Multiple sequence alignment - TraesCS6A01G241900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G241900 chr6A 100.000 2447 0 0 1 2447 453687294 453684848 0.000000e+00 4519.0
1 TraesCS6A01G241900 chr6A 94.883 684 34 1 1765 2447 382865196 382864513 0.000000e+00 1068.0
2 TraesCS6A01G241900 chr6A 83.681 576 84 8 1 573 349836581 349836013 3.580000e-148 534.0
3 TraesCS6A01G241900 chr1A 95.608 683 29 1 1766 2447 430595560 430596242 0.000000e+00 1094.0
4 TraesCS6A01G241900 chr7A 95.328 685 28 3 1765 2447 34304921 34304239 0.000000e+00 1085.0
5 TraesCS6A01G241900 chr7A 77.320 291 36 10 355 644 471403010 471403271 7.050000e-31 145.0
6 TraesCS6A01G241900 chr5A 95.322 684 28 3 1766 2447 217154381 217153700 0.000000e+00 1083.0
7 TraesCS6A01G241900 chr5A 94.883 684 31 3 1766 2447 617245074 617245755 0.000000e+00 1066.0
8 TraesCS6A01G241900 chr5A 86.979 576 65 4 1 567 234261033 234260459 7.380000e-180 640.0
9 TraesCS6A01G241900 chr4A 95.322 684 29 2 1766 2447 238503535 238504217 0.000000e+00 1083.0
10 TraesCS6A01G241900 chr4A 95.029 684 29 3 1766 2447 238498583 238499263 0.000000e+00 1070.0
11 TraesCS6A01G241900 chr4A 94.891 685 31 3 1765 2447 507568656 507567974 0.000000e+00 1068.0
12 TraesCS6A01G241900 chr4A 94.767 688 31 4 1762 2447 540924808 540924124 0.000000e+00 1066.0
13 TraesCS6A01G241900 chr4A 95.238 42 1 1 538 578 680928010 680927969 5.650000e-07 65.8
14 TraesCS6A01G241900 chr7D 91.433 677 45 6 1 665 399558 398883 0.000000e+00 917.0
15 TraesCS6A01G241900 chr7D 89.228 557 57 3 662 1216 504183255 504183810 0.000000e+00 693.0
16 TraesCS6A01G241900 chr7D 89.667 300 22 3 1 292 327931595 327931893 8.260000e-100 374.0
17 TraesCS6A01G241900 chr7D 96.000 50 2 0 1 50 121067905 121067856 5.610000e-12 82.4
18 TraesCS6A01G241900 chr2A 88.166 676 53 4 1 668 380445125 380445781 0.000000e+00 780.0
19 TraesCS6A01G241900 chr2A 88.194 576 58 5 1 567 552067416 552066842 0.000000e+00 678.0
20 TraesCS6A01G241900 chr2A 86.765 68 7 2 1612 1679 338130626 338130691 9.380000e-10 75.0
21 TraesCS6A01G241900 chr3A 85.223 494 56 5 88 573 677098539 677098055 2.190000e-135 492.0
22 TraesCS6A01G241900 chr3D 90.333 300 21 2 1 292 382407956 382407657 1.060000e-103 387.0
23 TraesCS6A01G241900 chr5B 85.075 335 46 4 885 1216 28885416 28885083 3.010000e-89 339.0
24 TraesCS6A01G241900 chr6B 84.500 200 30 1 707 905 51198593 51198394 1.920000e-46 196.0
25 TraesCS6A01G241900 chr4B 79.926 269 52 2 831 1097 607992747 607993015 1.920000e-46 196.0
26 TraesCS6A01G241900 chr3B 75.424 236 35 10 410 644 412398640 412398853 2.590000e-15 93.5
27 TraesCS6A01G241900 chr4D 94.340 53 3 0 2 54 252880949 252880897 5.610000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G241900 chr6A 453684848 453687294 2446 True 4519 4519 100.000 1 2447 1 chr6A.!!$R3 2446
1 TraesCS6A01G241900 chr6A 382864513 382865196 683 True 1068 1068 94.883 1765 2447 1 chr6A.!!$R2 682
2 TraesCS6A01G241900 chr6A 349836013 349836581 568 True 534 534 83.681 1 573 1 chr6A.!!$R1 572
3 TraesCS6A01G241900 chr1A 430595560 430596242 682 False 1094 1094 95.608 1766 2447 1 chr1A.!!$F1 681
4 TraesCS6A01G241900 chr7A 34304239 34304921 682 True 1085 1085 95.328 1765 2447 1 chr7A.!!$R1 682
5 TraesCS6A01G241900 chr5A 217153700 217154381 681 True 1083 1083 95.322 1766 2447 1 chr5A.!!$R1 681
6 TraesCS6A01G241900 chr5A 617245074 617245755 681 False 1066 1066 94.883 1766 2447 1 chr5A.!!$F1 681
7 TraesCS6A01G241900 chr5A 234260459 234261033 574 True 640 640 86.979 1 567 1 chr5A.!!$R2 566
8 TraesCS6A01G241900 chr4A 238503535 238504217 682 False 1083 1083 95.322 1766 2447 1 chr4A.!!$F2 681
9 TraesCS6A01G241900 chr4A 238498583 238499263 680 False 1070 1070 95.029 1766 2447 1 chr4A.!!$F1 681
10 TraesCS6A01G241900 chr4A 507567974 507568656 682 True 1068 1068 94.891 1765 2447 1 chr4A.!!$R1 682
11 TraesCS6A01G241900 chr4A 540924124 540924808 684 True 1066 1066 94.767 1762 2447 1 chr4A.!!$R2 685
12 TraesCS6A01G241900 chr7D 398883 399558 675 True 917 917 91.433 1 665 1 chr7D.!!$R1 664
13 TraesCS6A01G241900 chr7D 504183255 504183810 555 False 693 693 89.228 662 1216 1 chr7D.!!$F2 554
14 TraesCS6A01G241900 chr2A 380445125 380445781 656 False 780 780 88.166 1 668 1 chr2A.!!$F2 667
15 TraesCS6A01G241900 chr2A 552066842 552067416 574 True 678 678 88.194 1 567 1 chr2A.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.304705 CAACTATTCATCGCACGGCC 59.695 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1846 0.027063 CGTGCGTTCGTGGTTTTCTT 59.973 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.417612 GTTTAACAATTCAGTGTGTGTCATCT 58.582 34.615 0.00 0.00 0.00 2.90
50 51 4.215908 GTGTGTCATCTAGGGATCCAGTA 58.784 47.826 15.23 3.39 0.00 2.74
86 87 1.103398 ACAACCTCTGTGTGCTTGCC 61.103 55.000 0.00 0.00 36.69 4.52
95 96 0.519077 GTGTGCTTGCCTTACTGCTC 59.481 55.000 0.00 0.00 0.00 4.26
115 116 5.184096 TGCTCTGTCTCTACGATCTTTCTTT 59.816 40.000 0.00 0.00 0.00 2.52
119 120 6.378564 TCTGTCTCTACGATCTTTCTTTGGAT 59.621 38.462 0.00 0.00 0.00 3.41
153 154 1.275291 ACACACGTAATGACCTCTGGG 59.725 52.381 6.02 0.00 38.88 4.45
165 166 0.610687 CCTCTGGGCTTATCGATCCC 59.389 60.000 12.71 12.71 40.47 3.85
192 193 0.304705 CAACTATTCATCGCACGGCC 59.695 55.000 0.00 0.00 0.00 6.13
225 226 9.426837 CATTGAAAAATTATGACATGTTGGTCT 57.573 29.630 0.00 0.00 38.61 3.85
235 236 2.079158 CATGTTGGTCTGCGACTGATT 58.921 47.619 8.26 0.00 32.47 2.57
269 277 2.034066 TAGTTGTGGCTGGCCTGC 59.966 61.111 25.39 25.39 36.94 4.85
307 320 0.463295 AACATCGCATGCTCCTCCTG 60.463 55.000 17.13 6.33 0.00 3.86
407 420 2.618241 CCGCTCATTGGCAGCTTTATAA 59.382 45.455 0.00 0.00 34.45 0.98
445 458 2.203480 GGGCCACTTGCTTGACCA 60.203 61.111 4.39 0.00 40.92 4.02
446 459 1.832167 GGGCCACTTGCTTGACCAA 60.832 57.895 4.39 0.00 40.92 3.67
464 477 1.955778 CAATATTTCCATGGCAGCCGA 59.044 47.619 6.96 0.00 0.00 5.54
597 610 2.197605 TGAGTCGAACGGGTCAGCA 61.198 57.895 0.00 0.00 0.00 4.41
669 682 2.264109 GAGCATCGAAACAGAGACGA 57.736 50.000 0.00 0.00 40.18 4.20
687 700 4.803426 CGGCTCGTGGAGACCAGC 62.803 72.222 0.00 0.00 33.37 4.85
717 730 3.192954 TAACGACGAACCGGTGCGT 62.193 57.895 40.22 40.22 44.33 5.24
759 773 4.700365 GCGGGAAACAAGCGTGGC 62.700 66.667 4.26 0.00 0.00 5.01
778 792 4.467084 GACGGGGCAGCGGATTCA 62.467 66.667 0.00 0.00 0.00 2.57
786 800 1.153647 CAGCGGATTCAGGCGTACA 60.154 57.895 0.00 0.00 0.00 2.90
794 808 0.320421 TTCAGGCGTACAAGAGTGGC 60.320 55.000 0.00 0.00 0.00 5.01
827 841 1.895798 CGGGCTATAGCTCTCCATTGA 59.104 52.381 22.08 0.00 40.01 2.57
836 850 1.996191 GCTCTCCATTGACGACTTGAC 59.004 52.381 0.00 0.00 0.00 3.18
897 911 1.595382 CAGAGGCGCGGGATAAAGG 60.595 63.158 8.83 0.00 0.00 3.11
900 914 0.463116 GAGGCGCGGGATAAAGGAAA 60.463 55.000 8.83 0.00 0.00 3.13
906 920 1.444917 CGGGATAAAGGAAAGCGGCC 61.445 60.000 0.00 0.00 0.00 6.13
908 922 0.746923 GGATAAAGGAAAGCGGCCGT 60.747 55.000 28.70 11.01 0.00 5.68
915 929 3.249973 GAAAGCGGCCGTGACAACC 62.250 63.158 28.70 7.91 0.00 3.77
920 934 4.404098 GGCCGTGACAACCCCGAT 62.404 66.667 0.00 0.00 0.00 4.18
