Multiple sequence alignment - TraesCS6A01G240600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G240600 chr6A 100.000 8381 0 0 1 8381 451979412 451987792 0.000000e+00 15477
1 TraesCS6A01G240600 chr6D 96.529 5070 90 22 3351 8357 314507014 314512060 0.000000e+00 8309
2 TraesCS6A01G240600 chr6D 95.522 2032 65 11 348 2361 314501521 314503544 0.000000e+00 3225
3 TraesCS6A01G240600 chr6B 91.962 2650 112 35 5767 8349 512252917 512250302 0.000000e+00 3620
4 TraesCS6A01G240600 chr6B 97.346 1959 34 8 3216 5166 512256507 512254559 0.000000e+00 3314
5 TraesCS6A01G240600 chr6B 95.526 1855 62 14 347 2192 512258935 512257093 0.000000e+00 2946
6 TraesCS6A01G240600 chr6B 97.382 573 11 3 5201 5770 512254561 512253990 0.000000e+00 972
7 TraesCS6A01G240600 chr6B 86.408 206 21 6 8128 8326 512250063 512249858 1.420000e-52 219
8 TraesCS6A01G240600 chr7A 96.632 861 29 0 2353 3213 109351097 109351957 0.000000e+00 1430
9 TraesCS6A01G240600 chr7A 96.181 864 33 0 2351 3214 232384881 232384018 0.000000e+00 1413
10 TraesCS6A01G240600 chr5A 96.420 866 30 1 2353 3217 602838335 602839200 0.000000e+00 1426
11 TraesCS6A01G240600 chr4B 96.420 866 28 2 2353 3217 140709134 140709997 0.000000e+00 1424
12 TraesCS6A01G240600 chr4D 96.408 863 30 1 2353 3215 242938105 242938966 0.000000e+00 1421
13 TraesCS6A01G240600 chr2D 96.400 861 31 0 2353 3213 136425947 136426807 0.000000e+00 1419
14 TraesCS6A01G240600 chr1D 96.400 861 31 0 2353 3213 223523713 223524573 0.000000e+00 1419
15 TraesCS6A01G240600 chr2A 96.078 867 30 2 2353 3218 421218423 421219286 0.000000e+00 1410
16 TraesCS6A01G240600 chr1B 95.867 871 34 2 2353 3221 368546506 368545636 0.000000e+00 1408
17 TraesCS6A01G240600 chrUn 100.000 389 0 0 3649 4037 480151936 480151548 0.000000e+00 719


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G240600 chr6A 451979412 451987792 8380 False 15477.0 15477 100.0000 1 8381 1 chr6A.!!$F1 8380
1 TraesCS6A01G240600 chr6D 314501521 314512060 10539 False 5767.0 8309 96.0255 348 8357 2 chr6D.!!$F1 8009
2 TraesCS6A01G240600 chr6B 512249858 512258935 9077 True 2214.2 3620 93.7248 347 8349 5 chr6B.!!$R1 8002
3 TraesCS6A01G240600 chr7A 109351097 109351957 860 False 1430.0 1430 96.6320 2353 3213 1 chr7A.!!$F1 860
4 TraesCS6A01G240600 chr7A 232384018 232384881 863 True 1413.0 1413 96.1810 2351 3214 1 chr7A.!!$R1 863
5 TraesCS6A01G240600 chr5A 602838335 602839200 865 False 1426.0 1426 96.4200 2353 3217 1 chr5A.!!$F1 864
6 TraesCS6A01G240600 chr4B 140709134 140709997 863 False 1424.0 1424 96.4200 2353 3217 1 chr4B.!!$F1 864
7 TraesCS6A01G240600 chr4D 242938105 242938966 861 False 1421.0 1421 96.4080 2353 3215 1 chr4D.!!$F1 862
8 TraesCS6A01G240600 chr2D 136425947 136426807 860 False 1419.0 1419 96.4000 2353 3213 1 chr2D.!!$F1 860
9 TraesCS6A01G240600 chr1D 223523713 223524573 860 False 1419.0 1419 96.4000 2353 3213 1 chr1D.!!$F1 860
10 TraesCS6A01G240600 chr2A 421218423 421219286 863 False 1410.0 1410 96.0780 2353 3218 1 chr2A.!!$F1 865
11 TraesCS6A01G240600 chr1B 368545636 368546506 870 True 1408.0 1408 95.8670 2353 3221 1 chr1B.!!$R1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.308993 GCTCTCCTGTTGCAACACAC 59.691 55.000 27.96 10.04 34.70 3.82 F
702 705 0.890683 CTGAGAATGGGCCCACAAAC 59.109 55.000 31.51 19.55 0.00 2.93 F
1746 1765 0.456628 TCGTCTTCACAACCACACGA 59.543 50.000 0.00 0.00 34.08 4.35 F
2566 5210 1.494721 TGCCTCAGAAGGACACCTTTT 59.505 47.619 4.51 0.00 44.82 2.27 F
3008 5652 1.825474 GAATGTCAAGAGAGGTCGGGA 59.175 52.381 0.00 0.00 0.00 5.14 F
