTCTGTAAACTAA 58.927 40.000 0.00 0.00 0.00 2.24
4386 5315 6.015603 ACACACTACTCCCTCTGTAAACTAAC 60.016 42.308 0.00 0.00 0.00 2.34
4387 5316 6.015688 CACACTACTCCCTCTGTAAACTAACA 60.016 42.308 0.00 0.00 0.00 2.41
4388 5317 6.724905 ACACTACTCCCTCTGTAAACTAACAT 59.275 38.462 0.00 0.00 0.00 2.71
4389 5318 7.892241 ACACTACTCCCTCTGTAAACTAACATA 59.108 37.037 0.00 0.00 0.00 2.29
4390 5319 8.746530 CACTACTCCCTCTGTAAACTAACATAA 58.253 37.037 0.00 0.00 0.00 1.90
4391 5320 8.968969 ACTACTCCCTCTGTAAACTAACATAAG 58.031 37.037 0.00 0.00 0.00 1.73
4392 5321 9.186837 CTACTCCCTCTGTAAACTAACATAAGA 57.813 37.037 0.00 0.00 0.00 2.10
4393 5322 8.068892 ACTCCCTCTGTAAACTAACATAAGAG 57.931 38.462 0.00 0.00 0.00 2.85
4394 5323 6.875076 TCCCTCTGTAAACTAACATAAGAGC 58.125 40.000 0.00 0.00 0.00 4.09
4395 5324 6.439375 TCCCTCTGTAAACTAACATAAGAGCA 59.561 38.462 0.00 0.00 0.00 4.26
4396 5325 7.125811 TCCCTCTGTAAACTAACATAAGAGCAT 59.874 37.037 0.00 0.00 0.00 3.79
4397 5326 7.770897 CCCTCTGTAAACTAACATAAGAGCATT 59.229 37.037 0.00 0.00 0.00 3.56
4398 5327 9.167311 CCTCTGTAAACTAACATAAGAGCATTT 57.833 33.333 0.00 0.00 0.00 2.32
4448 5377 9.670442 ACACTCTTATATTAGTTTATGGAGGGA 57.330 33.333 0.00 0.00 0.00 4.20
4450 5379 9.900112 ACTCTTATATTAGTTTATGGAGGGAGT 57.100 33.333 0.00 0.00 0.00 3.85
4469 5398 8.333226 AGGGAGTACAGGTTAAGCTAAATAAT 57.667 34.615 6.90 0.03 0.00 1.28
4707 5637 6.877322 GCCCTGAGTTTACAACACTCTAATAA 59.123 38.462 2.00 0.00 41.25 1.40
4708 5638 7.553044 GCCCTGAGTTTACAACACTCTAATAAT 59.447 37.037 2.00 0.00 41.25 1.28
4741 5671 3.703052 GAGGGAAAATGATGCCAGAATGT 59.297 43.478 0.00 0.00 32.31 2.71
4757 5687 5.513094 CCAGAATGTCTCTTTACCAGTTCCA 60.513 44.000 0.00 0.00 29.07 3.53
4818 5748 2.089980 CTGCAGACCCTTTTCCAGATG 58.910 52.381 8.42 0.00 0.00 2.90
5041 5976 8.546083 AGAGATCACATCAGATACTTACCTTT 57.454 34.615 0.00 0.00 0.00 3.11
5097 6032 3.557903 ATTCTGCGCCACCACTGCT 62.558 57.895 4.18 0.00 0.00 4.24
5221 6158 6.049149 CCAACACTCTTGTTCAGTTTAGAGA 58.951 40.000 0.00 0.00 44.57 3.10
5245 6182 9.078990 AGAATCATCAGTACGATAAAGATACCA 57.921 33.333 0.00 0.00 31.20 3.25
5670 6633 4.071961 TCTCTAGCAACAAGACAAGCAA 57.928 40.909 0.00 0.00 0.00 3.91
5684 6647 6.552445 AGACAAGCAAGGTTAGTATCTCAT 57.448 37.500 0.00 0.00 0.00 2.90
5715 6678 4.733165 ACTATACCACAGCCCGATAACTA 58.267 43.478 0.00 0.00 0.00 2.24
5777 6740 6.863275 TGAGAGTACTTATGAATCTTCGCAA 58.137 36.000 0.00 0.00 0.00 4.85
5812 6775 7.116519 CCACACACTAAGTAAGAGTTAAGCTTC 59.883 40.741 0.00 0.00 0.00 3.86
5889 6852 0.531974 ACAACGTCCAACATCAGCGT 60.532 50.000 0.00 0.00 37.38 5.07
5950 6913 1.198637 GTCATCAGCCAGTGTTGCTTC 59.801 52.381 0.00 0.00 36.81 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 234 2.430244 CGTTGTAGACACGCGGCT 60.430 61.111 12.47 7.39 0.00 5.52
262 265 7.803189 CGTTTAAGCACTTGATAAACACTCATT 59.197 33.333 13.79 0.00 38.71 2.57
266 269 6.854496 TCGTTTAAGCACTTGATAAACACT 57.146 33.333 13.79 0.00 38.71 3.55
