Multiple sequence alignment - TraesCS6A01G242300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G242300 chr6A 100.000 4997 0 0 1 4997 453912665 453907669 0.000000e+00 9228.0
1 TraesCS6A01G242300 chr6A 95.635 779 28 5 2513 3290 86402666 86403439 0.000000e+00 1245.0
2 TraesCS6A01G242300 chr6B 94.242 1754 68 16 783 2511 508604952 508606697 0.000000e+00 2649.0
3 TraesCS6A01G242300 chr6B 92.866 799 25 10 3496 4270 508606931 508607721 0.000000e+00 1131.0
4 TraesCS6A01G242300 chr6B 86.565 722 50 28 4286 4997 508607703 508608387 0.000000e+00 752.0
5 TraesCS6A01G242300 chr6B 93.810 210 10 1 3291 3497 508606689 508606898 3.760000e-81 313.0
6 TraesCS6A01G242300 chr6B 93.548 62 2 2 722 781 518029605 518029544 1.920000e-14 91.6
7 TraesCS6A01G242300 chr6D 93.925 1679 90 7 782 2454 316104200 316102528 0.000000e+00 2525.0
8 TraesCS6A01G242300 chr6D 95.642 872 22 8 3412 4270 316101946 316101078 0.000000e+00 1386.0
9 TraesCS6A01G242300 chr6D 87.569 724 42 23 4286 4997 316101096 316100409 0.000000e+00 795.0
10 TraesCS6A01G242300 chr6D 94.030 134 8 0 3291 3424 316102499 316102366 2.360000e-48 204.0
11 TraesCS6A01G242300 chr2A 97.125 800 15 8 2507 3300 81078235 81079032 0.000000e+00 1343.0
12 TraesCS6A01G242300 chr2A 96.241 798 14 7 2512 3296 636058787 636057993 0.000000e+00 1293.0
13 TraesCS6A01G242300 chr2A 89.806 206 9 3 3096 3290 81078445 81078241 2.310000e-63 254.0
14 TraesCS6A01G242300 chr2A 83.886 211 28 6 3093 3300 159873173 159873380 3.950000e-46 196.0
15 TraesCS6A01G242300 chr2A 84.577 201 25 6 3100 3298 384882462 384882266 1.420000e-45 195.0
16 TraesCS6A01G242300 chr7A 97.208 788 11 2 2512 3289 632189967 632189181 0.000000e+00 1323.0
17 TraesCS6A01G242300 chr7A 96.863 797 13 3 2506 3290 642324933 642324137 0.000000e+00 1323.0
18 TraesCS6A01G242300 chr7A 96.927 781 20 4 2513 3290 543441753 543440974 0.000000e+00 1306.0
19 TraesCS6A01G242300 chr3A 96.970 792 9 6 2510 3290 311448303 311449090 0.000000e+00 1315.0
20 TraesCS6A01G242300 chr3A 96.056 786 21 7 2508 3290 714770686 714771464 0.000000e+00 1271.0
21 TraesCS6A01G242300 chr5A 95.669 785 32 2 2506 3290 604717595 604718377 0.000000e+00 1260.0
22 TraesCS6A01G242300 chr5A 94.359 195 10 1 3096 3289 466023223 466023417 1.050000e-76 298.0
23 TraesCS6A01G242300 chr5A 87.931 116 12 2 2498 2613 555411966 555412079 8.730000e-28 135.0
24 TraesCS6A01G242300 chr5A 87.931 116 12 2 2498 2613 555441790 555441903 8.730000e-28 135.0
25 TraesCS6A01G242300 chr4A 95.558 788 29 5 2508 3293 176544766 176543983 0.000000e+00 1256.0
26 TraesCS6A01G242300 chr3B 99.683 630 2 0 1 630 177500785 177500156 0.000000e+00 1153.0
27 TraesCS6A01G242300 chr3B 98.780 164 1 1 626 789 177496930 177496768 1.760000e-74 291.0
28 TraesCS6A01G242300 chr3B 80.000 130 18 6 657 783 420331731 420331855 6.890000e-14 89.8
29 TraesCS6A01G242300 chr4B 88.235 119 10 4 2 118 476236371 476236255 6.750000e-29 139.0
30 TraesCS6A01G242300 chr4D 81.143 175 20 7 2497 2662 296700896 296701066 1.460000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G242300 chr6A 453907669 453912665 4996 True 9228.00 9228 100.00000 1 4997 1 chr6A.!!$R1 4996
1 TraesCS6A01G242300 chr6A 86402666 86403439 773 False 1245.00 1245 95.63500 2513 3290 1 chr6A.!!$F1 777
2 TraesCS6A01G242300 chr6B 508604952 508608387 3435 False 1211.25 2649 91.87075 783 4997 4 chr6B.!!$F1 4214
3 TraesCS6A01G242300 chr6D 316100409 316104200 3791 True 1227.50 2525 92.79150 782 4997 4 chr6D.!!$R1 4215
4 TraesCS6A01G242300 chr2A 81078235 81079032 797 False 1343.00 1343 97.12500 2507 3300 1 chr2A.!!$F1 793
5 TraesCS6A01G242300 chr2A 636057993 636058787 794 True 1293.00 1293 96.24100 2512 3296 1 chr2A.!!$R3 784
6 TraesCS6A01G242300 chr7A 632189181 632189967 786 True 1323.00 1323 97.20800 2512 3289 1 chr7A.!!$R2 777
7 TraesCS6A01G242300 chr7A 642324137 642324933 796 True 1323.00 1323 96.86300 2506 3290 1 chr7A.!!$R3 784
8 TraesCS6A01G242300 chr7A 543440974 543441753 779 True 1306.00 1306 96.92700 2513 3290 1 chr7A.!!$R1 777
9 TraesCS6A01G242300 chr3A 311448303 311449090 787 False 1315.00 1315 96.97000 2510 3290 1 chr3A.!!$F1 780
10 TraesCS6A01G242300 chr3A 714770686 714771464 778 False 1271.00 1271 96.05600 2508 3290 1 chr3A.!!$F2 782
11 TraesCS6A01G242300 chr5A 604717595 604718377 782 False 1260.00 1260 95.66900 2506 3290 1 chr5A.!!$F4 784
12 TraesCS6A01G242300 chr4A 176543983 176544766 783 True 1256.00 1256 95.55800 2508 3293 1 chr4A.!!$R1 785
13 TraesCS6A01G242300 chr3B 177496768 177500785 4017 True 722.00 1153 99.23150 1 789 2 chr3B.!!$R1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 625 0.037232 GGACGAAGGGTGTGGAAGAG 60.037 60.000 0.0 0.0 0.0 2.85 F
1704 1898 0.037326 TGCGTGAATGGAGTCTGGTC 60.037 55.000 0.0 0.0 0.0 4.02 F
1714 1908 1.343465 GGAGTCTGGTCGTTCTTTGGA 59.657 52.381 0.0 0.0 0.0 3.53 F
2850 4117 1.348064 TTCCCTCGGTCACTGTTCAT 58.652 50.000 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1951 0.028770 CACGTCAAGCGCTCCAAAAA 59.971 50.000 12.06 0.0 46.11 1.94 R
3579 6170 4.709886 AGCATTTGTAAGTTGGATAACCCC 59.290 41.667 0.00 0.0 37.52 4.95 R
3839 6438 4.712476 AGTATCATTCTGTTGCAGGGATC 58.288 43.478 0.00 0.0 31.51 3.36 R
4005 6618 0.109086 GCTAGTGTGAGAAGCTGCGA 60.109 55.000 0.00 0.0 33.40 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 5.064452 GCTATGTGCATCCAGTCTATTATGC 59.936 44.000 0.00 0.00 43.92 3.14
107 108 3.188048 GCATCCAGTCTATTATGCACAGC 59.812 47.826 0.00 0.00 43.30 4.40
108 109 4.383173 CATCCAGTCTATTATGCACAGCA 58.617 43.478 0.00 0.00 44.86 4.41
109 110 4.063998 TCCAGTCTATTATGCACAGCAG 57.936 45.455 0.00 0.00 43.65 4.24
110 111 3.706086 TCCAGTCTATTATGCACAGCAGA 59.294 43.478 0.00 0.00 43.65 4.26
111 112 4.346127 TCCAGTCTATTATGCACAGCAGAT 59.654 41.667 0.00 0.00 43.65 2.90
112 113 5.539955 TCCAGTCTATTATGCACAGCAGATA 59.460 40.000 0.00 0.00 43.65 1.98
113 114 5.636965 CCAGTCTATTATGCACAGCAGATAC 59.363 44.000 0.00 0.00 43.65 2.24
114 115 6.218746 CAGTCTATTATGCACAGCAGATACA 58.781 40.000 0.00 0.00 43.65 2.29
115 116 6.365518 CAGTCTATTATGCACAGCAGATACAG 59.634 42.308 0.00 0.00 43.65 2.74
116 117 6.266330 AGTCTATTATGCACAGCAGATACAGA 59.734 38.462 0.00 0.00 43.65 3.41
117 118 6.925718 GTCTATTATGCACAGCAGATACAGAA 59.074 38.462 0.00 0.00 43.65 3.02
118 119 7.439356 GTCTATTATGCACAGCAGATACAGAAA 59.561 37.037 0.00 0.00 43.65 2.52
119 120 8.152898 TCTATTATGCACAGCAGATACAGAAAT 58.847 33.333 0.00 0.00 43.65 2.17
120 121 9.428097 CTATTATGCACAGCAGATACAGAAATA 57.572 33.333 0.00 0.00 43.65 1.40
121 122 5.998454 ATGCACAGCAGATACAGAAATAC 57.002 39.130 0.00 0.00 43.65 1.89
122 123 3.865164 TGCACAGCAGATACAGAAATACG 59.135 43.478 0.00 0.00 33.32 3.06
123 124 3.865745 GCACAGCAGATACAGAAATACGT 59.134 43.478 0.00 0.00 0.00 3.57
124 125 5.041287 GCACAGCAGATACAGAAATACGTA 58.959 41.667 0.00 0.00 0.00 3.57
125 126 5.174035 GCACAGCAGATACAGAAATACGTAG 59.826 44.000 0.08 0.00 0.00 3.51
126 127 9.444332 TGCACAGCAGATACAGAAATACGTAGT 62.444 40.741 0.08 0.00 38.26 2.73
147 148 5.259832 GTACCCAAGTACTAGTAAGCAGG 57.740 47.826 3.61 6.47 44.65 4.85
148 149 4.057063 ACCCAAGTACTAGTAAGCAGGA 57.943 45.455 3.61 0.00 0.00 3.86
149 150 3.768215 ACCCAAGTACTAGTAAGCAGGAC 59.232 47.826 3.61 0.00 0.00 3.85
150 151 3.767673 CCCAAGTACTAGTAAGCAGGACA 59.232 47.826 3.61 0.00 28.37 4.02
151 152 4.142138 CCCAAGTACTAGTAAGCAGGACAG 60.142 50.000 3.61 0.00 28.37 3.51
152 153 4.425520 CAAGTACTAGTAAGCAGGACAGC 58.574 47.826 3.61 0.00 28.37 4.40
154 155 3.949113 AGTACTAGTAAGCAGGACAGCTC 59.051 47.826 3.61 0.00 45.89 4.09
155 156 1.746220 ACTAGTAAGCAGGACAGCTCG 59.254 52.381 0.00 0.00 45.89 5.03
156 157 1.066303 CTAGTAAGCAGGACAGCTCGG 59.934 57.143 0.00 0.00 45.89 4.63
157 158 0.612174 AGTAAGCAGGACAGCTCGGA 60.612 55.000 0.00 0.00 45.89 4.55
158 159 0.179124 GTAAGCAGGACAGCTCGGAG 60.179 60.000 0.00 0.00 45.89 4.63
159 160 1.323271 TAAGCAGGACAGCTCGGAGG 61.323 60.000 7.20 0.00 45.89 4.30
160 161 3.071206 GCAGGACAGCTCGGAGGA 61.071 66.667 7.20 0.00 0.00 3.71
161 162 2.430610 GCAGGACAGCTCGGAGGAT 61.431 63.158 7.20 0.00 0.00 3.24
162 163 1.440893 CAGGACAGCTCGGAGGATG 59.559 63.158 7.20 0.00 0.00 3.51
163 164 1.760086 AGGACAGCTCGGAGGATGG 60.760 63.158 7.20 0.00 0.00 3.51
164 165 2.801631 GGACAGCTCGGAGGATGGG 61.802 68.421 7.20 0.00 0.00 4.00
165 166 2.765807 ACAGCTCGGAGGATGGGG 60.766 66.667 7.20 0.00 0.00 4.96
166 167 2.765807 CAGCTCGGAGGATGGGGT 60.766 66.667 7.20 0.00 0.00 4.95
167 168 2.041265 AGCTCGGAGGATGGGGTT 59.959 61.111 7.20 0.00 0.00 4.11
168 169 2.190578 GCTCGGAGGATGGGGTTG 59.809 66.667 7.20 0.00 0.00 3.77
169 170 2.367202 GCTCGGAGGATGGGGTTGA 61.367 63.158 7.20 0.00 0.00 3.18
170 171 1.522569 CTCGGAGGATGGGGTTGAC 59.477 63.158 0.00 0.00 0.00 3.18
171 172 1.972660 CTCGGAGGATGGGGTTGACC 61.973 65.000 0.00 0.00 39.11 4.02
172 173 1.995626 CGGAGGATGGGGTTGACCT 60.996 63.158 0.00 0.00 40.03 3.85
173 174 1.562672 CGGAGGATGGGGTTGACCTT 61.563 60.000 0.00 0.00 40.03 3.50
174 175 1.591768 GGAGGATGGGGTTGACCTTA 58.408 55.000 0.00 0.00 40.03 2.69
