Multiple sequence alignment - TraesCS6A01G241100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G241100 chr6A 100.000 5040 0 0 983 6022 452626944 452631983 0.000000e+00 9308.0
1 TraesCS6A01G241100 chr6A 100.000 780 0 0 1 780 452625962 452626741 0.000000e+00 1441.0
2 TraesCS6A01G241100 chr6A 85.714 140 9 6 576 705 452626603 452626741 2.930000e-28 137.0
3 TraesCS6A01G241100 chr6A 89.815 108 4 2 645 745 452626944 452627051 1.360000e-26 132.0
4 TraesCS6A01G241100 chr6A 95.833 72 0 1 5920 5988 452631809 452631880 4.930000e-21 113.0
5 TraesCS6A01G241100 chr6A 95.833 72 0 1 5848 5919 452631881 452631949 4.930000e-21 113.0
6 TraesCS6A01G241100 chr6A 96.296 54 1 1 5298 5351 452631344 452631396 2.990000e-13 87.9
7 TraesCS6A01G241100 chr2D 95.891 3188 109 9 2725 5898 21511388 21514567 0.000000e+00 5142.0
8 TraesCS6A01G241100 chr2D 93.378 1480 83 11 1084 2550 21509793 21511270 0.000000e+00 2176.0
9 TraesCS6A01G241100 chr2D 93.434 731 33 8 1 716 21509134 21509864 0.000000e+00 1070.0
10 TraesCS6A01G241100 chr2D 98.039 51 1 0 2668 2718 21511309 21511359 8.310000e-14 89.8
11 TraesCS6A01G241100 chr2D 96.154 52 1 1 5920 5970 21514516 21514567 3.870000e-12 84.2
12 TraesCS6A01G241100 chr2D 97.222 36 1 0 2841 2876 21511264 21511299 1.810000e-05 62.1
13 TraesCS6A01G241100 chr2D 91.111 45 2 2 5307 5351 21514059 21514101 6.520000e-05 60.2
14 TraesCS6A01G241100 chr6D 96.153 3041 74 14 2870 5898 315589932 315592941 0.000000e+00 4927.0
15 TraesCS6A01G241100 chr6D 89.816 1689 112 39 983 2629 315587581 315589251 0.000000e+00 2111.0
16 TraesCS6A01G241100 chr6D 91.517 778 37 17 1 756 315587006 315587776 0.000000e+00 1044.0
17 TraesCS6A01G241100 chr6D 98.137 161 3 0 2725 2885 315589736 315589896 1.280000e-71 281.0
18 TraesCS6A01G241100 chr6D 90.217 92 6 1 5931 6022 315592935 315593023 3.810000e-22 117.0
19 TraesCS6A01G241100 chr6D 96.154 52 1 1 5920 5970 315592890 315592941 3.870000e-12 84.2
20 TraesCS6A01G241100 chr6D 93.333 45 2 1 5307 5351 315592434 315592477 1.400000e-06 65.8
21 TraesCS6A01G241100 chr6D 87.097 62 2 1 5859 5920 315592935 315592990 1.400000e-06 65.8
22 TraesCS6A01G241100 chr6D 100.000 29 0 0 1289 1317 435215670 435215642 3.000000e-03 54.7
23 TraesCS6A01G241100 chr6B 94.052 2404 97 3 2668 5049 511734500 511732121 0.000000e+00 3605.0
24 TraesCS6A01G241100 chr6B 91.685 1347 76 13 1134 2477 511736729 511735416 0.000000e+00 1834.0
25 TraesCS6A01G241100 chr6B 87.668 746 48 21 1 733 511737479 511736765 0.000000e+00 828.0
26 TraesCS6A01G241100 chr6B 97.738 442 9 1 5458 5898 511732107 511731666 0.000000e+00 760.0
27 TraesCS6A01G241100 chr6B 91.304 92 5 1 5931 6022 511731672 511731584 8.200000e-24 122.0
28 TraesCS6A01G241100 chr6B 87.097 62 2 1 5859 5920 511731672 511731617 1.400000e-06 65.8
29 TraesCS6A01G241100 chr5D 89.168 757 81 1 4463 5219 21707605 21708360 0.000000e+00 942.0
30 TraesCS6A01G241100 chr5D 88.553 760 86 1 4463 5222 21694529 21695287 0.000000e+00 920.0
31 TraesCS6A01G241100 chr5D 88.158 760 88 2 4463 5222 21794319 21795076 0.000000e+00 904.0
32 TraesCS6A01G241100 chr5D 87.958 764 88 4 4459 5222 21720034 21720793 0.000000e+00 898.0
33 TraesCS6A01G241100 chr5D 100.000 29 0 0 1289 1317 319542731 319542759 3.000000e-03 54.7
34 TraesCS6A01G241100 chrUn 88.212 755 87 2 4466 5220 325894571 325895323 0.000000e+00 900.0
35 TraesCS6A01G241100 chr5B 88.212 755 87 2 4466 5220 15507027 15507779 0.000000e+00 900.0
36 TraesCS6A01G241100 chr5A 86.331 139 16 3 3915 4052 605389587 605389451 1.350000e-31 148.0
37 TraesCS6A01G241100 chr1D 81.395 172 31 1 3910 4080 8168459 8168630 8.140000e-29 139.0
38 TraesCS6A01G241100 chr1D 82.500 160 23 4 3922 4080 421545576 421545421 1.050000e-27 135.0
39 TraesCS6A01G241100 chr2B 77.075 253 48 9 3915 4157 754168007 754168259 2.930000e-28 137.0
40 TraesCS6A01G241100 chr3B 83.803 142 22 1 4096 4236 401408654 401408795 3.790000e-27 134.0
41 TraesCS6A01G241100 chr3A 83.803 142 22 1 4096 4236 408944251 408944392 3.790000e-27 134.0
42 TraesCS6A01G241100 chr3A 83.803 142 22 1 4096 4236 447273375 447273516 3.790000e-27 134.0
43 TraesCS6A01G241100 chr1A 81.065 169 29 3 3914 4080 73136153 73135986 1.360000e-26 132.0
44 TraesCS6A01G241100 chr7A 80.838 167 28 3 3910 4074 475397265 475397101 1.760000e-25 128.0
45 TraesCS6A01G241100 chr3D 83.453 139 22 1 4099 4236 317555501 317555363 1.760000e-25 128.0
46 TraesCS6A01G241100 chr3D 100.000 29 0 0 1289 1317 140475617 140475645 3.000000e-03 54.7
47 TraesCS6A01G241100 chr3D 88.889 45 2 3 1289 1333 396312970 396312929 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G241100 chr6A 452625962 452631983 6021 False 3628.666667 9308 95.238000 1 6022 3 chr6A.!!$F2 6021
1 TraesCS6A01G241100 chr2D 21509134 21514567 5433 False 1240.614286 5142 95.032714 1 5970 7 chr2D.!!$F1 5969
2 TraesCS6A01G241100 chr6D 315587006 315593023 6017 False 1086.975000 4927 92.803000 1 6022 8 chr6D.!!$F1 6021
3 TraesCS6A01G241100 chr6B 511731584 511737479 5895 True 1202.466667 3605 91.590667 1 6022 6 chr6B.!!$R1 6021
4 TraesCS6A01G241100 chr5D 21707605 21708360 755 False 942.000000 942 89.168000 4463 5219 1 chr5D.!!$F2 756
5 TraesCS6A01G241100 chr5D 21694529 21695287 758 False 920.000000 920 88.553000 4463 5222 1 chr5D.!!$F1 759
6 TraesCS6A01G241100 chr5D 21794319 21795076 757 False 904.000000 904 88.158000 4463 5222 1 chr5D.!!$F4 759
7 TraesCS6A01G241100 chr5D 21720034 21720793 759 False 898.000000 898 87.958000 4459 5222 1 chr5D.!!$F3 763
8 TraesCS6A01G241100 chrUn 325894571 325895323 752 False 900.000000 900 88.212000 4466 5220 1 chrUn.!!$F1 754
9 TraesCS6A01G241100 chr5B 15507027 15507779 752 False 900.000000 900 88.212000 4466 5220 1 chr5B.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 734 0.111639 ACGAGGAGGAGGAGGATAGC 59.888 60.000 0.00 0.0 0.0 2.97 F
1186 1220 0.039764 GAAGGGGAAGAACAAGGGGG 59.960 60.000 0.00 0.0 0.0 5.40 F
1325 1359 0.666577 GAGGACGACGGAAACACCAG 60.667 60.000 0.00 0.0 38.9 4.00 F
1576 1661 1.153667 GTCGAGGGCTTGCAGAGAG 60.154 63.158 0.00 0.0 0.0 3.20 F
2101 2189 1.154413 AAGAATCGCGCTGCAAACG 60.154 52.632 5.56 4.5 0.0 3.60 F
3225 4198 0.108186 TCGCGAGCTGAACATGGATT 60.108 50.000 3.71 0.0 0.0 3.01 F
3953 4926 2.288458 TGAAGTTCGTACAAAAAGGCGG 59.712 45.455 0.00 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2437 0.176680 CTCCCCACAGTTGATCCTCG 59.823 60.000 0.00 0.00 0.00 4.63 R