4771 7423 1.197949 GCGAACAGAAAAGAGCTTCCC 59.802 52.381 0.00 0.00 0.00 3.97 F
5857 9615 1.071314 TTGGTGGGGGAGTGGATGTT 61.071 55.000 0.00 0.00 0.00 2.71 F
6182 9948 2.358737 CAGGTTCCCTGTCCACGC 60.359 66.667 1.99 0.00 45.82 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1759 2.448926 TAATGTCCACTGGTCGTGTG 57.551 50.000 0.00 0.00 42.20 3.82 R
2566 5210 2.694628 GCAGCATTGACCCCAAATATCA 59.305 45.455 0.00 0.00 35.67 2.15 R
2832 5476 0.033405 TCCGGACTCGATCCTTCCTT 60.033 55.000 0.00 0.00 46.69 3.36 R
3425 6069 1.794701 CACGTGGACATGAACACTGAG 59.205 52.381 7.95 8.67 35.51 3.35 R
4980 7632 1.911293 GCTCAACCGCGCTGATGAAA 61.911 55.000 12.47 0.00 0.00 2.69 R
6180 9946 0.652071 ATATGTGCATGTGACGTGCG 59.348 50.000 23.06 0.00 45.37 5.34 R
6723 10497 0.735287 GAAGCGTTACCAGACGTCCC 60.735 60.000 13.01 0.00 44.50 4.46 R
8166 11989 0.319405 CCTTGGCCTTTTGGAAGCTG 59.681 55.000 3.32 0.00 44.07 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.710926 TGGCATGGGGCATTCAAC 58.289 55.556 0.00 0.00 45.76 3.18
18 19 1.988956 TGGCATGGGGCATTCAACC 60.989 57.895 0.00 0.00 45.76 3.77
19 20 2.743566 TGGCATGGGGCATTCAACCA 62.744 55.000 0.00 0.00 45.76 3.67
20 21 2.214235 GCATGGGGCATTCAACCAT 58.786 52.632 0.00 0.00 45.48 3.55
21 22 1.412079 GCATGGGGCATTCAACCATA 58.588 50.000 0.00 0.00 42.85 2.74
22 23 1.972795 GCATGGGGCATTCAACCATAT 59.027 47.619 0.00 0.00 42.85 1.78
23 24 3.164268 GCATGGGGCATTCAACCATATA 58.836 45.455 0.00 0.00 42.85 0.86
24 25 3.056607 GCATGGGGCATTCAACCATATAC 60.057 47.826 0.00 0.00 42.85 1.47
25 26 3.237268 TGGGGCATTCAACCATATACC 57.763 47.619 0.00 0.00 0.00 2.73
26 27 2.515853 TGGGGCATTCAACCATATACCA 59.484 45.455 0.00 0.00 0.00 3.25
27 28 3.141838 TGGGGCATTCAACCATATACCAT 59.858 43.478 0.00 0.00 0.00 3.55
28 29 4.355287 TGGGGCATTCAACCATATACCATA 59.645 41.667 0.00 0.00 0.00 2.74
29 30 4.705023 GGGGCATTCAACCATATACCATAC 59.295 45.833 0.00 0.00 0.00 2.39
30 31 5.321102 GGGCATTCAACCATATACCATACA 58.679 41.667 0.00 0.00 0.00 2.29
31 32 5.183140 GGGCATTCAACCATATACCATACAC 59.817 44.000 0.00 0.00 0.00 2.90
32 33 5.767665 GGCATTCAACCATATACCATACACA 59.232 40.000 0.00 0.00 0.00 3.72
33 34 6.434028 GGCATTCAACCATATACCATACACAT 59.566 38.462 0.00 0.00 0.00 3.21
34 35 7.609918 GGCATTCAACCATATACCATACACATA 59.390 37.037 0.00 0.00 0.00 2.29
35 36 9.177608 GCATTCAACCATATACCATACACATAT 57.822 33.333 0.00 0.00 0.00 1.78
74 75 3.953712 ATGCATTGCCCATGTATGATG 57.046 42.857 6.12 0.00 36.87 3.07
75 76 1.341852 TGCATTGCCCATGTATGATGC 59.658 47.619 6.12 11.96 40.07 3.91
76 77 1.616865 GCATTGCCCATGTATGATGCT 59.383 47.619 11.72 0.00 37.49 3.79
77 78 2.036733 GCATTGCCCATGTATGATGCTT 59.963 45.455 11.72 0.00 37.49 3.91
78 79 3.256383 GCATTGCCCATGTATGATGCTTA 59.744 43.478 11.72 0.00 37.49 3.09
79 80 4.262121 GCATTGCCCATGTATGATGCTTAA 60.262 41.667 11.72 0.00 37.49 1.85
80 81 4.916983 TTGCCCATGTATGATGCTTAAC 57.083 40.909 0.00 0.00 0.00 2.01
81 82 3.895998 TGCCCATGTATGATGCTTAACA 58.104 40.909 0.00 0.00 0.00 2.41
82 83 4.276642 TGCCCATGTATGATGCTTAACAA 58.723 39.130 0.00 0.00 0.00 2.83
83 84 4.708909 TGCCCATGTATGATGCTTAACAAA 59.291 37.500 0.00 0.00 0.00 2.83
84 85 5.186603 TGCCCATGTATGATGCTTAACAAAA 59.813 36.000 0.00 0.00 0.00 2.44
85 86 6.127111 TGCCCATGTATGATGCTTAACAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
86 87 6.762661 GCCCATGTATGATGCTTAACAAAATT 59.237 34.615 0.00 0.00 0.00 1.82
87 88 7.925483 GCCCATGTATGATGCTTAACAAAATTA 59.075 33.333 0.00 0.00 0.00 1.40