175 176 1.490910 GGAGGATGGGGTTGACCTTAG 59.509 57.143 0.00 0.00 40.03 2.18
176 177 1.490910 GAGGATGGGGTTGACCTTAGG 59.509 57.143 0.00 0.00 40.03 2.69
177 178 1.203570 AGGATGGGGTTGACCTTAGGT 60.204 52.381 2.34 2.34 39.44 3.08
178 179 1.064685 GGATGGGGTTGACCTTAGGTG 60.065 57.143 9.39 0.00 35.25 4.00
179 180 0.331616 ATGGGGTTGACCTTAGGTGC 59.668 55.000 9.39 0.98 35.25 5.01
180 181 0.770557 TGGGGTTGACCTTAGGTGCT 60.771 55.000 9.39 0.00 35.25 4.40
181 182 0.404426 GGGGTTGACCTTAGGTGCTT 59.596 55.000 9.39 0.00 35.25 3.91
182 183 1.534729 GGGTTGACCTTAGGTGCTTG 58.465 55.000 9.39 0.00 35.25 4.01
183 184 1.534729 GGTTGACCTTAGGTGCTTGG 58.465 55.000 9.39 0.00 35.25 3.61
184 185 1.073284 GGTTGACCTTAGGTGCTTGGA 59.927 52.381 9.39 0.00 35.25 3.53
185 186 2.427506 GTTGACCTTAGGTGCTTGGAG 58.572 52.381 9.39 0.00 35.25 3.86
186 187 1.729586 TGACCTTAGGTGCTTGGAGT 58.270 50.000 9.39 0.00 35.25 3.85
187 188 1.347707 TGACCTTAGGTGCTTGGAGTG 59.652 52.381 9.39 0.00 35.25 3.51
188 189 0.693049 ACCTTAGGTGCTTGGAGTGG 59.307 55.000 1.74 0.00 32.98 4.00
189 190 0.984230 CCTTAGGTGCTTGGAGTGGA 59.016 55.000 0.00 0.00 0.00 4.02
190 191 1.339151 CCTTAGGTGCTTGGAGTGGAC 60.339 57.143 0.00 0.00 0.00 4.02
191 192 0.320374 TTAGGTGCTTGGAGTGGACG 59.680 55.000 0.00 0.00 0.00 4.79
192 193 1.541310 TAGGTGCTTGGAGTGGACGG 61.541 60.000 0.00 0.00 0.00 4.79
193 194 2.741092 GTGCTTGGAGTGGACGGA 59.259 61.111 0.00 0.00 0.00 4.69
194 195 1.374758 GTGCTTGGAGTGGACGGAG 60.375 63.158 0.00 0.00 0.00 4.63
207 208 2.596776 ACGGAGTGGCTAATCTGCT 58.403 52.632 6.23 0.00 42.51 4.24
208 209 0.905357 ACGGAGTGGCTAATCTGCTT 59.095 50.000 6.23 0.00 42.51 3.91
209 210 1.293924 CGGAGTGGCTAATCTGCTTG 58.706 55.000 0.00 0.00 0.00 4.01
210 211 1.020437 GGAGTGGCTAATCTGCTTGC 58.980 55.000 0.00 0.00 0.00 4.01
211 212 1.679944 GGAGTGGCTAATCTGCTTGCA 60.680 52.381 0.00 0.00 0.00 4.08
212 213 1.399791 GAGTGGCTAATCTGCTTGCAC 59.600 52.381 0.00 0.00 0.00 4.57
213 214 1.004044 AGTGGCTAATCTGCTTGCACT 59.996 47.619 0.00 0.00 31.51 4.40
214 215 1.399791 GTGGCTAATCTGCTTGCACTC 59.600 52.381 0.00 0.00 0.00 3.51
215 216 0.654683 GGCTAATCTGCTTGCACTCG 59.345 55.000 0.00 0.00 0.00 4.18
216 217 1.645034 GCTAATCTGCTTGCACTCGA 58.355 50.000 0.00 0.00 0.00 4.04
217 218 2.002586 GCTAATCTGCTTGCACTCGAA 58.997 47.619 0.00 0.00 0.00 3.71
218 219 2.222908 GCTAATCTGCTTGCACTCGAAC 60.223 50.000 0.00 0.00 0.00 3.95
219 220 2.175878 AATCTGCTTGCACTCGAACT 57.824 45.000 0.00 0.00 0.00 3.01
220 221 1.436600 ATCTGCTTGCACTCGAACTG 58.563 50.000 0.00 0.00 0.00 3.16
221 222 0.601046 TCTGCTTGCACTCGAACTGG 60.601 55.000 0.00 0.00 0.00 4.00
222 223 2.180131 CTGCTTGCACTCGAACTGGC 62.180 60.000 0.00 0.00 0.00 4.85
223 224 2.856032 CTTGCACTCGAACTGGCG 59.144 61.111 0.00 0.00 0.00 5.69
224 225 1.664649 CTTGCACTCGAACTGGCGA 60.665 57.895 0.00 0.00 38.74 5.54
225 226 1.891060 CTTGCACTCGAACTGGCGAC 61.891 60.000 0.00 0.00 36.17 5.19
226 227 3.470567 GCACTCGAACTGGCGACG 61.471 66.667 0.00 0.00 36.17 5.12
227 228 3.470567 CACTCGAACTGGCGACGC 61.471 66.667 12.43 12.43 36.17 5.19
228 229 3.671411 ACTCGAACTGGCGACGCT 61.671 61.111 20.77 0.00 36.17 5.07
229 230 2.430921 CTCGAACTGGCGACGCTT 60.431 61.111 20.77 6.11 36.17 4.68
230 231 2.720758 CTCGAACTGGCGACGCTTG 61.721 63.158 20.77 14.65 36.17 4.01
231 232 4.430423 CGAACTGGCGACGCTTGC 62.430 66.667 20.77 3.48 0.00 4.01
240 241 3.491652 GACGCTTGCCTTCGCCTC 61.492 66.667 0.00 0.00 0.00 4.70
242 243 4.767255 CGCTTGCCTTCGCCTCCT 62.767 66.667 0.00 0.00 0.00 3.69
243 244 2.821810 GCTTGCCTTCGCCTCCTC 60.822 66.667 0.00 0.00 0.00 3.71
244 245 2.124942 CTTGCCTTCGCCTCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
245 246 4.082523 TTGCCTTCGCCTCCTCCG 62.083 66.667 0.00 0.00 0.00 4.63
258 259 4.609018 CTCCGCCCATCGCCGATT 62.609 66.667 0.00 0.00 36.73 3.34
259 260 4.169696 TCCGCCCATCGCCGATTT 62.170 61.111 0.00 0.00 36.73 2.17
260 261 3.952675 CCGCCCATCGCCGATTTG 61.953 66.667 0.00 0.00 36.73 2.32
261 262 3.952675 CGCCCATCGCCGATTTGG 61.953 66.667 0.00 2.12 42.50 3.28
262 263 2.828549 GCCCATCGCCGATTTGGT 60.829 61.111 12.53 0.00 41.21 3.67
263 264 2.834618 GCCCATCGCCGATTTGGTC 61.835 63.158 12.53 0.00 41.21 4.02
271 272 4.910956 CGATTTGGTCGCCAGAGA 57.089 55.556 0.00 0.00 44.33 3.10
272 273 3.137484 CGATTTGGTCGCCAGAGAA 57.863 52.632 0.00 0.00 44.33 2.87
273 274 1.438651 CGATTTGGTCGCCAGAGAAA 58.561 50.000 0.00 0.00 44.33 2.52
274 275 1.804151 CGATTTGGTCGCCAGAGAAAA 59.196 47.619 0.00 0.00 44.33 2.29
275 276 2.225491 CGATTTGGTCGCCAGAGAAAAA 59.775 45.455 0.00 0.00 44.33 1.94
294 295 1.839424 AAAAATGGAGAAGGGAGCGG 58.161 50.000 0.00 0.00 0.00 5.52
295 296 0.681243 AAAATGGAGAAGGGAGCGGC 60.681 55.000 0.00 0.00 0.00 6.53
296 297 2.558380 AAATGGAGAAGGGAGCGGCC 62.558 60.000 0.00 0.00 0.00 6.13
317 318 3.473647 CGGAGCAGATGCAGGGGA 61.474 66.667 7.68 0.00 45.16 4.81
318 319 2.509916 GGAGCAGATGCAGGGGAG 59.490 66.667 7.68 0.00 45.16 4.30
319 320 2.203181 GAGCAGATGCAGGGGAGC 60.203 66.667 7.68 0.00 45.16 4.70
320 321 4.172512 AGCAGATGCAGGGGAGCG 62.173 66.667 7.68 0.00 45.16 5.03
336 337 4.530857 CGCCGGGGACACCTCATC 62.531 72.222 14.46 0.00 36.97 2.92
337 338 4.530857 GCCGGGGACACCTCATCG 62.531 72.222 2.18 0.00 36.97 3.84
338 339 3.075005 CCGGGGACACCTCATCGT 61.075 66.667 0.00 0.00 36.97 3.73
339 340 1.755395 CCGGGGACACCTCATCGTA 60.755 63.158 0.00 0.00 36.97 3.43
340 341 1.436336 CGGGGACACCTCATCGTAC 59.564 63.158 0.00 0.00 36.97 3.67
341 342 1.035932 CGGGGACACCTCATCGTACT 61.036 60.000 0.00 0.00 36.97 2.73
342 343 0.460311 GGGGACACCTCATCGTACTG 59.540 60.000 0.00 0.00 36.80 2.74
343 344 0.460311 GGGACACCTCATCGTACTGG 59.540 60.000 0.00 0.00 0.00 4.00
344 345 1.471119 GGACACCTCATCGTACTGGA 58.529 55.000 0.00 0.00 0.00 3.86
345 346 1.822990 GGACACCTCATCGTACTGGAA 59.177 52.381 0.00 0.00 0.00 3.53
346 347 2.159226 GGACACCTCATCGTACTGGAAG 60.159 54.545 0.00 0.00 42.29 3.46
347 348 2.753452 GACACCTCATCGTACTGGAAGA 59.247 50.000 0.00 0.00 37.43 2.87
348 349 2.755655 ACACCTCATCGTACTGGAAGAG 59.244 50.000 0.00 0.00 37.43 2.85
349 350 1.751924 ACCTCATCGTACTGGAAGAGC 59.248 52.381 0.00 0.00 37.43 4.09
350 351 2.028130 CCTCATCGTACTGGAAGAGCT 58.972 52.381 0.00 0.00 37.43 4.09
351 352 2.223688 CCTCATCGTACTGGAAGAGCTG 60.224 54.545 0.00 0.00 37.43 4.24
352 353 2.685388 CTCATCGTACTGGAAGAGCTGA 59.315 50.000 0.00 0.00 37.43 4.26
353 354 3.291584 TCATCGTACTGGAAGAGCTGAT 58.708 45.455 0.00 0.00 37.43 2.90
354 355 3.316588 TCATCGTACTGGAAGAGCTGATC 59.683 47.826 0.00 0.00 37.43 2.92
355 356 1.671328 TCGTACTGGAAGAGCTGATCG 59.329 52.381 0.00 0.00 37.43 3.69
356 357 1.671328 CGTACTGGAAGAGCTGATCGA 59.329 52.381 0.00 0.00 37.43 3.59
357 358 2.286713 CGTACTGGAAGAGCTGATCGAG 60.287 54.545 0.00 0.00 37.43 4.04
358 359 0.459489 ACTGGAAGAGCTGATCGAGC 59.541 55.000 0.00 8.56 43.06 5.03
359 360 3.211670 ACTGGAAGAGCTGATCGAGCG 62.212 57.143 0.00 0.00 45.99 5.03
365 366 2.024871 GCTGATCGAGCGCGTACT 59.975 61.111 10.30 0.00 38.15 2.73
366 367 2.006587 GCTGATCGAGCGCGTACTC 61.007 63.158 10.30 5.75 38.15 2.59
367 368 1.369448 CTGATCGAGCGCGTACTCC 60.369 63.158 10.30 0.00 38.98 3.85
368 369 2.048312 CTGATCGAGCGCGTACTCCA 62.048 60.000 10.30 0.00 38.98 3.86
369 370 1.283181 GATCGAGCGCGTACTCCAT 59.717 57.895 10.30 0.09 38.98 3.41
370 371 0.726452 GATCGAGCGCGTACTCCATC 60.726 60.000 10.30 6.78 38.98 3.51
371 372 2.131294 ATCGAGCGCGTACTCCATCC 62.131 60.000 10.30 0.00 38.98 3.51
372 373 2.805546 GAGCGCGTACTCCATCCA 59.194 61.111 8.43 0.00 0.00 3.41
373 374 1.299468 GAGCGCGTACTCCATCCAG 60.299 63.158 8.43 0.00 0.00 3.86
374 375 1.725557 GAGCGCGTACTCCATCCAGA 61.726 60.000 8.43 0.00 0.00 3.86
375 376 1.299468 GCGCGTACTCCATCCAGAG 60.299 63.158 8.43 0.00 39.91 3.35
376 377 1.299468 CGCGTACTCCATCCAGAGC 60.299 63.158 0.00 0.00 37.39 4.09
377 378 1.729470 CGCGTACTCCATCCAGAGCT 61.729 60.000 0.00 0.00 37.39 4.09
378 379 0.249238 GCGTACTCCATCCAGAGCTG 60.249 60.000 0.00 0.00 37.39 4.24
387 388 2.125350 CCAGAGCTGGCTTCGTCC 60.125 66.667 3.18 0.00 44.73 4.79
388 389 2.654079 CCAGAGCTGGCTTCGTCCT 61.654 63.158 3.18 0.00 44.73 3.85
389 390 1.153667 CAGAGCTGGCTTCGTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
390 391 2.202676 GAGCTGGCTTCGTCCTCG 60.203 66.667 0.00 0.00 38.55 4.63
391 392 2.676822 AGCTGGCTTCGTCCTCGA 60.677 61.111 0.00 0.00 44.66 4.04
392 393 2.010582 GAGCTGGCTTCGTCCTCGAT 62.011 60.000 0.00 0.00 45.65 3.59
393 394 1.590259 GCTGGCTTCGTCCTCGATC 60.590 63.158 0.00 0.00 45.65 3.69
394 395 1.066587 CTGGCTTCGTCCTCGATCC 59.933 63.158 0.00 0.00 45.65 3.36
395 396 1.667154 CTGGCTTCGTCCTCGATCCA 61.667 60.000 10.06 10.06 45.65 3.41
396 397 1.066587 GGCTTCGTCCTCGATCCAG 59.933 63.158 0.00 0.00 45.65 3.86
397 398 1.590259 GCTTCGTCCTCGATCCAGC 60.590 63.158 0.00 0.00 45.65 4.85
398 399 1.066587 CTTCGTCCTCGATCCAGCC 59.933 63.158 0.00 0.00 45.65 4.85
399 400 1.379977 TTCGTCCTCGATCCAGCCT 60.380 57.895 0.00 0.00 45.65 4.58
400 401 1.384989 TTCGTCCTCGATCCAGCCTC 61.385 60.000 0.00 0.00 45.65 4.70
401 402 2.121538 CGTCCTCGATCCAGCCTCA 61.122 63.158 0.00 0.00 39.71 3.86
402 403 1.667154 CGTCCTCGATCCAGCCTCAA 61.667 60.000 0.00 0.00 39.71 3.02