956 970 4.687215 GCTGCAGAGGCCACACGA 62.687 66.667 20.43 0.00 40.13 4.35
969 983 1.904865 ACACGACCGGGTTAGCTCA 60.905 57.895 6.32 0.00 0.00 4.26
975 989 4.451150 CGGGTTAGCTCAGCGGCA 62.451 66.667 1.45 0.00 34.17 5.69
976 990 2.820037 GGGTTAGCTCAGCGGCAC 60.820 66.667 1.45 0.00 34.17 5.01
1001 1015 3.486383 GAGTCCTCTGGAGATTCGAGAT 58.514 50.000 0.00 0.00 30.89 2.75
1017 1031 1.203441 AGATGGCTCAACTCCTGGCA 61.203 55.000 0.00 0.00 40.41 4.92
1018 1032 0.322816 GATGGCTCAACTCCTGGCAA 60.323 55.000 0.00 0.00 39.59 4.52
1027 1041 3.612247 CTCCTGGCAAGTCACCCCG 62.612 68.421 0.00 0.00 0.00 5.73
1051 1065 1.102809 CAGCTGTGGAAGTTGGTGCA 61.103 55.000 5.25 0.00 33.68 4.57
1061 1075 1.827789 GTTGGTGCAGGGCAGTTCA 60.828 57.895 0.00 0.00 40.08 3.18
1062 1076 1.153524 TTGGTGCAGGGCAGTTCAT 59.846 52.632 0.00 0.00 40.08 2.57
1107 1122 4.537433 GGGCAGCCTACGGAGCAG 62.537 72.222 12.43 0.00 0.00 4.24
1153 1168 2.499205 CGAGGCGATGGGTTGCTA 59.501 61.111 0.00 0.00 34.97 3.49
1158 1173 1.522569 GCGATGGGTTGCTAGAGGT 59.477 57.895 0.00 0.00 0.00 3.85
1219 1234 4.063967 CCGGCTCAGTGCGGTACA 62.064 66.667 0.00 0.00 44.05 2.90
1220 1235 2.507102 CGGCTCAGTGCGGTACAG 60.507 66.667 0.00 0.00 44.05 2.74
1221 1236 2.815647 GGCTCAGTGCGGTACAGC 60.816 66.667 11.37 11.37 44.05 4.40
1222 1237 3.181967 GCTCAGTGCGGTACAGCG 61.182 66.667 13.37 0.09 40.67 5.18
1238 1253 4.228097 CGCGGGCGATGCTTCAAG 62.228 66.667 7.38 0.00 42.83 3.02
1239 1254 3.880846 GCGGGCGATGCTTCAAGG 61.881 66.667 0.08 0.00 0.00 3.61
1240 1255 3.880846 CGGGCGATGCTTCAAGGC 61.881 66.667 0.08 0.00 0.00 4.35
1241 1256 2.751436 GGGCGATGCTTCAAGGCA 60.751 61.111 0.08 0.00 46.63 4.75
1242 1257 2.768492 GGGCGATGCTTCAAGGCAG 61.768 63.158 0.08 0.00 45.75 4.85
1243 1258 2.042831 GGCGATGCTTCAAGGCAGT 61.043 57.895 0.08 0.00 45.75 4.40
1244 1259 1.136147 GCGATGCTTCAAGGCAGTG 59.864 57.895 0.08 0.00 45.75 3.66
1245 1260 1.798735 CGATGCTTCAAGGCAGTGG 59.201 57.895 0.08 0.00 45.75 4.00
1246 1261 1.509923 GATGCTTCAAGGCAGTGGC 59.490 57.895 9.02 9.02 45.75 5.01
1247 1262 2.262471 GATGCTTCAAGGCAGTGGCG 62.262 60.000 11.51 0.00 45.75 5.69
1248 1263 2.669569 GCTTCAAGGCAGTGGCGA 60.670 61.111 11.51 0.15 42.47 5.54
1249 1264 2.970974 GCTTCAAGGCAGTGGCGAC 61.971 63.158 11.51 0.00 42.47 5.19
1250 1265 2.664851 TTCAAGGCAGTGGCGACG 60.665 61.111 11.51 3.92 42.47 5.12
1253 1268 4.927782 AAGGCAGTGGCGACGCAA 62.928 61.111 23.09 7.74 45.56 4.85
1256 1271 4.374702 GCAGTGGCGACGCAACAG 62.375 66.667 28.10 21.57 45.56 3.16
1257 1272 2.661537 CAGTGGCGACGCAACAGA 60.662 61.111 28.10 0.42 45.56 3.41
1258 1273 2.108157 AGTGGCGACGCAACAGAA 59.892 55.556 28.10 0.46 45.56 3.02
1259 1274 1.956170 AGTGGCGACGCAACAGAAG 60.956 57.895 28.10 0.00 45.56 2.85
1260 1275 3.345808 TGGCGACGCAACAGAAGC 61.346 61.111 23.09 1.55 0.00 3.86
1267 1282 3.744559 GCAACAGAAGCGGGTTGA 58.255 55.556 14.16 0.00 45.50 3.18
1268 1283 1.576421 GCAACAGAAGCGGGTTGAG 59.424 57.895 14.16 0.00 45.50 3.02
1269 1284 1.856265 GCAACAGAAGCGGGTTGAGG 61.856 60.000 14.16 0.00 45.50 3.86
1270 1285 1.600916 AACAGAAGCGGGTTGAGGC 60.601 57.895 0.00 0.00 0.00 4.70
1271 1286 2.032528 CAGAAGCGGGTTGAGGCA 59.967 61.111 0.00 0.00 0.00 4.75
1272 1287 2.037136 CAGAAGCGGGTTGAGGCAG 61.037 63.158 0.00 0.00 0.00 4.85
1273 1288 2.217038 AGAAGCGGGTTGAGGCAGA 61.217 57.895 0.00 0.00 0.00 4.26
1274 1289 1.743252 GAAGCGGGTTGAGGCAGAG 60.743 63.158 0.00 0.00 0.00 3.35
1275 1290 3.259633 AAGCGGGTTGAGGCAGAGG 62.260 63.158 0.00 0.00 0.00 3.69
1278 1293 4.785453 GGGTTGAGGCAGAGGCGG 62.785 72.222 0.00 0.00 42.47 6.13
1280 1295 4.400961 GTTGAGGCAGAGGCGGCT 62.401 66.667 13.09 13.09 45.92 5.52
1281 1296 4.399395 TTGAGGCAGAGGCGGCTG 62.399 66.667 19.63 4.70 42.77 4.85
1303 1318 4.641645 CCGGGCACAACAGGAGCA 62.642 66.667 0.00 0.00 34.45 4.26
1304 1319 3.052082 CGGGCACAACAGGAGCAG 61.052 66.667 0.00 0.00 34.45 4.24
1305 1320 2.431683 GGGCACAACAGGAGCAGA 59.568 61.111 0.00 0.00 34.45 4.26
1306 1321 1.673665 GGGCACAACAGGAGCAGAG 60.674 63.158 0.00 0.00 34.45 3.35
1307 1322 1.072159 GGCACAACAGGAGCAGAGT 59.928 57.895 0.00 0.00 34.45 3.24
1308 1323 1.233285 GGCACAACAGGAGCAGAGTG 61.233 60.000 0.00 0.00 34.45 3.51
1309 1324 0.250038 GCACAACAGGAGCAGAGTGA 60.250 55.000 0.00 0.00 32.85 3.41
1310 1325 1.793258 CACAACAGGAGCAGAGTGAG 58.207 55.000 0.00 0.00 0.00 3.51
1311 1326 0.683973 ACAACAGGAGCAGAGTGAGG 59.316 55.000 0.00 0.00 0.00 3.86
1312 1327 0.673022 CAACAGGAGCAGAGTGAGGC 60.673 60.000 0.00 0.00 0.00 4.70
1313 1328 1.123861 AACAGGAGCAGAGTGAGGCA 61.124 55.000 0.00 0.00 0.00 4.75
1314 1329 1.218585 CAGGAGCAGAGTGAGGCAG 59.781 63.158 0.00 0.00 0.00 4.85
1315 1330 2.125188 GGAGCAGAGTGAGGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
1316 1331 2.125188 GAGCAGAGTGAGGCAGCC 60.125 66.667 1.84 1.84 0.00 4.85
1317 1332 3.678951 GAGCAGAGTGAGGCAGCCC 62.679 68.421 8.22 0.00 0.00 5.19
1342 1357 4.641645 CAGCCAAGGCCGGTGACA 62.642 66.667 7.62 0.00 43.17 3.58
1343 1358 3.884774 AGCCAAGGCCGGTGACAA 61.885 61.111 7.62 0.00 43.17 3.18
1344 1359 3.670377 GCCAAGGCCGGTGACAAC 61.670 66.667 10.77 0.00 34.56 3.32
1345 1360 2.203280 CCAAGGCCGGTGACAACA 60.203 61.111 10.77 0.00 0.00 3.33
1346 1361 1.826054 CCAAGGCCGGTGACAACAA 60.826 57.895 10.77 0.00 0.00 2.83
1347 1362 1.358759 CAAGGCCGGTGACAACAAC 59.641 57.895 1.90 0.00 0.00 3.32
1348 1363 1.101049 CAAGGCCGGTGACAACAACT 61.101 55.000 1.90 0.00 0.00 3.16
1349 1364 1.101049 AAGGCCGGTGACAACAACTG 61.101 55.000 1.90 0.00 0.00 3.16
1350 1365 2.551912 GGCCGGTGACAACAACTGG 61.552 63.158 1.90 0.00 33.16 4.00
1351 1366 1.525077 GCCGGTGACAACAACTGGA 60.525 57.895 1.90 0.00 32.26 3.86
1352 1367 0.889186 GCCGGTGACAACAACTGGAT 60.889 55.000 1.90 0.00 32.26 3.41
1353 1368 0.874390 CCGGTGACAACAACTGGATG 59.126 55.000 0.00 0.00 32.26 3.51
1354 1369 1.542328 CCGGTGACAACAACTGGATGA 60.542 52.381 0.00 0.00 32.26 2.92
1355 1370 1.531149 CGGTGACAACAACTGGATGAC 59.469 52.381 0.00 0.00 0.00 3.06
1356 1371 2.571212 GGTGACAACAACTGGATGACA 58.429 47.619 0.00 0.00 0.00 3.58
1357 1372 2.290641 GGTGACAACAACTGGATGACAC 59.709 50.000 9.91 9.91 38.44 3.67
1358 1373 2.942376 GTGACAACAACTGGATGACACA 59.058 45.455 12.07 0.00 38.81 3.72
1359 1374 3.376859 GTGACAACAACTGGATGACACAA 59.623 43.478 12.07 0.00 38.81 3.33
1360 1375 3.376859 TGACAACAACTGGATGACACAAC 59.623 43.478 0.00 0.00 0.00 3.32
1361 1376 2.354510 ACAACAACTGGATGACACAACG 59.645 45.455 0.00 0.00 0.00 4.10
1362 1377 2.611751 CAACAACTGGATGACACAACGA 59.388 45.455 0.00 0.00 0.00 3.85
1363 1378 3.126001 ACAACTGGATGACACAACGAT 57.874 42.857 0.00 0.00 0.00 3.73
1364 1379 3.067106 ACAACTGGATGACACAACGATC 58.933 45.455 0.00 0.00 0.00 3.69
1365 1380 2.386661 ACTGGATGACACAACGATCC 57.613 50.000 0.00 0.00 36.87 3.36
1366 1381 1.280982 CTGGATGACACAACGATCCG 58.719 55.000 0.00 0.00 38.88 4.18
1367 1382 0.892063 TGGATGACACAACGATCCGA 59.108 50.000 0.00 0.00 38.88 4.55
1368 1383 1.278238 GGATGACACAACGATCCGAC 58.722 55.000 0.00 0.00 0.00 4.79
1369 1384 1.135083 GGATGACACAACGATCCGACT 60.135 52.381 0.00 0.00 0.00 4.18
1370 1385 2.186076 GATGACACAACGATCCGACTC 58.814 52.381 0.00 0.00 0.00 3.36