2676 3497 0.547075 GGACTCTTCCCCCTTTAGCC 59.453 60.000 0.00 0.00 35.57 3.93 R
2759 3679 6.858478 GTGAAATGAAGTAGAAGGCTTTTGTC 59.142 38.462 0.00 0.00 0.00 3.18 R
2774 3694 8.123575 TGTTTGCATTTGATTTGTGAAATGAAG 58.876 29.630 0.00 0.00 40.53 3.02 R
4033 5006 4.617593 AGGAAAGAAATCCATGGCTTCAT 58.382 39.130 21.65 11.81 42.27 2.57 R
4278 5251 0.106708 TCTGACTCAAAAGTGCCGCT 59.893 50.000 0.00 0.00 35.28 5.52 R
5566 6551 0.540133 TCACCACAGGTACACCGCTA 60.540 55.000 0.00 0.00 42.08 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
313 317 1.579698 CTGCGAAGTATGCTGCATCT 58.420 50.000 19.90 12.90 36.64 2.90
400 404 1.902508 GATGGGAGATTCGGCCATAGA 59.097 52.381 2.24 0.00 0.00 1.98
455 459 2.544359 CGGTTGTTGCGTCTCGTG 59.456 61.111 0.00 0.00 0.00 4.35
513 517 0.462047 GTAACTGATGACAGCGGGGG 60.462 60.000 4.26 0.00 46.95 5.40
579 583 1.272769 GGAATCCCGAGATAACGAGGG 59.727 57.143 0.00 0.43 45.10 4.30
653 669 1.292941 TGAGGAGGAGGAGGAGGAGG 61.293 65.000 0.00 0.00 0.00 4.30
655 671 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
656 672 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
657 673 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
658 674 0.330431 AGGAGGAGGAGGAGGAGGAT 60.330 60.000 0.00 0.00 0.00 3.24
659 675 0.178935 GGAGGAGGAGGAGGAGGATG 60.179 65.000 0.00 0.00 0.00 3.51
660 676 0.560688 GAGGAGGAGGAGGAGGATGT 59.439 60.000 0.00 0.00 0.00 3.06
661 677 0.264359 AGGAGGAGGAGGAGGATGTG 59.736 60.000 0.00 0.00 0.00 3.21
662 678 0.263172 GGAGGAGGAGGAGGATGTGA 59.737 60.000 0.00 0.00 0.00 3.58
663 679 1.132881 GGAGGAGGAGGAGGATGTGAT 60.133 57.143 0.00 0.00 0.00 3.06
664 680 1.969923 GAGGAGGAGGAGGATGTGATG 59.030 57.143 0.00 0.00 0.00 3.07
665 681 1.577729 AGGAGGAGGAGGATGTGATGA 59.422 52.381 0.00 0.00 0.00 2.92
666 682 1.969923 GGAGGAGGAGGATGTGATGAG 59.030 57.143 0.00 0.00 0.00 2.90
667 683 2.425538 GGAGGAGGAGGATGTGATGAGA 60.426 54.545 0.00 0.00 0.00 3.27
668 684 2.892852 GAGGAGGAGGATGTGATGAGAG 59.107 54.545 0.00 0.00 0.00 3.20
669 685 1.969923 GGAGGAGGATGTGATGAGAGG 59.030 57.143 0.00 0.00 0.00 3.69
670 686 1.969923 GAGGAGGATGTGATGAGAGGG 59.030 57.143 0.00 0.00 0.00 4.30
671 687 1.577729 AGGAGGATGTGATGAGAGGGA 59.422 52.381 0.00 0.00 0.00 4.20
672 688 2.022625 AGGAGGATGTGATGAGAGGGAA 60.023 50.000 0.00 0.00 0.00 3.97
673 689 2.368221 GGAGGATGTGATGAGAGGGAAG 59.632 54.545 0.00 0.00 0.00 3.46
674 690 3.303938 GAGGATGTGATGAGAGGGAAGA 58.696 50.000 0.00 0.00 0.00 2.87
675 691 3.708631 GAGGATGTGATGAGAGGGAAGAA 59.291 47.826 0.00 0.00 0.00 2.52
676 692 3.454082 AGGATGTGATGAGAGGGAAGAAC 59.546 47.826 0.00 0.00 0.00 3.01
677 693 3.198635 GGATGTGATGAGAGGGAAGAACA 59.801 47.826 0.00 0.00 0.00 3.18
678 694 4.323792 GGATGTGATGAGAGGGAAGAACAA 60.324 45.833 0.00 0.00 0.00 2.83
679 695 4.277515 TGTGATGAGAGGGAAGAACAAG 57.722 45.455 0.00 0.00 0.00 3.16
680 696 3.008375 TGTGATGAGAGGGAAGAACAAGG 59.992 47.826 0.00 0.00 0.00 3.61
681 697 3.261897 GTGATGAGAGGGAAGAACAAGGA 59.738 47.826 0.00 0.00 0.00 3.36
682 698 4.080638 GTGATGAGAGGGAAGAACAAGGAT 60.081 45.833 0.00 0.00 0.00 3.24
683 699 3.988976 TGAGAGGGAAGAACAAGGATG 57.011 47.619 0.00 0.00 0.00 3.51
684 700 3.520696 TGAGAGGGAAGAACAAGGATGA 58.479 45.455 0.00 0.00 0.00 2.92
685 701 4.107072 TGAGAGGGAAGAACAAGGATGAT 58.893 43.478 0.00 0.00 0.00 2.45
686 702 4.080695 TGAGAGGGAAGAACAAGGATGATG 60.081 45.833 0.00 0.00 0.00 3.07
687 703 4.107072 AGAGGGAAGAACAAGGATGATGA 58.893 43.478 0.00 0.00 0.00 2.92
688 704 4.537688 AGAGGGAAGAACAAGGATGATGAA 59.462 41.667 0.00 0.00 0.00 2.57
689 705 5.014544 AGAGGGAAGAACAAGGATGATGAAA 59.985 40.000 0.00 0.00 0.00 2.69
690 706 5.259632 AGGGAAGAACAAGGATGATGAAAG 58.740 41.667 0.00 0.00 0.00 2.62
691 707 5.012893 GGGAAGAACAAGGATGATGAAAGT 58.987 41.667 0.00 0.00 0.00 2.66
692 708 5.105997 GGGAAGAACAAGGATGATGAAAGTG 60.106 44.000 0.00 0.00 0.00 3.16
693 709 5.707298 GGAAGAACAAGGATGATGAAAGTGA 59.293 40.000 0.00 0.00 0.00 3.41
694 710 6.207417 GGAAGAACAAGGATGATGAAAGTGAA 59.793 38.462 0.00 0.00 0.00 3.18
695 711 6.814506 AGAACAAGGATGATGAAAGTGAAG 57.185 37.500 0.00 0.00 0.00 3.02
696 712 6.537355 AGAACAAGGATGATGAAAGTGAAGA 58.463 36.000 0.00 0.00 0.00 2.87
697 713 7.173722 AGAACAAGGATGATGAAAGTGAAGAT 58.826 34.615 0.00 0.00 0.00 2.40
698 714 8.324306 AGAACAAGGATGATGAAAGTGAAGATA 58.676 33.333 0.00 0.00 0.00 1.98
699 715 8.868522 AACAAGGATGATGAAAGTGAAGATAA 57.131 30.769 0.00 0.00 0.00 1.75
700 716 8.273780 ACAAGGATGATGAAAGTGAAGATAAC 57.726 34.615 0.00 0.00 0.00 1.89
706 722 6.333416 TGATGAAAGTGAAGATAACGAGGAG 58.667 40.000 0.00 0.00 0.00 3.69
715 731 2.719705 AGATAACGAGGAGGAGGAGGAT 59.280 50.000 0.00 0.00 0.00 3.24
716 732 3.917629 AGATAACGAGGAGGAGGAGGATA 59.082 47.826 0.00 0.00 0.00 2.59
717 733 2.668144 AACGAGGAGGAGGAGGATAG 57.332 55.000 0.00 0.00 0.00 2.08
718 734 0.111639 ACGAGGAGGAGGAGGATAGC 59.888 60.000 0.00 0.00 0.00 2.97
747 763 2.022625 AGGAGGATGTGATGAGAGGGAA 60.023 50.000 0.00 0.00 0.00 3.97
768 784 5.707298 GGAAGAACAAGGATGATGAAAGTGA 59.293 40.000 0.00 0.00 0.00 3.41
769 785 6.348868 GGAAGAACAAGGATGATGAAAGTGAC 60.349 42.308 0.00 0.00 0.00 3.67
770 786 4.692625 AGAACAAGGATGATGAAAGTGACG 59.307 41.667 0.00 0.00 0.00 4.35
771 787 4.271696 ACAAGGATGATGAAAGTGACGA 57.728 40.909 0.00 0.00 0.00 4.20
772 788 4.836825 ACAAGGATGATGAAAGTGACGAT 58.163 39.130 0.00 0.00 0.00 3.73
773 789 5.977635 ACAAGGATGATGAAAGTGACGATA 58.022 37.500 0.00 0.00 0.00 2.92
774 790 6.406370 ACAAGGATGATGAAAGTGACGATAA 58.594 36.000 0.00 0.00 0.00 1.75
775 791 6.313905 ACAAGGATGATGAAAGTGACGATAAC 59.686 38.462 0.00 0.00 0.00 1.89
776 792 5.043903 AGGATGATGAAAGTGACGATAACG 58.956 41.667 0.00 0.00 45.75 3.18
777 793 5.041287 GGATGATGAAAGTGACGATAACGA 58.959 41.667 0.00 0.00 42.66 3.85
778 794 5.174035 GGATGATGAAAGTGACGATAACGAG 59.826 44.000 0.00 0.00 42.66 4.18
779 795 4.421058 TGATGAAAGTGACGATAACGAGG 58.579 43.478 0.00 0.00 42.66 4.63
1000 1016 3.935371 GAGGAGGAGGAGGATGTGA 57.065 57.895 0.00 0.00 0.00 3.58
1001 1017 2.397044 GAGGAGGAGGAGGATGTGAT 57.603 55.000 0.00 0.00 0.00 3.06
1002 1018 1.969923 GAGGAGGAGGAGGATGTGATG 59.030 57.143 0.00 0.00 0.00 3.07
1003 1019 1.577729 AGGAGGAGGAGGATGTGATGA 59.422 52.381 0.00 0.00 0.00 2.92