403 404 0.179097 GTCCTCGATCCAGCCTCAAC 60.179 60.000 0.00 0.00 0.00 3.18
404 405 0.614697 TCCTCGATCCAGCCTCAACA 60.615 55.000 0.00 0.00 0.00 3.33
405 406 0.179089 CCTCGATCCAGCCTCAACAG 60.179 60.000 0.00 0.00 0.00 3.16
406 407 0.820226 CTCGATCCAGCCTCAACAGA 59.180 55.000 0.00 0.00 0.00 3.41
407 408 1.411977 CTCGATCCAGCCTCAACAGAT 59.588 52.381 0.00 0.00 0.00 2.90
408 409 1.410517 TCGATCCAGCCTCAACAGATC 59.589 52.381 0.00 0.00 0.00 2.75
409 410 1.863267 GATCCAGCCTCAACAGATCG 58.137 55.000 0.00 0.00 0.00 3.69
410 411 0.467384 ATCCAGCCTCAACAGATCGG 59.533 55.000 0.00 0.00 0.00 4.18
411 412 0.614697 TCCAGCCTCAACAGATCGGA 60.615 55.000 0.00 0.00 0.00 4.55
412 413 0.460987 CCAGCCTCAACAGATCGGAC 60.461 60.000 0.00 0.00 0.00 4.79
413 414 0.247460 CAGCCTCAACAGATCGGACA 59.753 55.000 0.00 0.00 0.00 4.02
414 415 0.247736 AGCCTCAACAGATCGGACAC 59.752 55.000 0.00 0.00 0.00 3.67
415 416 1.078759 GCCTCAACAGATCGGACACG 61.079 60.000 0.00 0.00 42.74 4.49
416 417 0.458543 CCTCAACAGATCGGACACGG 60.459 60.000 0.00 0.00 41.39 4.94
417 418 0.458543 CTCAACAGATCGGACACGGG 60.459 60.000 0.00 0.00 41.39 5.28
418 419 1.183030 TCAACAGATCGGACACGGGT 61.183 55.000 0.00 0.00 41.39 5.28
419 420 1.014044 CAACAGATCGGACACGGGTG 61.014 60.000 0.00 0.00 41.39 4.61
420 421 2.167398 AACAGATCGGACACGGGTGG 62.167 60.000 0.00 0.00 41.39 4.61
421 422 3.075005 AGATCGGACACGGGTGGG 61.075 66.667 0.00 0.00 41.39 4.61
422 423 3.387947 GATCGGACACGGGTGGGT 61.388 66.667 0.00 0.00 41.39 4.51
423 424 2.037687 ATCGGACACGGGTGGGTA 59.962 61.111 0.00 0.00 41.39 3.69
424 425 2.288788 GATCGGACACGGGTGGGTAC 62.289 65.000 0.00 0.00 41.39 3.34
425 426 3.304721 CGGACACGGGTGGGTACA 61.305 66.667 0.00 0.00 36.18 2.90
426 427 2.344872 GGACACGGGTGGGTACAC 59.655 66.667 0.00 0.00 46.97 2.90
434 435 2.033602 GTGGGTACACAGGCCACC 59.966 66.667 5.01 2.31 46.90 4.61
435 436 3.632080 TGGGTACACAGGCCACCG 61.632 66.667 5.01 0.00 32.84 4.94
436 437 4.404098 GGGTACACAGGCCACCGG 62.404 72.222 5.01 0.00 32.84 5.28
437 438 3.315949 GGTACACAGGCCACCGGA 61.316 66.667 9.46 0.00 0.00 5.14
438 439 2.666098 GGTACACAGGCCACCGGAT 61.666 63.158 9.46 0.00 0.00 4.18
439 440 1.298667 GTACACAGGCCACCGGATT 59.701 57.895 9.46 0.00 0.00 3.01
440 441 0.322187 GTACACAGGCCACCGGATTT 60.322 55.000 9.46 0.00 0.00 2.17
441 442 0.322098 TACACAGGCCACCGGATTTG 60.322 55.000 9.46 0.00 0.00 2.32
442 443 1.303236 CACAGGCCACCGGATTTGA 60.303 57.895 9.46 0.00 0.00 2.69
443 444 0.680921 CACAGGCCACCGGATTTGAT 60.681 55.000 9.46 0.00 0.00 2.57
444 445 0.916086 ACAGGCCACCGGATTTGATA 59.084 50.000 9.46 0.00 0.00 2.15
445 446 1.494721 ACAGGCCACCGGATTTGATAT 59.505 47.619 9.46 0.00 0.00 1.63
446 447 1.881973 CAGGCCACCGGATTTGATATG 59.118 52.381 9.46 0.00 0.00 1.78
447 448 1.494721 AGGCCACCGGATTTGATATGT 59.505 47.619 9.46 0.00 0.00 2.29
448 449 2.708861 AGGCCACCGGATTTGATATGTA 59.291 45.455 9.46 0.00 0.00 2.29
449 450 3.330701 AGGCCACCGGATTTGATATGTAT 59.669 43.478 9.46 0.00 0.00 2.29
450 451 3.440173 GGCCACCGGATTTGATATGTATG 59.560 47.826 9.46 0.00 0.00 2.39
451 452 3.119849 GCCACCGGATTTGATATGTATGC 60.120 47.826 9.46 0.00 0.00 3.14
452 453 3.125146 CCACCGGATTTGATATGTATGCG 59.875 47.826 9.46 0.00 33.65 4.73
453 454 3.993736 CACCGGATTTGATATGTATGCGA 59.006 43.478 9.46 0.00 35.50 5.10
454 455 4.091945 CACCGGATTTGATATGTATGCGAG 59.908 45.833 9.46 0.00 35.50 5.03
455 456 3.062639 CCGGATTTGATATGTATGCGAGC 59.937 47.826 0.00 0.00 35.50 5.03
456 457 3.241773 CGGATTTGATATGTATGCGAGCG 60.242 47.826 0.00 0.00 35.50 5.03
457 458 3.062639 GGATTTGATATGTATGCGAGCGG 59.937 47.826 0.00 0.00 0.00 5.52
458 459 1.428448 TTGATATGTATGCGAGCGGC 58.572 50.000 0.00 0.00 43.96 6.53
473 474 4.899239 GGCGGCGTCTGGATCCAG 62.899 72.222 32.60 32.60 44.86 3.86
475 476 3.842923 CGGCGTCTGGATCCAGCT 61.843 66.667 33.39 0.00 43.31 4.24
476 477 2.202987 GGCGTCTGGATCCAGCTG 60.203 66.667 33.39 27.06 43.31 4.24
477 478 2.725312 GGCGTCTGGATCCAGCTGA 61.725 63.158 33.39 16.82 43.31 4.26
478 479 1.227205 GCGTCTGGATCCAGCTGAG 60.227 63.158 33.39 23.53 43.31 3.35
479 480 1.954362 GCGTCTGGATCCAGCTGAGT 61.954 60.000 33.39 2.31 43.31 3.41
480 481 0.179116 CGTCTGGATCCAGCTGAGTG 60.179 60.000 33.39 16.18 43.31 3.51
481 482 0.177604 GTCTGGATCCAGCTGAGTGG 59.822 60.000 33.39 11.68 43.31 4.00
482 483 1.153208 CTGGATCCAGCTGAGTGGC 60.153 63.158 28.45 0.00 37.53 5.01
483 484 2.202987 GGATCCAGCTGAGTGGCG 60.203 66.667 17.39 0.00 37.53 5.69
484 485 2.581354 GATCCAGCTGAGTGGCGT 59.419 61.111 17.39 0.00 37.53 5.68
485 486 1.812922 GATCCAGCTGAGTGGCGTG 60.813 63.158 17.39 0.00 37.53 5.34
486 487 3.320879 ATCCAGCTGAGTGGCGTGG 62.321 63.158 17.39 0.00 37.53 4.94
504 505 4.038080 GCGCCCGTTCCCAACTTG 62.038 66.667 0.00 0.00 0.00 3.16
505 506 4.038080 CGCCCGTTCCCAACTTGC 62.038 66.667 0.00 0.00 0.00 4.01
506 507 4.038080 GCCCGTTCCCAACTTGCG 62.038 66.667 0.00 0.00 0.00 4.85
507 508 3.361977 CCCGTTCCCAACTTGCGG 61.362 66.667 0.00 0.00 41.82 5.69
508 509 4.038080 CCGTTCCCAACTTGCGGC 62.038 66.667 0.00 0.00 35.90 6.53
509 510 4.383602 CGTTCCCAACTTGCGGCG 62.384 66.667 0.51 0.51 0.00 6.46
510 511 4.038080 GTTCCCAACTTGCGGCGG 62.038 66.667 9.78 0.00 0.00 6.13
530 531 3.775654 GGCGTGAGAGGGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
531 532 3.775654 GCGTGAGAGGGGTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
532 533 3.775654 CGTGAGAGGGGTGGAGGC 61.776 72.222 0.00 0.00 0.00 4.70
533 534 3.775654 GTGAGAGGGGTGGAGGCG 61.776 72.222 0.00 0.00 0.00 5.52
611 612 3.454573 CGACGGGATGGGGACGAA 61.455 66.667 0.00 0.00 0.00 3.85
612 613 2.499685 GACGGGATGGGGACGAAG 59.500 66.667 0.00 0.00 0.00 3.79
613 614 3.081409 ACGGGATGGGGACGAAGG 61.081 66.667 0.00 0.00 0.00 3.46
614 615 3.861797 CGGGATGGGGACGAAGGG 61.862 72.222 0.00 0.00 0.00 3.95
615 616 2.691252 GGGATGGGGACGAAGGGT 60.691 66.667 0.00 0.00 0.00 4.34
616 617 2.590092 GGATGGGGACGAAGGGTG 59.410 66.667 0.00 0.00 0.00 4.61
617 618 2.298661 GGATGGGGACGAAGGGTGT 61.299 63.158 0.00 0.00 0.00 4.16
618 619 1.078426 GATGGGGACGAAGGGTGTG 60.078 63.158 0.00 0.00 0.00 3.82
619 620 2.536997 GATGGGGACGAAGGGTGTGG 62.537 65.000 0.00 0.00 0.00 4.17
620 621 2.926242 GGGGACGAAGGGTGTGGA 60.926 66.667 0.00 0.00 0.00 4.02
621 622 2.522367 GGGGACGAAGGGTGTGGAA 61.522 63.158 0.00 0.00 0.00 3.53
622 623 1.003718 GGGACGAAGGGTGTGGAAG 60.004 63.158 0.00 0.00 0.00 3.46
623 624 1.477685 GGGACGAAGGGTGTGGAAGA 61.478 60.000 0.00 0.00 0.00 2.87
624 625 0.037232 GGACGAAGGGTGTGGAAGAG 60.037 60.000 0.00 0.00 0.00 2.85
625 626 0.680061 GACGAAGGGTGTGGAAGAGT 59.320 55.000 0.00 0.00 0.00 3.24
626 627 1.891150 GACGAAGGGTGTGGAAGAGTA 59.109 52.381 0.00 0.00 0.00 2.59
627 628 1.893801 ACGAAGGGTGTGGAAGAGTAG 59.106 52.381 0.00 0.00 0.00 2.57
628 629 2.168496 CGAAGGGTGTGGAAGAGTAGA 58.832 52.381 0.00 0.00 0.00 2.59
629 630 2.761208 CGAAGGGTGTGGAAGAGTAGAT 59.239 50.000 0.00 0.00 0.00 1.98
630 631 3.952323 CGAAGGGTGTGGAAGAGTAGATA 59.048 47.826 0.00 0.00 0.00 1.98
631 632 4.036971 CGAAGGGTGTGGAAGAGTAGATAG 59.963 50.000 0.00 0.00 0.00 2.08
632 633 3.301274 AGGGTGTGGAAGAGTAGATAGC 58.699 50.000 0.00 0.00 0.00 2.97
633 634 2.034812 GGGTGTGGAAGAGTAGATAGCG 59.965 54.545 0.00 0.00 0.00 4.26
634 635 2.950309 GGTGTGGAAGAGTAGATAGCGA 59.050 50.000 0.00 0.00 0.00 4.93
635 636 3.570550 GGTGTGGAAGAGTAGATAGCGAT 59.429 47.826 0.00 0.00 0.00 4.58
636 637 4.760715 GGTGTGGAAGAGTAGATAGCGATA 59.239 45.833 0.00 0.00 0.00 2.92
637 638 5.241064 GGTGTGGAAGAGTAGATAGCGATAA 59.759 44.000 0.00 0.00 0.00 1.75
638 639 6.238953 GGTGTGGAAGAGTAGATAGCGATAAA 60.239 42.308 0.00 0.00 0.00 1.40
639 640 7.371936 GTGTGGAAGAGTAGATAGCGATAAAT 58.628 38.462 0.00 0.00 0.00 1.40
640 641 7.868415 GTGTGGAAGAGTAGATAGCGATAAATT 59.132 37.037 0.00 0.00 0.00 1.82
641 642 7.867909 TGTGGAAGAGTAGATAGCGATAAATTG 59.132 37.037 0.00 0.00 0.00 2.32
642 643 6.868864 TGGAAGAGTAGATAGCGATAAATTGC 59.131 38.462 0.00 0.00 37.46 3.56
643 644 6.311690 GGAAGAGTAGATAGCGATAAATTGCC 59.688 42.308 0.00 0.00 37.94 4.52
644 645 6.346477 AGAGTAGATAGCGATAAATTGCCA 57.654 37.500 0.00 0.00 37.94 4.92
645 646 6.393990 AGAGTAGATAGCGATAAATTGCCAG 58.606 40.000 0.00 0.00 37.94 4.85
646 647 4.932200 AGTAGATAGCGATAAATTGCCAGC 59.068 41.667 0.00 0.00 37.94 4.85
647 648 3.077359 AGATAGCGATAAATTGCCAGCC 58.923 45.455 0.00 0.00 37.94 4.85
648 649 1.225855 TAGCGATAAATTGCCAGCCG 58.774 50.000 0.00 0.00 37.94 5.52
649 650 0.748005 AGCGATAAATTGCCAGCCGT 60.748 50.000 0.00 0.00 37.94 5.68
650 651 0.100503 GCGATAAATTGCCAGCCGTT 59.899 50.000 0.00 0.00 0.00 4.44
651 652 1.859998 GCGATAAATTGCCAGCCGTTC 60.860 52.381 0.00 0.00 0.00 3.95
652 653 1.268539 CGATAAATTGCCAGCCGTTCC 60.269 52.381 0.00 0.00 0.00 3.62
653 654 1.748493 GATAAATTGCCAGCCGTTCCA 59.252 47.619 0.00 0.00 0.00 3.53
654 655 0.885196 TAAATTGCCAGCCGTTCCAC 59.115 50.000 0.00 0.00 0.00 4.02
655 656 2.141122 AAATTGCCAGCCGTTCCACG 62.141 55.000 0.00 0.00 42.11 4.94
664 665 3.550656 CGTTCCACGGTTGAGAGC 58.449 61.111 0.00 0.00 38.08 4.09
673 674 4.373116 GTTGAGAGCGCCCGACCA 62.373 66.667 2.29 0.00 0.00 4.02