88 89 9.467258 CCCATGTATGATGCTTAACAAAATTAG 57.533 33.333 0.00 0.00 0.00 1.73
89 90 9.467258 CCATGTATGATGCTTAACAAAATTAGG 57.533 33.333 0.00 0.00 0.00 2.69
99 100 7.552459 GCTTAACAAAATTAGGATTAAGCCCA 58.448 34.615 6.03 0.00 46.18 5.36
100 101 8.038351 GCTTAACAAAATTAGGATTAAGCCCAA 58.962 33.333 6.03 0.00 46.18 4.12
112 113 8.306313 AGGATTAAGCCCAATAAAGTTTTAGG 57.694 34.615 6.03 0.00 0.00 2.69
113 114 7.899172 AGGATTAAGCCCAATAAAGTTTTAGGT 59.101 33.333 6.03 0.00 0.00 3.08
114 115 8.537016 GGATTAAGCCCAATAAAGTTTTAGGTT 58.463 33.333 0.00 0.00 0.00 3.50
115 116 9.366216 GATTAAGCCCAATAAAGTTTTAGGTTG 57.634 33.333 0.00 0.00 0.00 3.77
116 117 6.987403 AAGCCCAATAAAGTTTTAGGTTGA 57.013 33.333 0.00 0.00 0.00 3.18
117 118 6.590234 AGCCCAATAAAGTTTTAGGTTGAG 57.410 37.500 0.00 0.00 0.00 3.02
118 119 6.075315 AGCCCAATAAAGTTTTAGGTTGAGT 58.925 36.000 0.00 0.00 0.00 3.41
119 120 6.553476 AGCCCAATAAAGTTTTAGGTTGAGTT 59.447 34.615 0.00 0.00 0.00 3.01
120 121 6.645003 GCCCAATAAAGTTTTAGGTTGAGTTG 59.355 38.462 0.00 0.00 0.00 3.16
121 122 7.470841 GCCCAATAAAGTTTTAGGTTGAGTTGA 60.471 37.037 0.00 0.00 0.00 3.18
122 123 8.585018 CCCAATAAAGTTTTAGGTTGAGTTGAT 58.415 33.333 0.00 0.00 0.00 2.57
123 124 9.981114 CCAATAAAGTTTTAGGTTGAGTTGATT 57.019 29.630 0.00 0.00 0.00 2.57
153 154 6.631763 AGAATGATCTGCATATATGACCCA 57.368 37.500 17.10 4.30 35.78 4.51
154 155 7.209340 AGAATGATCTGCATATATGACCCAT 57.791 36.000 17.10 8.36 35.78 4.00
155 156 7.054751 AGAATGATCTGCATATATGACCCATG 58.945 38.462 17.10 0.00 35.78 3.66
156 157 4.520179 TGATCTGCATATATGACCCATGC 58.480 43.478 17.10 2.03 44.23 4.06
166 167 8.659491 GCATATATGACCCATGCATATATAACG 58.341 37.037 17.10 10.67 44.24 3.18
167 168 8.659491 CATATATGACCCATGCATATATAACGC 58.341 37.037 17.14 1.49 44.24 4.84
168 169 4.551702 TGACCCATGCATATATAACGCT 57.448 40.909 0.00 0.00 0.00 5.07
169 170 4.503910 TGACCCATGCATATATAACGCTC 58.496 43.478 0.00 0.22 0.00 5.03
170 171 4.222810 TGACCCATGCATATATAACGCTCT 59.777 41.667 0.00 0.00 0.00 4.09
171 172 4.759782 ACCCATGCATATATAACGCTCTC 58.240 43.478 0.00 0.00 0.00 3.20
172 173 4.122776 CCCATGCATATATAACGCTCTCC 58.877 47.826 0.00 0.00 0.00 3.71
173 174 4.141846 CCCATGCATATATAACGCTCTCCT 60.142 45.833 0.00 0.00 0.00 3.69
174 175 4.807834 CCATGCATATATAACGCTCTCCTG 59.192 45.833 0.00 0.00 0.00 3.86
175 176 5.414360 CATGCATATATAACGCTCTCCTGT 58.586 41.667 0.00 0.00 0.00 4.00
176 177 5.468540 TGCATATATAACGCTCTCCTGTT 57.531 39.130 8.49 0.00 0.00 3.16
177 178 5.230182 TGCATATATAACGCTCTCCTGTTG 58.770 41.667 8.49 0.00 0.00 3.33
178 179 4.092091 GCATATATAACGCTCTCCTGTTGC 59.908 45.833 1.28 0.00 0.00 4.17
179 180 3.819564 ATATAACGCTCTCCTGTTGCA 57.180 42.857 0.00 0.00 0.00 4.08
180 181 2.472695 ATAACGCTCTCCTGTTGCAA 57.527 45.000 0.00 0.00 0.00 4.08
181 182 1.508632 TAACGCTCTCCTGTTGCAAC 58.491 50.000 22.83 22.83 0.00 4.17
182 183 0.463654 AACGCTCTCCTGTTGCAACA 60.464 50.000 29.36 29.36 37.37 3.33
183 184 1.160329 ACGCTCTCCTGTTGCAACAC 61.160 55.000 27.96 15.83 34.70 3.32
184 185 1.159713 CGCTCTCCTGTTGCAACACA 61.160 55.000 27.96 16.07 34.70 3.72
185 186 0.308993 GCTCTCCTGTTGCAACACAC 59.691 55.000 27.96 10.04 34.70 3.82
186 187 1.959042 CTCTCCTGTTGCAACACACT 58.041 50.000 27.96 0.00 34.70 3.55
187 188 1.600957 CTCTCCTGTTGCAACACACTG 59.399 52.381 27.96 17.66 34.70 3.66
188 189 1.209261 TCTCCTGTTGCAACACACTGA 59.791 47.619 27.96 18.87 34.70 3.41
189 190 1.331756 CTCCTGTTGCAACACACTGAC 59.668 52.381 27.96 0.45 34.70 3.51
190 191 1.093972 CCTGTTGCAACACACTGACA 58.906 50.000 27.96 5.77 34.70 3.58