272 275 4.196193 CCCCATCGTTTAAGCACTTGATA 58.804 43.478 0.00 0.00 0.00 2.15
315 318 3.643763 AGTCAAGTCTAGAGCACAAACG 58.356 45.455 0.00 0.00 0.00 3.60
379 383 7.466804 TGTACTCTTCTTCCCAATACCAAAAT 58.533 34.615 0.00 0.00 0.00 1.82
534 563 3.367932 CGATCTTGCGTGCTTCTTTCTTA 59.632 43.478 0.00 0.00 0.00 2.10
594 626 8.275040 ACTGCTCCTATAAGTTGGATTAATGTT 58.725 33.333 0.00 0.00 0.00 2.71
598 630 9.778741 CATAACTGCTCCTATAAGTTGGATTAA 57.221 33.333 0.00 0.00 35.77 1.40
652 684 7.322664 AGAGCAAAGAAAACAAGAATCACAAA 58.677 30.769 0.00 0.00 0.00 2.83
658 690 9.875691 AAAAGTAAGAGCAAAGAAAACAAGAAT 57.124 25.926 0.00 0.00 0.00 2.40
690 722 6.434652 ACGTGGGAATACATCACCAAATTTTA 59.565 34.615 0.00 0.00 32.38 1.52
762 800 1.512926 GACGCATCCTATCCGCATTT 58.487 50.000 0.00 0.00 0.00 2.32
763 801 0.320771 GGACGCATCCTATCCGCATT 60.321 55.000 0.00 0.00 42.45 3.56
826 875 5.862678 TTGGATAGGACAATGTGATCGTA 57.137 39.130 0.00 0.00 0.00 3.43
831 880 3.262151 TCCGTTTGGATAGGACAATGTGA 59.738 43.478 0.00 0.00 40.17 3.58
833 882 3.992943 TCCGTTTGGATAGGACAATGT 57.007 42.857 0.00 0.00 40.17 2.71
864 913 9.638239 GCAATCCTAAATAGATGTTTGTTTTGA 57.362 29.630 0.00 0.00 0.00 2.69
875 924 3.067106 CACCGCGCAATCCTAAATAGAT 58.933 45.455 8.75 0.00 0.00 1.98
911 960 0.739462 CATCTGTTGGCGGCGTTAGA 60.739 55.000 9.37 7.90 0.00 2.10
912 961 1.705337 CCATCTGTTGGCGGCGTTAG 61.705 60.000 9.37 1.95 39.09 2.34
913 962 1.743623 CCATCTGTTGGCGGCGTTA 60.744 57.895 9.37 0.00 39.09 3.18
914 963 3.055719 CCATCTGTTGGCGGCGTT 61.056 61.111 9.37 0.00 39.09 4.84
915 964 3.958147 CTCCATCTGTTGGCGGCGT 62.958 63.158 9.37 0.00 46.01 5.68
916 965 3.197790 CTCCATCTGTTGGCGGCG 61.198 66.667 0.51 0.51 46.01 6.46
917 966 2.045926 ACTCCATCTGTTGGCGGC 60.046 61.111 0.00 0.00 46.01 6.53
918 967 0.107508 ATCACTCCATCTGTTGGCGG 60.108 55.000 0.00 0.00 46.01 6.13
919 968 1.399440 CAATCACTCCATCTGTTGGCG 59.601 52.381 0.00 0.00 46.01 5.69
920 969 1.133790 GCAATCACTCCATCTGTTGGC 59.866 52.381 0.00 0.00 46.01 4.52
922 971 3.079578 ACTGCAATCACTCCATCTGTTG 58.920 45.455 0.00 0.00 0.00 3.33
923 972 3.430042 ACTGCAATCACTCCATCTGTT 57.570 42.857 0.00 0.00 0.00 3.16
924 973 3.079578 CAACTGCAATCACTCCATCTGT 58.920 45.455 0.00 0.00 0.00 3.41
925 974 2.159421 GCAACTGCAATCACTCCATCTG 60.159 50.000 0.00 0.00 41.59 2.90
926 975 2.089980 GCAACTGCAATCACTCCATCT 58.910 47.619 0.00 0.00 41.59 2.90
968 1024 1.601166 AAACTGTAAAGGGTGGACGC 58.399 50.000 0.00 0.00 0.00 5.19
981 1037 0.826256 GCGGGGAAGGGAAAAACTGT 60.826 55.000 0.00 0.00 0.00 3.55
999 1055 4.117661 ACGCGAGGAGACCGAAGC 62.118 66.667 15.93 0.00 0.00 3.86
1000 1056 2.100603 GACGCGAGGAGACCGAAG 59.899 66.667 15.93 0.00 0.00 3.79
1001 1057 2.670592 TGACGCGAGGAGACCGAA 60.671 61.111 15.93 0.00 0.00 4.30
1003 1059 4.813526 CGTGACGCGAGGAGACCG 62.814 72.222 15.93 0.54 44.77 4.79
1005 1061 4.477975 CCCGTGACGCGAGGAGAC 62.478 72.222 15.93 0.00 44.77 3.36