674 675 4.069232 TTGAGAGCGCCCGACCAG 62.069 66.667 2.29 0.00 0.00 4.00
677 678 4.753662 AGAGCGCCCGACCAGGTA 62.754 66.667 2.29 0.00 38.74 3.08
678 679 4.208686 GAGCGCCCGACCAGGTAG 62.209 72.222 2.29 0.00 38.74 3.18
681 682 4.814294 CGCCCGACCAGGTAGCAC 62.814 72.222 8.96 0.00 38.74 4.40
682 683 4.468689 GCCCGACCAGGTAGCACC 62.469 72.222 0.00 0.00 38.99 5.01
691 692 3.391382 GGTAGCACCTGGCCGACT 61.391 66.667 0.00 0.00 46.50 4.18
692 693 2.184579 GTAGCACCTGGCCGACTC 59.815 66.667 0.00 0.00 46.50 3.36
693 694 3.449227 TAGCACCTGGCCGACTCG 61.449 66.667 0.00 0.00 46.50 4.18
696 697 3.991051 CACCTGGCCGACTCGTGT 61.991 66.667 0.00 0.00 0.00 4.49
697 698 2.282674 ACCTGGCCGACTCGTGTA 60.283 61.111 0.00 0.00 0.00 2.90
698 699 2.341101 ACCTGGCCGACTCGTGTAG 61.341 63.158 0.00 0.00 0.00 2.74
699 700 2.202623 CTGGCCGACTCGTGTAGC 60.203 66.667 0.00 4.07 0.00 3.58
700 701 4.111016 TGGCCGACTCGTGTAGCG 62.111 66.667 0.00 0.05 43.01 4.26
702 703 2.576317 GCCGACTCGTGTAGCGAC 60.576 66.667 0.00 0.00 45.68 5.19
703 704 3.036783 GCCGACTCGTGTAGCGACT 62.037 63.158 0.00 0.00 45.68 4.18
704 705 1.226046 CCGACTCGTGTAGCGACTG 60.226 63.158 0.00 0.00 45.68 3.51
705 706 1.226046 CGACTCGTGTAGCGACTGG 60.226 63.158 0.00 0.00 45.68 4.00
706 707 1.136984 GACTCGTGTAGCGACTGGG 59.863 63.158 0.00 0.00 45.68 4.45
707 708 2.267681 GACTCGTGTAGCGACTGGGG 62.268 65.000 0.00 0.00 45.68 4.96
708 709 3.064987 CTCGTGTAGCGACTGGGGG 62.065 68.421 0.00 0.00 45.68 5.40
729 730 4.292178 GGATCGAGCGGCCAGGAG 62.292 72.222 2.24 0.00 0.00 3.69
730 731 4.959596 GATCGAGCGGCCAGGAGC 62.960 72.222 2.24 0.00 42.60 4.70
747 748 2.811317 CCAGCCGCTCGTTGTCTC 60.811 66.667 0.00 0.00 0.00 3.36
748 749 2.259818 CAGCCGCTCGTTGTCTCT 59.740 61.111 0.00 0.00 0.00 3.10
749 750 1.506718 CAGCCGCTCGTTGTCTCTA 59.493 57.895 0.00 0.00 0.00 2.43
750 751 0.109272 CAGCCGCTCGTTGTCTCTAA 60.109 55.000 0.00 0.00 0.00 2.10
751 752 0.601558 AGCCGCTCGTTGTCTCTAAA 59.398 50.000 0.00 0.00 0.00 1.85
752 753 1.204941 AGCCGCTCGTTGTCTCTAAAT 59.795 47.619 0.00 0.00 0.00 1.40
753 754 2.426024 AGCCGCTCGTTGTCTCTAAATA 59.574 45.455 0.00 0.00 0.00 1.40
754 755 2.789893 GCCGCTCGTTGTCTCTAAATAG 59.210 50.000 0.00 0.00 0.00 1.73
755 756 3.734293 GCCGCTCGTTGTCTCTAAATAGT 60.734 47.826 0.00 0.00 0.00 2.12
756 757 3.791887 CCGCTCGTTGTCTCTAAATAGTG 59.208 47.826 0.00 0.00 0.00 2.74
757 758 3.240861 CGCTCGTTGTCTCTAAATAGTGC 59.759 47.826 0.00 0.00 0.00 4.40
758 759 3.240861 GCTCGTTGTCTCTAAATAGTGCG 59.759 47.826 0.00 0.00 0.00 5.34
759 760 4.413087 CTCGTTGTCTCTAAATAGTGCGT 58.587 43.478 0.00 0.00 0.00 5.24
760 761 5.550232 TCGTTGTCTCTAAATAGTGCGTA 57.450 39.130 0.00 0.00 0.00 4.42
761 762 6.127810 TCGTTGTCTCTAAATAGTGCGTAT 57.872 37.500 0.00 0.00 0.00 3.06
762 763 5.969435 TCGTTGTCTCTAAATAGTGCGTATG 59.031 40.000 0.00 0.00 0.00 2.39
763 764 5.331607 CGTTGTCTCTAAATAGTGCGTATGC 60.332 44.000 0.00 0.00 43.20 3.14
780 781 7.665080 GCGTATGCACTTTTTAGATTTTAGG 57.335 36.000 0.89 0.00 42.15 2.69
810 811 3.081061 ACGCCAATTGTCATCAGCTTTA 58.919 40.909 4.43 0.00 0.00 1.85
811 812 3.127548 ACGCCAATTGTCATCAGCTTTAG 59.872 43.478 4.43 0.00 0.00 1.85
812 813 3.127548 CGCCAATTGTCATCAGCTTTAGT 59.872 43.478 4.43 0.00 0.00 2.24
866 867 2.104281 GGATAGAACGTGGGCCTACATT 59.896 50.000 20.31 10.73 0.00 2.71
921 922 2.037238 ATCCCCCAATCCTCCCCC 60.037 66.667 0.00 0.00 0.00 5.40
1077 1155 3.371097 GAATCACCGCTCGCCTCCA 62.371 63.158 0.00 0.00 0.00 3.86
1164 1242 0.623723 ACACCCATTTAGTCGCCCAT 59.376 50.000 0.00 0.00 0.00 4.00
1298 1487 1.076339 CGGAGGAAGAGGAGGAGCT 60.076 63.158 0.00 0.00 0.00 4.09
1397 1586 1.062525 GTAGAAATGCAAGCCGCCG 59.937 57.895 0.00 0.00 41.33 6.46
1406 1595 1.669760 CAAGCCGCCGGTCAAGTTA 60.670 57.895 4.45 0.00 0.00 2.24
1410 1599 2.264794 CGCCGGTCAAGTTAGGCT 59.735 61.111 1.90 0.00 46.85 4.58
1411 1600 2.100631 CGCCGGTCAAGTTAGGCTG 61.101 63.158 1.90 0.00 46.85 4.85
1440 1629 1.948611 GCGGTGGAGAAATGCAGGTAA 60.949 52.381 0.00 0.00 0.00 2.85
1445 1634 3.500680 GTGGAGAAATGCAGGTAACGAAA 59.499 43.478 0.00 0.00 46.39 3.46
1451 1640 1.890876 TGCAGGTAACGAAACAGCAT 58.109 45.000 0.00 0.00 46.39 3.79
1454 1643 1.135689 CAGGTAACGAAACAGCATGCC 60.136 52.381 15.66 0.00 41.68 4.40
1455 1644 0.878416 GGTAACGAAACAGCATGCCA 59.122 50.000 15.66 0.00 42.53 4.92
1456 1645 1.472480 GGTAACGAAACAGCATGCCAT 59.528 47.619 15.66 0.00 42.53 4.40
1485 1678 9.965902 AGGGGTATCATTTCTTAGCTTAATATG 57.034 33.333 0.00 0.00 0.00 1.78
1538 1731 3.733337 AGTTGTCTGTTGAGTTGCTAGG 58.267 45.455 0.00 0.00 0.00 3.02
1602 1795 8.560576 AACATATATTGTGAATTTAGCAACGC 57.439 30.769 0.00 0.00 38.99 4.84
1606 1799 9.748708 ATATATTGTGAATTTAGCAACGCAAAT 57.251 25.926 0.00 0.00 36.58 2.32
1650 1844 5.596361 TGAGGTTCAGATAGGAGAAGATGTC 59.404 44.000 0.00 0.00 0.00 3.06
1651 1845 5.776358 AGGTTCAGATAGGAGAAGATGTCT 58.224 41.667 0.00 0.00 40.25 3.41
1704 1898 0.037326 TGCGTGAATGGAGTCTGGTC 60.037 55.000 0.00 0.00 0.00 4.02
1709 1903 2.028930 GTGAATGGAGTCTGGTCGTTCT 60.029 50.000 0.00 0.00 0.00 3.01
1714 1908 1.343465 GGAGTCTGGTCGTTCTTTGGA 59.657 52.381 0.00 0.00 0.00 3.53
1724 1918 5.411361 TGGTCGTTCTTTGGATTTCTGTATG 59.589 40.000 0.00 0.00 0.00 2.39
2130 2328 8.219178 TCCCCATGTAAGTTGAGTTTACTTAAA 58.781 33.333 0.00 0.00 39.17 1.52
2161 2360 7.700656 CGAGTTTTTCATTTAATGTGGATACCC 59.299 37.037 4.77 0.00 0.00 3.69
2164 2363 7.654022 TTTTCATTTAATGTGGATACCCTCC 57.346 36.000 4.77 0.00 45.19 4.30
2240 2440 9.573133 CATTTATGTGTATCTTTTGTTCCCTTC 57.427 33.333 0.00 0.00 0.00 3.46
2325 2528 9.897744 CAACATGTGTATATGAAACTTTTGAGT 57.102 29.630 0.00 0.00 0.00 3.41
2347 2550 1.468520 CGTTGGCCTTCACATACTTGG 59.531 52.381 3.32 0.00 0.00 3.61
2447 2854 4.327680 AGCACCCAAGATACTTTTCTCAC 58.672 43.478 0.00 0.00 0.00 3.51
2850 4117 1.348064 TTCCCTCGGTCACTGTTCAT 58.652 50.000 0.00 0.00 0.00 2.57
3290 5411 4.141711 GGGGTGTAATATGCACTTCTCTCA 60.142 45.833 9.60 0.00 37.07 3.27
3296 5417 7.907045 GTGTAATATGCACTTCTCTCATGTTTG 59.093 37.037 0.00 0.00 34.30 2.93
3340 5461 5.391523 GCTCAAAATGCATTACTTACGTCCA 60.392 40.000 13.39 0.00 0.00 4.02
3344 5465 7.334671 TCAAAATGCATTACTTACGTCCATACA 59.665 33.333 13.39 0.00 0.00 2.29
3361 5482 5.584649 TCCATACAGAAGAGGCAAATTTACG 59.415 40.000 0.00 0.00 0.00 3.18
3408 5529 8.843308 TTGGAATTTTCTATGAAGGATTGGAT 57.157 30.769 0.00 0.00 0.00 3.41
3579 6170 9.337396 ACTCTTATTCTACTCACTACTCAGATG 57.663 37.037 0.00 0.00 0.00 2.90
3613 6204 7.308770 CCAACTTACAAATGCTCTCATTTCTGA 60.309 37.037 0.73 0.00 46.79 3.27
3839 6438 1.134098 ACCAAACACTGTCCAGACTGG 60.134 52.381 15.99 15.99 39.43 4.00
3852 6464 0.617413 AGACTGGATCCCTGCAACAG 59.383 55.000 9.90 0.00 35.40 3.16
4005 6618 6.495181 TCTCAACCTTCAAGTGAGATTAGACT 59.505 38.462 4.03 0.00 31.57 3.24
4042 6655 3.616956 AGCATGTCGATTTCTCCTTGA 57.383 42.857 0.00 0.00 0.00 3.02
4233 7016 3.446873 TGATGATGTTTATTGCGCCCTTT 59.553 39.130 4.18 0.00 0.00 3.11
4270 7053 1.133792 CCACCAGAGTCCCAACTGTTT 60.134 52.381 0.00 0.00 35.28 2.83
4271 7054 2.654863 CACCAGAGTCCCAACTGTTTT 58.345 47.619 0.00 0.00 35.28 2.43
4272 7055 3.023832 CACCAGAGTCCCAACTGTTTTT 58.976 45.455 0.00 0.00 35.28 1.94
4295 7078 1.981256 TTTGAAAGGCACCAGAGTCC 58.019 50.000 0.00 0.00 0.00 3.85
4296 7079 0.110486 TTGAAAGGCACCAGAGTCCC 59.890 55.000 0.00 0.00 0.00 4.46
4297 7080 1.059584 TGAAAGGCACCAGAGTCCCA 61.060 55.000 0.00 0.00 0.00 4.37
4298 7081 0.110486 GAAAGGCACCAGAGTCCCAA 59.890 55.000 0.00 0.00 0.00 4.12
4300 7083 1.062488 AAGGCACCAGAGTCCCAACT 61.062 55.000 0.00 0.00 38.88 3.16
4302 7085 1.451936 GCACCAGAGTCCCAACTGT 59.548 57.895 0.00 0.00 35.28 3.55
4303 7086 0.179018 GCACCAGAGTCCCAACTGTT 60.179 55.000 0.00 0.00 35.28 3.16
4420 7203 3.303791 GGTTGAAGTTTTCTGCAGTACCG 60.304 47.826 14.67 0.00 36.73 4.02
4437 7220 1.178534 CCGCTGGTTGGTTTGATGGT 61.179 55.000 0.00 0.00 0.00 3.55
4480 7266 3.006247 CTCTCCAGCTTAGGAAACTTGC 58.994 50.000 0.00 0.00 43.67 4.01
4484 7271 2.508526 CAGCTTAGGAAACTTGCACCT 58.491 47.619 0.00 0.00 43.67 4.00
4587 7384 7.801716 AACACAATAAAGTTTCACTCAGCTA 57.198 32.000 0.00 0.00 0.00 3.32
4590 7388 7.880195 ACACAATAAAGTTTCACTCAGCTAGAT 59.120 33.333 0.00 0.00 0.00 1.98
4600 7398 9.579768 GTTTCACTCAGCTAGATATATGTATGG 57.420 37.037 0.00 0.00 0.00 2.74
4607 7405 7.015001 TCAGCTAGATATATGTATGGCATGGAG 59.985 40.741 10.98 0.00 38.47 3.86
4609 7407 6.042552 GCTAGATATATGTATGGCATGGAGGT 59.957 42.308 10.98 0.00 38.47 3.85
4614 7412 3.668141 TGTATGGCATGGAGGTTTCAT 57.332 42.857 10.98 0.00 0.00 2.57
4622 7420 3.973657 CATGGAGGTTTCATGCTATTGC 58.026 45.455 0.00 0.00 36.09 3.56
4675 7481 6.455360 TTTGCTGGACCATCTATGATTTTC 57.545 37.500 0.00 0.00 0.00 2.29
4676 7482 5.114764 TGCTGGACCATCTATGATTTTCA 57.885 39.130 0.00 0.00 0.00 2.69
4684 7490 7.939039 GGACCATCTATGATTTTCATACTGGAA 59.061 37.037 18.97 0.00 38.30 3.53
4685 7491 9.512588 GACCATCTATGATTTTCATACTGGAAT 57.487 33.333 18.97 6.41 38.30 3.01
4686 7492 9.512588 ACCATCTATGATTTTCATACTGGAATC 57.487 33.333 18.97 0.00 38.30 2.52
4687 7493 9.736414 CCATCTATGATTTTCATACTGGAATCT 57.264 33.333 12.13 0.00 38.30 2.40