191 192 1.202177 CCTGTTGCAACACACTGACAC 60.202 52.381 27.96 0.00 34.70 3.67
192 193 1.739466 CTGTTGCAACACACTGACACT 59.261 47.619 27.96 0.00 34.70 3.55
193 194 2.158559 TGTTGCAACACACTGACACTT 58.841 42.857 27.96 0.00 33.17 3.16
194 195 3.339141 TGTTGCAACACACTGACACTTA 58.661 40.909 27.96 0.41 33.17 2.24
195 196 3.126171 TGTTGCAACACACTGACACTTAC 59.874 43.478 27.96 0.00 33.17 2.34
196 197 2.285083 TGCAACACACTGACACTTACC 58.715 47.619 0.00 0.00 0.00 2.85
197 198 2.093181 TGCAACACACTGACACTTACCT 60.093 45.455 0.00 0.00 0.00 3.08
198 199 3.133183 TGCAACACACTGACACTTACCTA 59.867 43.478 0.00 0.00 0.00 3.08
199 200 3.741344 GCAACACACTGACACTTACCTAG 59.259 47.826 0.00 0.00 0.00 3.02
200 201 4.739735 GCAACACACTGACACTTACCTAGT 60.740 45.833 0.00 0.00 37.68 2.57
201 202 5.508489 GCAACACACTGACACTTACCTAGTA 60.508 44.000 0.00 0.00 34.56 1.82
202 203 5.702349 ACACACTGACACTTACCTAGTAC 57.298 43.478 0.00 0.00 34.56 2.73
203 204 5.383476 ACACACTGACACTTACCTAGTACT 58.617 41.667 0.00 0.00 34.56 2.73
204 205 6.537355 ACACACTGACACTTACCTAGTACTA 58.463 40.000 1.89 1.89 34.56 1.82
205 206 7.000472 ACACACTGACACTTACCTAGTACTAA 59.000 38.462 3.76 0.00 34.56 2.24
206 207 7.174599 ACACACTGACACTTACCTAGTACTAAG 59.825 40.741 3.76 2.90 34.56 2.18
207 208 6.150809 ACACTGACACTTACCTAGTACTAAGC 59.849 42.308 3.76 0.00 34.56 3.09
208 209 5.651576 ACTGACACTTACCTAGTACTAAGCC 59.348 44.000 3.76 0.00 34.56 4.35
209 210 5.824421 TGACACTTACCTAGTACTAAGCCT 58.176 41.667 3.76 0.00 34.56 4.58
210 211 6.962182 TGACACTTACCTAGTACTAAGCCTA 58.038 40.000 3.76 0.00 34.56 3.93
211 212 7.405292 TGACACTTACCTAGTACTAAGCCTAA 58.595 38.462 3.76 0.00 34.56 2.69
212 213 7.890127 TGACACTTACCTAGTACTAAGCCTAAA 59.110 37.037 3.76 0.00 34.56 1.85
213 214 8.655935 ACACTTACCTAGTACTAAGCCTAAAA 57.344 34.615 3.76 0.00 34.56 1.52
214 215 8.526978 ACACTTACCTAGTACTAAGCCTAAAAC 58.473 37.037 3.76 0.00 34.56 2.43
215 216 8.526147 CACTTACCTAGTACTAAGCCTAAAACA 58.474 37.037 3.76 0.00 34.56 2.83
216 217 9.093458 ACTTACCTAGTACTAAGCCTAAAACAA 57.907 33.333 3.76 0.00 34.56 2.83
217 218 9.363763 CTTACCTAGTACTAAGCCTAAAACAAC 57.636 37.037 3.76 0.00 0.00 3.32
218 219 7.550597 ACCTAGTACTAAGCCTAAAACAACT 57.449 36.000 3.76 0.00 0.00 3.16
219 220 8.655935 ACCTAGTACTAAGCCTAAAACAACTA 57.344 34.615 3.76 0.00 0.00 2.24
220 221 9.264653 ACCTAGTACTAAGCCTAAAACAACTAT 57.735 33.333 3.76 0.00 0.00 2.12
224 225 9.578439 AGTACTAAGCCTAAAACAACTATTACG 57.422 33.333 0.00 0.00 0.00 3.18
225 226 9.573133 GTACTAAGCCTAAAACAACTATTACGA 57.427 33.333 0.00 0.00 0.00 3.43
226 227 8.699283 ACTAAGCCTAAAACAACTATTACGAG 57.301 34.615 0.00 0.00 0.00 4.18
227 228 8.309656 ACTAAGCCTAAAACAACTATTACGAGT 58.690 33.333 0.00 0.00 0.00 4.18
228 229 9.793252 CTAAGCCTAAAACAACTATTACGAGTA 57.207 33.333 0.00 0.00 0.00 2.59
229 230 8.471361 AAGCCTAAAACAACTATTACGAGTAC 57.529 34.615 0.00 0.00 0.00 2.73
230 231 7.605449 AGCCTAAAACAACTATTACGAGTACA 58.395 34.615 0.00 0.00 0.00 2.90
231 232 8.255905 AGCCTAAAACAACTATTACGAGTACAT 58.744 33.333 0.00 0.00 0.00 2.29
232 233 9.520204 GCCTAAAACAACTATTACGAGTACATA 57.480 33.333 0.00 0.00 0.00 2.29
242 243 8.715998 ACTATTACGAGTACATATTAGTCACGG 58.284 37.037 0.00 0.00 0.00 4.94
243 244 6.925610 TTACGAGTACATATTAGTCACGGT 57.074 37.500 0.00 0.00 0.00 4.83
244 245 5.824904 ACGAGTACATATTAGTCACGGTT 57.175 39.130 0.00 0.00 0.00 4.44
245 246 6.925610 ACGAGTACATATTAGTCACGGTTA 57.074 37.500 0.00 0.00 0.00 2.85
246 247 6.719365 ACGAGTACATATTAGTCACGGTTAC 58.281 40.000 0.00 0.00 0.00 2.50