1371 1386 0.109919 TGACACAACGATCCGACTCG 60.110 55.000 5.24 5.24 44.14 4.18
1372 1387 0.167470 GACACAACGATCCGACTCGA 59.833 55.000 12.54 0.00 41.12 4.04
1373 1388 0.109873 ACACAACGATCCGACTCGAC 60.110 55.000 12.54 0.00 41.12 4.20
1374 1389 1.126421 CACAACGATCCGACTCGACG 61.126 60.000 12.54 5.67 41.12 5.12
1375 1390 1.293963 ACAACGATCCGACTCGACGA 61.294 55.000 12.54 0.00 41.12 4.20
1376 1391 0.586748 CAACGATCCGACTCGACGAG 60.587 60.000 22.97 22.97 41.12 4.18
1377 1392 1.703438 AACGATCCGACTCGACGAGG 61.703 60.000 27.39 12.25 41.12 4.63
1378 1393 2.883468 CGATCCGACTCGACGAGGG 61.883 68.421 27.39 19.58 41.12 4.30
1379 1394 3.183776 GATCCGACTCGACGAGGGC 62.184 68.421 27.39 17.72 33.35 5.19
1380 1395 3.700831 ATCCGACTCGACGAGGGCT 62.701 63.158 27.39 9.91 33.35 5.19
1381 1396 3.878519 CCGACTCGACGAGGGCTC 61.879 72.222 27.39 15.44 33.35 4.70
1382 1397 3.125573 CGACTCGACGAGGGCTCA 61.126 66.667 27.39 0.00 33.35 4.26
1383 1398 2.687805 CGACTCGACGAGGGCTCAA 61.688 63.158 27.39 0.00 33.35 3.02
1384 1399 1.137825 GACTCGACGAGGGCTCAAG 59.862 63.158 27.39 2.39 33.35 3.02
1385 1400 1.587933 GACTCGACGAGGGCTCAAGT 61.588 60.000 27.39 5.82 33.35 3.16
1386 1401 1.179814 ACTCGACGAGGGCTCAAGTT 61.180 55.000 27.39 1.40 33.35 2.66
1387 1402 0.734253 CTCGACGAGGGCTCAAGTTG 60.734 60.000 17.27 0.00 0.00 3.16
1388 1403 1.176619 TCGACGAGGGCTCAAGTTGA 61.177 55.000 5.25 5.25 0.00 3.18
1389 1404 0.319555 CGACGAGGGCTCAAGTTGAA 60.320 55.000 7.06 0.00 0.00 2.69
1390 1405 1.433534 GACGAGGGCTCAAGTTGAAG 58.566 55.000 7.06 2.80 0.00 3.02
1391 1406 0.035458 ACGAGGGCTCAAGTTGAAGG 59.965 55.000 7.06 0.00 0.00 3.46
1392 1407 1.301677 CGAGGGCTCAAGTTGAAGGC 61.302 60.000 7.06 12.47 0.00 4.35
1393 1408 1.301677 GAGGGCTCAAGTTGAAGGCG 61.302 60.000 7.06 0.00 0.00 5.52
1394 1409 2.335712 GGGCTCAAGTTGAAGGCGG 61.336 63.158 7.06 0.00 0.00 6.13
1395 1410 2.563427 GCTCAAGTTGAAGGCGGC 59.437 61.111 7.06 0.00 0.00 6.53
1396 1411 1.968540 GCTCAAGTTGAAGGCGGCT 60.969 57.895 5.25 5.25 0.00 5.52
1397 1412 1.916697 GCTCAAGTTGAAGGCGGCTC 61.917 60.000 13.70 6.72 0.00 4.70
1398 1413 1.630244 CTCAAGTTGAAGGCGGCTCG 61.630 60.000 13.70 0.00 0.00 5.03
1399 1414 1.667830 CAAGTTGAAGGCGGCTCGA 60.668 57.895 13.70 2.93 0.00 4.04
1400 1415 1.668151 AAGTTGAAGGCGGCTCGAC 60.668 57.895 13.70 15.29 33.59 4.20
1401 1416 3.119096 GTTGAAGGCGGCTCGACC 61.119 66.667 13.70 2.70 34.11 4.79
1402 1417 3.621805 TTGAAGGCGGCTCGACCA 61.622 61.111 13.70 5.57 39.03 4.02
1403 1418 3.589654 TTGAAGGCGGCTCGACCAG 62.590 63.158 13.70 0.00 39.03 4.00
1404 1419 4.821589 GAAGGCGGCTCGACCAGG 62.822 72.222 13.70 0.00 39.03 4.45
1437 1452 2.280186 GGCGAGGCCGATAAGGTG 60.280 66.667 0.00 0.00 39.62 4.00
1438 1453 2.967615 GCGAGGCCGATAAGGTGC 60.968 66.667 0.00 0.00 43.70 5.01
1439 1454 2.658593 CGAGGCCGATAAGGTGCG 60.659 66.667 0.00 0.00 43.70 5.34
1440 1455 2.967615 GAGGCCGATAAGGTGCGC 60.968 66.667 0.00 0.00 43.70 6.09
1441 1456 3.447025 GAGGCCGATAAGGTGCGCT 62.447 63.158 9.73 0.00 43.70 5.92
1442 1457 3.272334 GGCCGATAAGGTGCGCTG 61.272 66.667 9.73 0.00 43.70 5.18
1443 1458 3.272334 GCCGATAAGGTGCGCTGG 61.272 66.667 9.73 0.00 43.70 4.85
1444 1459 2.186903 CCGATAAGGTGCGCTGGT 59.813 61.111 9.73 0.00 34.51 4.00
1445 1460 2.173669 CCGATAAGGTGCGCTGGTG 61.174 63.158 9.73 0.00 34.51 4.17
1446 1461 1.153647 CGATAAGGTGCGCTGGTGA 60.154 57.895 9.73 0.00 0.00 4.02
1447 1462 1.421410 CGATAAGGTGCGCTGGTGAC 61.421 60.000 9.73 0.00 0.00 3.67
1448 1463 1.078426 ATAAGGTGCGCTGGTGACC 60.078 57.895 9.73 7.46 0.00 4.02
1449 1464 2.852495 ATAAGGTGCGCTGGTGACCG 62.852 60.000 9.73 0.00 34.72 4.79
1456 1471 4.148825 GCTGGTGACCGCGGAGAT 62.149 66.667 35.90 10.08 0.00 2.75
1457 1472 2.202797 CTGGTGACCGCGGAGATG 60.203 66.667 35.90 12.53 0.00 2.90
1458 1473 2.678580 TGGTGACCGCGGAGATGA 60.679 61.111 35.90 9.71 0.00 2.92
1459 1474 2.105128 GGTGACCGCGGAGATGAG 59.895 66.667 35.90 2.75 0.00 2.90
1460 1475 2.105128 GTGACCGCGGAGATGAGG 59.895 66.667 35.90 1.83 34.62 3.86
1461 1476 3.838271 TGACCGCGGAGATGAGGC 61.838 66.667 35.90 2.93 31.10 4.70
1465 1480 2.353607 CGCGGAGATGAGGCGTAC 60.354 66.667 0.00 0.00 44.52 3.67
1466 1481 2.835705 CGCGGAGATGAGGCGTACT 61.836 63.158 0.00 0.00 44.52 2.73
1467 1482 1.504647 CGCGGAGATGAGGCGTACTA 61.505 60.000 0.00 0.00 44.52 1.82
1468 1483 0.238817 GCGGAGATGAGGCGTACTAG 59.761 60.000 0.00 0.00 0.00 2.57
1469 1484 0.238817 CGGAGATGAGGCGTACTAGC 59.761 60.000 0.00 0.00 0.00 3.42
1470 1485 0.238817 GGAGATGAGGCGTACTAGCG 59.761 60.000 0.00 0.00 38.18 4.26
1471 1486 0.238817 GAGATGAGGCGTACTAGCGG 59.761 60.000 0.00 0.00 38.18 5.52
1472 1487 1.173444 AGATGAGGCGTACTAGCGGG 61.173 60.000 0.00 0.00 38.18 6.13
1473 1488 1.453762 GATGAGGCGTACTAGCGGGT 61.454 60.000 0.00 0.00 38.18 5.28
1474 1489 1.453762 ATGAGGCGTACTAGCGGGTC 61.454 60.000 0.00 0.00 38.18 4.46
1475 1490 2.832201 AGGCGTACTAGCGGGTCC 60.832 66.667 0.00 0.00 38.18 4.46
1476 1491 4.261781 GGCGTACTAGCGGGTCCG 62.262 72.222 4.85 4.85 43.09 4.79
1477 1492 3.204827 GCGTACTAGCGGGTCCGA 61.205 66.667 14.15 0.00 42.83 4.55
1478 1493 3.020627 CGTACTAGCGGGTCCGAG 58.979 66.667 14.15 5.12 42.83 4.63
1479 1494 2.541120 CGTACTAGCGGGTCCGAGG 61.541 68.421 14.15 4.59 42.83 4.63
1480 1495 2.517875 TACTAGCGGGTCCGAGGC 60.518 66.667 14.15 2.38 42.83 4.70
1481 1496 3.348554 TACTAGCGGGTCCGAGGCA 62.349 63.158 14.15 0.00 42.83 4.75
1482 1497 3.905678 CTAGCGGGTCCGAGGCAG 61.906 72.222 14.15 0.14 42.83 4.85
1483 1498 4.435970 TAGCGGGTCCGAGGCAGA 62.436 66.667 14.15 0.00 42.83 4.26
1484 1499 3.733507 TAGCGGGTCCGAGGCAGAT 62.734 63.158 14.15 0.00 42.83 2.90
1485 1500 4.899239 GCGGGTCCGAGGCAGATG 62.899 72.222 14.15 0.00 42.83 2.90
1486 1501 4.227134 CGGGTCCGAGGCAGATGG 62.227 72.222 2.83 0.00 42.83 3.51
1487 1502 2.764128 GGGTCCGAGGCAGATGGA 60.764 66.667 0.00 0.00 0.00 3.41
1488 1503 2.801631 GGGTCCGAGGCAGATGGAG 61.802 68.421 0.00 0.00 31.04 3.86
1489 1504 2.801631 GGTCCGAGGCAGATGGAGG 61.802 68.421 0.00 0.00 31.04 4.30
1490 1505 3.157252 TCCGAGGCAGATGGAGGC 61.157 66.667 0.00 0.00 0.00 4.70
1491 1506 4.598894 CCGAGGCAGATGGAGGCG 62.599 72.222 0.00 0.00 36.55 5.52
1492 1507 4.598894 CGAGGCAGATGGAGGCGG 62.599 72.222 0.00 0.00 36.55 6.13
1493 1508 4.925861 GAGGCAGATGGAGGCGGC 62.926 72.222 0.00 0.00 36.55 6.53
1497 1512 3.842923 CAGATGGAGGCGGCGACT 61.843 66.667 18.97 18.97 0.00 4.18
1498 1513 3.077556 AGATGGAGGCGGCGACTT 61.078 61.111 20.16 0.00 0.00 3.01
1499 1514 2.892425 GATGGAGGCGGCGACTTG 60.892 66.667 20.16 0.00 0.00 3.16
1510 1525 3.114616 CGACTTGCGGAGTGGCAG 61.115 66.667 0.00 0.00 44.94 4.85
1511 1526 2.031163 GACTTGCGGAGTGGCAGT 59.969 61.111 0.00 0.00 44.94 4.40
1512 1527 2.281070 ACTTGCGGAGTGGCAGTG 60.281 61.111 0.00 0.00 44.94 3.66
1513 1528 3.052082 CTTGCGGAGTGGCAGTGG 61.052 66.667 0.00 0.00 44.94 4.00
1516 1531 4.082523 GCGGAGTGGCAGTGGCTA 62.083 66.667 18.53 1.37 40.87 3.93
1517 1532 2.185350 CGGAGTGGCAGTGGCTAG 59.815 66.667 18.53 1.03 40.87 3.42
1518 1533 2.650116 CGGAGTGGCAGTGGCTAGT 61.650 63.158 18.53 7.17 40.87 2.57
1519 1534 1.679898 GGAGTGGCAGTGGCTAGTT 59.320 57.895 18.53 0.45 40.87 2.24