1004 1020 1.969923 GGAGGAGGAGGATGTGATGAG 59.030 57.143 0.00 0.00 0.00 2.90
1005 1021 2.425538 GGAGGAGGAGGATGTGATGAGA 60.426 54.545 0.00 0.00 0.00 3.27
1006 1022 2.892852 GAGGAGGAGGATGTGATGAGAG 59.107 54.545 0.00 0.00 0.00 3.20
1007 1023 1.969923 GGAGGAGGATGTGATGAGAGG 59.030 57.143 0.00 0.00 0.00 3.69
1008 1024 1.969923 GAGGAGGATGTGATGAGAGGG 59.030 57.143 0.00 0.00 0.00 4.30
1009 1025 1.577729 AGGAGGATGTGATGAGAGGGA 59.422 52.381 0.00 0.00 0.00 4.20
1010 1026 2.022625 AGGAGGATGTGATGAGAGGGAA 60.023 50.000 0.00 0.00 0.00 3.97
1011 1027 2.368221 GGAGGATGTGATGAGAGGGAAG 59.632 54.545 0.00 0.00 0.00 3.46
1012 1028 3.303938 GAGGATGTGATGAGAGGGAAGA 58.696 50.000 0.00 0.00 0.00 2.87
1013 1029 3.708631 GAGGATGTGATGAGAGGGAAGAA 59.291 47.826 0.00 0.00 0.00 2.52
1014 1030 3.454082 AGGATGTGATGAGAGGGAAGAAC 59.546 47.826 0.00 0.00 0.00 3.01
1015 1031 3.198635 GGATGTGATGAGAGGGAAGAACA 59.801 47.826 0.00 0.00 0.00 3.18
1016 1032 4.323792 GGATGTGATGAGAGGGAAGAACAA 60.324 45.833 0.00 0.00 0.00 2.83
1017 1033 4.277515 TGTGATGAGAGGGAAGAACAAG 57.722 45.455 0.00 0.00 0.00 3.16
1018 1034 3.008375 TGTGATGAGAGGGAAGAACAAGG 59.992 47.826 0.00 0.00 0.00 3.61
1019 1035 3.261897 GTGATGAGAGGGAAGAACAAGGA 59.738 47.826 0.00 0.00 0.00 3.36
1020 1036 4.080638 GTGATGAGAGGGAAGAACAAGGAT 60.081 45.833 0.00 0.00 0.00 3.24
1021 1037 3.988976 TGAGAGGGAAGAACAAGGATG 57.011 47.619 0.00 0.00 0.00 3.51
1022 1038 3.520696 TGAGAGGGAAGAACAAGGATGA 58.479 45.455 0.00 0.00 0.00 2.92
1023 1039 4.107072 TGAGAGGGAAGAACAAGGATGAT 58.893 43.478 0.00 0.00 0.00 2.45
1024 1040 4.080695 TGAGAGGGAAGAACAAGGATGATG 60.081 45.833 0.00 0.00 0.00 3.07
1025 1041 4.107072 AGAGGGAAGAACAAGGATGATGA 58.893 43.478 0.00 0.00 0.00 2.92
1026 1042 4.163839 AGAGGGAAGAACAAGGATGATGAG 59.836 45.833 0.00 0.00 0.00 2.90
1027 1043 4.107072 AGGGAAGAACAAGGATGATGAGA 58.893 43.478 0.00 0.00 0.00 3.27
1028 1044 4.163839 AGGGAAGAACAAGGATGATGAGAG 59.836 45.833 0.00 0.00 0.00 3.20
1029 1045 4.080638 GGGAAGAACAAGGATGATGAGAGT 60.081 45.833 0.00 0.00 0.00 3.24
1030 1046 4.874966 GGAAGAACAAGGATGATGAGAGTG 59.125 45.833 0.00 0.00 0.00 3.51
1038 1054 5.446143 AGGATGATGAGAGTGACGATAAC 57.554 43.478 0.00 0.00 0.00 1.89
1074 1093 1.816224 GATGATAGCGAGGAGGAGGAC 59.184 57.143 0.00 0.00 0.00 3.85
1085 1107 3.226777 AGGAGGAGGACGATGTAATGAG 58.773 50.000 0.00 0.00 0.00 2.90
1142 1176 2.173356 GGGGTGATGATGTGATGAGGAA 59.827 50.000 0.00 0.00 0.00 3.36
1180 1214 3.308402 GGATGTGATGAAGGGGAAGAACA 60.308 47.826 0.00 0.00 0.00 3.18
1181 1215 3.874383 TGTGATGAAGGGGAAGAACAA 57.126 42.857 0.00 0.00 0.00 2.83
1182 1216 3.754965 TGTGATGAAGGGGAAGAACAAG 58.245 45.455 0.00 0.00 0.00 3.16
1183 1217 3.084786 GTGATGAAGGGGAAGAACAAGG 58.915 50.000 0.00 0.00 0.00 3.61
1184 1218 2.041620 TGATGAAGGGGAAGAACAAGGG 59.958 50.000 0.00 0.00 0.00 3.95
1185 1219 0.777446 TGAAGGGGAAGAACAAGGGG 59.223 55.000 0.00 0.00 0.00 4.79
1186 1220 0.039764 GAAGGGGAAGAACAAGGGGG 59.960 60.000 0.00 0.00 0.00 5.40
1202 1236 2.734755 GGGGGTGATGATGTGATGAA 57.265 50.000 0.00 0.00 0.00 2.57
1203 1237 2.579873 GGGGGTGATGATGTGATGAAG 58.420 52.381 0.00 0.00 0.00 3.02
1204 1238 2.173356 GGGGGTGATGATGTGATGAAGA 59.827 50.000 0.00 0.00 0.00 2.87
1205 1239 3.474600 GGGGTGATGATGTGATGAAGAG 58.525 50.000 0.00 0.00 0.00 2.85
1206 1240 3.474600 GGGTGATGATGTGATGAAGAGG 58.525 50.000 0.00 0.00 0.00 3.69
1207 1241 3.135348 GGGTGATGATGTGATGAAGAGGA 59.865 47.826 0.00 0.00 0.00 3.71
1208 1242 4.384537 GGGTGATGATGTGATGAAGAGGAA 60.385 45.833 0.00 0.00 0.00 3.36
1209 1243 4.815308 GGTGATGATGTGATGAAGAGGAAG 59.185 45.833 0.00 0.00 0.00 3.46
1210 1244 5.396101 GGTGATGATGTGATGAAGAGGAAGA 60.396 44.000 0.00 0.00 0.00 2.87
1211 1245 6.111382 GTGATGATGTGATGAAGAGGAAGAA 58.889 40.000 0.00 0.00 0.00 2.52
1212 1246 6.258287 GTGATGATGTGATGAAGAGGAAGAAG 59.742 42.308 0.00 0.00 0.00 2.85
1213 1247 5.095145 TGATGTGATGAAGAGGAAGAAGG 57.905 43.478 0.00 0.00 0.00 3.46
1214 1248 4.779489 TGATGTGATGAAGAGGAAGAAGGA 59.221 41.667 0.00 0.00 0.00 3.36
1215 1249 4.815533 TGTGATGAAGAGGAAGAAGGAG 57.184 45.455 0.00 0.00 0.00 3.69
1216 1250 3.517100 TGTGATGAAGAGGAAGAAGGAGG 59.483 47.826 0.00 0.00 0.00 4.30
1217 1251 3.772025 GTGATGAAGAGGAAGAAGGAGGA 59.228 47.826 0.00 0.00 0.00 3.71
1218 1252 4.408596 GTGATGAAGAGGAAGAAGGAGGAT 59.591 45.833 0.00 0.00 0.00 3.24
1219 1253 4.408270 TGATGAAGAGGAAGAAGGAGGATG 59.592 45.833 0.00 0.00 0.00 3.51
1220 1254 3.796111 TGAAGAGGAAGAAGGAGGATGT 58.204 45.455 0.00 0.00 0.00 3.06
1221 1255 3.517100 TGAAGAGGAAGAAGGAGGATGTG 59.483 47.826 0.00 0.00 0.00 3.21
1222 1256 2.476199 AGAGGAAGAAGGAGGATGTGG 58.524 52.381 0.00 0.00 0.00 4.17
1223 1257 2.045047 AGAGGAAGAAGGAGGATGTGGA 59.955 50.000 0.00 0.00 0.00 4.02
1224 1258 3.044894 GAGGAAGAAGGAGGATGTGGAT 58.955 50.000 0.00 0.00 0.00 3.41
1225 1259 2.776536 AGGAAGAAGGAGGATGTGGATG 59.223 50.000 0.00 0.00 0.00 3.51
1226 1260 2.507471 GGAAGAAGGAGGATGTGGATGT 59.493 50.000 0.00 0.00 0.00 3.06
1227 1261 3.539604 GAAGAAGGAGGATGTGGATGTG 58.460 50.000 0.00 0.00 0.00 3.21
1228 1262 2.837947 AGAAGGAGGATGTGGATGTGA 58.162 47.619 0.00 0.00 0.00 3.58
1229 1263 3.391774 AGAAGGAGGATGTGGATGTGAT 58.608 45.455 0.00 0.00 0.00 3.06
1230 1264 3.390639 AGAAGGAGGATGTGGATGTGATC 59.609 47.826 0.00 0.00 0.00 2.92
1231 1265 2.767972 AGGAGGATGTGGATGTGATCA 58.232 47.619 0.00 0.00 0.00 2.92
1232 1266 3.117745 AGGAGGATGTGGATGTGATCAA 58.882 45.455 0.00 0.00 0.00 2.57
1233 1267 3.136077 AGGAGGATGTGGATGTGATCAAG 59.864 47.826 0.00 0.00 0.00 3.02
1234 1268 3.474600 GAGGATGTGGATGTGATCAAGG 58.525 50.000 0.00 0.00 0.00 3.61
1235 1269 2.174210 AGGATGTGGATGTGATCAAGGG 59.826 50.000 0.00 0.00 0.00 3.95
1236 1270 2.579873 GATGTGGATGTGATCAAGGGG 58.420 52.381 0.00 0.00 0.00 4.79
1237 1271 1.667595 TGTGGATGTGATCAAGGGGA 58.332 50.000 0.00 0.00 0.00 4.81
1238 1272 1.991813 TGTGGATGTGATCAAGGGGAA 59.008 47.619 0.00 0.00 0.00 3.97
1239 1273 2.025981 TGTGGATGTGATCAAGGGGAAG 60.026 50.000 0.00 0.00 0.00 3.46
1240 1274 2.239654 GTGGATGTGATCAAGGGGAAGA 59.760 50.000 0.00 0.00 0.00 2.87
1241 1275 2.918934 TGGATGTGATCAAGGGGAAGAA 59.081 45.455 0.00 0.00 0.00 2.52
1242 1276 3.282885 GGATGTGATCAAGGGGAAGAAC 58.717 50.000 0.00 0.00 0.00 3.01
1322 1356 1.373873 GGGAGGACGACGGAAACAC 60.374 63.158 0.00 0.00 0.00 3.32
1325 1359 0.666577 GAGGACGACGGAAACACCAG 60.667 60.000 0.00 0.00 38.90 4.00