247 248 6.540189 ACGAGTACATATTAGTCACGGTTACT 59.460 38.462 0.14 0.14 0.00 2.24
248 249 7.710907 ACGAGTACATATTAGTCACGGTTACTA 59.289 37.037 0.00 0.00 0.00 1.82
249 250 8.715998 CGAGTACATATTAGTCACGGTTACTAT 58.284 37.037 3.23 0.00 29.86 2.12
253 254 8.361592 ACATATTAGTCACGGTTACTATTTGC 57.638 34.615 3.23 0.00 29.86 3.68
254 255 7.982919 ACATATTAGTCACGGTTACTATTTGCA 59.017 33.333 3.23 0.00 29.86 4.08
255 256 6.657836 ATTAGTCACGGTTACTATTTGCAC 57.342 37.500 3.23 0.00 29.86 4.57
256 257 3.997762 AGTCACGGTTACTATTTGCACA 58.002 40.909 0.00 0.00 0.00 4.57
257 258 4.575885 AGTCACGGTTACTATTTGCACAT 58.424 39.130 0.00 0.00 0.00 3.21
258 259 4.391830 AGTCACGGTTACTATTTGCACATG 59.608 41.667 0.00 0.00 0.00 3.21
259 260 4.153475 GTCACGGTTACTATTTGCACATGT 59.847 41.667 0.00 0.00 0.00 3.21
260 261 4.757657 TCACGGTTACTATTTGCACATGTT 59.242 37.500 0.00 0.00 0.00 2.71
261 262 5.239744 TCACGGTTACTATTTGCACATGTTT 59.760 36.000 0.00 0.00 0.00 2.83
262 263 5.341993 CACGGTTACTATTTGCACATGTTTG 59.658 40.000 0.00 0.00 0.00 2.93
263 264 4.323336 CGGTTACTATTTGCACATGTTTGC 59.677 41.667 0.00 0.00 43.31 3.68
270 271 3.780925 GCACATGTTTGCAGAGTCC 57.219 52.632 0.00 0.00 42.49 3.85
271 272 1.242076 GCACATGTTTGCAGAGTCCT 58.758 50.000 0.00 0.00 42.49 3.85
272 273 2.426522 GCACATGTTTGCAGAGTCCTA 58.573 47.619 0.00 0.00 42.49 2.94
273 274 2.160417 GCACATGTTTGCAGAGTCCTAC 59.840 50.000 0.00 0.00 42.49 3.18
274 275 3.402110 CACATGTTTGCAGAGTCCTACA 58.598 45.455 0.00 0.00 0.00 2.74
275 276 3.814842 CACATGTTTGCAGAGTCCTACAA 59.185 43.478 0.00 0.00 0.00 2.41
276 277 4.456911 CACATGTTTGCAGAGTCCTACAAT 59.543 41.667 0.00 0.00 0.00 2.71
277 278 5.048504 CACATGTTTGCAGAGTCCTACAATT 60.049 40.000 0.00 0.00 0.00 2.32
278 279 5.536161 ACATGTTTGCAGAGTCCTACAATTT 59.464 36.000 0.00 0.00 0.00 1.82
279 280 6.040842 ACATGTTTGCAGAGTCCTACAATTTT 59.959 34.615 0.00 0.00 0.00 1.82
280 281 5.830912 TGTTTGCAGAGTCCTACAATTTTG 58.169 37.500 0.00 0.00 0.00 2.44
281 282 4.503741 TTGCAGAGTCCTACAATTTTGC 57.496 40.909 0.00 0.00 0.00 3.68
282 283 3.754965 TGCAGAGTCCTACAATTTTGCT 58.245 40.909 0.00 0.00 0.00 3.91
283 284 4.144297 TGCAGAGTCCTACAATTTTGCTT 58.856 39.130 0.00 0.00 0.00 3.91
284 285 5.312895 TGCAGAGTCCTACAATTTTGCTTA 58.687 37.500 0.00 0.00 0.00 3.09
285 286 5.181245 TGCAGAGTCCTACAATTTTGCTTAC 59.819 40.000 0.00 0.00 0.00 2.34
286 287 5.412904 GCAGAGTCCTACAATTTTGCTTACT 59.587 40.000 0.00 0.00 0.00 2.24
287 288 6.594159 GCAGAGTCCTACAATTTTGCTTACTA 59.406 38.462 0.00 0.00 0.00 1.82
288 289 7.281100 GCAGAGTCCTACAATTTTGCTTACTAT 59.719 37.037 0.00 0.00 0.00 2.12
289 290 9.167311 CAGAGTCCTACAATTTTGCTTACTATT 57.833 33.333 0.00 0.00 0.00 1.73
290 291 9.740710 AGAGTCCTACAATTTTGCTTACTATTT 57.259 29.630 0.00 0.00 0.00 1.40
302 303 9.567848 TTTTGCTTACTATTTATACTTGCTTGC 57.432 29.630 0.00 0.00 0.00 4.01
303 304 7.857734 TGCTTACTATTTATACTTGCTTGCA 57.142 32.000 0.00 0.00 0.00 4.08
304 305 7.919690 TGCTTACTATTTATACTTGCTTGCAG 58.080 34.615 0.00 0.00 0.00 4.41
305 306 7.012327 TGCTTACTATTTATACTTGCTTGCAGG 59.988 37.037 3.16 3.16 0.00 4.85
306 307 7.520614 GCTTACTATTTATACTTGCTTGCAGGG 60.521 40.741 9.43 3.45 0.00 4.45
307 308 4.580580 ACTATTTATACTTGCTTGCAGGGC 59.419 41.667 9.43 2.17 0.00 5.19
308 309 2.505650 TTATACTTGCTTGCAGGGCA 57.494 45.000 11.52 11.52 37.97 5.36
309 310 2.042686 TATACTTGCTTGCAGGGCAG 57.957 50.000 14.35 11.69 40.61 4.85
310 311 1.318158 ATACTTGCTTGCAGGGCAGC 61.318 55.000 14.35 8.60 40.61 5.25
311 312 4.415332 CTTGCTTGCAGGGCAGCG 62.415 66.667 14.35 8.07 40.61 5.18