1019 1075 3.633094 CTCAGACCACGCACTCCCG 62.633 68.421 0.00 0.00 0.00 5.14
1021 1077 0.601558 TTACTCAGACCACGCACTCC 59.398 55.000 0.00 0.00 0.00 3.85
1022 1078 1.540267 TCTTACTCAGACCACGCACTC 59.460 52.381 0.00 0.00 0.00 3.51
1026 1082 1.067495 AGCTTCTTACTCAGACCACGC 60.067 52.381 0.00 0.00 0.00 5.34
1027 1083 3.440872 AGTAGCTTCTTACTCAGACCACG 59.559 47.826 0.00 0.00 0.00 4.94
1028 1084 5.394224 AAGTAGCTTCTTACTCAGACCAC 57.606 43.478 3.44 0.00 32.84 4.16
1029 1085 6.512342 GTAAGTAGCTTCTTACTCAGACCA 57.488 41.667 26.98 0.18 43.47 4.02
1037 1093 4.639755 AGTCCCGAGTAAGTAGCTTCTTAC 59.360 45.833 26.99 26.99 45.68 2.34
1038 1094 4.853007 AGTCCCGAGTAAGTAGCTTCTTA 58.147 43.478 8.59 8.59 0.00 2.10
1040 1096 3.369242 AGTCCCGAGTAAGTAGCTTCT 57.631 47.619 0.00 0.00 0.00 2.85
1041 1097 3.003585 GCTAGTCCCGAGTAAGTAGCTTC 59.996 52.174 0.00 0.00 40.00 3.86
1042 1098 2.950975 GCTAGTCCCGAGTAAGTAGCTT 59.049 50.000 0.00 0.00 40.00 3.74
1048 1104 1.066303 CTGCTGCTAGTCCCGAGTAAG 59.934 57.143 0.00 0.00 0.00 2.34
1050 1106 0.255033 TCTGCTGCTAGTCCCGAGTA 59.745 55.000 0.00 0.00 0.00 2.59
1093 1361 2.358737 CGGCTTGAGCTCGGGTTT 60.359 61.111 9.64 0.00 41.70 3.27
1144 1418 1.711375 AGGAGGGGAAAAGAGGGAAAC 59.289 52.381 0.00 0.00 0.00 2.78
1151 1429 1.362224 CAGACCAGGAGGGGAAAAGA 58.638 55.000 0.00 0.00 42.91 2.52
1153 1431 2.426431 TACAGACCAGGAGGGGAAAA 57.574 50.000 0.00 0.00 42.91 2.29
1157 1435 0.833287 CACATACAGACCAGGAGGGG 59.167 60.000 0.00 0.00 42.91 4.79
1184 1462 1.251251 CAGCTTCCCCCAGAAACAAG 58.749 55.000 0.00 0.00 32.88 3.16
1185 1463 0.555769 ACAGCTTCCCCCAGAAACAA 59.444 50.000 0.00 0.00 32.88 2.83
1187 1465 0.110486 TGACAGCTTCCCCCAGAAAC 59.890 55.000 0.00 0.00 32.88 2.78
1189 1467 1.075601 AATGACAGCTTCCCCCAGAA 58.924 50.000 0.00 0.00 0.00 3.02
1190 1468 1.075601 AAATGACAGCTTCCCCCAGA 58.924 50.000 0.00 0.00 0.00 3.86
1191 1469 1.928868 AAAATGACAGCTTCCCCCAG 58.071 50.000 0.00 0.00 0.00 4.45
1194 1472 2.728007 AGCTAAAATGACAGCTTCCCC 58.272 47.619 0.00 0.00 45.80 4.81
1195 1473 6.456795 AAATAGCTAAAATGACAGCTTCCC 57.543 37.500 0.00 0.00 45.80 3.97
1196 1474 7.645735 GCTAAAATAGCTAAAATGACAGCTTCC 59.354 37.037 0.00 0.00 45.80 3.46
1197 1475 8.553817 GCTAAAATAGCTAAAATGACAGCTTC 57.446 34.615 0.00 0.00 45.80 3.86
1213 1491 7.150783 AGCAAAGAAACCAGAGCTAAAATAG 57.849 36.000 0.00 0.00 0.00 1.73
1214 1492 8.677300 CATAGCAAAGAAACCAGAGCTAAAATA 58.323 33.333 0.00 0.00 38.00 1.40
1215 1493 7.177392 ACATAGCAAAGAAACCAGAGCTAAAAT 59.823 33.333 0.00 0.00 38.00 1.82
1216 1494 6.490040 ACATAGCAAAGAAACCAGAGCTAAAA 59.510 34.615 0.00 0.00 38.00 1.52
1217 1495 6.003950 ACATAGCAAAGAAACCAGAGCTAAA 58.996 36.000 0.00 0.00 38.00 1.85
1218 1496 5.412594 CACATAGCAAAGAAACCAGAGCTAA 59.587 40.000 0.00 0.00 38.00 3.09
1219 1497 4.937620 CACATAGCAAAGAAACCAGAGCTA 59.062 41.667 0.00 0.00 38.72 3.32
1220 1498 3.755378 CACATAGCAAAGAAACCAGAGCT 59.245 43.478 0.00 0.00 36.20 4.09