1346 1380 1.877443 TCACGACGACAGTTCTGATGA 59.123 47.619 0.00 0.00 0.00 2.92
1377 1411 1.880675 GAAGAGGAGTCTGACGACACA 59.119 52.381 1.52 0.00 42.73 3.72
1378 1412 1.982660 AGAGGAGTCTGACGACACAA 58.017 50.000 1.52 0.00 42.73 3.33
1379 1413 1.609555 AGAGGAGTCTGACGACACAAC 59.390 52.381 1.52 0.00 42.73 3.32
1380 1414 1.337071 GAGGAGTCTGACGACACAACA 59.663 52.381 1.52 0.00 42.73 3.33
1381 1415 1.338337 AGGAGTCTGACGACACAACAG 59.662 52.381 1.52 0.00 42.73 3.16
1382 1416 1.337071 GGAGTCTGACGACACAACAGA 59.663 52.381 1.52 0.00 42.73 3.41
1461 1504 1.881903 CTGACGAGGCAGAGCAGGAA 61.882 60.000 0.00 0.00 38.14 3.36
1513 1598 4.314440 GGCAGGACCAGCGTGTCA 62.314 66.667 2.39 0.00 36.99 3.58
1576 1661 1.153667 GTCGAGGGCTTGCAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
1579 1664 1.220477 GAGGGCTTGCAGAGAGTCC 59.780 63.158 0.00 0.00 39.22 3.85
1581 1666 2.817396 GGCTTGCAGAGAGTCCGC 60.817 66.667 0.00 0.00 0.00 5.54
1847 1932 2.047274 CAGAAGGCCGGCGAAGAA 60.047 61.111 22.54 0.00 0.00 2.52
2101 2189 1.154413 AAGAATCGCGCTGCAAACG 60.154 52.632 5.56 4.50 0.00 3.60
2205 2293 2.134789 AGGACATCCCTTGCAATGAC 57.865 50.000 0.00 0.00 44.85 3.06
2208 2296 2.019984 GACATCCCTTGCAATGACCTC 58.980 52.381 0.00 0.00 0.00 3.85
2215 2303 1.280133 CTTGCAATGACCTCCTCTCCA 59.720 52.381 0.00 0.00 0.00 3.86
2216 2304 1.361204 TGCAATGACCTCCTCTCCAA 58.639 50.000 0.00 0.00 0.00 3.53
2418 2506 1.446792 CAACGCTCACAGCTCCGAT 60.447 57.895 0.00 0.00 39.60 4.18
2595 3126 8.901472 TCTAGCATACCAATGTCCTTATAGAT 57.099 34.615 0.00 0.00 35.38 1.98
2596 3127 9.990868 TCTAGCATACCAATGTCCTTATAGATA 57.009 33.333 0.00 0.00 35.38 1.98
2598 3129 8.671987 AGCATACCAATGTCCTTATAGATACT 57.328 34.615 0.00 0.00 35.38 2.12
2599 3130 8.535335 AGCATACCAATGTCCTTATAGATACTG 58.465 37.037 0.00 0.00 35.38 2.74
2629 3160 7.437748 AGCTAGTGAGTCATATGAAATACCAC 58.562 38.462 7.07 10.64 0.00 4.16
2630 3161 6.647067 GCTAGTGAGTCATATGAAATACCACC 59.353 42.308 7.07 0.00 0.00 4.61
2631 3162 6.560003 AGTGAGTCATATGAAATACCACCA 57.440 37.500 7.07 0.00 0.00 4.17
2632 3163 6.957631 AGTGAGTCATATGAAATACCACCAA 58.042 36.000 7.07 0.00 0.00 3.67
2634 3165 7.554118 AGTGAGTCATATGAAATACCACCAAAG 59.446 37.037 7.07 0.00 0.00 2.77
2635 3166 7.336931 GTGAGTCATATGAAATACCACCAAAGT 59.663 37.037 7.07 0.00 0.00 2.66
2636 3167 7.888021 TGAGTCATATGAAATACCACCAAAGTT 59.112 33.333 7.07 0.00 0.00 2.66
2638 3169 9.174166 AGTCATATGAAATACCACCAAAGTTAC 57.826 33.333 7.07 0.00 0.00 2.50
2639 3170 9.174166 GTCATATGAAATACCACCAAAGTTACT 57.826 33.333 7.07 0.00 0.00 2.24
2644 3175 8.528044 TGAAATACCACCAAAGTTACTTTTCT 57.472 30.769 7.71 0.00 30.60 2.52
2647 3178 8.528044 AATACCACCAAAGTTACTTTTCTTGA 57.472 30.769 7.71 0.00 30.60 3.02
2648 3179 6.844097 ACCACCAAAGTTACTTTTCTTGAA 57.156 33.333 7.71 0.00 30.60 2.69
2649 3180 6.863275 ACCACCAAAGTTACTTTTCTTGAAG 58.137 36.000 7.71 0.00 30.60 3.02
2650 3181 5.748630 CCACCAAAGTTACTTTTCTTGAAGC 59.251 40.000 7.71 0.00 30.60 3.86
2652 3183 6.253512 CACCAAAGTTACTTTTCTTGAAGCAC 59.746 38.462 7.71 0.00 30.60 4.40
2655 3186 7.330700 CCAAAGTTACTTTTCTTGAAGCACAAA 59.669 33.333 7.71 0.00 33.14 2.83
2656 3187 8.375465 CAAAGTTACTTTTCTTGAAGCACAAAG 58.625 33.333 7.71 8.75 33.14 2.77
2660 3191 2.071778 TTCTTGAAGCACAAAGGCCT 57.928 45.000 0.00 0.00 38.08 5.19
2662 3193 1.956477 TCTTGAAGCACAAAGGCCTTC 59.044 47.619 20.79 6.08 38.08 3.46
2664 3195 1.774110 TGAAGCACAAAGGCCTTCAA 58.226 45.000 20.79 0.00 32.20 2.69
2665 3196 2.318908 TGAAGCACAAAGGCCTTCAAT 58.681 42.857 20.79 4.16 32.20 2.57
2676 3497 7.856894 CACAAAGGCCTTCAATTTAAAATGTTG 59.143 33.333 20.79 10.42 0.00 3.33
3146 4117 8.634475 TCAATACTTCTTGTAATCGACTCATG 57.366 34.615 0.00 0.00 34.45 3.07
3147 4118 8.466798 TCAATACTTCTTGTAATCGACTCATGA 58.533 33.333 0.00 0.00 34.45 3.07
3148 4119 9.254133 CAATACTTCTTGTAATCGACTCATGAT 57.746 33.333 0.00 0.00 34.45 2.45
3225 4198 0.108186 TCGCGAGCTGAACATGGATT 60.108 50.000 3.71 0.00 0.00 3.01
3953 4926 2.288458 TGAAGTTCGTACAAAAAGGCGG 59.712 45.455 0.00 0.00 0.00 6.13
4033 5006 2.750712 GCCTGTTACTTCCGGCAAATTA 59.249 45.455 0.00 0.00 42.06 1.40
4094 5067 3.509967 ACGTGACAGATGTGATGGTAGAA 59.490 43.478 0.00 0.00 0.00 2.10
4139 5112 4.081531 CCTTTTGTGCACATCCATAATGGT 60.082 41.667 22.39 0.00 39.90 3.55
4278 5251 6.540914 ACGTCCTCAAAAAGAAAAGACACATA 59.459 34.615 0.00 0.00 0.00 2.29
4295 5268 2.076100 CATAGCGGCACTTTTGAGTCA 58.924 47.619 1.45 0.00 0.00 3.41
4336 5309 1.065928 CTGTACATCCGTCCCTCGC 59.934 63.158 0.00 0.00 38.35 5.03
4377 5350 6.463995 TGCCAAAAGAAGTAACATCTGTTT 57.536 33.333 0.20 0.00 39.31 2.83
4543 5516 2.030540 TCATGCAACAGCTGAGAAAAGC 60.031 45.455 23.35 14.19 43.88 3.51
4572 5545 4.534103 ACTGGACTAAAGGCAAAGAGATCT 59.466 41.667 0.00 0.00 0.00 2.75
4832 5806 2.932614 CCTAATCGCAGAAGGAACACAG 59.067 50.000 0.00 0.00 43.58 3.66
4907 5881 0.823356 TTTCAAGTGAGCCACAGCCC 60.823 55.000 7.86 0.00 41.25 5.19
5052 6026 8.062536 ACTTATAGATCTCTGGTAAGTGGAAGT 58.937 37.037 15.92 3.12 37.35 3.01
5062 6036 5.551233 TGGTAAGTGGAAGTTTCTGAGATG 58.449 41.667 0.00 0.00 0.00 2.90
5315 6290 6.053632 CCCCCTGCTCTTCAAAAATAAAAT 57.946 37.500 0.00 0.00 0.00 1.82
5319 6294 8.193438 CCCCTGCTCTTCAAAAATAAAATAGAG 58.807 37.037 0.00 0.00 0.00 2.43
5559 6544 3.181434 TGGTGTTCCCTTTTCTATGCAGT 60.181 43.478 0.00 0.00 0.00 4.40
5566 6551 6.313519 TCCCTTTTCTATGCAGTGTAGAAT 57.686 37.500 8.66 0.00 37.83 2.40
5889 6911 2.292569 CTGCAGTTTGACATGAGCTGTT 59.707 45.455 5.25 0.00 38.54 3.16
5894 6916 3.696051 AGTTTGACATGAGCTGTTGTTGT 59.304 39.130 0.00 0.00 38.54 3.32
5895 6917 4.158394 AGTTTGACATGAGCTGTTGTTGTT 59.842 37.500 0.00 0.00 38.54 2.83
5896 6918 3.696281 TGACATGAGCTGTTGTTGTTG 57.304 42.857 0.00 0.00 38.54 3.33
5897 6919 3.016031 TGACATGAGCTGTTGTTGTTGT 58.984 40.909 0.00 0.00 38.54 3.32
5898 6920 3.443329 TGACATGAGCTGTTGTTGTTGTT 59.557 39.130 0.00 0.00 38.54 2.83
5899 6921 3.772932 ACATGAGCTGTTGTTGTTGTTG 58.227 40.909 0.00 0.00 32.90 3.33
5900 6922 3.193267 ACATGAGCTGTTGTTGTTGTTGT 59.807 39.130 0.00 0.00 32.90 3.32
5901 6923 3.932545 TGAGCTGTTGTTGTTGTTGTT 57.067 38.095 0.00 0.00 0.00 2.83
5902 6924 3.573598 TGAGCTGTTGTTGTTGTTGTTG 58.426 40.909 0.00 0.00 0.00 3.33
5903 6925 3.005261 TGAGCTGTTGTTGTTGTTGTTGT 59.995 39.130 0.00 0.00 0.00 3.32
5904 6926 3.574614 AGCTGTTGTTGTTGTTGTTGTC 58.425 40.909 0.00 0.00 0.00 3.18