315 316 2.670934 CTTGCAGGGCAGCGTCTT 60.671 61.111 0.00 0.00 40.61 3.01
316 317 1.375908 CTTGCAGGGCAGCGTCTTA 60.376 57.895 0.00 0.00 40.61 2.10
317 318 1.639298 CTTGCAGGGCAGCGTCTTAC 61.639 60.000 0.00 0.00 40.61 2.34
318 319 2.047274 GCAGGGCAGCGTCTTACA 60.047 61.111 0.00 0.00 0.00 2.41
319 320 1.671054 GCAGGGCAGCGTCTTACAA 60.671 57.895 0.00 0.00 0.00 2.41
320 321 1.234615 GCAGGGCAGCGTCTTACAAA 61.235 55.000 0.00 0.00 0.00 2.83
321 322 1.453155 CAGGGCAGCGTCTTACAAAT 58.547 50.000 0.00 0.00 0.00 2.32
322 323 1.812571 CAGGGCAGCGTCTTACAAATT 59.187 47.619 0.00 0.00 0.00 1.82
323 324 2.228822 CAGGGCAGCGTCTTACAAATTT 59.771 45.455 0.00 0.00 0.00 1.82
324 325 2.228822 AGGGCAGCGTCTTACAAATTTG 59.771 45.455 16.67 16.67 0.00 2.32
325 326 2.227865 GGGCAGCGTCTTACAAATTTGA 59.772 45.455 24.64 5.76 0.00 2.69
326 327 3.119495 GGGCAGCGTCTTACAAATTTGAT 60.119 43.478 24.64 11.17 0.00 2.57
327 328 4.098416 GGCAGCGTCTTACAAATTTGATC 58.902 43.478 24.64 8.49 0.00 2.92
328 329 4.379394 GGCAGCGTCTTACAAATTTGATCA 60.379 41.667 24.64 6.50 0.00 2.92
329 330 5.335127 GCAGCGTCTTACAAATTTGATCAT 58.665 37.500 24.64 4.75 0.00 2.45
330 331 5.453587 GCAGCGTCTTACAAATTTGATCATC 59.546 40.000 24.64 10.35 0.00 2.92
331 332 6.676456 GCAGCGTCTTACAAATTTGATCATCT 60.676 38.462 24.64 9.14 0.00 2.90
332 333 7.465916 GCAGCGTCTTACAAATTTGATCATCTA 60.466 37.037 24.64 2.62 0.00 1.98
333 334 7.848051 CAGCGTCTTACAAATTTGATCATCTAC 59.152 37.037 24.64 11.10 0.00 2.59
334 335 7.011482 AGCGTCTTACAAATTTGATCATCTACC 59.989 37.037 24.64 5.30 0.00 3.18
335 336 7.630924 CGTCTTACAAATTTGATCATCTACCC 58.369 38.462 24.64 1.57 0.00 3.69
336 337 7.495934 CGTCTTACAAATTTGATCATCTACCCT 59.504 37.037 24.64 0.17 0.00 4.34
337 338 9.178758 GTCTTACAAATTTGATCATCTACCCTT 57.821 33.333 24.64 0.00 0.00 3.95
338 339 9.396022 TCTTACAAATTTGATCATCTACCCTTC 57.604 33.333 24.64 0.00 0.00 3.46
339 340 8.519799 TTACAAATTTGATCATCTACCCTTCC 57.480 34.615 24.64 0.00 0.00 3.46
340 341 6.493166 ACAAATTTGATCATCTACCCTTCCA 58.507 36.000 24.64 0.00 0.00 3.53
341 342 6.378280 ACAAATTTGATCATCTACCCTTCCAC 59.622 38.462 24.64 0.00 0.00 4.02
342 343 5.983333 ATTTGATCATCTACCCTTCCACT 57.017 39.130 0.00 0.00 0.00 4.00
343 344 4.760530 TTGATCATCTACCCTTCCACTG 57.239 45.455 0.00 0.00 0.00 3.66
344 345 3.724478 TGATCATCTACCCTTCCACTGT 58.276 45.455 0.00 0.00 0.00 3.55
345 346 4.878968 TGATCATCTACCCTTCCACTGTA 58.121 43.478 0.00 0.00 0.00 2.74
346 347 4.895889 TGATCATCTACCCTTCCACTGTAG 59.104 45.833 0.00 0.00 34.60 2.74
347 348 4.332683 TCATCTACCCTTCCACTGTAGT 57.667 45.455 0.00 0.00 34.83 2.73
348 349 5.461516 TCATCTACCCTTCCACTGTAGTA 57.538 43.478 0.00 0.00 34.83 1.82
349 350 5.446860 TCATCTACCCTTCCACTGTAGTAG 58.553 45.833 0.00 0.00 34.83 2.57
350 351 3.629087 TCTACCCTTCCACTGTAGTAGC 58.371 50.000 0.00 0.00 34.83 3.58
369 370 1.265365 GCTCAGTGACAAAGAAGGTGC 59.735 52.381 0.00 0.00 0.00 5.01
426 427 5.850557 TCCATTGTTTTTCTTTCTCTGCA 57.149 34.783 0.00 0.00 0.00 4.41
432 433 4.704540 TGTTTTTCTTTCTCTGCAGTGGAA 59.295 37.500 14.67 15.81 0.00 3.53
456 457 5.485353 AGATAGATATGCTCCCAAATTCGGA 59.515 40.000 0.00 0.00 0.00 4.55
458 459 4.137543 AGATATGCTCCCAAATTCGGAAC 58.862 43.478 0.00 0.00 0.00 3.62
528 529 2.219674 CGACTTGCCAAATATCTCGAGC 59.780 50.000 7.81 0.00 0.00 5.03
559 561 3.386237 GACTCACGCCCCTGCTCT 61.386 66.667 0.00 0.00 34.43 4.09
681 684 1.261619 CAAGAAACGTCGCAGCTTTCT 59.738 47.619 2.28 2.28 36.08 2.52
698 701 1.204146 TCTACTGAGAATGGGCCCAC 58.796 55.000 31.51 16.74 0.00 4.61