1520 1535 0.674895 GGAGTGGCAGTGGCTAGTTG 60.675 60.000 18.53 0.00 40.87 3.16
1521 1536 1.301677 GAGTGGCAGTGGCTAGTTGC 61.302 60.000 18.53 0.00 40.87 4.17
1522 1537 2.358615 TGGCAGTGGCTAGTTGCG 60.359 61.111 18.53 0.00 44.05 4.85
1523 1538 3.127533 GGCAGTGGCTAGTTGCGG 61.128 66.667 9.90 0.00 44.05 5.69
1524 1539 2.047274 GCAGTGGCTAGTTGCGGA 60.047 61.111 0.00 0.00 44.05 5.54
1525 1540 2.103042 GCAGTGGCTAGTTGCGGAG 61.103 63.158 0.00 0.00 44.05 4.63
1526 1541 1.448540 CAGTGGCTAGTTGCGGAGG 60.449 63.158 0.00 0.00 44.05 4.30
1527 1542 2.125106 GTGGCTAGTTGCGGAGGG 60.125 66.667 0.00 0.00 44.05 4.30
1528 1543 2.606519 TGGCTAGTTGCGGAGGGT 60.607 61.111 0.00 0.00 44.05 4.34
1529 1544 1.305465 TGGCTAGTTGCGGAGGGTA 60.305 57.895 0.00 0.00 44.05 3.69
1530 1545 1.327690 TGGCTAGTTGCGGAGGGTAG 61.328 60.000 0.00 0.00 44.05 3.18
1531 1546 1.442148 GCTAGTTGCGGAGGGTAGG 59.558 63.158 0.00 0.00 0.00 3.18
1532 1547 2.029307 GCTAGTTGCGGAGGGTAGGG 62.029 65.000 0.00 0.00 0.00 3.53
1533 1548 2.029307 CTAGTTGCGGAGGGTAGGGC 62.029 65.000 0.00 0.00 0.00 5.19
1534 1549 4.484872 GTTGCGGAGGGTAGGGCC 62.485 72.222 0.00 0.00 0.00 5.80
1555 1570 2.738521 CACGGAGGTGGCGTCTTG 60.739 66.667 0.00 0.00 40.58 3.02
1556 1571 4.681978 ACGGAGGTGGCGTCTTGC 62.682 66.667 0.00 0.00 45.38 4.01
1588 1603 3.206246 CCACGCACGTTGGTGGTT 61.206 61.111 21.27 0.00 46.79 3.67
1589 1604 2.326550 CACGCACGTTGGTGGTTC 59.673 61.111 7.66 0.00 44.54 3.62
1590 1605 2.125065 ACGCACGTTGGTGGTTCA 60.125 55.556 0.00 0.00 44.54 3.18
1591 1606 2.177580 ACGCACGTTGGTGGTTCAG 61.178 57.895 0.00 0.00 44.54 3.02
1592 1607 2.892334 CGCACGTTGGTGGTTCAGG 61.892 63.158 0.00 0.00 44.54 3.86
1593 1608 1.822186 GCACGTTGGTGGTTCAGGT 60.822 57.895 0.00 0.00 44.54 4.00
1594 1609 0.533308 GCACGTTGGTGGTTCAGGTA 60.533 55.000 0.00 0.00 44.54 3.08
1595 1610 1.956297 CACGTTGGTGGTTCAGGTAA 58.044 50.000 0.00 0.00 40.58 2.85
1596 1611 2.290464 CACGTTGGTGGTTCAGGTAAA 58.710 47.619 0.00 0.00 40.58 2.01
1597 1612 2.683867 CACGTTGGTGGTTCAGGTAAAA 59.316 45.455 0.00 0.00 40.58 1.52
1598 1613 2.684374 ACGTTGGTGGTTCAGGTAAAAC 59.316 45.455 0.00 0.00 0.00 2.43
1599 1614 2.286536 CGTTGGTGGTTCAGGTAAAACG 60.287 50.000 0.00 0.00 34.07 3.60
1600 1615 1.310904 TGGTGGTTCAGGTAAAACGC 58.689 50.000 0.00 0.00 0.00 4.84
1601 1616 1.310904 GGTGGTTCAGGTAAAACGCA 58.689 50.000 0.00 0.00 0.00 5.24
1602 1617 1.677052 GGTGGTTCAGGTAAAACGCAA 59.323 47.619 0.00 0.00 0.00 4.85
1604 1619 1.950909 TGGTTCAGGTAAAACGCAAGG 59.049 47.619 0.00 0.00 46.39 3.61
1605 1620 1.951602 GGTTCAGGTAAAACGCAAGGT 59.048 47.619 0.00 0.00 46.39 3.50
1606 1621 3.140623 GGTTCAGGTAAAACGCAAGGTA 58.859 45.455 0.00 0.00 46.39 3.08
1607 1622 3.565063 GGTTCAGGTAAAACGCAAGGTAA 59.435 43.478 0.00 0.00 46.39 2.85
1608 1623 4.530388 GTTCAGGTAAAACGCAAGGTAAC 58.470 43.478 0.00 0.00 46.39 2.50
1623 1638 2.955614 GGTAACTTAGAAGCACTGCGA 58.044 47.619 0.00 0.00 0.00 5.10
1624 1639 3.522553 GGTAACTTAGAAGCACTGCGAT 58.477 45.455 0.00 0.00 0.00 4.58
1625 1640 3.307242 GGTAACTTAGAAGCACTGCGATG 59.693 47.826 0.00 0.00 0.00 3.84
1626 1641 3.319137 AACTTAGAAGCACTGCGATGA 57.681 42.857 0.00 0.00 0.00 2.92
1627 1642 2.886081 ACTTAGAAGCACTGCGATGAG 58.114 47.619 0.00 0.00 0.00 2.90
1638 1653 3.333189 CGATGAGCCGGCGATGTG 61.333 66.667 23.20 8.84 0.00 3.21
1639 1654 3.643978 GATGAGCCGGCGATGTGC 61.644 66.667 23.20 2.32 45.38 4.57
1650 1665 0.870393 GCGATGTGCAGACCATATGG 59.130 55.000 20.68 20.68 45.45 2.74
1651 1666 1.541015 GCGATGTGCAGACCATATGGA 60.541 52.381 28.77 3.97 45.45 3.41
1652 1667 2.410939 CGATGTGCAGACCATATGGAG 58.589 52.381 28.77 17.20 38.94 3.86
1653 1668 2.775890 GATGTGCAGACCATATGGAGG 58.224 52.381 28.77 16.56 38.94 4.30
1654 1669 0.839277 TGTGCAGACCATATGGAGGG 59.161 55.000 28.77 16.22 38.94 4.30
1655 1670 0.109342 GTGCAGACCATATGGAGGGG 59.891 60.000 28.77 14.54 38.94 4.79
1656 1671 1.073897 GCAGACCATATGGAGGGGC 59.926 63.158 28.77 19.79 38.94 5.80
1658 1673 0.689623 CAGACCATATGGAGGGGCTC 59.310 60.000 28.77 13.71 43.22 4.70
1659 1674 0.833834 AGACCATATGGAGGGGCTCG 60.834 60.000 28.77 0.00 43.22 5.03
1660 1675 1.831652 GACCATATGGAGGGGCTCGG 61.832 65.000 28.77 0.00 38.94 4.63
1661 1676 2.348998 CATATGGAGGGGCTCGGC 59.651 66.667 0.00 0.00 0.00 5.54
1662 1677 3.314331 ATATGGAGGGGCTCGGCG 61.314 66.667 0.00 0.00 0.00 6.46
1663 1678 3.828083 ATATGGAGGGGCTCGGCGA 62.828 63.158 10.14 10.14 0.00 5.54
1676 1691 2.750637 GGCGACTCACCCGAGAGA 60.751 66.667 6.51 0.00 42.34 3.10
1677 1692 2.486042 GCGACTCACCCGAGAGAC 59.514 66.667 6.51 0.56 42.34 3.36
1678 1693 3.053849 GCGACTCACCCGAGAGACC 62.054 68.421 6.51 0.00 42.34 3.85
1679 1694 1.674651 CGACTCACCCGAGAGACCA 60.675 63.158 6.51 0.00 42.34 4.02
1680 1695 1.884444 GACTCACCCGAGAGACCAC 59.116 63.158 6.51 0.00 42.34 4.16
1681 1696 0.894184 GACTCACCCGAGAGACCACA 60.894 60.000 6.51 0.00 42.34 4.17
1682 1697 1.179814 ACTCACCCGAGAGACCACAC 61.180 60.000 6.51 0.00 42.34 3.82
1683 1698 1.878656 CTCACCCGAGAGACCACACC 61.879 65.000 0.00 0.00 42.34 4.16
1684 1699 2.989824 ACCCGAGAGACCACACCG 60.990 66.667 0.00 0.00 0.00 4.94
1685 1700 3.760035 CCCGAGAGACCACACCGG 61.760 72.222 0.00 0.00 42.50 5.28
1686 1701 4.436998 CCGAGAGACCACACCGGC 62.437 72.222 0.00 0.00 39.03 6.13
1687 1702 3.680786 CGAGAGACCACACCGGCA 61.681 66.667 0.00 0.00 39.03 5.69
1688 1703 2.262915 GAGAGACCACACCGGCAG 59.737 66.667 0.00 0.00 39.03 4.85
1689 1704 3.302347 GAGAGACCACACCGGCAGG 62.302 68.421 0.00 0.00 45.13 4.85
1690 1705 4.394712 GAGACCACACCGGCAGGG 62.395 72.222 8.08 2.11 43.47 4.45
1707 1722 2.437895 GGTAACCCAAGGCGGCTC 60.438 66.667 13.70 0.00 0.00 4.70
1708 1723 2.349755 GTAACCCAAGGCGGCTCA 59.650 61.111 13.70 0.00 0.00 4.26
1709 1724 1.302993 GTAACCCAAGGCGGCTCAA 60.303 57.895 13.70 0.00 0.00 3.02
1710 1725 1.002624 TAACCCAAGGCGGCTCAAG 60.003 57.895 13.70 6.23 0.00 3.02
1711 1726 2.478335 TAACCCAAGGCGGCTCAAGG 62.478 60.000 13.70 15.88 0.00 3.61
1722 1737 3.636231 CTCAAGGCCGGACCACCA 61.636 66.667 1.76 0.00 43.14 4.17
1723 1738 3.901797 CTCAAGGCCGGACCACCAC 62.902 68.421 1.76 0.00 43.14 4.16
1724 1739 3.953775 CAAGGCCGGACCACCACT 61.954 66.667 1.76 0.00 43.14 4.00
1725 1740 3.637273 AAGGCCGGACCACCACTC 61.637 66.667 1.76 0.00 43.14 3.51
1729 1744 3.760035 CCGGACCACCACTCGGAG 61.760 72.222 0.00 2.83 44.69 4.63
1731 1746 4.083862 GGACCACCACTCGGAGGC 62.084 72.222 10.23 0.00 46.54 4.70
1732 1747 4.436998 GACCACCACTCGGAGGCG 62.437 72.222 10.23 1.01 46.54 5.52
1738 1753 4.069232 CACTCGGAGGCGGCTCAA 62.069 66.667 36.07 23.66 0.00 3.02
1739 1754 4.070552 ACTCGGAGGCGGCTCAAC 62.071 66.667 36.07 21.01 0.00 3.18
1826 1842 6.941436 ACACATATTTTACGTGGAAACCCTTA 59.059 34.615 0.00 0.00 34.91 2.69
1827 1843 7.612633 ACACATATTTTACGTGGAAACCCTTAT 59.387 33.333 0.00 0.00 34.91 1.73
1830 1846 9.550406 CATATTTTACGTGGAAACCCTTATAGA 57.450 33.333 0.00 0.00 0.00 1.98
1842 1858 5.750352 ACCCTTATAGAAGAAAACCACGA 57.250 39.130 0.00 0.00 34.25 4.35
1988 2004 2.787723 GAGTTGTACTCGTACGCGTA 57.212 50.000 16.41 16.41 35.28 4.42
2107 2123 2.421751 TCCCTCCAGTAGTCGAAGAG 57.578 55.000 0.00 0.00 36.95 2.85