5905 6927 3.255642 AGCTGTTGTTGTTGTTGTTGTCT 59.744 39.130 0.00 0.00 0.00 3.41
5906 6928 3.364621 GCTGTTGTTGTTGTTGTTGTCTG 59.635 43.478 0.00 0.00 0.00 3.51
5907 6929 4.793071 CTGTTGTTGTTGTTGTTGTCTGA 58.207 39.130 0.00 0.00 0.00 3.27
5908 6930 5.188327 TGTTGTTGTTGTTGTTGTCTGAA 57.812 34.783 0.00 0.00 0.00 3.02
5909 6931 4.979197 TGTTGTTGTTGTTGTTGTCTGAAC 59.021 37.500 0.00 0.00 0.00 3.18
5910 6932 5.219633 GTTGTTGTTGTTGTTGTCTGAACT 58.780 37.500 0.00 0.00 0.00 3.01
5911 6933 5.446143 TGTTGTTGTTGTTGTCTGAACTT 57.554 34.783 0.00 0.00 0.00 2.66
5912 6934 5.218885 TGTTGTTGTTGTTGTCTGAACTTG 58.781 37.500 0.00 0.00 0.00 3.16
5913 6935 3.832276 TGTTGTTGTTGTCTGAACTTGC 58.168 40.909 0.00 0.00 0.00 4.01
5914 6936 3.254411 TGTTGTTGTTGTCTGAACTTGCA 59.746 39.130 0.00 0.00 0.00 4.08
5915 6937 4.082300 TGTTGTTGTTGTCTGAACTTGCAT 60.082 37.500 0.00 0.00 0.00 3.96
5916 6938 5.124617 TGTTGTTGTTGTCTGAACTTGCATA 59.875 36.000 0.00 0.00 0.00 3.14
5917 6939 5.168526 TGTTGTTGTCTGAACTTGCATAC 57.831 39.130 0.00 0.00 0.00 2.39
5918 6940 4.881273 TGTTGTTGTCTGAACTTGCATACT 59.119 37.500 0.00 0.00 0.00 2.12
5919 6941 5.356751 TGTTGTTGTCTGAACTTGCATACTT 59.643 36.000 0.00 0.00 0.00 2.24
5920 6942 5.422666 TGTTGTCTGAACTTGCATACTTG 57.577 39.130 0.00 0.00 0.00 3.16
5921 6943 5.122519 TGTTGTCTGAACTTGCATACTTGA 58.877 37.500 0.00 0.00 0.00 3.02
5922 6944 5.588246 TGTTGTCTGAACTTGCATACTTGAA 59.412 36.000 0.00 0.00 0.00 2.69
5923 6945 6.094742 TGTTGTCTGAACTTGCATACTTGAAA 59.905 34.615 0.00 0.00 0.00 2.69
5924 6946 6.882610 TGTCTGAACTTGCATACTTGAAAT 57.117 33.333 0.00 0.00 0.00 2.17
5925 6947 7.275888 TGTCTGAACTTGCATACTTGAAATT 57.724 32.000 0.00 0.00 0.00 1.82
5926 6948 7.140705 TGTCTGAACTTGCATACTTGAAATTG 58.859 34.615 0.00 0.00 0.00 2.32
5927 6949 7.013178 TGTCTGAACTTGCATACTTGAAATTGA 59.987 33.333 0.00 0.00 0.00 2.57
5928 6950 7.862372 GTCTGAACTTGCATACTTGAAATTGAA 59.138 33.333 0.00 0.00 0.00 2.69
5929 6951 7.862372 TCTGAACTTGCATACTTGAAATTGAAC 59.138 33.333 0.00 0.00 0.00 3.18
5959 6981 1.878088 ACTGCAGTTTGACATGAGCTG 59.122 47.619 15.25 0.00 0.00 4.24
5961 6983 2.292569 CTGCAGTTTGACATGAGCTGTT 59.707 45.455 5.25 0.00 38.54 3.16
5970 6992 3.443329 TGACATGAGCTGTTGTTGTTGTT 59.557 39.130 0.00 0.00 38.54 2.83
5971 6993 3.772932 ACATGAGCTGTTGTTGTTGTTG 58.227 40.909 0.00 0.00 32.90 3.33
5972 6994 3.193267 ACATGAGCTGTTGTTGTTGTTGT 59.807 39.130 0.00 0.00 32.90 3.32
5988 7010 5.207768 GTTGTTGTCTGAACTTGCATACTG 58.792 41.667 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.049433 AGGTTCGCGGTTCGTCAG 60.049 61.111 6.13 0.00 39.67 3.51
455 459 3.898640 GCCGTCGCGTGAACGATC 61.899 66.667 18.89 7.62 45.06 3.69
473 477 2.338500 CACAGTTCTACTTCTTCGGCC 58.662 52.381 0.00 0.00 0.00 6.13
474 478 2.288886 ACCACAGTTCTACTTCTTCGGC 60.289 50.000 0.00 0.00 0.00 5.54
513 517 3.701241 GTCTCTTCATCTCCATCGTCAC 58.299 50.000 0.00 0.00 0.00 3.67
579 583 1.055040 CATCACATCCTCCTCCTCCC 58.945 60.000 0.00 0.00 0.00 4.30
653 669 3.303938 TCTTCCCTCTCATCACATCCTC 58.696 50.000 0.00 0.00 0.00 3.71
655 671 3.198635 TGTTCTTCCCTCTCATCACATCC 59.801 47.826 0.00 0.00 0.00 3.51
656 672 4.478206 TGTTCTTCCCTCTCATCACATC 57.522 45.455 0.00 0.00 0.00 3.06
657 673 4.324099 CCTTGTTCTTCCCTCTCATCACAT 60.324 45.833 0.00 0.00 0.00 3.21
658 674 3.008375 CCTTGTTCTTCCCTCTCATCACA 59.992 47.826 0.00 0.00 0.00 3.58
659 675 3.261897 TCCTTGTTCTTCCCTCTCATCAC 59.738 47.826 0.00 0.00 0.00 3.06
660 676 3.520696 TCCTTGTTCTTCCCTCTCATCA 58.479 45.455 0.00 0.00 0.00 3.07
661 677 4.163078 TCATCCTTGTTCTTCCCTCTCATC 59.837 45.833 0.00 0.00 0.00 2.92
662 678 4.107072 TCATCCTTGTTCTTCCCTCTCAT 58.893 43.478 0.00 0.00 0.00 2.90
663 679 3.520696 TCATCCTTGTTCTTCCCTCTCA 58.479 45.455 0.00 0.00 0.00 3.27
664 680 4.163078 TCATCATCCTTGTTCTTCCCTCTC 59.837 45.833 0.00 0.00 0.00 3.20
665 681 4.107072 TCATCATCCTTGTTCTTCCCTCT 58.893 43.478 0.00 0.00 0.00 3.69
666 682 4.494091 TCATCATCCTTGTTCTTCCCTC 57.506 45.455 0.00 0.00 0.00 4.30
667 683 4.934797 TTCATCATCCTTGTTCTTCCCT 57.065 40.909 0.00 0.00 0.00 4.20
668 684 5.012893 ACTTTCATCATCCTTGTTCTTCCC 58.987 41.667 0.00 0.00 0.00 3.97
669 685 5.707298 TCACTTTCATCATCCTTGTTCTTCC 59.293 40.000 0.00 0.00 0.00 3.46
670 686 6.808008 TCACTTTCATCATCCTTGTTCTTC 57.192 37.500 0.00 0.00 0.00 2.87
671 687 7.000472 TCTTCACTTTCATCATCCTTGTTCTT 59.000 34.615 0.00 0.00 0.00 2.52
672 688 6.537355 TCTTCACTTTCATCATCCTTGTTCT 58.463 36.000 0.00 0.00 0.00 3.01
673 689 6.808008 TCTTCACTTTCATCATCCTTGTTC 57.192 37.500 0.00 0.00 0.00 3.18
674 690 8.734386 GTTATCTTCACTTTCATCATCCTTGTT 58.266 33.333 0.00 0.00 0.00 2.83
675 691 7.065085 CGTTATCTTCACTTTCATCATCCTTGT 59.935 37.037 0.00 0.00 0.00 3.16
676 692 7.278646 TCGTTATCTTCACTTTCATCATCCTTG 59.721 37.037 0.00 0.00 0.00 3.61
677 693 7.331026 TCGTTATCTTCACTTTCATCATCCTT 58.669 34.615 0.00 0.00 0.00 3.36
678 694 6.878317 TCGTTATCTTCACTTTCATCATCCT 58.122 36.000 0.00 0.00 0.00 3.24
679 695 6.201806 CCTCGTTATCTTCACTTTCATCATCC 59.798 42.308 0.00 0.00 0.00 3.51
680 696 6.980978 TCCTCGTTATCTTCACTTTCATCATC 59.019 38.462 0.00 0.00 0.00 2.92
681 697 6.878317 TCCTCGTTATCTTCACTTTCATCAT 58.122 36.000 0.00 0.00 0.00 2.45
682 698 6.280855 TCCTCGTTATCTTCACTTTCATCA 57.719 37.500 0.00 0.00 0.00 3.07
683 699 5.751028 CCTCCTCGTTATCTTCACTTTCATC 59.249 44.000 0.00 0.00 0.00 2.92
684 700 5.422331 TCCTCCTCGTTATCTTCACTTTCAT 59.578 40.000 0.00 0.00 0.00 2.57
685 701 4.770531 TCCTCCTCGTTATCTTCACTTTCA 59.229 41.667 0.00 0.00 0.00 2.69
686 702 5.326200 TCCTCCTCGTTATCTTCACTTTC 57.674 43.478 0.00 0.00 0.00 2.62
687 703 4.160626 CCTCCTCCTCGTTATCTTCACTTT 59.839 45.833 0.00 0.00 0.00 2.66
688 704 3.702045 CCTCCTCCTCGTTATCTTCACTT 59.298 47.826 0.00 0.00 0.00 3.16
689 705 3.053544 TCCTCCTCCTCGTTATCTTCACT 60.054 47.826 0.00 0.00 0.00 3.41
690 706 3.288964 TCCTCCTCCTCGTTATCTTCAC 58.711 50.000 0.00 0.00 0.00 3.18
691 707 3.556999 CTCCTCCTCCTCGTTATCTTCA 58.443 50.000 0.00 0.00 0.00 3.02
692 708 2.888414 CCTCCTCCTCCTCGTTATCTTC 59.112 54.545 0.00 0.00 0.00 2.87
693 709 2.514582 TCCTCCTCCTCCTCGTTATCTT 59.485 50.000 0.00 0.00 0.00 2.40
694 710 2.136863 TCCTCCTCCTCCTCGTTATCT 58.863 52.381 0.00 0.00 0.00 1.98
695 711 2.660670 TCCTCCTCCTCCTCGTTATC 57.339 55.000 0.00 0.00 0.00 1.75
696 712 3.562609 GCTATCCTCCTCCTCCTCGTTAT 60.563 52.174 0.00 0.00 0.00 1.89