4689 7495 9.736414 ATCTATGATTTTCATACTGGAATCTGG 57.264 33.333 0.00 0.00 38.26 3.86
4690 7496 8.937835 TCTATGATTTTCATACTGGAATCTGGA 58.062 33.333 0.00 0.00 38.26 3.86
4691 7497 9.217278 CTATGATTTTCATACTGGAATCTGGAG 57.783 37.037 0.00 0.00 38.26 3.86
4692 7498 6.359804 TGATTTTCATACTGGAATCTGGAGG 58.640 40.000 0.00 0.00 31.48 4.30
4693 7499 4.778213 TTTCATACTGGAATCTGGAGGG 57.222 45.455 0.00 0.00 0.00 4.30
4694 7500 3.421394 TCATACTGGAATCTGGAGGGT 57.579 47.619 0.00 0.00 0.00 4.34
4695 7501 3.736094 TCATACTGGAATCTGGAGGGTT 58.264 45.455 0.00 0.00 0.00 4.11
4696 7502 3.455910 TCATACTGGAATCTGGAGGGTTG 59.544 47.826 0.00 0.00 0.00 3.77
4697 7503 2.044793 ACTGGAATCTGGAGGGTTGA 57.955 50.000 0.00 0.00 0.00 3.18
4698 7504 1.912043 ACTGGAATCTGGAGGGTTGAG 59.088 52.381 0.00 0.00 0.00 3.02
4699 7505 0.620556 TGGAATCTGGAGGGTTGAGC 59.379 55.000 0.00 0.00 0.00 4.26
4700 7506 0.106967 GGAATCTGGAGGGTTGAGCC 60.107 60.000 0.00 0.00 0.00 4.70
4701 7507 0.915364 GAATCTGGAGGGTTGAGCCT 59.085 55.000 0.50 0.50 37.43 4.58
4702 7508 2.119495 GAATCTGGAGGGTTGAGCCTA 58.881 52.381 1.01 0.00 37.43 3.93
4703 7509 1.501582 ATCTGGAGGGTTGAGCCTAC 58.498 55.000 4.47 4.47 37.43 3.18
4704 7510 0.413832 TCTGGAGGGTTGAGCCTACT 59.586 55.000 12.40 0.00 37.43 2.57
4705 7511 1.203313 TCTGGAGGGTTGAGCCTACTT 60.203 52.381 12.40 0.00 37.43 2.24
4706 7512 0.984230 TGGAGGGTTGAGCCTACTTG 59.016 55.000 12.40 0.00 37.43 3.16
4707 7513 0.253327 GGAGGGTTGAGCCTACTTGG 59.747 60.000 4.18 0.00 37.43 3.61
4708 7514 0.984995 GAGGGTTGAGCCTACTTGGT 59.015 55.000 1.01 0.00 38.35 3.67
4709 7515 2.185387 GAGGGTTGAGCCTACTTGGTA 58.815 52.381 1.01 0.00 38.35 3.25
4710 7516 2.168728 GAGGGTTGAGCCTACTTGGTAG 59.831 54.545 1.01 0.00 38.35 3.18
4711 7517 1.407025 GGGTTGAGCCTACTTGGTAGC 60.407 57.143 0.00 0.00 35.06 3.58
4712 7518 1.278127 GGTTGAGCCTACTTGGTAGCA 59.722 52.381 0.00 0.00 35.06 3.49
4720 7526 2.484417 CCTACTTGGTAGCAGCATCCAG 60.484 54.545 8.29 6.34 35.06 3.86
4721 7527 0.254178 ACTTGGTAGCAGCATCCAGG 59.746 55.000 13.71 13.71 35.04 4.45
4722 7528 0.543277 CTTGGTAGCAGCATCCAGGA 59.457 55.000 10.96 0.00 31.35 3.86
4731 7537 2.242043 CAGCATCCAGGACCAAGTTTT 58.758 47.619 0.00 0.00 0.00 2.43
4733 7539 3.826157 CAGCATCCAGGACCAAGTTTTAA 59.174 43.478 0.00 0.00 0.00 1.52
4734 7540 4.082125 AGCATCCAGGACCAAGTTTTAAG 58.918 43.478 0.00 0.00 0.00 1.85
4735 7541 3.826729 GCATCCAGGACCAAGTTTTAAGT 59.173 43.478 0.00 0.00 0.00 2.24
4737 7543 5.475564 GCATCCAGGACCAAGTTTTAAGTTA 59.524 40.000 0.00 0.00 0.00 2.24
4738 7544 6.349363 GCATCCAGGACCAAGTTTTAAGTTAG 60.349 42.308 0.00 0.00 0.00 2.34
4739 7545 5.627135 TCCAGGACCAAGTTTTAAGTTAGG 58.373 41.667 0.00 0.00 0.00 2.69
4740 7546 4.765339 CCAGGACCAAGTTTTAAGTTAGGG 59.235 45.833 0.00 0.00 0.00 3.53
4741 7547 5.457052 CCAGGACCAAGTTTTAAGTTAGGGA 60.457 44.000 0.00 0.00 0.00 4.20
4783 7590 5.635417 AGGCAAAGATTAGCTCTTGTTTC 57.365 39.130 0.00 0.00 43.60 2.78
4816 7623 2.676342 CAATAACTGGGTCCTACGTTGC 59.324 50.000 0.00 0.00 0.00 4.17
4821 7628 0.981183 TGGGTCCTACGTTGCTGATT 59.019 50.000 0.00 0.00 0.00 2.57
4837 7644 4.562789 TGCTGATTTTCTCGTGTCTTATCG 59.437 41.667 0.00 0.00 0.00 2.92
4838 7645 4.549107 GCTGATTTTCTCGTGTCTTATCGC 60.549 45.833 0.00 0.00 0.00 4.58
4875 7682 4.859304 TTGAAAACCTCGTCAGCTACTA 57.141 40.909 0.00 0.00 0.00 1.82
4936 7743 5.631026 ACAATAAGAGCAACAAATACTGCG 58.369 37.500 0.00 0.00 43.51 5.18
4985 7792 9.113876 GAACGAAAGGGCAAATTATTATAATCG 57.886 33.333 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 6.266323 ACTACGTATTTCTGTATCTGCTGTG 58.734 40.000 0.00 0.00 0.00 3.66
103 104 6.452494 ACTACGTATTTCTGTATCTGCTGT 57.548 37.500 0.00 0.00 0.00 4.40
104 105 6.856938 GGTACTACGTATTTCTGTATCTGCTG 59.143 42.308 0.00 0.00 0.00 4.41
105 106 6.016443 GGGTACTACGTATTTCTGTATCTGCT 60.016 42.308 0.00 0.00 0.00 4.24
106 107 6.148264 GGGTACTACGTATTTCTGTATCTGC 58.852 44.000 0.00 0.00 0.00 4.26
107 108 7.268199 TGGGTACTACGTATTTCTGTATCTG 57.732 40.000 0.00 0.00 0.00 2.90
108 109 7.559170 ACTTGGGTACTACGTATTTCTGTATCT 59.441 37.037 0.00 0.00 0.00 1.98
109 110 7.710896 ACTTGGGTACTACGTATTTCTGTATC 58.289 38.462 0.00 0.00 0.00 2.24
110 111 7.651027 ACTTGGGTACTACGTATTTCTGTAT 57.349 36.000 0.00 0.00 0.00 2.29
111 112 7.985476 GTACTTGGGTACTACGTATTTCTGTA 58.015 38.462 0.00 0.00 43.45 2.74
112 113 5.990120 ACTTGGGTACTACGTATTTCTGT 57.010 39.130 0.00 0.00 0.00 3.41
125 126 4.952335 TCCTGCTTACTAGTACTTGGGTAC 59.048 45.833 0.00 0.00 46.18 3.34
126 127 4.952335 GTCCTGCTTACTAGTACTTGGGTA 59.048 45.833 0.00 0.00 0.00 3.69
127 128 3.768215 GTCCTGCTTACTAGTACTTGGGT 59.232 47.826 0.00 0.83 0.00 4.51
128 129 3.767673 TGTCCTGCTTACTAGTACTTGGG 59.232 47.826 0.00 3.75 0.00 4.12
129 130 4.678309 GCTGTCCTGCTTACTAGTACTTGG 60.678 50.000 0.00 3.39 0.00 3.61
130 131 4.158764 AGCTGTCCTGCTTACTAGTACTTG 59.841 45.833 0.00 0.59 40.93 3.16
131 132 4.345854 AGCTGTCCTGCTTACTAGTACTT 58.654 43.478 0.00 0.00 40.93 2.24
132 133 3.949113 GAGCTGTCCTGCTTACTAGTACT 59.051 47.826 0.91 0.00 44.17 2.73
133 134 3.242804 CGAGCTGTCCTGCTTACTAGTAC 60.243 52.174 0.91 0.00 44.17 2.73
134 135 2.943690 CGAGCTGTCCTGCTTACTAGTA 59.056 50.000 0.00 0.00 44.17 1.82
135 136 1.746220 CGAGCTGTCCTGCTTACTAGT 59.254 52.381 0.00 0.00 44.17 2.57
136 137 1.066303 CCGAGCTGTCCTGCTTACTAG 59.934 57.143 0.00 0.00 44.17 2.57
137 138 1.103803 CCGAGCTGTCCTGCTTACTA 58.896 55.000 0.00 0.00 44.17 1.82
138 139 0.612174 TCCGAGCTGTCCTGCTTACT 60.612 55.000 0.00 0.00 44.17 2.24
139 140 0.179124 CTCCGAGCTGTCCTGCTTAC 60.179 60.000 0.00 0.00 44.17 2.34
140 141 1.323271 CCTCCGAGCTGTCCTGCTTA 61.323 60.000 0.00 0.00 44.17 3.09
141 142 2.654079 CCTCCGAGCTGTCCTGCTT 61.654 63.158 0.00 0.00 44.17 3.91
143 144 2.430610 ATCCTCCGAGCTGTCCTGC 61.431 63.158 0.00 0.00 0.00 4.85
144 145 1.440893 CATCCTCCGAGCTGTCCTG 59.559 63.158 0.00 0.00 0.00 3.86
145 146 1.760086 CCATCCTCCGAGCTGTCCT 60.760 63.158 0.00 0.00 0.00 3.85
146 147 2.801631 CCCATCCTCCGAGCTGTCC 61.802 68.421 0.00 0.00 0.00 4.02
147 148 2.801631 CCCCATCCTCCGAGCTGTC 61.802 68.421 0.00 0.00 0.00 3.51
148 149 2.765807 CCCCATCCTCCGAGCTGT 60.766 66.667 0.00 0.00 0.00 4.40
149 150 2.370445 AACCCCATCCTCCGAGCTG 61.370 63.158 0.00 0.00 0.00 4.24
150 151 2.041265 AACCCCATCCTCCGAGCT 59.959 61.111 0.00 0.00 0.00 4.09
151 152 2.190578 CAACCCCATCCTCCGAGC 59.809 66.667 0.00 0.00 0.00 5.03
152 153 1.522569 GTCAACCCCATCCTCCGAG 59.477 63.158 0.00 0.00 0.00 4.63
153 154 1.993391 GGTCAACCCCATCCTCCGA 60.993 63.158 0.00 0.00 0.00 4.55
154 155 1.562672 AAGGTCAACCCCATCCTCCG 61.563 60.000 0.00 0.00 36.42 4.63
155 156 1.490910 CTAAGGTCAACCCCATCCTCC 59.509 57.143 0.00 0.00 36.42 4.30
156 157 1.490910 CCTAAGGTCAACCCCATCCTC 59.509 57.143 0.00 0.00 36.42 3.71
157 158 1.203570 ACCTAAGGTCAACCCCATCCT 60.204 52.381 0.00 0.00 36.42 3.24
158 159 1.064685 CACCTAAGGTCAACCCCATCC 60.065 57.143 0.00 0.00 31.02 3.51
159 160 1.682087 GCACCTAAGGTCAACCCCATC 60.682 57.143 0.00 0.00 31.02 3.51
160 161 0.331616 GCACCTAAGGTCAACCCCAT 59.668 55.000 0.00 0.00 31.02 4.00
161 162 0.770557 AGCACCTAAGGTCAACCCCA 60.771 55.000 0.00 0.00 31.02 4.96
162 163 0.404426 AAGCACCTAAGGTCAACCCC 59.596 55.000 0.00 0.00 31.02 4.95
163 164 1.534729 CAAGCACCTAAGGTCAACCC 58.465 55.000 0.00 0.00 31.02 4.11
164 165 1.073284 TCCAAGCACCTAAGGTCAACC 59.927 52.381 0.00 0.00 31.02 3.77
165 166 2.224548 ACTCCAAGCACCTAAGGTCAAC 60.225 50.000 0.00 0.00 31.02 3.18
166 167 2.054799 ACTCCAAGCACCTAAGGTCAA 58.945 47.619 0.00 0.00 31.02 3.18
167 168 1.347707 CACTCCAAGCACCTAAGGTCA 59.652 52.381 0.00 0.00 31.02 4.02
168 169 1.339151 CCACTCCAAGCACCTAAGGTC 60.339 57.143 0.00 0.00 31.02 3.85
169 170 0.693049 CCACTCCAAGCACCTAAGGT 59.307 55.000 0.00 0.00 35.62 3.50
170 171 0.984230 TCCACTCCAAGCACCTAAGG 59.016 55.000 0.00 0.00 0.00 2.69
171 172 1.673033 CGTCCACTCCAAGCACCTAAG 60.673 57.143 0.00 0.00 0.00 2.18
172 173 0.320374 CGTCCACTCCAAGCACCTAA 59.680 55.000 0.00 0.00 0.00 2.69
173 174 1.541310 CCGTCCACTCCAAGCACCTA 61.541 60.000 0.00 0.00 0.00 3.08
174 175 2.743718 CGTCCACTCCAAGCACCT 59.256 61.111 0.00 0.00 0.00 4.00
175 176 2.358737 CCGTCCACTCCAAGCACC 60.359 66.667 0.00 0.00 0.00 5.01
176 177 1.374758 CTCCGTCCACTCCAAGCAC 60.375 63.158 0.00 0.00 0.00 4.40
177 178 1.837051 ACTCCGTCCACTCCAAGCA 60.837 57.895 0.00 0.00 0.00 3.91
178 179 1.374758 CACTCCGTCCACTCCAAGC 60.375 63.158 0.00 0.00 0.00 4.01
179 180 1.293498 CCACTCCGTCCACTCCAAG 59.707 63.158 0.00 0.00 0.00 3.61
180 181 2.879233 GCCACTCCGTCCACTCCAA 61.879 63.158 0.00 0.00 0.00 3.53
181 182 2.435120 TAGCCACTCCGTCCACTCCA 62.435 60.000 0.00 0.00 0.00 3.86
182 183 1.255667 TTAGCCACTCCGTCCACTCC 61.256 60.000 0.00 0.00 0.00 3.85
183 184 0.824759 ATTAGCCACTCCGTCCACTC 59.175 55.000 0.00 0.00 0.00 3.51
184 185 0.824759 GATTAGCCACTCCGTCCACT 59.175 55.000 0.00 0.00 0.00 4.00
185 186 0.824759 AGATTAGCCACTCCGTCCAC 59.175 55.000 0.00 0.00 0.00 4.02
186 187 0.824109 CAGATTAGCCACTCCGTCCA 59.176 55.000 0.00 0.00 0.00 4.02
187 188 0.530870 GCAGATTAGCCACTCCGTCC 60.531 60.000 0.00 0.00 0.00 4.79
188 189 0.461961 AGCAGATTAGCCACTCCGTC 59.538 55.000 0.00 0.00 34.23 4.79