1221 1499 3.119708 CCACATAGCAAAGAAACCAGAGC 60.120 47.826 0.00 0.00 0.00 4.09
1222 1500 3.441572 CCCACATAGCAAAGAAACCAGAG 59.558 47.826 0.00 0.00 0.00 3.35
1223 1501 3.420893 CCCACATAGCAAAGAAACCAGA 58.579 45.455 0.00 0.00 0.00 3.86
1224 1502 2.493278 CCCCACATAGCAAAGAAACCAG 59.507 50.000 0.00 0.00 0.00 4.00
1225 1503 2.109128 TCCCCACATAGCAAAGAAACCA 59.891 45.455 0.00 0.00 0.00 3.67
1226 1504 2.802719 TCCCCACATAGCAAAGAAACC 58.197 47.619 0.00 0.00 0.00 3.27
1227 1505 4.864704 TTTCCCCACATAGCAAAGAAAC 57.135 40.909 0.00 0.00 0.00 2.78
1228 1506 4.837860 ACATTTCCCCACATAGCAAAGAAA 59.162 37.500 0.00 0.00 0.00 2.52
1229 1507 4.415596 ACATTTCCCCACATAGCAAAGAA 58.584 39.130 0.00 0.00 0.00 2.52
1230 1508 4.016444 GACATTTCCCCACATAGCAAAGA 58.984 43.478 0.00 0.00 0.00 2.52
1231 1509 3.131046 GGACATTTCCCCACATAGCAAAG 59.869 47.826 0.00 0.00 35.57 2.77
1232 1510 3.096092 GGACATTTCCCCACATAGCAAA 58.904 45.455 0.00 0.00 35.57 3.68
1233 1511 2.733956 GGACATTTCCCCACATAGCAA 58.266 47.619 0.00 0.00 35.57 3.91
1234 1512 2.435372 GGACATTTCCCCACATAGCA 57.565 50.000 0.00 0.00 35.57 3.49
1245 1523 0.532115 AAGGCGCATTGGGACATTTC 59.468 50.000 6.46 0.00 39.30 2.17
1260 1538 0.383949 TTGACCAGCGAAACAAAGGC 59.616 50.000 0.00 0.00 0.00 4.35
1261 1539 2.861462 TTTGACCAGCGAAACAAAGG 57.139 45.000 0.00 0.00 0.00 3.11
1262 1540 4.442073 CAGATTTTGACCAGCGAAACAAAG 59.558 41.667 0.00 0.00 32.81 2.77
1265 1543 2.293122 CCAGATTTTGACCAGCGAAACA 59.707 45.455 0.00 0.00 32.81 2.83
1266 1544 2.351738 CCCAGATTTTGACCAGCGAAAC 60.352 50.000 0.00 0.00 32.81 2.78
1267 1545 1.885887 CCCAGATTTTGACCAGCGAAA 59.114 47.619 0.00 0.00 34.47 3.46
1268 1546 1.202879 ACCCAGATTTTGACCAGCGAA 60.203 47.619 0.00 0.00 0.00 4.70
1270 1548 1.200020 GAACCCAGATTTTGACCAGCG 59.800 52.381 0.00 0.00 0.00 5.18
1271 1549 2.519013 AGAACCCAGATTTTGACCAGC 58.481 47.619 0.00 0.00 0.00 4.85
1272 1550 3.305608 GCAAGAACCCAGATTTTGACCAG 60.306 47.826 0.00 0.00 0.00 4.00
1279 1564 2.601905 AGCAAGCAAGAACCCAGATTT 58.398 42.857 0.00 0.00 0.00 2.17
1283 1568 1.269936 CCAAAGCAAGCAAGAACCCAG 60.270 52.381 0.00 0.00 0.00 4.45
1337 1622 6.599638 CCAAAACCACCAAATTAGAAACCAAA 59.400 34.615 0.00 0.00 0.00 3.28
1343 1628 5.659079 ACACTCCAAAACCACCAAATTAGAA 59.341 36.000 0.00 0.00 0.00 2.10
1344 1629 5.205056 ACACTCCAAAACCACCAAATTAGA 58.795 37.500 0.00 0.00 0.00 2.10
1345 1630 5.529581 ACACTCCAAAACCACCAAATTAG 57.470 39.130 0.00 0.00 0.00 1.73
1346 1631 6.130569 AGTACACTCCAAAACCACCAAATTA 58.869 36.000 0.00 0.00 0.00 1.40
1348 1633 4.542697 AGTACACTCCAAAACCACCAAAT 58.457 39.130 0.00 0.00 0.00 2.32
1350 1635 3.547746 GAGTACACTCCAAAACCACCAA 58.452 45.455 0.00 0.00 37.02 3.67
1351 1636 3.202829 GAGTACACTCCAAAACCACCA 57.797 47.619 0.00 0.00 37.02 4.17
1363 1648 6.299141 ACATGAATTTGTTGAGGAGTACACT 58.701 36.000 0.00 0.00 0.00 3.55
1407 1692 2.673368 GCAGATAAACACACGGGAAGAG 59.327 50.000 0.00 0.00 0.00 2.85
1408 1693 2.037902 TGCAGATAAACACACGGGAAGA 59.962 45.455 0.00 0.00 0.00 2.87