699 702 0.911769 CTACTGAGAATGGGCCCACA 59.088 55.000 31.51 20.18 0.00 4.17
702 705 0.890683 CTGAGAATGGGCCCACAAAC 59.109 55.000 31.51 19.55 0.00 2.93
738 741 1.547675 GGGACCCTTGCATCAGTGAAA 60.548 52.381 2.09 0.00 0.00 2.69
1599 1615 2.288666 GCGAGCATTGATAAGGACCAA 58.711 47.619 0.00 0.00 0.00 3.67
1650 1666 1.259142 TTATGTTCCGGCTCCGTCCA 61.259 55.000 7.59 1.40 37.81 4.02
1665 1681 2.045536 CCAGAGGTTGAGGCCAGC 60.046 66.667 5.01 0.00 0.00 4.85
1740 1759 3.254892 GAGGAGAATCGTCTTCACAACC 58.745 50.000 3.91 0.00 45.92 3.77
1746 1765 0.456628 TCGTCTTCACAACCACACGA 59.543 50.000 0.00 0.00 34.08 4.35
1866 1885 3.507233 TGGTAAGGCATTTCAGCTGAAAG 59.493 43.478 37.00 29.48 45.87 2.62
1920 1939 3.603532 TGTGGCTTGAAAATTGTTGCAA 58.396 36.364 0.00 0.00 31.07 4.08
2016 2035 5.866633 CGGAGATTGTAGAATTAGAGATGGC 59.133 44.000 0.00 0.00 0.00 4.40
2141 2161 4.861102 ACTGGCAATGAAGGAGAAAAAG 57.139 40.909 0.00 0.00 0.00 2.27
2146 2166 6.048509 TGGCAATGAAGGAGAAAAAGAAAAC 58.951 36.000 0.00 0.00 0.00 2.43
2283 2303 5.768333 GCTTTTTATAGCAAGCAAACAGG 57.232 39.130 11.34 0.00 44.18 4.00
2300 2320 6.515035 GCAAACAGGAGTACTTGTTGCTAAAT 60.515 38.462 12.55 0.00 43.65 1.40
2475 5119 8.099537 GGGTTTAGGCTTAGTAGAACTAAAACT 58.900 37.037 9.51 7.52 39.89 2.66
2487 5131 9.091220 AGTAGAACTAAAACTGAGTACCTGATT 57.909 33.333 0.00 0.00 0.00 2.57
2566 5210 1.494721 TGCCTCAGAAGGACACCTTTT 59.505 47.619 4.51 0.00 44.82 2.27
2676 5320 3.428532 AGCTTCTGGCATTCTTTGTGAT 58.571 40.909 0.00 0.00 44.79 3.06
2695 5339 4.757149 GTGATAAGAGAGTGCCACAAAAGT 59.243 41.667 0.00 0.00 0.00 2.66
2712 5356 7.926018 CCACAAAAGTTAAAAGGCAAGTTCTAT 59.074 33.333 0.00 0.00 0.00 1.98
2719 5363 5.416271 AAAAGGCAAGTTCTATAGGACGA 57.584 39.130 5.49 0.00 0.00 4.20
3008 5652 1.825474 GAATGTCAAGAGAGGTCGGGA 59.175 52.381 0.00 0.00 0.00 5.14
3107 5751 2.594592 GGGTGCGTGGAAGCTTGT 60.595 61.111 2.10 0.00 38.13 3.16
3214 5858 4.025313 GCTTTGTTGTTGTTGTTGTTGTGT 60.025 37.500 0.00 0.00 0.00 3.72
3220 5864 5.644977 TGTTGTTGTTGTTGTGTATGGAA 57.355 34.783 0.00 0.00 0.00 3.53
3329 5973 8.587608 GGAATATGCAATCCTTAATTTGATCCA 58.412 33.333 8.80 0.00 32.75 3.41
3357 6001 4.489679 AGAAATTTCGCAGACTCCAAAC 57.510 40.909 12.42 0.00 34.32 2.93
3359 6003 4.338118 AGAAATTTCGCAGACTCCAAACAA 59.662 37.500 12.42 0.00 34.32 2.83
3425 6069 8.519492 AAGATGTTTGTGTATGTTTACATTGC 57.481 30.769 0.02 0.00 40.35 3.56
4433 7084 4.891168 TCAACTGCTCACGGTAGGATAATA 59.109 41.667 0.00 0.00 32.87 0.98
4488 7139 4.497300 CATGGCACCCTATTCTTTGTTTG 58.503 43.478 0.00 0.00 0.00 2.93
4680 7332 7.992754 ATCACTTGCTTCTTAGTTTTCAGAT 57.007 32.000 0.00 0.00 0.00 2.90
4771 7423 1.197949 GCGAACAGAAAAGAGCTTCCC 59.802 52.381 0.00 0.00 0.00 3.97
5183 7839 4.098349 AGTGCAATTGCCCAACATACATAG 59.902 41.667 26.94 0.00 41.18 2.23
5628 8307 6.468484 GTTTTGGTTAAAAACGGCAGTTAAC 58.532 36.000 1.70 4.07 45.99 2.01
5785 9543 4.403432 CCTATTCACATCCATGCTGGTTTT 59.597 41.667 2.68 0.00 39.03 2.43
5797 9555 4.846779 TGCTGGTTTTGTGGTAGATTTC 57.153 40.909 0.00 0.00 0.00 2.17
5857 9615 1.071314 TTGGTGGGGGAGTGGATGTT 61.071 55.000 0.00 0.00 0.00 2.71
5858 9616 1.071314 TGGTGGGGGAGTGGATGTTT 61.071 55.000 0.00 0.00 0.00 2.83
6077 9843 4.304939 GACATACGGGTCCTTTATGTAGC 58.695 47.826 13.05 2.87 36.73 3.58
6171 9937 5.129650 AGACCTTTCCTAATCTAGCAGGTTC 59.870 44.000 0.00 0.00 32.50 3.62
6182 9948 2.358737 CAGGTTCCCTGTCCACGC 60.359 66.667 1.99 0.00 45.82 5.34
6330 10104 8.578308 TTGTTGTTCTTTGCTCTATTTTGATG 57.422 30.769 0.00 0.00 0.00 3.07
6622 10396 7.039313 ACTTTCTTTCGCTGTTTATTTTCCT 57.961 32.000 0.00 0.00 0.00 3.36