189 190 0.905357 AAGCAGATTAGCCACTCCGT 59.095 50.000 0.00 0.00 34.23 4.69
190 191 1.293924 CAAGCAGATTAGCCACTCCG 58.706 55.000 0.00 0.00 34.23 4.63
191 192 1.020437 GCAAGCAGATTAGCCACTCC 58.980 55.000 0.00 0.00 34.23 3.85
192 193 1.399791 GTGCAAGCAGATTAGCCACTC 59.600 52.381 0.00 0.00 34.23 3.51
193 194 1.004044 AGTGCAAGCAGATTAGCCACT 59.996 47.619 0.00 0.00 32.25 4.00
194 195 1.399791 GAGTGCAAGCAGATTAGCCAC 59.600 52.381 0.00 0.00 34.23 5.01
195 196 1.742761 GAGTGCAAGCAGATTAGCCA 58.257 50.000 0.00 0.00 34.23 4.75
196 197 0.654683 CGAGTGCAAGCAGATTAGCC 59.345 55.000 0.00 0.00 34.23 3.93
197 198 1.645034 TCGAGTGCAAGCAGATTAGC 58.355 50.000 0.00 0.00 0.00 3.09
198 199 3.061831 CAGTTCGAGTGCAAGCAGATTAG 59.938 47.826 0.00 0.00 0.00 1.73
199 200 2.995939 CAGTTCGAGTGCAAGCAGATTA 59.004 45.455 0.00 0.00 0.00 1.75
200 201 1.802960 CAGTTCGAGTGCAAGCAGATT 59.197 47.619 0.00 0.00 0.00 2.40
201 202 1.436600 CAGTTCGAGTGCAAGCAGAT 58.563 50.000 0.00 0.00 0.00 2.90
202 203 0.601046 CCAGTTCGAGTGCAAGCAGA 60.601 55.000 0.00 0.00 0.00 4.26
203 204 1.864862 CCAGTTCGAGTGCAAGCAG 59.135 57.895 0.00 0.00 0.00 4.24
204 205 2.253758 GCCAGTTCGAGTGCAAGCA 61.254 57.895 0.00 0.00 0.00 3.91
205 206 2.558313 GCCAGTTCGAGTGCAAGC 59.442 61.111 0.00 0.00 0.00 4.01
206 207 1.664649 TCGCCAGTTCGAGTGCAAG 60.665 57.895 0.00 0.00 34.09 4.01
207 208 1.954146 GTCGCCAGTTCGAGTGCAA 60.954 57.895 0.00 0.00 39.34 4.08
208 209 2.355837 GTCGCCAGTTCGAGTGCA 60.356 61.111 0.00 0.00 39.34 4.57
209 210 3.470567 CGTCGCCAGTTCGAGTGC 61.471 66.667 0.00 0.00 39.34 4.40
210 211 3.470567 GCGTCGCCAGTTCGAGTG 61.471 66.667 5.75 0.00 39.34 3.51
211 212 3.208884 AAGCGTCGCCAGTTCGAGT 62.209 57.895 14.86 0.00 39.34 4.18
212 213 2.430921 AAGCGTCGCCAGTTCGAG 60.431 61.111 14.86 0.00 39.34 4.04
213 214 2.733218 CAAGCGTCGCCAGTTCGA 60.733 61.111 14.86 0.00 35.95 3.71
214 215 4.430423 GCAAGCGTCGCCAGTTCG 62.430 66.667 14.86 0.00 0.00 3.95
245 246 2.828549 ACCAAATCGGCGATGGGC 60.829 61.111 29.78 0.00 38.58 5.36
246 247 3.420943 GACCAAATCGGCGATGGG 58.579 61.111 28.80 28.80 38.58 4.00
255 256 3.915437 TTTTTCTCTGGCGACCAAATC 57.085 42.857 0.00 0.00 30.80 2.17
275 276 1.839424 CCGCTCCCTTCTCCATTTTT 58.161 50.000 0.00 0.00 0.00 1.94
276 277 0.681243 GCCGCTCCCTTCTCCATTTT 60.681 55.000 0.00 0.00 0.00 1.82
277 278 1.077429 GCCGCTCCCTTCTCCATTT 60.077 57.895 0.00 0.00 0.00 2.32
278 279 2.592308 GCCGCTCCCTTCTCCATT 59.408 61.111 0.00 0.00 0.00 3.16
279 280 3.483869 GGCCGCTCCCTTCTCCAT 61.484 66.667 0.00 0.00 0.00 3.41
300 301 3.457625 CTCCCCTGCATCTGCTCCG 62.458 68.421 3.53 0.00 42.66 4.63
301 302 2.509916 CTCCCCTGCATCTGCTCC 59.490 66.667 3.53 0.00 42.66 4.70
302 303 2.203181 GCTCCCCTGCATCTGCTC 60.203 66.667 3.53 0.00 42.66 4.26
303 304 4.172512 CGCTCCCCTGCATCTGCT 62.173 66.667 3.53 0.00 42.66 4.24
319 320 4.530857 GATGAGGTGTCCCCGGCG 62.531 72.222 0.00 0.00 38.74 6.46
320 321 4.530857 CGATGAGGTGTCCCCGGC 62.531 72.222 0.00 0.00 38.74 6.13
321 322 1.755395 TACGATGAGGTGTCCCCGG 60.755 63.158 0.00 0.00 38.74 5.73
322 323 1.035932 AGTACGATGAGGTGTCCCCG 61.036 60.000 0.00 0.00 38.74 5.73
323 324 0.460311 CAGTACGATGAGGTGTCCCC 59.540 60.000 0.00 0.00 0.00 4.81
324 325 0.460311 CCAGTACGATGAGGTGTCCC 59.540 60.000 0.00 0.00 0.00 4.46
325 326 1.471119 TCCAGTACGATGAGGTGTCC 58.529 55.000 0.00 0.00 0.00 4.02
326 327 2.753452 TCTTCCAGTACGATGAGGTGTC 59.247 50.000 0.00 0.00 0.00 3.67
327 328 2.755655 CTCTTCCAGTACGATGAGGTGT 59.244 50.000 0.00 0.00 32.86 4.16
328 329 2.480416 GCTCTTCCAGTACGATGAGGTG 60.480 54.545 12.47 3.80 35.57 4.00
329 330 1.751924 GCTCTTCCAGTACGATGAGGT 59.248 52.381 12.47 0.00 35.57 3.85
330 331 2.028130 AGCTCTTCCAGTACGATGAGG 58.972 52.381 12.47 2.06 35.57 3.86
331 332 2.685388 TCAGCTCTTCCAGTACGATGAG 59.315 50.000 8.44 8.44 37.20 2.90
332 333 2.723273 TCAGCTCTTCCAGTACGATGA 58.277 47.619 0.00 0.00 0.00 2.92
333 334 3.637432 GATCAGCTCTTCCAGTACGATG 58.363 50.000 0.00 0.00 0.00 3.84
334 335 2.292016 CGATCAGCTCTTCCAGTACGAT 59.708 50.000 0.00 0.00 0.00 3.73
335 336 1.671328 CGATCAGCTCTTCCAGTACGA 59.329 52.381 0.00 0.00 0.00 3.43
336 337 1.671328 TCGATCAGCTCTTCCAGTACG 59.329 52.381 0.00 0.00 0.00 3.67
337 338 2.542824 GCTCGATCAGCTCTTCCAGTAC 60.543 54.545 9.16 0.00 45.83 2.73
338 339 1.678627 GCTCGATCAGCTCTTCCAGTA 59.321 52.381 9.16 0.00 45.83 2.74
339 340 0.459489 GCTCGATCAGCTCTTCCAGT 59.541 55.000 9.16 0.00 45.83 4.00
340 341 3.271142 GCTCGATCAGCTCTTCCAG 57.729 57.895 9.16 0.00 45.83 3.86
348 349 2.006587 GAGTACGCGCTCGATCAGC 61.007 63.158 5.73 6.98 45.85 4.26
349 350 1.369448 GGAGTACGCGCTCGATCAG 60.369 63.158 5.73 0.00 39.41 2.90
350 351 1.444917 ATGGAGTACGCGCTCGATCA 61.445 55.000 5.73 0.00 39.41 2.92
351 352 0.726452 GATGGAGTACGCGCTCGATC 60.726 60.000 17.84 17.84 41.21 3.69
352 353 1.283181 GATGGAGTACGCGCTCGAT 59.717 57.895 5.73 8.60 36.79 3.59
353 354 2.713770 GATGGAGTACGCGCTCGA 59.286 61.111 5.73 3.03 39.41 4.04
354 355 2.353607 GGATGGAGTACGCGCTCG 60.354 66.667 5.73 0.00 42.43 5.03
355 356 1.299468 CTGGATGGAGTACGCGCTC 60.299 63.158 5.73 5.46 34.89 5.03
356 357 1.729470 CTCTGGATGGAGTACGCGCT 61.729 60.000 5.73 0.00 0.00 5.92
357 358 1.299468 CTCTGGATGGAGTACGCGC 60.299 63.158 5.73 0.00 0.00 6.86
358 359 1.299468 GCTCTGGATGGAGTACGCG 60.299 63.158 3.53 3.53 35.89 6.01
359 360 0.249238 CAGCTCTGGATGGAGTACGC 60.249 60.000 0.00 0.00 35.89 4.42
360 361 3.955291 CAGCTCTGGATGGAGTACG 57.045 57.895 0.00 0.00 35.89 3.67
371 372 1.153667 GAGGACGAAGCCAGCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
372 373 2.705821 CGAGGACGAAGCCAGCTCT 61.706 63.158 0.00 0.00 42.66 4.09
373 374 2.202676 CGAGGACGAAGCCAGCTC 60.203 66.667 0.00 0.00 42.66 4.09
374 375 2.676822 TCGAGGACGAAGCCAGCT 60.677 61.111 0.00 0.00 45.74 4.24
383 384 1.667154 TTGAGGCTGGATCGAGGACG 61.667 60.000 6.88 0.00 41.26 4.79
384 385 0.179097 GTTGAGGCTGGATCGAGGAC 60.179 60.000 6.88 0.00 0.00 3.85
385 386 0.614697 TGTTGAGGCTGGATCGAGGA 60.615 55.000 6.88 0.00 0.00 3.71
386 387 0.179089 CTGTTGAGGCTGGATCGAGG 60.179 60.000 6.88 0.00 0.00 4.63
387 388 0.820226 TCTGTTGAGGCTGGATCGAG 59.180 55.000 0.00 0.00 0.00 4.04
388 389 1.410517 GATCTGTTGAGGCTGGATCGA 59.589 52.381 0.00 0.00 0.00 3.59
389 390 1.863267 GATCTGTTGAGGCTGGATCG 58.137 55.000 0.00 0.00 0.00 3.69
390 391 1.539929 CCGATCTGTTGAGGCTGGATC 60.540 57.143 0.00 0.00 0.00 3.36
391 392 0.467384 CCGATCTGTTGAGGCTGGAT 59.533 55.000 0.00 0.00 0.00 3.41
392 393 0.614697 TCCGATCTGTTGAGGCTGGA 60.615 55.000 0.00 0.00 0.00 3.86
393 394 0.460987 GTCCGATCTGTTGAGGCTGG 60.461 60.000 0.00 0.00 0.00 4.85
394 395 0.247460 TGTCCGATCTGTTGAGGCTG 59.753 55.000 0.00 0.00 0.00 4.85
395 396 0.247736 GTGTCCGATCTGTTGAGGCT 59.752 55.000 0.00 0.00 0.00 4.58
396 397 1.078759 CGTGTCCGATCTGTTGAGGC 61.079 60.000 0.00 0.00 35.63 4.70
397 398 0.458543 CCGTGTCCGATCTGTTGAGG 60.459 60.000 0.00 0.00 35.63 3.86
398 399 0.458543 CCCGTGTCCGATCTGTTGAG 60.459 60.000 0.00 0.00 35.63 3.02
399 400 1.183030 ACCCGTGTCCGATCTGTTGA 61.183 55.000 0.00 0.00 35.63 3.18
400 401 1.014044 CACCCGTGTCCGATCTGTTG 61.014 60.000 0.00 0.00 35.63 3.33
401 402 1.292223 CACCCGTGTCCGATCTGTT 59.708 57.895 0.00 0.00 35.63 3.16
402 403 2.646175 CCACCCGTGTCCGATCTGT 61.646 63.158 0.00 0.00 35.63 3.41
403 404 2.184322 CCACCCGTGTCCGATCTG 59.816 66.667 0.00 0.00 35.63 2.90
404 405 2.503846 TACCCACCCGTGTCCGATCT 62.504 60.000 0.00 0.00 35.63 2.75
405 406 2.053865 TACCCACCCGTGTCCGATC 61.054 63.158 0.00 0.00 35.63 3.69
406 407 2.037687 TACCCACCCGTGTCCGAT 59.962 61.111 0.00 0.00 35.63 4.18
407 408 2.990967 GTACCCACCCGTGTCCGA 60.991 66.667 0.00 0.00 35.63 4.55
408 409 3.304721 TGTACCCACCCGTGTCCG 61.305 66.667 0.00 0.00 0.00 4.79
409 410 2.344872 GTGTACCCACCCGTGTCC 59.655 66.667 0.00 0.00 35.44 4.02
410 411 1.005394 CTGTGTACCCACCCGTGTC 60.005 63.158 0.00 0.00 41.09 3.67
411 412 2.513259 CCTGTGTACCCACCCGTGT 61.513 63.158 0.00 0.00 41.09 4.49
412 413 2.345991 CCTGTGTACCCACCCGTG 59.654 66.667 0.00 0.00 41.09 4.94
413 414 3.633116 GCCTGTGTACCCACCCGT 61.633 66.667 0.00 0.00 41.09 5.28
414 415 4.404098 GGCCTGTGTACCCACCCG 62.404 72.222 0.00 0.00 41.09 5.28
415 416 3.253838 TGGCCTGTGTACCCACCC 61.254 66.667 3.32 0.00 41.09 4.61
416 417 2.033602 GTGGCCTGTGTACCCACC 59.966 66.667 3.32 0.00 42.44 4.61
417 418 2.033602 GGTGGCCTGTGTACCCAC 59.966 66.667 3.32 9.13 46.40 4.61
418 419 3.632080 CGGTGGCCTGTGTACCCA 61.632 66.667 3.32 0.00 0.00 4.51
419 420 4.404098 CCGGTGGCCTGTGTACCC 62.404 72.222 3.32 0.00 0.00 3.69
420 421 2.193087 AATCCGGTGGCCTGTGTACC 62.193 60.000 3.32 0.74 0.00 3.34
421 422 0.322187 AAATCCGGTGGCCTGTGTAC 60.322 55.000 3.32 0.00 0.00 2.90
422 423 0.322098 CAAATCCGGTGGCCTGTGTA 60.322 55.000 3.32 0.00 0.00 2.90
423 424 1.603455 CAAATCCGGTGGCCTGTGT 60.603 57.895 3.32 0.00 0.00 3.72
424 425 0.680921 ATCAAATCCGGTGGCCTGTG 60.681 55.000 3.32 0.00 0.00 3.66
425 426 0.916086 TATCAAATCCGGTGGCCTGT 59.084 50.000 3.32 0.00 0.00 4.00
426 427 1.881973 CATATCAAATCCGGTGGCCTG 59.118 52.381 3.32 0.00 0.00 4.85
427 428 1.494721 ACATATCAAATCCGGTGGCCT 59.505 47.619 3.32 0.00 0.00 5.19