1414 1699 2.413112 CCACTCTGCAGATAAACACACG 59.587 50.000 18.63 4.48 0.00 4.49
1438 1723 4.301505 GCCCGAAGCAGTGAATCA 57.698 55.556 0.00 0.00 42.97 2.57
1468 1756 2.271497 CCCAGCTCCAGCAAGAGG 59.729 66.667 0.48 0.00 45.16 3.69
1473 1761 3.324930 CTCCACCCAGCTCCAGCA 61.325 66.667 0.48 0.00 45.16 4.41
1479 1767 1.197430 CCAGACTTCTCCACCCAGCT 61.197 60.000 0.00 0.00 0.00 4.24
1480 1768 1.194781 TCCAGACTTCTCCACCCAGC 61.195 60.000 0.00 0.00 0.00 4.85
1481 1769 1.484240 GATCCAGACTTCTCCACCCAG 59.516 57.143 0.00 0.00 0.00 4.45
1482 1770 1.079490 AGATCCAGACTTCTCCACCCA 59.921 52.381 0.00 0.00 0.00 4.51
1483 1771 1.872773 AGATCCAGACTTCTCCACCC 58.127 55.000 0.00 0.00 0.00 4.61
1486 1774 2.568956 CACCAAGATCCAGACTTCTCCA 59.431 50.000 0.00 0.00 0.00 3.86
1516 1804 2.264813 CCGCAATTTCTCTGCAATTGG 58.735 47.619 7.72 0.00 40.55 3.16
1520 1808 1.586028 GCCCGCAATTTCTCTGCAA 59.414 52.632 0.00 0.00 39.91 4.08
1547 1835 2.045926 CCAAACGGAGCTCCAGGG 60.046 66.667 31.67 21.42 35.14 4.45
1557 1845 2.301577 TTTTTCTTGGCACCAAACGG 57.698 45.000 3.29 0.00 35.33 4.44
1558 1846 4.865776 TCTATTTTTCTTGGCACCAAACG 58.134 39.130 3.29 0.00 35.33 3.60
1589 1877 7.116736 ACAGGATTAAAACTCGGGATAATGTT 58.883 34.615 0.00 0.00 0.00 2.71
1630 1918 1.171308 CTGTCCACCAAATGAGGCAG 58.829 55.000 0.00 0.00 0.00 4.85
1655 1943 3.480133 GATGCGGTAGCCCCTGGT 61.480 66.667 0.00 0.00 44.33 4.00
1668 1956 1.180029 AACCATCACCAGCAAGATGC 58.820 50.000 0.00 0.00 45.46 3.91
1672 1960 2.094390 CCATCAAACCATCACCAGCAAG 60.094 50.000 0.00 0.00 0.00 4.01
1745 2033 4.427312 CAACTCTGAATTATTTGGCTGCC 58.573 43.478 12.87 12.87 0.00 4.85
1760 2048 2.277969 CTACTGATGCTGGCAACTCTG 58.722 52.381 0.00 0.98 37.61 3.35
1812 2100 1.227497 CTTCTCATCGGGCTGCTCC 60.227 63.158 0.00 0.00 0.00 4.70
1843 2131 2.124942 GAAGCTCTCCCCGCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
1886 2174 3.607370 GAACTCCGGCCACCCTCAC 62.607 68.421 2.24 0.00 0.00 3.51
1926 2214 1.143838 CACATCGATTGGCTCCGGA 59.856 57.895 2.93 2.93 0.00 5.14
1938 2226 2.545526 GGTGCTCATAACATCCACATCG 59.454 50.000 0.00 0.00 0.00 3.84
1948 2236 4.491924 CGAAACATACACGGTGCTCATAAC 60.492 45.833 8.30 0.00 0.00 1.89
2049 2337 1.375908 GTCTGCGGCATGGACAGAA 60.376 57.895 15.14 0.00 41.80 3.02
2050 2338 2.265739 GTCTGCGGCATGGACAGA 59.734 61.111 15.14 0.87 38.09 3.41
2062 2350 0.251341 ACATTGGGTTCCAGGTCTGC 60.251 55.000 0.00 0.00 33.81 4.26
2064 2352 0.405585 CCACATTGGGTTCCAGGTCT 59.594 55.000 0.00 0.00 33.81 3.85
2073 2361 0.758123 CCAAAGCAACCACATTGGGT 59.242 50.000 0.00 0.00 43.37 4.51
2167 2458 1.066587 CGGTGCGATCCTTCTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
2168 2459 2.427245 CCGGTGCGATCCTTCTCCT 61.427 63.158 0.00 0.00 0.00 3.69
2206 2554 2.036571 TGCAGCTGTTCCTGATGCG 61.037 57.895 16.64 0.00 45.12 4.73
2342 2693 4.742201 TGTCGCTCGCTTGGCTCC 62.742 66.667 0.00 0.00 0.00 4.70
2377 2728 3.414700 GGTGACGCTGTTGCTCCG 61.415 66.667 0.00 0.00 36.97 4.63