2164 2180 2.236146 TGTGCGTCAAAGTCCATAGGAT 59.764 45.455 0.00 0.00 32.73 3.24
2188 2204 4.844884 AGTGAGAAATACCAACTAAGCCC 58.155 43.478 0.00 0.00 0.00 5.19
2196 2212 1.243902 CCAACTAAGCCCGAGCAAAA 58.756 50.000 0.00 0.00 43.56 2.44
2353 2369 8.812513 TTGTTCTCTCATGATACATTGGATTT 57.187 30.769 0.00 0.00 0.00 2.17
2394 2410 4.689345 ACTTTGACTGTCACTAAATACGGC 59.311 41.667 10.56 0.00 0.00 5.68
2407 2423 0.546122 ATACGGCAGGGCAAGATGAA 59.454 50.000 0.00 0.00 0.00 2.57
2423 2439 4.914983 AGATGAATCTCCACAAAGCTCAA 58.085 39.130 0.00 0.00 29.30 3.02
2424 2440 5.319453 AGATGAATCTCCACAAAGCTCAAA 58.681 37.500 0.00 0.00 29.30 2.69
2425 2441 5.771666 AGATGAATCTCCACAAAGCTCAAAA 59.228 36.000 0.00 0.00 29.30 2.44
2437 2453 6.980397 CACAAAGCTCAAAATACAAACCTCTT 59.020 34.615 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.742505 CGCAACGTACTGGATCCCTA 59.257 55.000 9.90 0.00 0.00 3.53
50 51 4.351938 TACCAGCGCTCGCAACGT 62.352 61.111 7.13 10.80 44.88 3.99
86 87 4.814234 AGATCGTAGAGACAGAGCAGTAAG 59.186 45.833 0.00 0.00 43.63 2.34
95 96 5.955488 TCCAAAGAAAGATCGTAGAGACAG 58.045 41.667 0.00 0.00 43.63 3.51
115 116 4.826733 GTGTGTAATGGCATAATCCATCCA 59.173 41.667 0.00 0.00 45.64 3.41
119 120 3.879998 ACGTGTGTAATGGCATAATCCA 58.120 40.909 0.00 0.00 40.97 3.41
153 154 1.996191 GCAATCTCGGGATCGATAAGC 59.004 52.381 0.00 0.00 45.04 3.09
165 166 3.245990 TGCGATGAATAGTTGCAATCTCG 59.754 43.478 0.59 8.48 33.20 4.04
192 193 2.285827 TAATTTTTCAATGGCCGCCG 57.714 45.000 4.58 0.00 0.00 6.46
225 226 2.416747 CAAGAGTTGGAATCAGTCGCA 58.583 47.619 0.00 0.00 0.00 5.10
235 236 4.883083 CAACTACTACTGCAAGAGTTGGA 58.117 43.478 15.62 0.00 42.03 3.53
269 277 6.574832 CGATGTTAAAATAATGGAGATGCGTG 59.425 38.462 0.00 0.00 0.00 5.34
307 320 3.123050 GACCTGGTGCAAATCAAAACAC 58.877 45.455 2.82 0.00 0.00 3.32
360 373 0.957395 CCAGGATGTGTGTGGTCTGC 60.957 60.000 0.00 0.00 0.00 4.26
392 405 6.780457 AGAACATGTTATAAAGCTGCCAAT 57.220 33.333 11.95 0.00 0.00 3.16
407 420 3.181471 CCTCGCAGGAGATAAGAACATGT 60.181 47.826 0.00 0.00 43.27 3.21
438 451 4.738541 GCTGCCATGGAAATATTGGTCAAG 60.739 45.833 18.40 0.00 32.90 3.02
445 458 1.956477 GTCGGCTGCCATGGAAATATT 59.044 47.619 18.40 0.00 0.00 1.28
446 459 1.609208 GTCGGCTGCCATGGAAATAT 58.391 50.000 18.40 0.00 0.00 1.28
464 477 2.678934 TCTGCTAACTCGCCGGGT 60.679 61.111 2.18 0.00 0.00 5.28
668 681 3.343788 CTGGTCTCCACGAGCCGTC 62.344 68.421 0.00 0.00 38.32 4.79
669 682 3.374402 CTGGTCTCCACGAGCCGT 61.374 66.667 0.00 0.00 42.36 5.68
677 690 3.062466 CGTCTCCGCTGGTCTCCA 61.062 66.667 0.00 0.00 0.00 3.86
678 691 3.827898 CCGTCTCCGCTGGTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
687 700 4.170062 TCGTTAGCGCCGTCTCCG 62.170 66.667 2.29 0.00 38.14 4.63
775 789 0.320421 GCCACTCTTGTACGCCTGAA 60.320 55.000 0.00 0.00 0.00 3.02
778 792 2.261671 CGCCACTCTTGTACGCCT 59.738 61.111 0.00 0.00 0.00 5.52
786 800 0.032678 CGCTATCATCCGCCACTCTT 59.967 55.000 0.00 0.00 0.00 2.85
827 841 2.473664 CTTCCGCCTCGTCAAGTCGT 62.474 60.000 0.00 0.00 0.00 4.34
862 876 0.034896 CTGCTGTTGTCGGGTTACCT 59.965 55.000 0.00 0.00 33.28 3.08
890 904 0.377203 CACGGCCGCTTTCCTTTATC 59.623 55.000 28.58 0.00 0.00 1.75
891 905 0.035820 TCACGGCCGCTTTCCTTTAT 60.036 50.000 28.58 0.00 0.00 1.40
897 911 2.251371 GTTGTCACGGCCGCTTTC 59.749 61.111 28.58 14.05 0.00 2.62
906 920 0.320421 AACTCATCGGGGTTGTCACG 60.320 55.000 0.00 0.00 0.00 4.35
908 922 0.036164 CCAACTCATCGGGGTTGTCA 59.964 55.000 6.69 0.00 40.56 3.58
915 929 1.243342 TGCTTTGCCAACTCATCGGG 61.243 55.000 0.00 0.00 0.00 5.14
919 933 2.353406 GCAATCTGCTTTGCCAACTCAT 60.353 45.455 7.96 0.00 44.94 2.90
920 934 1.000060 GCAATCTGCTTTGCCAACTCA 60.000 47.619 7.96 0.00 44.94 3.41
956 970 3.771160 CCGCTGAGCTAACCCGGT 61.771 66.667 1.78 0.00 34.56 5.28
983 997 2.591923 CCATCTCGAATCTCCAGAGGA 58.408 52.381 0.00 0.00 33.16 3.71
991 1005 2.102252 GGAGTTGAGCCATCTCGAATCT 59.898 50.000 9.10 0.00 43.72 2.40
996 1010 0.179089 CCAGGAGTTGAGCCATCTCG 60.179 60.000 6.99 0.00 42.26 4.04
1001 1015 1.073722 CTTGCCAGGAGTTGAGCCA 59.926 57.895 0.00 0.00 0.00 4.75
1032 1046 1.102809 TGCACCAACTTCCACAGCTG 61.103 55.000 13.48 13.48 0.00 4.24
1036 1050 1.152777 CCCTGCACCAACTTCCACA 60.153 57.895 0.00 0.00 0.00 4.17
1043 1057 1.181098 ATGAACTGCCCTGCACCAAC 61.181 55.000 0.00 0.00 33.79 3.77
1044 1058 1.153524 ATGAACTGCCCTGCACCAA 59.846 52.632 0.00 0.00 33.79 3.67
1051 1065 1.004044 CTCTGTTCCATGAACTGCCCT 59.996 52.381 8.30 0.00 42.39 5.19
1061 1075 3.004734 CGTTTTCTTTGCCTCTGTTCCAT 59.995 43.478 0.00 0.00 0.00 3.41
1062 1076 2.357637 CGTTTTCTTTGCCTCTGTTCCA 59.642 45.455 0.00 0.00 0.00 3.53
1073 1087 1.007849 CCCGTGGCCGTTTTCTTTG 60.008 57.895 0.00 0.00 0.00 2.77
1075 1089 2.596338 CCCCGTGGCCGTTTTCTT 60.596 61.111 0.00 0.00 0.00 2.52
1116 1131 2.125431 GTAAGCCGGCCGTTGCTA 60.125 61.111 26.03 13.42 36.66 3.49
1173 1188 2.743928 GCACCTCCGAGTGGCTTG 60.744 66.667 0.00 0.00 38.24 4.01
1192 1207 4.087892 TGAGCCGGCCTCTTCTGC 62.088 66.667 26.15 2.96 41.35 4.26
1193 1208 2.186384 CTGAGCCGGCCTCTTCTG 59.814 66.667 26.15 14.31 41.35 3.02
1221 1236 4.228097 CTTGAAGCATCGCCCGCG 62.228 66.667 0.00 0.00 41.35 6.46
1222 1237 3.880846 CCTTGAAGCATCGCCCGC 61.881 66.667 0.00 0.00 0.00 6.13
1223 1238 3.880846 GCCTTGAAGCATCGCCCG 61.881 66.667 0.00 0.00 0.00 6.13
1224 1239 2.751436 TGCCTTGAAGCATCGCCC 60.751 61.111 0.00 0.00 38.00 6.13
1225 1240 2.042831 ACTGCCTTGAAGCATCGCC 61.043 57.895 0.00 0.00 43.09 5.54
1226 1241 1.136147 CACTGCCTTGAAGCATCGC 59.864 57.895 0.00 0.00 43.09 4.58
1227 1242 1.798735 CCACTGCCTTGAAGCATCG 59.201 57.895 0.00 0.00 43.09 3.84
1228 1243 1.509923 GCCACTGCCTTGAAGCATC 59.490 57.895 0.00 0.00 43.09 3.91
1229 1244 2.338015 CGCCACTGCCTTGAAGCAT 61.338 57.895 0.00 0.00 43.09 3.79
1230 1245 2.979676 CGCCACTGCCTTGAAGCA 60.980 61.111 0.00 0.00 41.46 3.91
1231 1246 2.669569 TCGCCACTGCCTTGAAGC 60.670 61.111 0.00 0.00 0.00 3.86
1232 1247 2.671177 CGTCGCCACTGCCTTGAAG 61.671 63.158 0.00 0.00 0.00 3.02
1233 1248 2.664851 CGTCGCCACTGCCTTGAA 60.665 61.111 0.00 0.00 0.00 2.69
1236 1251 4.927782 TTGCGTCGCCACTGCCTT 62.928 61.111 15.88 0.00 0.00 4.35
1239 1254 4.374702 CTGTTGCGTCGCCACTGC 62.375 66.667 20.53 5.09 0.00 4.40
1240 1255 2.162921 CTTCTGTTGCGTCGCCACTG 62.163 60.000 20.53 19.44 0.00 3.66
1241 1256 1.956170 CTTCTGTTGCGTCGCCACT 60.956 57.895 20.53 0.00 0.00 4.00
1242 1257 2.551270 CTTCTGTTGCGTCGCCAC 59.449 61.111 15.88 14.92 0.00 5.01
1243 1258 3.345808 GCTTCTGTTGCGTCGCCA 61.346 61.111 15.88 5.33 0.00 5.69
1250 1265 1.576421 CTCAACCCGCTTCTGTTGC 59.424 57.895 0.00 0.00 41.21 4.17
1251 1266 1.856265 GCCTCAACCCGCTTCTGTTG 61.856 60.000 0.00 0.00 42.46 3.33
1252 1267 1.600916 GCCTCAACCCGCTTCTGTT 60.601 57.895 0.00 0.00 0.00 3.16
1253 1268 2.032681 GCCTCAACCCGCTTCTGT 59.967 61.111 0.00 0.00 0.00 3.41
1254 1269 2.032528 TGCCTCAACCCGCTTCTG 59.967 61.111 0.00 0.00 0.00 3.02
1255 1270 2.177594 CTCTGCCTCAACCCGCTTCT 62.178 60.000 0.00 0.00 0.00 2.85
1256 1271 1.743252 CTCTGCCTCAACCCGCTTC 60.743 63.158 0.00 0.00 0.00 3.86
1257 1272 2.348998 CTCTGCCTCAACCCGCTT 59.651 61.111 0.00 0.00 0.00 4.68