428 429 1.981256 ACATATCAAATCCGGTGGCC 58.019 50.000 0.00 0.00 0.00 5.36
429 430 3.119849 GCATACATATCAAATCCGGTGGC 60.120 47.826 0.00 0.00 0.00 5.01
430 431 3.125146 CGCATACATATCAAATCCGGTGG 59.875 47.826 0.00 0.00 0.00 4.61
431 432 3.993736 TCGCATACATATCAAATCCGGTG 59.006 43.478 0.00 0.00 0.00 4.94
432 433 4.245660 CTCGCATACATATCAAATCCGGT 58.754 43.478 0.00 0.00 0.00 5.28
433 434 3.062639 GCTCGCATACATATCAAATCCGG 59.937 47.826 0.00 0.00 0.00 5.14
434 435 3.241773 CGCTCGCATACATATCAAATCCG 60.242 47.826 0.00 0.00 0.00 4.18
435 436 3.062639 CCGCTCGCATACATATCAAATCC 59.937 47.826 0.00 0.00 0.00 3.01
436 437 3.484229 GCCGCTCGCATACATATCAAATC 60.484 47.826 0.00 0.00 37.47 2.17
437 438 2.416547 GCCGCTCGCATACATATCAAAT 59.583 45.455 0.00 0.00 37.47 2.32
438 439 1.798223 GCCGCTCGCATACATATCAAA 59.202 47.619 0.00 0.00 37.47 2.69
439 440 1.428448 GCCGCTCGCATACATATCAA 58.572 50.000 0.00 0.00 37.47 2.57
440 441 0.732538 CGCCGCTCGCATACATATCA 60.733 55.000 0.00 0.00 37.30 2.15
441 442 1.413767 CCGCCGCTCGCATACATATC 61.414 60.000 0.00 0.00 37.30 1.63
442 443 1.446099 CCGCCGCTCGCATACATAT 60.446 57.895 0.00 0.00 37.30 1.78
443 444 2.049526 CCGCCGCTCGCATACATA 60.050 61.111 0.00 0.00 37.30 2.29
456 457 4.899239 CTGGATCCAGACGCCGCC 62.899 72.222 34.54 0.00 46.30 6.13
458 459 3.842923 AGCTGGATCCAGACGCCG 61.843 66.667 40.29 18.07 46.30 6.46
459 460 2.202987 CAGCTGGATCCAGACGCC 60.203 66.667 40.29 24.27 46.30 5.68
460 461 1.227205 CTCAGCTGGATCCAGACGC 60.227 63.158 40.29 27.68 46.30 5.19
461 462 0.179116 CACTCAGCTGGATCCAGACG 60.179 60.000 40.29 29.28 46.30 4.18
462 463 0.177604 CCACTCAGCTGGATCCAGAC 59.822 60.000 40.29 30.08 46.30 3.51
463 464 1.620739 GCCACTCAGCTGGATCCAGA 61.621 60.000 40.29 21.86 46.30 3.86
464 465 1.153208 GCCACTCAGCTGGATCCAG 60.153 63.158 33.73 33.73 46.15 3.86
465 466 2.993008 GCCACTCAGCTGGATCCA 59.007 61.111 15.27 15.27 32.30 3.41
466 467 2.202987 CGCCACTCAGCTGGATCC 60.203 66.667 15.13 4.20 32.30 3.36
467 468 1.812922 CACGCCACTCAGCTGGATC 60.813 63.158 15.13 0.00 32.30 3.36
468 469 2.267006 CACGCCACTCAGCTGGAT 59.733 61.111 15.13 0.00 32.30 3.41
469 470 4.007644 CCACGCCACTCAGCTGGA 62.008 66.667 15.13 0.00 34.74 3.86
487 488 4.038080 CAAGTTGGGAACGGGCGC 62.038 66.667 0.00 0.00 36.23 6.53
488 489 4.038080 GCAAGTTGGGAACGGGCG 62.038 66.667 4.75 0.00 36.23 6.13
489 490 4.038080 CGCAAGTTGGGAACGGGC 62.038 66.667 14.44 0.00 36.23 6.13
490 491 3.361977 CCGCAAGTTGGGAACGGG 61.362 66.667 20.64 0.36 40.18 5.28
491 492 4.038080 GCCGCAAGTTGGGAACGG 62.038 66.667 20.64 16.70 46.50 4.44
492 493 4.383602 CGCCGCAAGTTGGGAACG 62.384 66.667 20.64 18.30 36.23 3.95
493 494 4.038080 CCGCCGCAAGTTGGGAAC 62.038 66.667 20.64 11.32 31.21 3.62
513 514 3.775654 CTCCACCCCTCTCACGCC 61.776 72.222 0.00 0.00 0.00 5.68
514 515 3.775654 CCTCCACCCCTCTCACGC 61.776 72.222 0.00 0.00 0.00 5.34
515 516 3.775654 GCCTCCACCCCTCTCACG 61.776 72.222 0.00 0.00 0.00 4.35
516 517 3.775654 CGCCTCCACCCCTCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
594 595 3.426117 CTTCGTCCCCATCCCGTCG 62.426 68.421 0.00 0.00 0.00 5.12
595 596 2.499685 CTTCGTCCCCATCCCGTC 59.500 66.667 0.00 0.00 0.00 4.79
596 597 3.081409 CCTTCGTCCCCATCCCGT 61.081 66.667 0.00 0.00 0.00 5.28
597 598 3.861797 CCCTTCGTCCCCATCCCG 61.862 72.222 0.00 0.00 0.00 5.14
598 599 2.691252 ACCCTTCGTCCCCATCCC 60.691 66.667 0.00 0.00 0.00 3.85
599 600 2.298661 ACACCCTTCGTCCCCATCC 61.299 63.158 0.00 0.00 0.00 3.51
600 601 1.078426 CACACCCTTCGTCCCCATC 60.078 63.158 0.00 0.00 0.00 3.51
601 602 2.602676 CCACACCCTTCGTCCCCAT 61.603 63.158 0.00 0.00 0.00 4.00
602 603 3.246112 CCACACCCTTCGTCCCCA 61.246 66.667 0.00 0.00 0.00 4.96
603 604 2.465055 CTTCCACACCCTTCGTCCCC 62.465 65.000 0.00 0.00 0.00 4.81
604 605 1.003718 CTTCCACACCCTTCGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
605 606 0.037232 CTCTTCCACACCCTTCGTCC 60.037 60.000 0.00 0.00 0.00 4.79
606 607 0.680061 ACTCTTCCACACCCTTCGTC 59.320 55.000 0.00 0.00 0.00 4.20
607 608 1.893801 CTACTCTTCCACACCCTTCGT 59.106 52.381 0.00 0.00 0.00 3.85
608 609 2.168496 TCTACTCTTCCACACCCTTCG 58.832 52.381 0.00 0.00 0.00 3.79
609 610 4.202172 GCTATCTACTCTTCCACACCCTTC 60.202 50.000 0.00 0.00 0.00 3.46
610 611 3.707102 GCTATCTACTCTTCCACACCCTT 59.293 47.826 0.00 0.00 0.00 3.95
611 612 3.301274 GCTATCTACTCTTCCACACCCT 58.699 50.000 0.00 0.00 0.00 4.34
612 613 2.034812 CGCTATCTACTCTTCCACACCC 59.965 54.545 0.00 0.00 0.00 4.61
613 614 2.950309 TCGCTATCTACTCTTCCACACC 59.050 50.000 0.00 0.00 0.00 4.16
614 615 4.839668 ATCGCTATCTACTCTTCCACAC 57.160 45.455 0.00 0.00 0.00 3.82
615 616 6.954487 TTTATCGCTATCTACTCTTCCACA 57.046 37.500 0.00 0.00 0.00 4.17
616 617 7.148722 GCAATTTATCGCTATCTACTCTTCCAC 60.149 40.741 0.00 0.00 0.00 4.02
617 618 6.868864 GCAATTTATCGCTATCTACTCTTCCA 59.131 38.462 0.00 0.00 0.00 3.53
618 619 6.311690 GGCAATTTATCGCTATCTACTCTTCC 59.688 42.308 0.00 0.00 0.00 3.46
619 620 6.868864 TGGCAATTTATCGCTATCTACTCTTC 59.131 38.462 0.00 0.00 0.00 2.87
620 621 6.759272 TGGCAATTTATCGCTATCTACTCTT 58.241 36.000 0.00 0.00 0.00 2.85
621 622 6.346477 TGGCAATTTATCGCTATCTACTCT 57.654 37.500 0.00 0.00 0.00 3.24
622 623 5.062809 GCTGGCAATTTATCGCTATCTACTC 59.937 44.000 0.00 0.00 0.00 2.59
623 624 4.932200 GCTGGCAATTTATCGCTATCTACT 59.068 41.667 0.00 0.00 0.00 2.57
624 625 4.093556 GGCTGGCAATTTATCGCTATCTAC 59.906 45.833 0.00 0.00 0.00 2.59
625 626 4.253685 GGCTGGCAATTTATCGCTATCTA 58.746 43.478 0.00 0.00 0.00 1.98
626 627 3.077359 GGCTGGCAATTTATCGCTATCT 58.923 45.455 0.00 0.00 0.00 1.98
627 628 2.159653 CGGCTGGCAATTTATCGCTATC 60.160 50.000 1.08 0.00 0.00 2.08
628 629 1.806542 CGGCTGGCAATTTATCGCTAT 59.193 47.619 1.08 0.00 0.00 2.97
629 630 1.225855 CGGCTGGCAATTTATCGCTA 58.774 50.000 1.08 0.00 0.00 4.26
630 631 0.748005 ACGGCTGGCAATTTATCGCT 60.748 50.000 1.08 0.00 0.00 4.93
631 632 0.100503 AACGGCTGGCAATTTATCGC 59.899 50.000 1.08 0.00 0.00 4.58
632 633 1.268539 GGAACGGCTGGCAATTTATCG 60.269 52.381 1.08 0.00 0.00 2.92
633 634 1.748493 TGGAACGGCTGGCAATTTATC 59.252 47.619 1.08 0.00 0.00 1.75
634 635 1.476488 GTGGAACGGCTGGCAATTTAT 59.524 47.619 1.08 0.00 0.00 1.40
635 636 0.885196 GTGGAACGGCTGGCAATTTA 59.115 50.000 1.08 0.00 0.00 1.40
636 637 1.665442 GTGGAACGGCTGGCAATTT 59.335 52.632 1.08 0.00 0.00 1.82
637 638 3.365535 GTGGAACGGCTGGCAATT 58.634 55.556 1.08 0.00 0.00 2.32
648 649 2.668280 GCGCTCTCAACCGTGGAAC 61.668 63.158 0.00 0.00 0.00 3.62
649 650 2.357034 GCGCTCTCAACCGTGGAA 60.357 61.111 0.00 0.00 0.00 3.53
650 651 4.373116 GGCGCTCTCAACCGTGGA 62.373 66.667 7.64 0.00 0.00 4.02
656 657 4.373116 TGGTCGGGCGCTCTCAAC 62.373 66.667 5.36 0.00 0.00 3.18
657 658 4.069232 CTGGTCGGGCGCTCTCAA 62.069 66.667 5.36 0.00 0.00 3.02
660 661 4.753662 TACCTGGTCGGGCGCTCT 62.754 66.667 5.36 0.00 36.97 4.09
661 662 4.208686 CTACCTGGTCGGGCGCTC 62.209 72.222 7.64 0.06 36.97 5.03
664 665 4.814294 GTGCTACCTGGTCGGGCG 62.814 72.222 0.63 0.00 36.97 6.13
665 666 4.468689 GGTGCTACCTGGTCGGGC 62.469 72.222 0.63 7.51 34.73 6.13
674 675 3.372554 GAGTCGGCCAGGTGCTACC 62.373 68.421 2.24 0.00 40.92 3.18
675 676 2.184579 GAGTCGGCCAGGTGCTAC 59.815 66.667 2.24 0.00 40.92 3.58
676 677 3.449227 CGAGTCGGCCAGGTGCTA 61.449 66.667 4.10 0.00 40.92 3.49
679 680 2.543687 CTACACGAGTCGGCCAGGTG 62.544 65.000 18.30 7.25 34.87 4.00
680 681 2.282674 TACACGAGTCGGCCAGGT 60.283 61.111 18.30 9.07 0.00 4.00
681 682 2.490217 CTACACGAGTCGGCCAGG 59.510 66.667 18.30 3.35 0.00 4.45
682 683 2.202623 GCTACACGAGTCGGCCAG 60.203 66.667 18.30 10.91 0.00 4.85
712 713 4.292178 CTCCTGGCCGCTCGATCC 62.292 72.222 0.00 0.00 0.00 3.36
713 714 4.959596 GCTCCTGGCCGCTCGATC 62.960 72.222 0.00 0.00 34.27 3.69
730 731 1.934220 TAGAGACAACGAGCGGCTGG 61.934 60.000 7.50 9.32 0.00 4.85
731 732 0.109272 TTAGAGACAACGAGCGGCTG 60.109 55.000 7.50 2.23 0.00 4.85
732 733 0.601558 TTTAGAGACAACGAGCGGCT 59.398 50.000 0.00 0.00 0.00 5.52
733 734 1.641577 ATTTAGAGACAACGAGCGGC 58.358 50.000 0.00 0.00 0.00 6.53
734 735 3.791887 CACTATTTAGAGACAACGAGCGG 59.208 47.826 0.00 0.00 0.00 5.52
735 736 3.240861 GCACTATTTAGAGACAACGAGCG 59.759 47.826 0.00 0.00 0.00 5.03
736 737 3.240861 CGCACTATTTAGAGACAACGAGC 59.759 47.826 0.00 0.00 0.00 5.03
737 738 4.413087 ACGCACTATTTAGAGACAACGAG 58.587 43.478 0.00 0.00 0.00 4.18
738 739 4.430137 ACGCACTATTTAGAGACAACGA 57.570 40.909 0.00 0.00 0.00 3.85
739 740 5.331607 GCATACGCACTATTTAGAGACAACG 60.332 44.000 0.00 0.00 38.36 4.10
740 741 5.518847 TGCATACGCACTATTTAGAGACAAC 59.481 40.000 0.00 0.00 45.36 3.32
741 742 5.656480 TGCATACGCACTATTTAGAGACAA 58.344 37.500 0.00 0.00 45.36 3.18
742 743 5.257082 TGCATACGCACTATTTAGAGACA 57.743 39.130 0.00 0.00 45.36 3.41
756 757 7.248437 ACCTAAAATCTAAAAAGTGCATACGC 58.752 34.615 0.00 0.00 39.24 4.42
757 758 9.620660 AAACCTAAAATCTAAAAAGTGCATACG 57.379 29.630 0.00 0.00 0.00 3.06
810 811 4.162320 ACGATCTGAACCATCCATTGTACT 59.838 41.667 0.00 0.00 0.00 2.73
811 812 4.442706 ACGATCTGAACCATCCATTGTAC 58.557 43.478 0.00 0.00 0.00 2.90