2475 2826 1.225704 CCTGAAGTGGCTCATCCCC 59.774 63.158 0.00 0.00 0.00 4.81
2602 2971 4.847444 GCTCAGCTTCCTCCGCCC 62.847 72.222 0.00 0.00 0.00 6.13
2604 2973 2.511145 CTGCTCAGCTTCCTCCGC 60.511 66.667 0.00 0.00 0.00 5.54
2691 3060 2.490685 GAGAAGCGGTCGGTCTCC 59.509 66.667 3.87 0.00 0.00 3.71
2853 3222 6.670695 AACATAACCAGGAAGAAAAGCATT 57.329 33.333 0.00 0.00 0.00 3.56
2854 3223 6.670695 AAACATAACCAGGAAGAAAAGCAT 57.329 33.333 0.00 0.00 0.00 3.79
2855 3224 7.601856 CATAAACATAACCAGGAAGAAAAGCA 58.398 34.615 0.00 0.00 0.00 3.91
2856 3225 6.531594 GCATAAACATAACCAGGAAGAAAAGC 59.468 38.462 0.00 0.00 0.00 3.51
2859 3228 6.945435 TCAGCATAAACATAACCAGGAAGAAA 59.055 34.615 0.00 0.00 0.00 2.52
2860 3229 6.480763 TCAGCATAAACATAACCAGGAAGAA 58.519 36.000 0.00 0.00 0.00 2.52
2862 3231 6.949352 ATCAGCATAAACATAACCAGGAAG 57.051 37.500 0.00 0.00 0.00 3.46
2894 3266 8.417884 ACCGAATTCCAAAATTAAAGAGAACAA 58.582 29.630 0.00 0.00 35.21 2.83
2898 3270 7.519032 ACACCGAATTCCAAAATTAAAGAGA 57.481 32.000 0.00 0.00 35.21 3.10
2956 3348 4.715297 AGTGAACGGAGGGAGTGTTATTAT 59.285 41.667 0.00 0.00 0.00 1.28
2959 3351 2.537143 AGTGAACGGAGGGAGTGTTAT 58.463 47.619 0.00 0.00 0.00 1.89
2962 3354 1.129058 AAAGTGAACGGAGGGAGTGT 58.871 50.000 0.00 0.00 0.00 3.55
2968 3360 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
2969 3361 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
2971 3363 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
2972 3364 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
2973 3365 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
2974 3366 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
2975 3367 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
2976 3368 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
2978 3370 8.614994 AAATTGTCTGAAACGACTTACAAAAG 57.385 30.769 0.00 0.00 38.77 2.27
3048 3440 9.109393 GCCATACTTCATCTGTTCACTTTTATA 57.891 33.333 0.00 0.00 0.00 0.98
3049 3441 7.831193 AGCCATACTTCATCTGTTCACTTTTAT 59.169 33.333 0.00 0.00 0.00 1.40
3050 3442 7.168219 AGCCATACTTCATCTGTTCACTTTTA 58.832 34.615 0.00 0.00 0.00 1.52
3051 3443 6.006449 AGCCATACTTCATCTGTTCACTTTT 58.994 36.000 0.00 0.00 0.00 2.27
3052 3444 5.564550 AGCCATACTTCATCTGTTCACTTT 58.435 37.500 0.00 0.00 0.00 2.66
3053 3445 5.171339 AGCCATACTTCATCTGTTCACTT 57.829 39.130 0.00 0.00 0.00 3.16
3054 3446 4.833478 AGCCATACTTCATCTGTTCACT 57.167 40.909 0.00 0.00 0.00 3.41
3055 3447 4.937620 TCAAGCCATACTTCATCTGTTCAC 59.062 41.667 0.00 0.00 36.04 3.18
3056 3448 5.164620 TCAAGCCATACTTCATCTGTTCA 57.835 39.130 0.00 0.00 36.04 3.18
3057 3449 5.819379 TGATCAAGCCATACTTCATCTGTTC 59.181 40.000 0.00 0.00 36.85 3.18
3058 3450 5.748402 TGATCAAGCCATACTTCATCTGTT 58.252 37.500 0.00 0.00 36.85 3.16
3059 3451 5.363562 TGATCAAGCCATACTTCATCTGT 57.636 39.130 0.00 0.00 36.85 3.41
3060 3452 6.688637 TTTGATCAAGCCATACTTCATCTG 57.311 37.500 8.41 0.00 36.85 2.90