1258 1273 3.710722 CCTCTGCCTCAACCCGCT 61.711 66.667 0.00 0.00 0.00 5.52
1261 1276 4.785453 CCGCCTCTGCCTCAACCC 62.785 72.222 0.00 0.00 0.00 4.11
1263 1278 4.400961 AGCCGCCTCTGCCTCAAC 62.401 66.667 0.00 0.00 0.00 3.18
1264 1279 4.399395 CAGCCGCCTCTGCCTCAA 62.399 66.667 0.00 0.00 0.00 3.02
1286 1301 4.641645 TGCTCCTGTTGTGCCCGG 62.642 66.667 0.00 0.00 32.45 5.73
1287 1302 3.052082 CTGCTCCTGTTGTGCCCG 61.052 66.667 0.00 0.00 32.45 6.13
1288 1303 1.673665 CTCTGCTCCTGTTGTGCCC 60.674 63.158 0.00 0.00 32.45 5.36
1289 1304 1.072159 ACTCTGCTCCTGTTGTGCC 59.928 57.895 0.00 0.00 32.45 5.01
1290 1305 0.250038 TCACTCTGCTCCTGTTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
1291 1306 1.607509 CCTCACTCTGCTCCTGTTGTG 60.608 57.143 0.00 0.00 0.00 3.33
1292 1307 0.683973 CCTCACTCTGCTCCTGTTGT 59.316 55.000 0.00 0.00 0.00 3.32
1293 1308 0.673022 GCCTCACTCTGCTCCTGTTG 60.673 60.000 0.00 0.00 0.00 3.33
1294 1309 1.123861 TGCCTCACTCTGCTCCTGTT 61.124 55.000 0.00 0.00 0.00 3.16
1295 1310 1.534959 TGCCTCACTCTGCTCCTGT 60.535 57.895 0.00 0.00 0.00 4.00
1296 1311 1.218585 CTGCCTCACTCTGCTCCTG 59.781 63.158 0.00 0.00 0.00 3.86
1297 1312 2.658064 GCTGCCTCACTCTGCTCCT 61.658 63.158 0.00 0.00 0.00 3.69
1298 1313 2.125188 GCTGCCTCACTCTGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
1299 1314 2.125188 GGCTGCCTCACTCTGCTC 60.125 66.667 12.43 0.00 0.00 4.26
1300 1315 3.715097 GGGCTGCCTCACTCTGCT 61.715 66.667 19.68 0.00 0.00 4.24
1325 1340 4.641645 TGTCACCGGCCTTGGCTG 62.642 66.667 13.24 13.24 0.00 4.85
1326 1341 3.884774 TTGTCACCGGCCTTGGCT 61.885 61.111 11.71 0.00 0.00 4.75
1327 1342 3.670377 GTTGTCACCGGCCTTGGC 61.670 66.667 0.00 2.49 0.00 4.52
1328 1343 1.826054 TTGTTGTCACCGGCCTTGG 60.826 57.895 0.00 0.00 0.00 3.61
1329 1344 1.101049 AGTTGTTGTCACCGGCCTTG 61.101 55.000 0.00 0.00 0.00 3.61
1330 1345 1.101049 CAGTTGTTGTCACCGGCCTT 61.101 55.000 0.00 0.00 0.00 4.35
1331 1346 1.525995 CAGTTGTTGTCACCGGCCT 60.526 57.895 0.00 0.00 0.00 5.19
1332 1347 2.551912 CCAGTTGTTGTCACCGGCC 61.552 63.158 0.00 0.00 0.00 6.13
1333 1348 0.889186 ATCCAGTTGTTGTCACCGGC 60.889 55.000 0.00 0.00 0.00 6.13
1334 1349 0.874390 CATCCAGTTGTTGTCACCGG 59.126 55.000 0.00 0.00 0.00 5.28
1335 1350 1.531149 GTCATCCAGTTGTTGTCACCG 59.469 52.381 0.00 0.00 0.00 4.94
1336 1351 2.290641 GTGTCATCCAGTTGTTGTCACC 59.709 50.000 0.00 0.00 0.00 4.02
1337 1352 2.942376 TGTGTCATCCAGTTGTTGTCAC 59.058 45.455 0.00 0.00 0.00 3.67
1338 1353 3.274095 TGTGTCATCCAGTTGTTGTCA 57.726 42.857 0.00 0.00 0.00 3.58
1339 1354 3.546020 CGTTGTGTCATCCAGTTGTTGTC 60.546 47.826 0.00 0.00 0.00 3.18
1340 1355 2.354510 CGTTGTGTCATCCAGTTGTTGT 59.645 45.455 0.00 0.00 0.00 3.32
1341 1356 2.611751 TCGTTGTGTCATCCAGTTGTTG 59.388 45.455 0.00 0.00 0.00 3.33
1342 1357 2.912771 TCGTTGTGTCATCCAGTTGTT 58.087 42.857 0.00 0.00 0.00 2.83
1343 1358 2.613026 TCGTTGTGTCATCCAGTTGT 57.387 45.000 0.00 0.00 0.00 3.32
1344 1359 2.416547 GGATCGTTGTGTCATCCAGTTG 59.583 50.000 0.00 0.00 36.78 3.16
1345 1360 2.699954 GGATCGTTGTGTCATCCAGTT 58.300 47.619 0.00 0.00 36.78 3.16
1346 1361 1.404181 CGGATCGTTGTGTCATCCAGT 60.404 52.381 0.00 0.00 36.61 4.00
1347 1362 1.135112 TCGGATCGTTGTGTCATCCAG 60.135 52.381 0.00 0.00 36.61 3.86
1348 1363 0.892063 TCGGATCGTTGTGTCATCCA 59.108 50.000 0.00 0.00 36.61 3.41
1349 1364 1.135083 AGTCGGATCGTTGTGTCATCC 60.135 52.381 0.00 0.00 33.85 3.51
1350 1365 2.186076 GAGTCGGATCGTTGTGTCATC 58.814 52.381 0.00 0.00 0.00 2.92
1351 1366 1.467543 CGAGTCGGATCGTTGTGTCAT 60.468 52.381 4.10 0.00 37.91 3.06
1352 1367 0.109919 CGAGTCGGATCGTTGTGTCA 60.110 55.000 4.10 0.00 37.91 3.58
1353 1368 0.167470 TCGAGTCGGATCGTTGTGTC 59.833 55.000 13.54 0.00 43.20 3.67
1354 1369 0.109873 GTCGAGTCGGATCGTTGTGT 60.110 55.000 13.54 0.00 43.20 3.72
1355 1370 1.126421 CGTCGAGTCGGATCGTTGTG 61.126 60.000 13.54 0.00 43.20 3.33
1356 1371 1.134075 CGTCGAGTCGGATCGTTGT 59.866 57.895 13.54 0.00 43.20 3.32
1357 1372 0.586748 CTCGTCGAGTCGGATCGTTG 60.587 60.000 14.27 9.07 43.20 4.10
1358 1373 1.703438 CCTCGTCGAGTCGGATCGTT 61.703 60.000 20.37 0.00 43.20 3.85
1359 1374 2.172372 CCTCGTCGAGTCGGATCGT 61.172 63.158 20.37 0.00 43.20 3.73
1360 1375 2.627004 CCTCGTCGAGTCGGATCG 59.373 66.667 20.37 14.69 44.07 3.69
1361 1376 3.023950 CCCTCGTCGAGTCGGATC 58.976 66.667 20.37 3.14 0.00 3.36
1362 1377 3.210528 GCCCTCGTCGAGTCGGAT 61.211 66.667 20.37 0.00 0.00 4.18
1363 1378 4.405671 AGCCCTCGTCGAGTCGGA 62.406 66.667 20.37 1.76 0.00 4.55
1364 1379 3.878519 GAGCCCTCGTCGAGTCGG 61.879 72.222 20.37 15.84 0.00 4.79
1365 1380 2.585170 CTTGAGCCCTCGTCGAGTCG 62.585 65.000 20.37 6.09 0.00 4.18
1366 1381 1.137825 CTTGAGCCCTCGTCGAGTC 59.862 63.158 20.37 12.15 0.00 3.36
1367 1382 1.179814 AACTTGAGCCCTCGTCGAGT 61.180 55.000 20.37 2.39 39.91 4.18
1368 1383 0.734253 CAACTTGAGCCCTCGTCGAG 60.734 60.000 15.53 15.53 0.00 4.04
1369 1384 1.176619 TCAACTTGAGCCCTCGTCGA 61.177 55.000 0.00 0.00 0.00 4.20
1370 1385 0.319555 TTCAACTTGAGCCCTCGTCG 60.320 55.000 0.00 0.00 0.00 5.12
1371 1386 1.433534 CTTCAACTTGAGCCCTCGTC 58.566 55.000 0.00 0.00 0.00 4.20
1372 1387 0.035458 CCTTCAACTTGAGCCCTCGT 59.965 55.000 0.00 0.00 0.00 4.18
1373 1388 1.301677 GCCTTCAACTTGAGCCCTCG 61.302 60.000 0.00 0.00 0.00 4.63
1374 1389 1.301677 CGCCTTCAACTTGAGCCCTC 61.302 60.000 0.00 0.00 0.00 4.30
1375 1390 1.302832 CGCCTTCAACTTGAGCCCT 60.303 57.895 0.00 0.00 0.00 5.19
1376 1391 2.335712 CCGCCTTCAACTTGAGCCC 61.336 63.158 0.00 0.00 0.00 5.19
1377 1392 2.982744 GCCGCCTTCAACTTGAGCC 61.983 63.158 0.00 0.00 0.00 4.70
1378 1393 1.916697 GAGCCGCCTTCAACTTGAGC 61.917 60.000 0.00 0.00 0.00 4.26
1379 1394 1.630244 CGAGCCGCCTTCAACTTGAG 61.630 60.000 0.00 0.00 0.00 3.02
1380 1395 1.667830 CGAGCCGCCTTCAACTTGA 60.668 57.895 0.00 0.00 0.00 3.02
1381 1396 1.667830 TCGAGCCGCCTTCAACTTG 60.668 57.895 0.00 0.00 0.00 3.16
1382 1397 1.668151 GTCGAGCCGCCTTCAACTT 60.668 57.895 0.00 0.00 0.00 2.66
1383 1398 2.048127 GTCGAGCCGCCTTCAACT 60.048 61.111 0.00 0.00 0.00 3.16
1384 1399 3.119096 GGTCGAGCCGCCTTCAAC 61.119 66.667 2.39 0.00 0.00 3.18
1385 1400 3.589654 CTGGTCGAGCCGCCTTCAA 62.590 63.158 12.85 0.00 41.21 2.69
1386 1401 4.069232 CTGGTCGAGCCGCCTTCA 62.069 66.667 12.85 0.00 41.21 3.02
1387 1402 4.821589 CCTGGTCGAGCCGCCTTC 62.822 72.222 12.85 0.00 41.21 3.46
1420 1435 2.280186 CACCTTATCGGCCTCGCC 60.280 66.667 0.00 0.00 46.75 5.54
1421 1436 2.967615 GCACCTTATCGGCCTCGC 60.968 66.667 0.00 0.00 35.61 5.03
1422 1437 2.658593 CGCACCTTATCGGCCTCG 60.659 66.667 0.00 0.00 35.61 4.63
1423 1438 2.967615 GCGCACCTTATCGGCCTC 60.968 66.667 0.30 0.00 35.61 4.70
1424 1439 3.470888 AGCGCACCTTATCGGCCT 61.471 61.111 11.47 0.00 35.61 5.19
1425 1440 3.272334 CAGCGCACCTTATCGGCC 61.272 66.667 11.47 0.00 35.61 6.13
1426 1441 3.272334 CCAGCGCACCTTATCGGC 61.272 66.667 11.47 0.00 35.61 5.54
1427 1442 2.173669 CACCAGCGCACCTTATCGG 61.174 63.158 11.47 0.00 39.35 4.18
1428 1443 1.153647 TCACCAGCGCACCTTATCG 60.154 57.895 11.47 0.00 0.00 2.92
1429 1444 1.090052 GGTCACCAGCGCACCTTATC 61.090 60.000 11.47 0.00 0.00 1.75