697 713 2.224818 GCTATCCTCCTCCTCCTCGTTA 60.225 54.545 0.00 0.00 0.00 3.18
698 714 1.479757 GCTATCCTCCTCCTCCTCGTT 60.480 57.143 0.00 0.00 0.00 3.85
699 715 0.111639 GCTATCCTCCTCCTCCTCGT 59.888 60.000 0.00 0.00 0.00 4.18
700 716 0.958382 CGCTATCCTCCTCCTCCTCG 60.958 65.000 0.00 0.00 0.00 4.63
706 722 0.610785 CCTCCTCGCTATCCTCCTCC 60.611 65.000 0.00 0.00 0.00 4.30
715 731 0.111446 CATCCTCCTCCTCCTCGCTA 59.889 60.000 0.00 0.00 0.00 4.26
716 732 1.152567 CATCCTCCTCCTCCTCGCT 60.153 63.158 0.00 0.00 0.00 4.93
717 733 1.456705 ACATCCTCCTCCTCCTCGC 60.457 63.158 0.00 0.00 0.00 5.03
718 734 0.106469 TCACATCCTCCTCCTCCTCG 60.106 60.000 0.00 0.00 0.00 4.63
747 763 4.692625 CGTCACTTTCATCATCCTTGTTCT 59.307 41.667 0.00 0.00 0.00 3.01
982 998 1.969923 CATCACATCCTCCTCCTCCTC 59.030 57.143 0.00 0.00 0.00 3.71
983 999 1.577729 TCATCACATCCTCCTCCTCCT 59.422 52.381 0.00 0.00 0.00 3.69
984 1000 1.969923 CTCATCACATCCTCCTCCTCC 59.030 57.143 0.00 0.00 0.00 4.30
985 1001 2.892852 CTCTCATCACATCCTCCTCCTC 59.107 54.545 0.00 0.00 0.00 3.71
986 1002 2.426121 CCTCTCATCACATCCTCCTCCT 60.426 54.545 0.00 0.00 0.00 3.69
987 1003 1.969923 CCTCTCATCACATCCTCCTCC 59.030 57.143 0.00 0.00 0.00 4.30
988 1004 1.969923 CCCTCTCATCACATCCTCCTC 59.030 57.143 0.00 0.00 0.00 3.71
989 1005 1.577729 TCCCTCTCATCACATCCTCCT 59.422 52.381 0.00 0.00 0.00 3.69
990 1006 2.094100 TCCCTCTCATCACATCCTCC 57.906 55.000 0.00 0.00 0.00 4.30
991 1007 3.303938 TCTTCCCTCTCATCACATCCTC 58.696 50.000 0.00 0.00 0.00 3.71
992 1008 3.411454 TCTTCCCTCTCATCACATCCT 57.589 47.619 0.00 0.00 0.00 3.24
993 1009 3.198635 TGTTCTTCCCTCTCATCACATCC 59.801 47.826 0.00 0.00 0.00 3.51
994 1010 4.478206 TGTTCTTCCCTCTCATCACATC 57.522 45.455 0.00 0.00 0.00 3.06
995 1011 4.324099 CCTTGTTCTTCCCTCTCATCACAT 60.324 45.833 0.00 0.00 0.00 3.21
996 1012 3.008375 CCTTGTTCTTCCCTCTCATCACA 59.992 47.826 0.00 0.00 0.00 3.58
997 1013 3.261897 TCCTTGTTCTTCCCTCTCATCAC 59.738 47.826 0.00 0.00 0.00 3.06
998 1014 3.520696 TCCTTGTTCTTCCCTCTCATCA 58.479 45.455 0.00 0.00 0.00 3.07
999 1015 4.163078 TCATCCTTGTTCTTCCCTCTCATC 59.837 45.833 0.00 0.00 0.00 2.92
1000 1016 4.107072 TCATCCTTGTTCTTCCCTCTCAT 58.893 43.478 0.00 0.00 0.00 2.90
1001 1017 3.520696 TCATCCTTGTTCTTCCCTCTCA 58.479 45.455 0.00 0.00 0.00 3.27
1002 1018 4.163078 TCATCATCCTTGTTCTTCCCTCTC 59.837 45.833 0.00 0.00 0.00 3.20
1003 1019 4.107072 TCATCATCCTTGTTCTTCCCTCT 58.893 43.478 0.00 0.00 0.00 3.69
1004 1020 4.163078 TCTCATCATCCTTGTTCTTCCCTC 59.837 45.833 0.00 0.00 0.00 4.30
1005 1021 4.107072 TCTCATCATCCTTGTTCTTCCCT 58.893 43.478 0.00 0.00 0.00 4.20
1006 1022 4.080638 ACTCTCATCATCCTTGTTCTTCCC 60.081 45.833 0.00 0.00 0.00 3.97
1007 1023 4.874966 CACTCTCATCATCCTTGTTCTTCC 59.125 45.833 0.00 0.00 0.00 3.46
1008 1024 5.580297 GTCACTCTCATCATCCTTGTTCTTC 59.420 44.000 0.00 0.00 0.00 2.87
1009 1025 5.486526 GTCACTCTCATCATCCTTGTTCTT 58.513 41.667 0.00 0.00 0.00 2.52
1010 1026 4.381398 CGTCACTCTCATCATCCTTGTTCT 60.381 45.833 0.00 0.00 0.00 3.01
1011 1027 3.862267 CGTCACTCTCATCATCCTTGTTC 59.138 47.826 0.00 0.00 0.00 3.18
1012 1028 3.511540 TCGTCACTCTCATCATCCTTGTT 59.488 43.478 0.00 0.00 0.00 2.83
1013 1029 3.092301 TCGTCACTCTCATCATCCTTGT 58.908 45.455 0.00 0.00 0.00 3.16
1014 1030 3.790152 TCGTCACTCTCATCATCCTTG 57.210 47.619 0.00 0.00 0.00 3.61
1015 1031 5.506483 CGTTATCGTCACTCTCATCATCCTT 60.506 44.000 0.00 0.00 0.00 3.36
1016 1032 4.023622 CGTTATCGTCACTCTCATCATCCT 60.024 45.833 0.00 0.00 0.00 3.24
1017 1033 4.023963 TCGTTATCGTCACTCTCATCATCC 60.024 45.833 0.00 0.00 38.33 3.51
1018 1034 5.096954 TCGTTATCGTCACTCTCATCATC 57.903 43.478 0.00 0.00 38.33 2.92
1019 1035 4.023622 CCTCGTTATCGTCACTCTCATCAT 60.024 45.833 0.00 0.00 38.33 2.45
1020 1036 3.312697 CCTCGTTATCGTCACTCTCATCA 59.687 47.826 0.00 0.00 38.33 3.07
1021 1037 3.560481 TCCTCGTTATCGTCACTCTCATC 59.440 47.826 0.00 0.00 38.33 2.92
1022 1038 3.542648 TCCTCGTTATCGTCACTCTCAT 58.457 45.455 0.00 0.00 38.33 2.90
1023 1039 2.937149 CTCCTCGTTATCGTCACTCTCA 59.063 50.000 0.00 0.00 38.33 3.27
1024 1040 2.288458 CCTCCTCGTTATCGTCACTCTC 59.712 54.545 0.00 0.00 38.33 3.20
1025 1041 2.093075 TCCTCCTCGTTATCGTCACTCT 60.093 50.000 0.00 0.00 38.33 3.24
1026 1042 2.286872 TCCTCCTCGTTATCGTCACTC 58.713 52.381 0.00 0.00 38.33 3.51
1027 1043 2.290464 CTCCTCCTCGTTATCGTCACT 58.710 52.381 0.00 0.00 38.33 3.41
1028 1044 1.334243 CCTCCTCCTCGTTATCGTCAC 59.666 57.143 0.00 0.00 38.33 3.67
1029 1045 1.211212 TCCTCCTCCTCGTTATCGTCA 59.789 52.381 0.00 0.00 38.33 4.35
1030 1046 1.874872 CTCCTCCTCCTCGTTATCGTC 59.125 57.143 0.00 0.00 38.33 4.20
1038 1054 0.539438 CATCCTCCTCCTCCTCCTCG 60.539 65.000 0.00 0.00 0.00 4.63
1074 1093 4.060900 CCACATTCCTCCTCATTACATCG 58.939 47.826 0.00 0.00 0.00 3.84
1085 1107 3.565764 TCATCACATCCACATTCCTCC 57.434 47.619 0.00 0.00 0.00 4.30
1142 1176 3.199508 CACATCCACATCCTCCTTCTTCT 59.800 47.826 0.00 0.00 0.00 2.85
1183 1217 2.173356 TCTTCATCACATCATCACCCCC 59.827 50.000 0.00 0.00 0.00 5.40
1184 1218 3.474600 CTCTTCATCACATCATCACCCC 58.525 50.000 0.00 0.00 0.00 4.95
1185 1219 3.135348 TCCTCTTCATCACATCATCACCC 59.865 47.826 0.00 0.00 0.00 4.61
1186 1220 4.412796 TCCTCTTCATCACATCATCACC 57.587 45.455 0.00 0.00 0.00 4.02
1187 1221 5.668471 TCTTCCTCTTCATCACATCATCAC 58.332 41.667 0.00 0.00 0.00 3.06
1188 1222 5.945144 TCTTCCTCTTCATCACATCATCA 57.055 39.130 0.00 0.00 0.00 3.07
1189 1223 5.759273 CCTTCTTCCTCTTCATCACATCATC 59.241 44.000 0.00 0.00 0.00 2.92
1190 1224 5.427806 TCCTTCTTCCTCTTCATCACATCAT 59.572 40.000 0.00 0.00 0.00 2.45
1191 1225 4.779489 TCCTTCTTCCTCTTCATCACATCA 59.221 41.667 0.00 0.00 0.00 3.07
1192 1226 5.350504 TCCTTCTTCCTCTTCATCACATC 57.649 43.478 0.00 0.00 0.00 3.06
1193 1227 4.163839 CCTCCTTCTTCCTCTTCATCACAT 59.836 45.833 0.00 0.00 0.00 3.21
1194 1228 3.517100 CCTCCTTCTTCCTCTTCATCACA 59.483 47.826 0.00 0.00 0.00 3.58
1195 1229 3.772025 TCCTCCTTCTTCCTCTTCATCAC 59.228 47.826 0.00 0.00 0.00 3.06
1196 1230 4.066578 TCCTCCTTCTTCCTCTTCATCA 57.933 45.455 0.00 0.00 0.00 3.07
1197 1231 4.408596 ACATCCTCCTTCTTCCTCTTCATC 59.591 45.833 0.00 0.00 0.00 2.92
1198 1232 4.163839 CACATCCTCCTTCTTCCTCTTCAT 59.836 45.833 0.00 0.00 0.00 2.57
1199 1233 3.517100 CACATCCTCCTTCTTCCTCTTCA 59.483 47.826 0.00 0.00 0.00 3.02
1200 1234 3.118445 CCACATCCTCCTTCTTCCTCTTC 60.118 52.174 0.00 0.00 0.00 2.87