3061 3453 7.893124 ATTTTGATCAAGCCATACTTCATCT 57.107 32.000 8.41 0.00 36.85 2.90
3066 3458 9.520204 CGAATTTATTTTGATCAAGCCATACTT 57.480 29.630 8.41 4.00 40.05 2.24
3067 3459 8.902806 TCGAATTTATTTTGATCAAGCCATACT 58.097 29.630 8.41 0.00 0.00 2.12
3068 3460 9.173939 CTCGAATTTATTTTGATCAAGCCATAC 57.826 33.333 8.41 0.00 0.00 2.39
3069 3461 9.119418 TCTCGAATTTATTTTGATCAAGCCATA 57.881 29.630 8.41 4.41 0.00 2.74
3070 3462 7.999679 TCTCGAATTTATTTTGATCAAGCCAT 58.000 30.769 8.41 5.33 0.00 4.40
3111 3503 4.369182 TGAACTTCTGTTTCTCCGACTTC 58.631 43.478 0.00 0.00 36.39 3.01
3145 3844 1.280982 CGCACTAATCACGTCAGCAT 58.719 50.000 0.00 0.00 0.00 3.79
3158 3857 1.955663 CAGCACAGCACACGCACTA 60.956 57.895 0.00 0.00 42.27 2.74
3172 3871 0.251742 AGCATAAAACCTGCCCAGCA 60.252 50.000 0.00 0.00 40.56 4.41
3173 3872 0.174162 CAGCATAAAACCTGCCCAGC 59.826 55.000 0.00 0.00 40.56 4.85
3174 3873 0.174162 GCAGCATAAAACCTGCCCAG 59.826 55.000 1.38 0.00 46.59 4.45
3206 3905 3.276857 CATGTGCAAATACTCCAGAGCT 58.723 45.455 0.00 0.00 0.00 4.09
3218 3917 2.200930 ACCCCCAGCATGTGCAAA 59.799 55.556 7.83 0.00 45.16 3.68
3219 3918 2.601067 CACCCCCAGCATGTGCAA 60.601 61.111 7.83 0.00 45.16 4.08
3590 4378 1.748329 CGCCCTTGATGATCTCCGGA 61.748 60.000 2.93 2.93 0.00 5.14
3842 4633 0.913451 AGGGGTGCTGCTTGATCTCT 60.913 55.000 0.00 0.00 0.00 3.10
3867 4658 4.722700 CGCCCAGTTGACCCCCTG 62.723 72.222 0.00 0.00 0.00 4.45
3872 4663 2.045926 ATGAGCGCCCAGTTGACC 60.046 61.111 2.29 0.00 0.00 4.02
3941 4732 2.690778 GGTTGCTCCGCATTTCGCT 61.691 57.895 0.00 0.00 38.76 4.93
3944 4735 1.508088 CTGGGTTGCTCCGCATTTC 59.492 57.895 0.00 0.00 38.76 2.17
3947 4738 4.349503 TGCTGGGTTGCTCCGCAT 62.350 61.111 0.00 0.00 38.76 4.73
4022 4825 6.486993 GGACAAACTCTGTGGTCTAAAAGAAT 59.513 38.462 0.00 0.00 38.84 2.40
4069 4896 6.827641 TGTACAAACTCGCAAGCTTAAATAG 58.172 36.000 0.00 0.00 37.18 1.73
4099 4926 0.107017 CTGCCCTGGTTCCCATAGTG 60.107 60.000 0.00 0.00 30.82 2.74
4154 5081 6.154445 GCTTTCATCTGTTGTTGTGATTCAT 58.846 36.000 0.00 0.00 0.00 2.57
4162 5089 3.316029 TGACCTGCTTTCATCTGTTGTTG 59.684 43.478 0.00 0.00 0.00 3.33
4198 5127 5.426509 TGACAGGAATAAGATCATCCAGTGT 59.573 40.000 8.80 5.87 33.67 3.55
4219 5148 3.808174 GTCTAGAAAGGGTGTGTTGTGAC 59.192 47.826 0.00 0.00 0.00 3.67
4229 5158 1.280457 CCAGCCAGTCTAGAAAGGGT 58.720 55.000 9.89 9.89 0.00 4.34
4236 5165 3.933861 ATAAAACCCCAGCCAGTCTAG 57.066 47.619 0.00 0.00 0.00 2.43
4244 5173 5.869649 AATTGGTCATATAAAACCCCAGC 57.130 39.130 4.84 0.00 34.47 4.85
4370 5299 6.439375 TGCTCTTATGTTAGTTTACAGAGGGA 59.561 38.462 0.00 0.00 0.00 4.20
4371 5300 6.640518 TGCTCTTATGTTAGTTTACAGAGGG 58.359 40.000 0.00 0.00 0.00 4.30
4372 5301 8.723942 AATGCTCTTATGTTAGTTTACAGAGG 57.276 34.615 0.00 0.00 0.00 3.69
4422 5351 9.670442 TCCCTCCATAAACTAATATAAGAGTGT 57.330 33.333 0.00 0.00 0.00 3.55
4424 5353 9.900112 ACTCCCTCCATAAACTAATATAAGAGT 57.100 33.333 0.00 0.00 0.00 3.24