1430 1445 1.078426 GGTCACCAGCGCACCTTAT 60.078 57.895 11.47 0.00 0.00 1.73
1431 1446 2.345991 GGTCACCAGCGCACCTTA 59.654 61.111 11.47 0.00 0.00 2.69
1432 1447 4.988598 CGGTCACCAGCGCACCTT 62.989 66.667 11.47 0.00 36.57 3.50
1439 1454 4.148825 ATCTCCGCGGTCACCAGC 62.149 66.667 27.15 0.00 0.00 4.85
1440 1455 2.202797 CATCTCCGCGGTCACCAG 60.203 66.667 27.15 15.16 0.00 4.00
1441 1456 2.678580 TCATCTCCGCGGTCACCA 60.679 61.111 27.15 3.71 0.00 4.17
1442 1457 2.105128 CTCATCTCCGCGGTCACC 59.895 66.667 27.15 0.00 0.00 4.02
1443 1458 2.105128 CCTCATCTCCGCGGTCAC 59.895 66.667 27.15 0.00 0.00 3.67
1444 1459 3.838271 GCCTCATCTCCGCGGTCA 61.838 66.667 27.15 13.52 0.00 4.02
1445 1460 4.933064 CGCCTCATCTCCGCGGTC 62.933 72.222 27.15 4.39 42.14 4.79
1449 1464 0.238817 CTAGTACGCCTCATCTCCGC 59.761 60.000 0.00 0.00 0.00 5.54
1450 1465 0.238817 GCTAGTACGCCTCATCTCCG 59.761 60.000 0.00 0.00 0.00 4.63
1451 1466 0.238817 CGCTAGTACGCCTCATCTCC 59.761 60.000 0.00 0.00 0.00 3.71
1452 1467 0.238817 CCGCTAGTACGCCTCATCTC 59.761 60.000 0.00 0.00 0.00 2.75
1453 1468 1.173444 CCCGCTAGTACGCCTCATCT 61.173 60.000 0.00 0.00 0.00 2.90
1454 1469 1.286260 CCCGCTAGTACGCCTCATC 59.714 63.158 0.00 0.00 0.00 2.92
1455 1470 1.453762 GACCCGCTAGTACGCCTCAT 61.454 60.000 0.00 0.00 0.00 2.90
1456 1471 2.044650 ACCCGCTAGTACGCCTCA 60.045 61.111 0.00 0.00 0.00 3.86
1457 1472 2.720605 GACCCGCTAGTACGCCTC 59.279 66.667 0.00 0.00 0.00 4.70
1458 1473 2.832201 GGACCCGCTAGTACGCCT 60.832 66.667 0.00 0.00 0.00 5.52
1459 1474 4.261781 CGGACCCGCTAGTACGCC 62.262 72.222 0.00 0.00 37.26 5.68
1460 1475 3.178569 CTCGGACCCGCTAGTACGC 62.179 68.421 3.13 0.00 44.01 4.42
1461 1476 2.541120 CCTCGGACCCGCTAGTACG 61.541 68.421 3.13 1.40 45.77 3.67
1462 1477 2.843352 GCCTCGGACCCGCTAGTAC 61.843 68.421 3.13 0.00 39.59 2.73
1463 1478 2.517875 GCCTCGGACCCGCTAGTA 60.518 66.667 3.13 0.00 39.59 1.82
1464 1479 4.753662 TGCCTCGGACCCGCTAGT 62.754 66.667 3.13 0.00 39.59 2.57
1465 1480 3.905678 CTGCCTCGGACCCGCTAG 61.906 72.222 3.13 0.00 39.59 3.42
1466 1481 3.733507 ATCTGCCTCGGACCCGCTA 62.734 63.158 3.13 0.00 39.59 4.26
1468 1483 4.899239 CATCTGCCTCGGACCCGC 62.899 72.222 3.13 0.00 39.59 6.13
1469 1484 4.227134 CCATCTGCCTCGGACCCG 62.227 72.222 1.31 1.31 41.35 5.28
1470 1485 2.764128 TCCATCTGCCTCGGACCC 60.764 66.667 0.00 0.00 0.00 4.46
1471 1486 2.801631 CCTCCATCTGCCTCGGACC 61.802 68.421 0.00 0.00 0.00 4.46
1472 1487 2.818132 CCTCCATCTGCCTCGGAC 59.182 66.667 0.00 0.00 0.00 4.79
1473 1488 3.157252 GCCTCCATCTGCCTCGGA 61.157 66.667 0.00 0.00 0.00 4.55
1474 1489 4.598894 CGCCTCCATCTGCCTCGG 62.599 72.222 0.00 0.00 0.00 4.63
1475 1490 4.598894 CCGCCTCCATCTGCCTCG 62.599 72.222 0.00 0.00 0.00 4.63
1476 1491 4.925861 GCCGCCTCCATCTGCCTC 62.926 72.222 0.00 0.00 0.00 4.70
1480 1495 3.376935 AAGTCGCCGCCTCCATCTG 62.377 63.158 0.00 0.00 0.00 2.90
1481 1496 3.077556 AAGTCGCCGCCTCCATCT 61.078 61.111 0.00 0.00 0.00 2.90
1482 1497 2.892425 CAAGTCGCCGCCTCCATC 60.892 66.667 0.00 0.00 0.00 3.51
1493 1508 3.114616 CTGCCACTCCGCAAGTCG 61.115 66.667 0.00 0.00 38.56 4.18
1494 1509 2.031163 ACTGCCACTCCGCAAGTC 59.969 61.111 0.00 0.00 38.56 3.01
1495 1510 2.281070 CACTGCCACTCCGCAAGT 60.281 61.111 0.00 0.00 38.56 3.16
1496 1511 3.052082 CCACTGCCACTCCGCAAG 61.052 66.667 0.00 0.00 38.56 4.01
1499 1514 4.082523 TAGCCACTGCCACTCCGC 62.083 66.667 0.00 0.00 38.69 5.54
1500 1515 2.172483 AACTAGCCACTGCCACTCCG 62.172 60.000 0.00 0.00 38.69 4.63
1501 1516 0.674895 CAACTAGCCACTGCCACTCC 60.675 60.000 0.00 0.00 38.69 3.85
1502 1517 1.301677 GCAACTAGCCACTGCCACTC 61.302 60.000 0.00 0.00 38.69 3.51
1503 1518 1.302832 GCAACTAGCCACTGCCACT 60.303 57.895 0.00 0.00 38.69 4.00
1504 1519 2.680913 CGCAACTAGCCACTGCCAC 61.681 63.158 0.00 0.00 41.38 5.01
1505 1520 2.358615 CGCAACTAGCCACTGCCA 60.359 61.111 0.00 0.00 41.38 4.92
1506 1521 3.127533 CCGCAACTAGCCACTGCC 61.128 66.667 0.00 0.00 41.38 4.85
1507 1522 2.047274 TCCGCAACTAGCCACTGC 60.047 61.111 0.00 0.00 41.38 4.40
1508 1523 1.448540 CCTCCGCAACTAGCCACTG 60.449 63.158 0.00 0.00 41.38 3.66
1509 1524 2.660064 CCCTCCGCAACTAGCCACT 61.660 63.158 0.00 0.00 41.38 4.00
1510 1525 1.610554 TACCCTCCGCAACTAGCCAC 61.611 60.000 0.00 0.00 41.38 5.01
1511 1526 1.305465 TACCCTCCGCAACTAGCCA 60.305 57.895 0.00 0.00 41.38 4.75
1512 1527 1.442148 CTACCCTCCGCAACTAGCC 59.558 63.158 0.00 0.00 41.38 3.93
1513 1528 1.442148 CCTACCCTCCGCAACTAGC 59.558 63.158 0.00 0.00 40.87 3.42
1514 1529 2.029307 GCCCTACCCTCCGCAACTAG 62.029 65.000 0.00 0.00 0.00 2.57
1515 1530 2.062177 GCCCTACCCTCCGCAACTA 61.062 63.158 0.00 0.00 0.00 2.24
1516 1531 3.400054 GCCCTACCCTCCGCAACT 61.400 66.667 0.00 0.00 0.00 3.16
1517 1532 4.484872 GGCCCTACCCTCCGCAAC 62.485 72.222 0.00 0.00 0.00 4.17
1538 1553 2.738521 CAAGACGCCACCTCCGTG 60.739 66.667 0.00 0.00 39.30 4.94
1539 1554 4.681978 GCAAGACGCCACCTCCGT 62.682 66.667 0.00 0.00 42.31 4.69
1572 1587 2.326550 GAACCACCAACGTGCGTG 59.673 61.111 8.02 8.02 38.79 5.34
1573 1588 2.125065 TGAACCACCAACGTGCGT 60.125 55.556 0.00 0.00 38.79 5.24
1574 1589 2.631428 CTGAACCACCAACGTGCG 59.369 61.111 0.00 0.00 38.79 5.34
1575 1590 0.533308 TACCTGAACCACCAACGTGC 60.533 55.000 0.00 0.00 38.79 5.34
1576 1591 1.956297 TTACCTGAACCACCAACGTG 58.044 50.000 0.00 0.00 39.91 4.49
1577 1592 2.684374 GTTTTACCTGAACCACCAACGT 59.316 45.455 0.00 0.00 0.00 3.99
1578 1593 2.286536 CGTTTTACCTGAACCACCAACG 60.287 50.000 0.00 0.00 0.00 4.10
1579 1594 2.542205 GCGTTTTACCTGAACCACCAAC 60.542 50.000 0.00 0.00 0.00 3.77
1580 1595 1.677052 GCGTTTTACCTGAACCACCAA 59.323 47.619 0.00 0.00 0.00 3.67
1581 1596 1.310904 GCGTTTTACCTGAACCACCA 58.689 50.000 0.00 0.00 0.00 4.17
1582 1597 1.310904 TGCGTTTTACCTGAACCACC 58.689 50.000 0.00 0.00 0.00 4.61
1583 1598 2.287368 CCTTGCGTTTTACCTGAACCAC 60.287 50.000 0.00 0.00 0.00 4.16
1584 1599 1.950909 CCTTGCGTTTTACCTGAACCA 59.049 47.619 0.00 0.00 0.00 3.67
1585 1600 1.951602 ACCTTGCGTTTTACCTGAACC 59.048 47.619 0.00 0.00 0.00 3.62
1586 1601 4.274214 AGTTACCTTGCGTTTTACCTGAAC 59.726 41.667 0.00 0.00 0.00 3.18
1587 1602 4.453751 AGTTACCTTGCGTTTTACCTGAA 58.546 39.130 0.00 0.00 0.00 3.02
1588 1603 4.075963 AGTTACCTTGCGTTTTACCTGA 57.924 40.909 0.00 0.00 0.00 3.86
1589 1604 4.823790 AAGTTACCTTGCGTTTTACCTG 57.176 40.909 0.00 0.00 0.00 4.00
1590 1605 5.857268 TCTAAGTTACCTTGCGTTTTACCT 58.143 37.500 0.00 0.00 31.89 3.08
1591 1606 6.544038 TTCTAAGTTACCTTGCGTTTTACC 57.456 37.500 0.00 0.00 31.89 2.85
1592 1607 6.075918 GCTTCTAAGTTACCTTGCGTTTTAC 58.924 40.000 0.00 0.00 31.89 2.01
1593 1608 5.759273 TGCTTCTAAGTTACCTTGCGTTTTA 59.241 36.000 0.00 0.00 31.89 1.52
1594 1609 4.577283 TGCTTCTAAGTTACCTTGCGTTTT 59.423 37.500 0.00 0.00 31.89 2.43
1595 1610 4.024302 GTGCTTCTAAGTTACCTTGCGTTT 60.024 41.667 0.00 0.00 31.89 3.60
1596 1611 3.497262 GTGCTTCTAAGTTACCTTGCGTT 59.503 43.478 0.00 0.00 31.89 4.84
1597 1612 3.064931 GTGCTTCTAAGTTACCTTGCGT 58.935 45.455 0.00 0.00 31.89 5.24
1598 1613 3.123621 CAGTGCTTCTAAGTTACCTTGCG 59.876 47.826 0.00 0.00 31.89 4.85
1599 1614 3.120165 GCAGTGCTTCTAAGTTACCTTGC 60.120 47.826 8.18 0.00 31.89 4.01