1201 1235 2.843113 CCACATCCTCCTTCTTCCTCTT 59.157 50.000 0.00 0.00 0.00 2.85
1202 1236 2.045047 TCCACATCCTCCTTCTTCCTCT 59.955 50.000 0.00 0.00 0.00 3.69
1203 1237 2.472029 TCCACATCCTCCTTCTTCCTC 58.528 52.381 0.00 0.00 0.00 3.71
1204 1238 2.649742 TCCACATCCTCCTTCTTCCT 57.350 50.000 0.00 0.00 0.00 3.36
1205 1239 2.507471 ACATCCACATCCTCCTTCTTCC 59.493 50.000 0.00 0.00 0.00 3.46
1206 1240 3.198635 TCACATCCACATCCTCCTTCTTC 59.801 47.826 0.00 0.00 0.00 2.87
1207 1241 3.184628 TCACATCCACATCCTCCTTCTT 58.815 45.455 0.00 0.00 0.00 2.52
1208 1242 2.837947 TCACATCCACATCCTCCTTCT 58.162 47.619 0.00 0.00 0.00 2.85
1209 1243 3.135348 TGATCACATCCACATCCTCCTTC 59.865 47.826 0.00 0.00 0.00 3.46
1210 1244 3.117745 TGATCACATCCACATCCTCCTT 58.882 45.455 0.00 0.00 0.00 3.36
1211 1245 2.767972 TGATCACATCCACATCCTCCT 58.232 47.619 0.00 0.00 0.00 3.69
1212 1246 3.474600 CTTGATCACATCCACATCCTCC 58.525 50.000 0.00 0.00 0.00 4.30
1213 1247 3.474600 CCTTGATCACATCCACATCCTC 58.525 50.000 0.00 0.00 0.00 3.71
1214 1248 2.174210 CCCTTGATCACATCCACATCCT 59.826 50.000 0.00 0.00 0.00 3.24
1215 1249 2.579873 CCCTTGATCACATCCACATCC 58.420 52.381 0.00 0.00 0.00 3.51
1216 1250 2.173356 TCCCCTTGATCACATCCACATC 59.827 50.000 0.00 0.00 0.00 3.06
1217 1251 2.207988 TCCCCTTGATCACATCCACAT 58.792 47.619 0.00 0.00 0.00 3.21
1218 1252 1.667595 TCCCCTTGATCACATCCACA 58.332 50.000 0.00 0.00 0.00 4.17
1219 1253 2.239654 TCTTCCCCTTGATCACATCCAC 59.760 50.000 0.00 0.00 0.00 4.02
1220 1254 2.561187 TCTTCCCCTTGATCACATCCA 58.439 47.619 0.00 0.00 0.00 3.41
1221 1255 3.282885 GTTCTTCCCCTTGATCACATCC 58.717 50.000 0.00 0.00 0.00 3.51
1222 1256 3.955471 TGTTCTTCCCCTTGATCACATC 58.045 45.455 0.00 0.00 0.00 3.06
1223 1257 4.338879 CTTGTTCTTCCCCTTGATCACAT 58.661 43.478 0.00 0.00 0.00 3.21
1224 1258 3.498481 CCTTGTTCTTCCCCTTGATCACA 60.498 47.826 0.00 0.00 0.00 3.58
1225 1259 3.084786 CCTTGTTCTTCCCCTTGATCAC 58.915 50.000 0.00 0.00 0.00 3.06
1226 1260 2.986019 TCCTTGTTCTTCCCCTTGATCA 59.014 45.455 0.00 0.00 0.00 2.92
1227 1261 3.615155 CTCCTTGTTCTTCCCCTTGATC 58.385 50.000 0.00 0.00 0.00 2.92
1228 1262 2.310052 CCTCCTTGTTCTTCCCCTTGAT 59.690 50.000 0.00 0.00 0.00 2.57
1229 1263 1.705186 CCTCCTTGTTCTTCCCCTTGA 59.295 52.381 0.00 0.00 0.00 3.02
1230 1264 1.705186 TCCTCCTTGTTCTTCCCCTTG 59.295 52.381 0.00 0.00 0.00 3.61
1231 1265 2.133858 TCCTCCTTGTTCTTCCCCTT 57.866 50.000 0.00 0.00 0.00 3.95
1232 1266 1.918957 CATCCTCCTTGTTCTTCCCCT 59.081 52.381 0.00 0.00 0.00 4.79
1233 1267 1.916181 TCATCCTCCTTGTTCTTCCCC 59.084 52.381 0.00 0.00 0.00 4.81
1234 1268 2.305927 TGTCATCCTCCTTGTTCTTCCC 59.694 50.000 0.00 0.00 0.00 3.97
1235 1269 3.703001 TGTCATCCTCCTTGTTCTTCC 57.297 47.619 0.00 0.00 0.00 3.46
1236 1270 4.397417 CCATTGTCATCCTCCTTGTTCTTC 59.603 45.833 0.00 0.00 0.00 2.87
1237 1271 4.202609 ACCATTGTCATCCTCCTTGTTCTT 60.203 41.667 0.00 0.00 0.00 2.52
1238 1272 3.331889 ACCATTGTCATCCTCCTTGTTCT 59.668 43.478 0.00 0.00 0.00 3.01
1239 1273 3.690460 ACCATTGTCATCCTCCTTGTTC 58.310 45.455 0.00 0.00 0.00 3.18
1240 1274 3.814504 ACCATTGTCATCCTCCTTGTT 57.185 42.857 0.00 0.00 0.00 2.83
1241 1275 4.927267 TTACCATTGTCATCCTCCTTGT 57.073 40.909 0.00 0.00 0.00 3.16
1242 1276 5.471456 GCTATTACCATTGTCATCCTCCTTG 59.529 44.000 0.00 0.00 0.00 3.61
1346 1380 1.620819 ACTCCTCTTCGTCAGCATTGT 59.379 47.619 0.00 0.00 0.00 2.71
1377 1411 4.017958 TCCTCCTCTGTCTCTGTATCTGTT 60.018 45.833 0.00 0.00 0.00 3.16
1378 1412 3.525609 TCCTCCTCTGTCTCTGTATCTGT 59.474 47.826 0.00 0.00 0.00 3.41
1379 1413 4.136796 CTCCTCCTCTGTCTCTGTATCTG 58.863 52.174 0.00 0.00 0.00 2.90
1380 1414 3.138283 CCTCCTCCTCTGTCTCTGTATCT 59.862 52.174 0.00 0.00 0.00 1.98
1381 1415 3.137544 TCCTCCTCCTCTGTCTCTGTATC 59.862 52.174 0.00 0.00 0.00 2.24
1382 1416 3.127250 TCCTCCTCCTCTGTCTCTGTAT 58.873 50.000 0.00 0.00 0.00 2.29
1421 1464 4.037222 AGATTCTTCTTCTTCCTCCTCCC 58.963 47.826 0.00 0.00 0.00 4.30
1428 1471 4.429108 CCTCGTCAGATTCTTCTTCTTCC 58.571 47.826 0.00 0.00 0.00 3.46
1571 1656 0.329931 TCTCCTCTTGCGGACTCTCT 59.670 55.000 0.00 0.00 0.00 3.10
1572 1657 1.398692 ATCTCCTCTTGCGGACTCTC 58.601 55.000 0.00 0.00 0.00 3.20
1576 1661 0.456221 TCGAATCTCCTCTTGCGGAC 59.544 55.000 0.00 0.00 0.00 4.79
1579 1664 0.249238 CCCTCGAATCTCCTCTTGCG 60.249 60.000 0.00 0.00 0.00 4.85
1581 1666 1.490574 ACCCCTCGAATCTCCTCTTG 58.509 55.000 0.00 0.00 0.00 3.02
1676 1761 1.584380 CTTGTTGGAGCAGCTCAGGC 61.584 60.000 24.09 12.65 39.06 4.85
1847 1932 1.273886 GGCACCGTCTCTTCTTCTTCT 59.726 52.381 0.00 0.00 0.00 2.85
1892 1980 1.340211 GGTCGTCCTCTTCCTCTGAGA 60.340 57.143 6.17 0.00 33.68 3.27
2046 2134 0.320374 TAGAAGAACCAGCGTGGGTG 59.680 55.000 8.57 0.00 37.76 4.61
2058 2146 2.549349 GCGTCTTGGGTTGGTAGAAGAA 60.549 50.000 0.00 0.00 0.00 2.52
2074 2162 3.188786 GCGATTCTTGGCGCGTCT 61.189 61.111 13.81 0.00 43.96 4.18
2151 2239 1.550327 TCCTCTTGCGATGAGACAGT 58.450 50.000 0.00 0.00 33.68 3.55
2205 2293 3.489398 CGTCGAATAAGTTGGAGAGGAGG 60.489 52.174 0.00 0.00 0.00 4.30
2208 2296 2.481449 CCCGTCGAATAAGTTGGAGAGG 60.481 54.545 0.00 0.00 0.00 3.69
2349 2437 0.176680 CTCCCCACAGTTGATCCTCG 59.823 60.000 0.00 0.00 0.00 4.63
2418 2506 5.817784 ACTAGCAGAGAGTTAAGTACCTCA 58.182 41.667 0.00 0.00 30.75 3.86
2595 3126 8.211629 TCATATGACTCACTAGCTTCTACAGTA 58.788 37.037 0.00 0.00 0.00 2.74
2596 3127 7.057264 TCATATGACTCACTAGCTTCTACAGT 58.943 38.462 0.00 0.00 0.00 3.55
2597 3128 7.503521 TCATATGACTCACTAGCTTCTACAG 57.496 40.000 0.00 0.00 0.00 2.74
2598 3129 7.881775 TTCATATGACTCACTAGCTTCTACA 57.118 36.000 4.48 0.00 0.00 2.74
2629 3160 6.329496 TGTGCTTCAAGAAAAGTAACTTTGG 58.671 36.000 0.00 0.00 33.64 3.28
2630 3161 7.810766 TTGTGCTTCAAGAAAAGTAACTTTG 57.189 32.000 0.00 0.00 33.64 2.77
2631 3162 7.545615 CCTTTGTGCTTCAAGAAAAGTAACTTT 59.454 33.333 0.00 0.00 37.35 2.66
2632 3163 7.035612 CCTTTGTGCTTCAAGAAAAGTAACTT 58.964 34.615 0.00 0.00 37.35 2.66
2634 3165 5.232202 GCCTTTGTGCTTCAAGAAAAGTAAC 59.768 40.000 0.00 0.00 37.35 2.50
2635 3166 5.348164 GCCTTTGTGCTTCAAGAAAAGTAA 58.652 37.500 0.00 0.00 37.35 2.24
2636 3167 4.202111 GGCCTTTGTGCTTCAAGAAAAGTA 60.202 41.667 0.00 0.00 37.35 2.24
2638 3169 3.126073 GGCCTTTGTGCTTCAAGAAAAG 58.874 45.455 0.00 0.00 37.35 2.27
2639 3170 2.765699 AGGCCTTTGTGCTTCAAGAAAA 59.234 40.909 0.00 0.00 37.35 2.29
2641 3172 2.071778 AGGCCTTTGTGCTTCAAGAA 57.928 45.000 0.00 0.00 37.35 2.52