4429 5358 9.543231 CCTGTACTCCCTCCATAAACTAATATA 57.457 37.037 0.00 0.00 0.00 0.86
4430 5359 8.017251 ACCTGTACTCCCTCCATAAACTAATAT 58.983 37.037 0.00 0.00 0.00 1.28
4431 5360 7.367828 ACCTGTACTCCCTCCATAAACTAATA 58.632 38.462 0.00 0.00 0.00 0.98
4432 5361 6.210522 ACCTGTACTCCCTCCATAAACTAAT 58.789 40.000 0.00 0.00 0.00 1.73
4433 5362 5.596763 ACCTGTACTCCCTCCATAAACTAA 58.403 41.667 0.00 0.00 0.00 2.24
4434 5363 5.216665 ACCTGTACTCCCTCCATAAACTA 57.783 43.478 0.00 0.00 0.00 2.24
4435 5364 4.076175 ACCTGTACTCCCTCCATAAACT 57.924 45.455 0.00 0.00 0.00 2.66
4436 5365 4.838904 AACCTGTACTCCCTCCATAAAC 57.161 45.455 0.00 0.00 0.00 2.01
4437 5366 5.104652 GCTTAACCTGTACTCCCTCCATAAA 60.105 44.000 0.00 0.00 0.00 1.40
4438 5367 4.407945 GCTTAACCTGTACTCCCTCCATAA 59.592 45.833 0.00 0.00 0.00 1.90
4439 5368 3.965347 GCTTAACCTGTACTCCCTCCATA 59.035 47.826 0.00 0.00 0.00 2.74
4440 5369 2.772515 GCTTAACCTGTACTCCCTCCAT 59.227 50.000 0.00 0.00 0.00 3.41
4441 5370 2.185387 GCTTAACCTGTACTCCCTCCA 58.815 52.381 0.00 0.00 0.00 3.86
4442 5371 2.468915 AGCTTAACCTGTACTCCCTCC 58.531 52.381 0.00 0.00 0.00 4.30
4443 5372 5.672421 TTTAGCTTAACCTGTACTCCCTC 57.328 43.478 0.00 0.00 0.00 4.30
4444 5373 7.744678 TTATTTAGCTTAACCTGTACTCCCT 57.255 36.000 0.00 0.00 0.00 4.20
4445 5374 8.837389 CAATTATTTAGCTTAACCTGTACTCCC 58.163 37.037 0.00 0.00 0.00 4.30
4446 5375 9.609346 TCAATTATTTAGCTTAACCTGTACTCC 57.391 33.333 0.00 0.00 0.00 3.85
4469 5398 7.552687 CACCACAGATTAGGCTAAATTAGTCAA 59.447 37.037 11.59 0.40 31.34 3.18
4707 5637 4.103153 TCATTTTCCCTCCGCATTCTCTAT 59.897 41.667 0.00 0.00 0.00 1.98
4708 5638 3.454447 TCATTTTCCCTCCGCATTCTCTA 59.546 43.478 0.00 0.00 0.00 2.43
4709 5639 2.239654 TCATTTTCCCTCCGCATTCTCT 59.760 45.455 0.00 0.00 0.00 3.10
4719 5649 3.703052 ACATTCTGGCATCATTTTCCCTC 59.297 43.478 0.00 0.00 0.00 4.30
4741 5671 3.497942 GGCCTTTGGAACTGGTAAAGAGA 60.498 47.826 0.00 0.00 34.23 3.10
4818 5748 1.105759 GCTCCAAGACCATCCCATGC 61.106 60.000 0.00 0.00 0.00 4.06
5041 5976 1.269448 GAAAGCCGTCCAAAGAATGCA 59.731 47.619 0.00 0.00 0.00 3.96
5097 6032 2.046023 CTTGCGTGCAGGATGGGA 60.046 61.111 11.29 0.00 35.86 4.37
5156 6093 7.400599 TGGTTTCGTACTAGAAGATGTATGT 57.599 36.000 0.00 0.00 0.00 2.29
5324 6264 4.578516 CCTCGAGAGACTGTCAGTTATGAT 59.421 45.833 15.71 0.00 35.05 2.45
5326 6266 3.942115 TCCTCGAGAGACTGTCAGTTATG 59.058 47.826 15.71 0.00 35.39 1.90
5328 6268 3.697619 TCCTCGAGAGACTGTCAGTTA 57.302 47.619 15.71 0.00 35.39 2.24
5684 6647 3.389983 GGCTGTGGTATAGTTGGGTATCA 59.610 47.826 0.00 0.00 0.00 2.15
5715 6678 6.435277 AGCAGGTTAGTCATTTCACATCATTT 59.565 34.615 0.00 0.00 0.00 2.32
5777 6740 1.478510 CTTAGTGTGTGGAGGAGCGAT 59.521 52.381 0.00 0.00 0.00 4.58
5812 6775 5.396484 CAGAATTTTGTGGCACTATGTCTG 58.604 41.667 19.83 18.51 0.00 3.51
5889 6852 7.870954 TCTTAAATCTAACTTGAAGAACGCTGA 59.129 33.333 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.