1600 1615 3.123621 CGCAGTGCTTCTAAGTTACCTTG 59.876 47.826 14.33 0.00 31.89 3.61
1601 1616 3.006537 TCGCAGTGCTTCTAAGTTACCTT 59.993 43.478 14.33 0.00 34.56 3.50
1602 1617 2.561419 TCGCAGTGCTTCTAAGTTACCT 59.439 45.455 14.33 0.00 0.00 3.08
1603 1618 2.955614 TCGCAGTGCTTCTAAGTTACC 58.044 47.619 14.33 0.00 0.00 2.85
1604 1619 4.174009 TCATCGCAGTGCTTCTAAGTTAC 58.826 43.478 14.33 0.00 0.00 2.50
1605 1620 4.424626 CTCATCGCAGTGCTTCTAAGTTA 58.575 43.478 14.33 0.00 0.00 2.24
1606 1621 3.257393 CTCATCGCAGTGCTTCTAAGTT 58.743 45.455 14.33 0.00 0.00 2.66
1607 1622 2.886081 CTCATCGCAGTGCTTCTAAGT 58.114 47.619 14.33 0.00 0.00 2.24
1608 1623 1.592081 GCTCATCGCAGTGCTTCTAAG 59.408 52.381 14.33 5.39 38.92 2.18
1609 1624 1.645034 GCTCATCGCAGTGCTTCTAA 58.355 50.000 14.33 0.00 38.92 2.10
1610 1625 0.179100 GGCTCATCGCAGTGCTTCTA 60.179 55.000 14.33 0.00 41.67 2.10
1611 1626 1.449246 GGCTCATCGCAGTGCTTCT 60.449 57.895 14.33 0.00 41.67 2.85
1612 1627 2.806856 CGGCTCATCGCAGTGCTTC 61.807 63.158 14.33 0.00 41.67 3.86
1613 1628 2.816958 CGGCTCATCGCAGTGCTT 60.817 61.111 14.33 0.00 41.67 3.91
1614 1629 4.827087 CCGGCTCATCGCAGTGCT 62.827 66.667 14.33 0.00 41.67 4.40
1618 1633 4.957684 ATCGCCGGCTCATCGCAG 62.958 66.667 26.68 6.06 41.67 5.18
1621 1636 3.333189 CACATCGCCGGCTCATCG 61.333 66.667 26.68 8.63 0.00 3.84
1622 1637 3.643978 GCACATCGCCGGCTCATC 61.644 66.667 26.68 4.65 32.94 2.92
1623 1638 4.471908 TGCACATCGCCGGCTCAT 62.472 61.111 26.68 13.70 41.33 2.90
1625 1640 4.819761 TCTGCACATCGCCGGCTC 62.820 66.667 26.68 6.79 41.33 4.70
1628 1643 2.642996 TATGGTCTGCACATCGCCGG 62.643 60.000 0.00 0.00 41.33 6.13
1629 1644 0.601046 ATATGGTCTGCACATCGCCG 60.601 55.000 0.00 0.00 41.33 6.46
1630 1645 0.870393 CATATGGTCTGCACATCGCC 59.130 55.000 0.00 0.00 41.33 5.54
1631 1646 0.870393 CCATATGGTCTGCACATCGC 59.130 55.000 14.09 0.00 42.89 4.58
1632 1647 2.410939 CTCCATATGGTCTGCACATCG 58.589 52.381 21.28 0.00 36.34 3.84
1633 1648 2.551721 CCCTCCATATGGTCTGCACATC 60.552 54.545 21.28 0.00 36.34 3.06
1634 1649 1.422781 CCCTCCATATGGTCTGCACAT 59.577 52.381 21.28 0.00 36.34 3.21
1635 1650 0.839277 CCCTCCATATGGTCTGCACA 59.161 55.000 21.28 0.00 36.34 4.57
1636 1651 0.109342 CCCCTCCATATGGTCTGCAC 59.891 60.000 21.28 0.00 36.34 4.57
1637 1652 1.708993 GCCCCTCCATATGGTCTGCA 61.709 60.000 21.28 0.58 36.34 4.41
1638 1653 1.073897 GCCCCTCCATATGGTCTGC 59.926 63.158 21.28 15.19 36.34 4.26
1639 1654 0.689623 GAGCCCCTCCATATGGTCTG 59.310 60.000 21.28 12.29 36.34 3.51
1640 1655 0.833834 CGAGCCCCTCCATATGGTCT 60.834 60.000 21.28 11.27 36.34 3.85
1641 1656 1.674057 CGAGCCCCTCCATATGGTC 59.326 63.158 21.28 9.42 36.34 4.02
1642 1657 1.843376 CCGAGCCCCTCCATATGGT 60.843 63.158 21.28 0.33 36.34 3.55
1643 1658 3.072476 CCGAGCCCCTCCATATGG 58.928 66.667 16.25 16.25 0.00 2.74
1644 1659 2.348998 GCCGAGCCCCTCCATATG 59.651 66.667 0.00 0.00 0.00 1.78
1645 1660 3.314331 CGCCGAGCCCCTCCATAT 61.314 66.667 0.00 0.00 0.00 1.78
1646 1661 4.533124 TCGCCGAGCCCCTCCATA 62.533 66.667 0.00 0.00 0.00 2.74
1656 1671 4.180946 CTCGGGTGAGTCGCCGAG 62.181 72.222 21.72 21.72 44.12 4.63
1657 1672 4.710167 TCTCGGGTGAGTCGCCGA 62.710 66.667 16.46 15.00 43.09 5.54
1658 1673 4.180946 CTCTCGGGTGAGTCGCCG 62.181 72.222 16.46 11.69 43.09 6.46
1659 1674 2.750637 TCTCTCGGGTGAGTCGCC 60.751 66.667 14.75 14.75 43.09 5.54
1660 1675 2.486042 GTCTCTCGGGTGAGTCGC 59.514 66.667 0.00 0.00 43.09 5.19
1661 1676 1.674651 TGGTCTCTCGGGTGAGTCG 60.675 63.158 0.00 0.00 43.09 4.18
1662 1677 0.894184 TGTGGTCTCTCGGGTGAGTC 60.894 60.000 0.00 0.00 43.09 3.36
1663 1678 1.153061 TGTGGTCTCTCGGGTGAGT 59.847 57.895 0.00 0.00 43.09 3.41
1664 1679 1.587054 GTGTGGTCTCTCGGGTGAG 59.413 63.158 0.00 0.00 43.99 3.51
1665 1680 1.906824 GGTGTGGTCTCTCGGGTGA 60.907 63.158 0.00 0.00 0.00 4.02
1666 1681 2.657237 GGTGTGGTCTCTCGGGTG 59.343 66.667 0.00 0.00 0.00 4.61
1667 1682 2.989824 CGGTGTGGTCTCTCGGGT 60.990 66.667 0.00 0.00 0.00 5.28
1668 1683 3.760035 CCGGTGTGGTCTCTCGGG 61.760 72.222 0.00 0.00 37.35 5.14
1669 1684 4.436998 GCCGGTGTGGTCTCTCGG 62.437 72.222 1.90 0.00 43.13 4.63
1670 1685 3.633094 CTGCCGGTGTGGTCTCTCG 62.633 68.421 1.90 0.00 41.21 4.04
1671 1686 2.262915 CTGCCGGTGTGGTCTCTC 59.737 66.667 1.90 0.00 41.21 3.20
1672 1687 3.314331 CCTGCCGGTGTGGTCTCT 61.314 66.667 1.90 0.00 41.21 3.10
1673 1688 4.394712 CCCTGCCGGTGTGGTCTC 62.395 72.222 1.90 0.00 41.21 3.36
1676 1691 4.966274 TACCCCTGCCGGTGTGGT 62.966 66.667 1.90 7.82 41.21 4.16
1677 1692 3.642503 TTACCCCTGCCGGTGTGG 61.643 66.667 1.90 2.64 36.56 4.17
1678 1693 2.359478 GTTACCCCTGCCGGTGTG 60.359 66.667 1.90 0.00 36.56 3.82
1679 1694 3.643554 GGTTACCCCTGCCGGTGT 61.644 66.667 1.90 0.00 36.56 4.16
1705 1720 3.636231 TGGTGGTCCGGCCTTGAG 61.636 66.667 14.76 0.00 38.35 3.02
1706 1721 3.948719 GTGGTGGTCCGGCCTTGA 61.949 66.667 14.76 0.00 38.35 3.02
1707 1722 3.901797 GAGTGGTGGTCCGGCCTTG 62.902 68.421 14.76 0.00 38.35 3.61
1708 1723 3.637273 GAGTGGTGGTCCGGCCTT 61.637 66.667 14.76 0.00 38.35 4.35
1712 1727 3.760035 CTCCGAGTGGTGGTCCGG 61.760 72.222 0.00 0.00 43.02 5.14
1713 1728 3.760035 CCTCCGAGTGGTGGTCCG 61.760 72.222 0.00 0.00 42.82 4.79
1721 1736 4.069232 TTGAGCCGCCTCCGAGTG 62.069 66.667 0.00 0.00 37.29 3.51
1722 1737 4.070552 GTTGAGCCGCCTCCGAGT 62.071 66.667 0.00 0.00 37.29 4.18
1750 1765 1.940883 TAACAGCCGGTACAGCTCCG 61.941 60.000 1.90 5.38 46.49 4.63
1751 1766 0.179108 CTAACAGCCGGTACAGCTCC 60.179 60.000 1.90 0.00 38.95 4.70
1752 1767 0.815734 TCTAACAGCCGGTACAGCTC 59.184 55.000 1.90 0.00 38.95 4.09
1753 1768 1.486211 ATCTAACAGCCGGTACAGCT 58.514 50.000 1.90 3.92 42.70 4.24
1754 1769 3.447918 TTATCTAACAGCCGGTACAGC 57.552 47.619 1.90 0.00 0.00 4.40
1755 1770 5.628193 CGTTATTATCTAACAGCCGGTACAG 59.372 44.000 1.90 0.00 0.00 2.74
1756 1771 5.299028 TCGTTATTATCTAACAGCCGGTACA 59.701 40.000 1.90 0.00 0.00 2.90
1757 1772 5.762045 TCGTTATTATCTAACAGCCGGTAC 58.238 41.667 1.90 0.00 0.00 3.34
1758 1773 5.764686 TCTCGTTATTATCTAACAGCCGGTA 59.235 40.000 1.90 0.00 0.00 4.02
1759 1774 4.581824 TCTCGTTATTATCTAACAGCCGGT 59.418 41.667 1.90 0.00 0.00 5.28
1760 1775 5.117355 TCTCGTTATTATCTAACAGCCGG 57.883 43.478 0.00 0.00 0.00 6.13
1761 1776 7.639162 ATTTCTCGTTATTATCTAACAGCCG 57.361 36.000 0.00 0.00 0.00 5.52
1798 1813 6.072342 GGGTTTCCACGTAAAATATGTGTCTT 60.072 38.462 8.46 0.00 42.68 3.01
1826 1842 3.185797 GTGCGTTCGTGGTTTTCTTCTAT 59.814 43.478 0.00 0.00 0.00 1.98
1827 1843 2.540931 GTGCGTTCGTGGTTTTCTTCTA 59.459 45.455 0.00 0.00 0.00 2.10
1830 1846 0.027063 CGTGCGTTCGTGGTTTTCTT 59.973 50.000 0.00 0.00 0.00 2.52
1988 2004 1.176619 GGCCTTTTGCGTTGGTACCT 61.177 55.000 14.36 0.00 42.61 3.08
2070 2086 2.247358 GGAATTTGGCTCAAGGTGGAA 58.753 47.619 0.00 0.00 0.00 3.53
2164 2180 6.412214 GGGCTTAGTTGGTATTTCTCACTAA 58.588 40.000 0.00 0.00 0.00 2.24
2196 2212 4.755123 CAGTTCCGACCAATAAGTTTGAGT 59.245 41.667 0.00 0.00 0.00 3.41
2394 2410 2.295885 GTGGAGATTCATCTTGCCCTG 58.704 52.381 0.00 0.00 37.25 4.45
2407 2423 6.899393 TTGTATTTTGAGCTTTGTGGAGAT 57.101 33.333 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.