2642 3173 1.956477 GAAGGCCTTTGTGCTTCAAGA 59.044 47.619 21.54 0.00 37.35 3.02
2643 3174 1.682854 TGAAGGCCTTTGTGCTTCAAG 59.317 47.619 21.54 0.00 37.35 3.02
2644 3175 1.774110 TGAAGGCCTTTGTGCTTCAA 58.226 45.000 21.54 0.00 32.07 2.69
2647 3178 3.843893 AAATTGAAGGCCTTTGTGCTT 57.156 38.095 21.54 7.18 0.00 3.91
2648 3179 4.953940 TTAAATTGAAGGCCTTTGTGCT 57.046 36.364 21.54 7.48 0.00 4.40
2649 3180 6.017192 ACATTTTAAATTGAAGGCCTTTGTGC 60.017 34.615 21.54 7.26 0.00 4.57
2650 3181 7.495135 ACATTTTAAATTGAAGGCCTTTGTG 57.505 32.000 21.54 8.75 0.00 3.33
2652 3183 7.361894 CCAACATTTTAAATTGAAGGCCTTTG 58.638 34.615 21.54 12.08 0.00 2.77
2655 3186 5.003160 GCCAACATTTTAAATTGAAGGCCT 58.997 37.500 24.00 0.00 33.41 5.19
2656 3187 5.003160 AGCCAACATTTTAAATTGAAGGCC 58.997 37.500 27.14 18.09 37.17 5.19
2660 3191 7.663493 CCCCTTTAGCCAACATTTTAAATTGAA 59.337 33.333 15.19 0.00 0.00 2.69
2662 3193 6.374053 CCCCCTTTAGCCAACATTTTAAATTG 59.626 38.462 8.24 8.24 0.00 2.32
2664 3195 5.788014 TCCCCCTTTAGCCAACATTTTAAAT 59.212 36.000 0.00 0.00 0.00 1.40
2665 3196 5.155905 TCCCCCTTTAGCCAACATTTTAAA 58.844 37.500 0.00 0.00 0.00 1.52
2676 3497 0.547075 GGACTCTTCCCCCTTTAGCC 59.453 60.000 0.00 0.00 35.57 3.93
2759 3679 6.858478 GTGAAATGAAGTAGAAGGCTTTTGTC 59.142 38.462 0.00 0.00 0.00 3.18
2774 3694 8.123575 TGTTTGCATTTGATTTGTGAAATGAAG 58.876 29.630 0.00 0.00 40.53 3.02
3953 4926 4.884668 TGGTGTCCCGGATAGAATAATC 57.115 45.455 0.73 0.00 0.00 1.75
3971 4944 5.200483 TCTTCAAAGTTGTTCTGGAATGGT 58.800 37.500 0.00 0.00 0.00 3.55
4033 5006 4.617593 AGGAAAGAAATCCATGGCTTCAT 58.382 39.130 21.65 11.81 42.27 2.57
4139 5112 6.975196 TTGAGGGATTTTTGAAGAATGTCA 57.025 33.333 0.00 0.00 0.00 3.58
4151 5124 6.704056 TCTCTTAGTCCTTTGAGGGATTTT 57.296 37.500 0.00 0.00 37.73 1.82
4278 5251 0.106708 TCTGACTCAAAAGTGCCGCT 59.893 50.000 0.00 0.00 35.28 5.52
4295 5268 7.144661 CAGACGCAAGAGATATCTTGTATTCT 58.855 38.462 26.34 21.33 46.36 2.40
4336 5309 1.796459 GCAACTTTTTCATGCCAGCAG 59.204 47.619 0.00 0.00 34.03 4.24
4490 5463 4.580580 AGTGGTTCAAGAAACTGGCTAAAG 59.419 41.667 0.00 0.00 38.02 1.85
4543 5516 2.489971 TGCCTTTAGTCCAGTTGAACG 58.510 47.619 0.00 0.00 0.00 3.95
4572 5545 7.060421 GGGGAGATTTTTCCACTCATATACAA 58.940 38.462 0.00 0.00 37.68 2.41
4589 5562 0.996583 TGCGGGTTTTAGGGGAGATT 59.003 50.000 0.00 0.00 0.00 2.40
4590 5563 0.996583 TTGCGGGTTTTAGGGGAGAT 59.003 50.000 0.00 0.00 0.00 2.75
4811 5785 2.932614 CTGTGTTCCTTCTGCGATTAGG 59.067 50.000 0.00 0.00 0.00 2.69
4832 5806 3.378427 GTGTGTCATATTTGGCCTTCTCC 59.622 47.826 3.32 0.00 0.00 3.71
5052 6026 6.638096 TTGCAAACATTCTCATCTCAGAAA 57.362 33.333 0.00 0.00 35.99 2.52
5062 6036 8.938906 ACAAATATGGAAATTGCAAACATTCTC 58.061 29.630 1.71 4.34 0.00 2.87
5352 6327 5.997746 AGTTACAATGCAAGTAGACACACAT 59.002 36.000 0.00 0.00 0.00 3.21
5559 6544 3.129813 CACAGGTACACCGCTATTCTACA 59.870 47.826 0.00 0.00 42.08 2.74
5566 6551 0.540133 TCACCACAGGTACACCGCTA 60.540 55.000 0.00 0.00 42.08 4.26
5726 6713 6.719370 TGCTGTTGTAGGTTTGGAGATAAAAT 59.281 34.615 0.00 0.00 0.00 1.82
5889 6911 5.218885 CAAGTTCAGACAACAACAACAACA 58.781 37.500 0.00 0.00 0.00 3.33
5894 6916 4.717233 ATGCAAGTTCAGACAACAACAA 57.283 36.364 0.00 0.00 0.00 2.83
5895 6917 4.881273 AGTATGCAAGTTCAGACAACAACA 59.119 37.500 0.00 0.00 31.09 3.33
5896 6918 5.424121 AGTATGCAAGTTCAGACAACAAC 57.576 39.130 0.00 0.00 31.09 3.32
5897 6919 5.588246 TCAAGTATGCAAGTTCAGACAACAA 59.412 36.000 0.00 0.00 31.09 2.83
5898 6920 5.122519 TCAAGTATGCAAGTTCAGACAACA 58.877 37.500 0.00 0.00 31.09 3.33
5899 6921 5.673337 TCAAGTATGCAAGTTCAGACAAC 57.327 39.130 0.00 0.00 31.09 3.32
5900 6922 6.691754 TTTCAAGTATGCAAGTTCAGACAA 57.308 33.333 0.00 0.00 31.09 3.18
5901 6923 6.882610 ATTTCAAGTATGCAAGTTCAGACA 57.117 33.333 0.00 0.00 31.09 3.41
5902 6924 7.362662 TCAATTTCAAGTATGCAAGTTCAGAC 58.637 34.615 0.00 0.00 0.00 3.51
5903 6925 7.509141 TCAATTTCAAGTATGCAAGTTCAGA 57.491 32.000 0.00 0.00 0.00 3.27
5904 6926 7.864379 AGTTCAATTTCAAGTATGCAAGTTCAG 59.136 33.333 0.00 0.00 0.00 3.02
5905 6927 7.715657 AGTTCAATTTCAAGTATGCAAGTTCA 58.284 30.769 0.00 0.00 0.00 3.18
5906 6928 8.482429 CAAGTTCAATTTCAAGTATGCAAGTTC 58.518 33.333 0.00 0.00 0.00 3.01
5907 6929 7.981225 ACAAGTTCAATTTCAAGTATGCAAGTT 59.019 29.630 0.00 0.00 0.00 2.66
5908 6930 7.491682 ACAAGTTCAATTTCAAGTATGCAAGT 58.508 30.769 0.00 0.00 0.00 3.16
5909 6931 7.935338 ACAAGTTCAATTTCAAGTATGCAAG 57.065 32.000 0.00 0.00 0.00 4.01
5910 6932 7.763528 ACAACAAGTTCAATTTCAAGTATGCAA 59.236 29.630 0.00 0.00 0.00 4.08
5911 6933 7.264221 ACAACAAGTTCAATTTCAAGTATGCA 58.736 30.769 0.00 0.00 0.00 3.96
5912 6934 7.698836 ACAACAAGTTCAATTTCAAGTATGC 57.301 32.000 0.00 0.00 0.00 3.14
5916 6938 9.950680 CAGTATACAACAAGTTCAATTTCAAGT 57.049 29.630 5.50 0.00 0.00 3.16
5917 6939 8.905702 GCAGTATACAACAAGTTCAATTTCAAG 58.094 33.333 5.50 0.00 0.00 3.02
5918 6940 8.409371 TGCAGTATACAACAAGTTCAATTTCAA 58.591 29.630 5.50 0.00 0.00 2.69
5919 6941 7.935520 TGCAGTATACAACAAGTTCAATTTCA 58.064 30.769 5.50 0.00 0.00 2.69
5920 6942 8.076178 ACTGCAGTATACAACAAGTTCAATTTC 58.924 33.333 20.16 0.00 0.00 2.17
5921 6943 7.940850 ACTGCAGTATACAACAAGTTCAATTT 58.059 30.769 20.16 0.00 0.00 1.82
5922 6944 7.510549 ACTGCAGTATACAACAAGTTCAATT 57.489 32.000 20.16 0.00 0.00 2.32
5923 6945 7.510549 AACTGCAGTATACAACAAGTTCAAT 57.489 32.000 22.01 0.00 0.00 2.57
5924 6946 6.935741 AACTGCAGTATACAACAAGTTCAA 57.064 33.333 22.01 0.00 0.00 2.69
5925 6947 6.540551 TCAAACTGCAGTATACAACAAGTTCA 59.459 34.615 22.01 0.00 31.26 3.18
5926 6948 6.851330 GTCAAACTGCAGTATACAACAAGTTC 59.149 38.462 22.01 0.00 31.26 3.01
5927 6949 6.317642 TGTCAAACTGCAGTATACAACAAGTT 59.682 34.615 22.01 3.29 32.84 2.66
5928 6950 5.820423 TGTCAAACTGCAGTATACAACAAGT 59.180 36.000 22.01 0.00 0.00 3.16
5929 6951 6.299023 TGTCAAACTGCAGTATACAACAAG 57.701 37.500 22.01 2.71 0.00 3.16
5959 6981 4.089923 GCAAGTTCAGACAACAACAACAAC 59.910 41.667 0.00 0.00 0.00 3.32
5961 6983 3.254411 TGCAAGTTCAGACAACAACAACA 59.746 39.130 0.00 0.00 0.00 3.33
5970 6992 4.607293 ACTCAGTATGCAAGTTCAGACA 57.393 40.909 0.00 0.00 34.76 3.41
5971 6993 4.377841 GCAACTCAGTATGCAAGTTCAGAC 60.378 45.833 0.00 0.00 42.12 3.51
5972 6994 3.748048 GCAACTCAGTATGCAAGTTCAGA 59.252 43.478 0.00 0.00 42.12 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.