812 813 4.753516 ACGATCTGAACCATCCATTGTA 57.246 40.909 0.00 0.00 0.00 2.41
881 882 6.452494 TGAACGTTATCCTTTTTGTTGGAA 57.548 33.333 0.00 0.00 35.81 3.53
972 973 1.074775 AGGCGGGCAAAGATGTCAA 59.925 52.632 3.78 0.00 30.82 3.18
1029 1030 1.228154 GGGAAGAAGTGTGCCGGTT 60.228 57.895 1.90 0.00 0.00 4.44
1083 1161 2.433318 GAAAGCGCGAGGAGCTGT 60.433 61.111 12.10 0.00 45.31 4.40
1397 1586 4.321230 CCAACAATTCAGCCTAACTTGACC 60.321 45.833 0.00 0.00 0.00 4.02
1406 1595 1.228552 ACCGCCAACAATTCAGCCT 60.229 52.632 0.00 0.00 0.00 4.58
1410 1599 0.109532 TCTCCACCGCCAACAATTCA 59.890 50.000 0.00 0.00 0.00 2.57
1411 1600 1.243902 TTCTCCACCGCCAACAATTC 58.756 50.000 0.00 0.00 0.00 2.17
1440 1629 0.673333 TCGATGGCATGCTGTTTCGT 60.673 50.000 18.92 0.91 0.00 3.85
1445 1634 2.191375 CCCTCGATGGCATGCTGT 59.809 61.111 18.92 6.34 0.00 4.40
1451 1640 1.434188 AATGATACCCCTCGATGGCA 58.566 50.000 0.39 0.00 0.00 4.92
1454 1643 4.932200 GCTAAGAAATGATACCCCTCGATG 59.068 45.833 0.00 0.00 0.00 3.84
1455 1644 4.841246 AGCTAAGAAATGATACCCCTCGAT 59.159 41.667 0.00 0.00 0.00 3.59
1456 1645 4.223953 AGCTAAGAAATGATACCCCTCGA 58.776 43.478 0.00 0.00 0.00 4.04
1521 1714 2.342179 GCTCCTAGCAACTCAACAGAC 58.658 52.381 0.00 0.00 41.89 3.51
1538 1731 1.001815 GGTGCTCGAGAGACTATGCTC 60.002 57.143 18.75 0.00 35.39 4.26
1542 1735 1.876799 CGATGGTGCTCGAGAGACTAT 59.123 52.381 18.75 14.57 41.12 2.12
1551 1744 0.530650 ACCTAATGCGATGGTGCTCG 60.531 55.000 0.00 0.00 41.54 5.03
1623 1816 3.388552 TCTCCTATCTGAACCTCAGCA 57.611 47.619 0.00 0.00 43.95 4.41
1627 1820 5.833131 AGACATCTTCTCCTATCTGAACCTC 59.167 44.000 0.00 0.00 0.00 3.85
1651 1845 9.357652 GCAATCATGAAACTTATTTTAGCAAGA 57.642 29.630 0.00 0.00 0.00 3.02
1691 1885 3.403038 CAAAGAACGACCAGACTCCATT 58.597 45.455 0.00 0.00 0.00 3.16
1704 1898 5.551760 AGCATACAGAAATCCAAAGAACG 57.448 39.130 0.00 0.00 0.00 3.95
1709 1903 8.637986 ACAAGTAAAAGCATACAGAAATCCAAA 58.362 29.630 0.00 0.00 0.00 3.28
1724 1918 6.016610 TGGTCTTGGATGTAACAAGTAAAAGC 60.017 38.462 5.24 0.00 44.29 3.51
1757 1951 0.028770 CACGTCAAGCGCTCCAAAAA 59.971 50.000 12.06 0.00 46.11 1.94
2130 2328 8.798402 TCCACATTAAATGAAAAACTCGGTAAT 58.202 29.630 0.00 0.00 0.00 1.89
2161 2360 4.525996 TGTCACCATTTGATACATGGGAG 58.474 43.478 0.00 0.00 45.05 4.30
2164 2363 4.943093 TCACTGTCACCATTTGATACATGG 59.057 41.667 0.00 0.00 46.07 3.66
2236 2436 6.587608 GCATAGTCCAAATTTCTTGTTGAAGG 59.412 38.462 0.00 0.00 35.89 3.46
2240 2440 6.215121 TGTGCATAGTCCAAATTTCTTGTTG 58.785 36.000 0.00 0.00 0.00 3.33
2325 2528 2.811431 CAAGTATGTGAAGGCCAACGAA 59.189 45.455 5.01 0.00 0.00 3.85
2347 2550 9.152595 CATTAGAAAACCTAAAGTACCTGAGAC 57.847 37.037 0.00 0.00 40.45 3.36
2447 2854 7.858382 CACTAGTATCTTAGACCAAACAGATCG 59.142 40.741 0.00 0.00 0.00 3.69
2810 4077 6.314152 GGGAAAATTTTCGTTCCAAAAGTTCA 59.686 34.615 21.53 0.00 44.40 3.18
2927 4723 5.060506 GGAAACAAAATTCACCGGGATTTT 58.939 37.500 6.32 12.48 32.07 1.82
3290 5411 4.942761 ATGCTTCACACCTTTCAAACAT 57.057 36.364 0.00 0.00 0.00 2.71
3340 5461 7.361799 GGTTTCGTAAATTTGCCTCTTCTGTAT 60.362 37.037 0.00 0.00 0.00 2.29
3344 5465 4.825085 TGGTTTCGTAAATTTGCCTCTTCT 59.175 37.500 0.00 0.00 0.00 2.85
3361 5482 6.146021 CCAAGTTGCATCAATTAACTGGTTTC 59.854 38.462 0.00 0.00 35.06 2.78
3408 5529 8.306313 TGAATTCAACTCCTACTTGATAGCTA 57.694 34.615 5.45 0.00 0.00 3.32
3579 6170 4.709886 AGCATTTGTAAGTTGGATAACCCC 59.290 41.667 0.00 0.00 37.52 4.95
3839 6438 4.712476 AGTATCATTCTGTTGCAGGGATC 58.288 43.478 0.00 0.00 31.51 3.36
4005 6618 0.109086 GCTAGTGTGAGAAGCTGCGA 60.109 55.000 0.00 0.00 33.40 5.10
4042 6655 5.890334 ACATGATTGTGAAAACTCGTTTGT 58.110 33.333 0.00 0.00 33.85 2.83
4233 7016 1.995626 GGGTAGCTGGGAGCAAGGA 60.996 63.158 0.00 0.00 45.56 3.36
4275 7058 2.306847 GGACTCTGGTGCCTTTCAAAA 58.693 47.619 0.00 0.00 0.00 2.44
4285 7068 1.597742 CAACAGTTGGGACTCTGGTG 58.402 55.000 5.25 0.00 40.47 4.17
4300 7083 3.489047 GCGTTACGTACTGTTAACCAACA 59.511 43.478 6.63 0.00 42.39 3.33
4302 7085 3.735240 CAGCGTTACGTACTGTTAACCAA 59.265 43.478 6.63 0.00 0.00 3.67
4303 7086 3.307674 CAGCGTTACGTACTGTTAACCA 58.692 45.455 6.63 0.00 0.00 3.67
4420 7203 1.270550 CTCACCATCAAACCAACCAGC 59.729 52.381 0.00 0.00 0.00 4.85
4437 7220 7.323420 AGAGAAAATTGATACGACATGACTCA 58.677 34.615 0.00 0.00 0.00 3.41
4484 7271 2.112998 CCCAATGTCGTCTAACCCCTA 58.887 52.381 0.00 0.00 0.00 3.53
4585 7382 7.609097 ACCTCCATGCCATACATATATCTAG 57.391 40.000 0.00 0.00 36.64 2.43
4587 7384 6.898171 AACCTCCATGCCATACATATATCT 57.102 37.500 0.00 0.00 36.64 1.98
4590 7388 6.446909 TGAAACCTCCATGCCATACATATA 57.553 37.500 0.00 0.00 36.64 0.86
4593 7391 3.668141 TGAAACCTCCATGCCATACAT 57.332 42.857 0.00 0.00 40.66 2.29
4607 7405 4.843220 AGCATAGCAATAGCATGAAACC 57.157 40.909 0.00 0.00 45.49 3.27
4609 7407 5.471116 CACCTAGCATAGCAATAGCATGAAA 59.529 40.000 0.00 0.00 45.49 2.69
4614 7412 4.588951 ACTACACCTAGCATAGCAATAGCA 59.411 41.667 0.00 0.00 45.49 3.49
4618 7416 8.980481 ATAAAAACTACACCTAGCATAGCAAT 57.020 30.769 0.00 0.00 37.37 3.56
4655 7453 6.939163 AGTATGAAAATCATAGATGGTCCAGC 59.061 38.462 0.00 0.00 39.76 4.85
4656 7454 7.389884 CCAGTATGAAAATCATAGATGGTCCAG 59.610 40.741 16.39 0.00 39.76 3.86
4659 7457 8.908786 TTCCAGTATGAAAATCATAGATGGTC 57.091 34.615 20.35 4.44 42.43 4.02
4661 7459 9.736414 AGATTCCAGTATGAAAATCATAGATGG 57.264 33.333 17.57 17.57 42.79 3.51
4669 7475 5.767168 CCCTCCAGATTCCAGTATGAAAATC 59.233 44.000 0.00 0.00 39.69 2.17
4675 7481 3.455910 TCAACCCTCCAGATTCCAGTATG 59.544 47.826 0.00 0.00 0.00 2.39
4676 7482 3.713764 CTCAACCCTCCAGATTCCAGTAT 59.286 47.826 0.00 0.00 0.00 2.12
4684 7490 1.008938 AGTAGGCTCAACCCTCCAGAT 59.991 52.381 0.00 0.00 40.58 2.90
4685 7491 0.413832 AGTAGGCTCAACCCTCCAGA 59.586 55.000 0.00 0.00 40.58 3.86
4686 7492 1.065854 CAAGTAGGCTCAACCCTCCAG 60.066 57.143 0.00 0.00 40.58 3.86
4687 7493 0.984230 CAAGTAGGCTCAACCCTCCA 59.016 55.000 0.00 0.00 40.58 3.86
4688 7494 0.253327 CCAAGTAGGCTCAACCCTCC 59.747 60.000 0.00 0.00 40.58 4.30
4689 7495 0.984995 ACCAAGTAGGCTCAACCCTC 59.015 55.000 0.00 0.00 43.14 4.30
4690 7496 2.188817 CTACCAAGTAGGCTCAACCCT 58.811 52.381 0.00 0.00 43.14 4.34
4691 7497 1.407025 GCTACCAAGTAGGCTCAACCC 60.407 57.143 0.00 0.00 43.14 4.11
4692 7498 1.278127 TGCTACCAAGTAGGCTCAACC 59.722 52.381 0.00 0.00 43.14 3.77
4693 7499 2.622436 CTGCTACCAAGTAGGCTCAAC 58.378 52.381 0.00 0.00 43.14 3.18
4694 7500 1.066143 GCTGCTACCAAGTAGGCTCAA 60.066 52.381 0.00 0.00 43.14 3.02
4695 7501 0.537188 GCTGCTACCAAGTAGGCTCA 59.463 55.000 0.00 0.00 43.14 4.26
4696 7502 0.537188 TGCTGCTACCAAGTAGGCTC 59.463 55.000 0.00 0.00 43.14 4.70
4697 7503 1.139853 GATGCTGCTACCAAGTAGGCT 59.860 52.381 0.00 0.00 43.14 4.58
4698 7504 1.587547 GATGCTGCTACCAAGTAGGC 58.412 55.000 0.00 0.94 43.14 3.93
4699 7505 1.486310 TGGATGCTGCTACCAAGTAGG 59.514 52.381 13.83 0.00 45.67 3.18
4700 7506 2.484417 CCTGGATGCTGCTACCAAGTAG 60.484 54.545 16.07 0.00 38.97 2.57
4701 7507 1.486310 CCTGGATGCTGCTACCAAGTA 59.514 52.381 16.07 0.00 33.14 2.24
4702 7508 0.254178 CCTGGATGCTGCTACCAAGT 59.746 55.000 16.07 0.00 33.14 3.16
4703 7509 0.543277 TCCTGGATGCTGCTACCAAG 59.457 55.000 16.07 11.81 33.14 3.61
4704 7510 0.253044 GTCCTGGATGCTGCTACCAA 59.747 55.000 16.07 3.80 33.14 3.67
4705 7511 1.626356 GGTCCTGGATGCTGCTACCA 61.626 60.000 14.96 14.96 0.00 3.25
4706 7512 1.147153 GGTCCTGGATGCTGCTACC 59.853 63.158 0.00 4.99 0.00 3.18
4707 7513 0.253044 TTGGTCCTGGATGCTGCTAC 59.747 55.000 0.00 0.00 0.00 3.58
4708 7514 0.543277 CTTGGTCCTGGATGCTGCTA 59.457 55.000 0.00 0.00 0.00 3.49
4709 7515 1.302285 CTTGGTCCTGGATGCTGCT 59.698 57.895 0.00 0.00 0.00 4.24
4710 7516 0.610232 AACTTGGTCCTGGATGCTGC 60.610 55.000 0.00 0.00 0.00 5.25
4711 7517 1.915141 AAACTTGGTCCTGGATGCTG 58.085 50.000 0.00 0.00 0.00 4.41
4712 7518 2.683211 AAAACTTGGTCCTGGATGCT 57.317 45.000 0.00 0.00 0.00 3.79
4720 7526 6.548622 ACTTTCCCTAACTTAAAACTTGGTCC 59.451 38.462 0.00 0.00 0.00 4.46
4721 7527 7.578310 ACTTTCCCTAACTTAAAACTTGGTC 57.422 36.000 0.00 0.00 0.00 4.02
4722 7528 7.966339 AACTTTCCCTAACTTAAAACTTGGT 57.034 32.000 0.00 0.00 0.00 3.67
4731 7537 9.939802 CTTAAGAGCTAAACTTTCCCTAACTTA 57.060 33.333 0.00 0.00 0.00 2.24
4733 7539 6.879993 GCTTAAGAGCTAAACTTTCCCTAACT 59.120 38.462 6.67 0.00 45.65 2.24
4734 7540 7.074507 GCTTAAGAGCTAAACTTTCCCTAAC 57.925 40.000 6.67 0.00 45.65 2.34
4763 7569 8.970691 TTAATGAAACAAGAGCTAATCTTTGC 57.029 30.769 0.00 0.00 46.49 3.68
4783 7590 5.723295 ACCCAGTTATTGCTTGCTTTAATG 58.277 37.500 0.00 0.00 0.00 1.90
4816 7623 4.800993 AGCGATAAGACACGAGAAAATCAG 59.199 41.667 0.00 0.00 0.00 2.90
4821 7628 4.093514 CGTTAGCGATAAGACACGAGAAA 58.906 43.478 0.00 0.00 41.33 2.52
4837 7644 3.398954 TCAATCATTTTCGCCGTTAGC 57.601 42.857 0.00 0.00 38.52 3.09
4838 7645 5.060446 GGTTTTCAATCATTTTCGCCGTTAG 59.940 40.000 0.00 0.00 0.00 2.34
4875 7682 4.526650 CCCTACCCAACAAAAATTGCTAGT 59.473 41.667 0.00 0.00 0.00 2.57
4936 7743 4.743644 CGGTACTCTTCCCAACGAATAATC 59.256 45.833 0.00 0.00 0.00 1.75
4948 7755 2.603953 CCTTTCGTTCGGTACTCTTCC 58.396 52.381 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.