6723 10497 2.666619 GCTCTTTGTTGATGAACTGCGG 60.667 50.000 0.00 0.00 32.79 5.69
6918 10692 3.515602 AATGGTGGGCTAGATGATTCC 57.484 47.619 0.00 0.00 0.00 3.01
7246 11044 7.721399 TGTATGTCTAACTGCTCATCTCTATGA 59.279 37.037 0.00 0.00 39.87 2.15
7253 11052 4.527816 ACTGCTCATCTCTATGATCCTTCC 59.472 45.833 0.00 0.00 41.29 3.46
7275 11074 4.219288 CCAGAGAATGAAAAGGTTGAAGGG 59.781 45.833 0.00 0.00 0.00 3.95
7335 11134 6.319911 CCCCAGAAGAATTGACCTCTTTTATC 59.680 42.308 0.00 0.00 33.24 1.75
7412 11211 9.535878 GGAGTATAAATTGGAGTCTTAGACTTG 57.464 37.037 16.60 0.00 43.53 3.16
7509 11311 9.212641 CATGCCCAAGATGCTGTATATATATAC 57.787 37.037 21.34 21.34 39.14 1.47
7624 11431 6.668645 ACAATGTTGTTATAGGGATTAGGCA 58.331 36.000 0.00 0.00 38.47 4.75
7652 11459 5.858581 GGTGCACATGTAAAAGAACATTCTC 59.141 40.000 20.43 0.00 38.01 2.87
7705 11514 5.355350 CCTCCCAGTGAAAGATTCATGTTAC 59.645 44.000 0.00 0.00 42.47 2.50
7706 11515 5.875224 TCCCAGTGAAAGATTCATGTTACA 58.125 37.500 0.00 0.00 42.47 2.41
7707 11516 6.484288 TCCCAGTGAAAGATTCATGTTACAT 58.516 36.000 0.00 0.00 42.47 2.29
7708 11517 6.947733 TCCCAGTGAAAGATTCATGTTACATT 59.052 34.615 0.00 0.00 42.47 2.71
7709 11518 8.106462 TCCCAGTGAAAGATTCATGTTACATTA 58.894 33.333 0.00 0.00 42.47 1.90
7710 11519 8.906867 CCCAGTGAAAGATTCATGTTACATTAT 58.093 33.333 0.00 0.00 42.47 1.28
7859 11675 4.180057 GAGCAGAATCGTTCACTTCTCAT 58.820 43.478 0.00 0.00 29.34 2.90
7936 11754 7.809806 ACTTTGAAGTGTTTTGTTTCTTCTCTG 59.190 33.333 0.00 0.00 37.98 3.35
8037 11855 1.485895 TCCATGCTGAATCGGTCATGA 59.514 47.619 20.29 0.00 38.77 3.07
8042 11860 2.290260 TGCTGAATCGGTCATGAAACCT 60.290 45.455 0.00 0.00 37.15 3.50
8048 11866 3.040147 TCGGTCATGAAACCTGAAGAC 57.960 47.619 0.00 0.00 37.15 3.01
8153 11975 9.190858 GATAACATGTCAAAACACTTGCATTTA 57.809 29.630 0.00 0.00 38.48 1.40
8166 11989 8.638685 ACACTTGCATTTATTTCATTAGATGC 57.361 30.769 0.00 0.00 39.13 3.91
8223 12046 2.622942 AGCAAACGACCAACATGTCATT 59.377 40.909 0.00 0.00 34.88 2.57
8227 12050 5.221880 CAAACGACCAACATGTCATTCATT 58.778 37.500 0.00 0.00 34.88 2.57
8228 12051 5.452078 AACGACCAACATGTCATTCATTT 57.548 34.783 0.00 0.00 34.88 2.32
8230 12053 5.221880 ACGACCAACATGTCATTCATTTTG 58.778 37.500 0.00 0.00 41.30 2.44
8232 12055 6.016693 ACGACCAACATGTCATTCATTTTGTA 60.017 34.615 0.00 0.00 40.53 2.41
8233 12056 6.305399 CGACCAACATGTCATTCATTTTGTAC 59.695 38.462 0.00 0.00 40.53 2.90
8234 12057 7.288810 ACCAACATGTCATTCATTTTGTACT 57.711 32.000 0.00 0.00 40.53 2.73
8263 12095 3.854666 TCTGCTGCTATTCTCACACTTC 58.145 45.455 0.00 0.00 0.00 3.01
8358 12194 5.373854 AGAGACATTAAGGGGCTTGGATTAT 59.626 40.000 0.00 0.00 0.00 1.28
8362 12198 7.402941 AGACATTAAGGGGCTTGGATTATTTTT 59.597 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.339644 ATGGTTGAATGCCCCATGCC 61.340 55.000 0.00 0.00 37.58 4.40
3 4 3.511146 GGTATATGGTTGAATGCCCCATG 59.489 47.826 2.80 0.00 39.29 3.66
4 5 3.141838 TGGTATATGGTTGAATGCCCCAT 59.858 43.478 0.00 0.00 41.70 4.00
6 7 3.237268 TGGTATATGGTTGAATGCCCC 57.763 47.619 0.00 0.00 0.00 5.80
7 8 5.183140 GTGTATGGTATATGGTTGAATGCCC 59.817 44.000 0.00 0.00 0.00 5.36
9 10 6.875948 TGTGTATGGTATATGGTTGAATGC 57.124 37.500 0.00 0.00 0.00 3.56
46 47 4.846040 ACATGGGCAATGCATGTATTTTT 58.154 34.783 7.79 0.00 40.22 1.94
47 48 4.490899 ACATGGGCAATGCATGTATTTT 57.509 36.364 7.79 0.00 40.22 1.82
48 49 5.304871 TCATACATGGGCAATGCATGTATTT 59.695 36.000 21.27 7.06 45.03 1.40
49 50 4.833938 TCATACATGGGCAATGCATGTATT 59.166 37.500 21.27 2.84 45.03 1.89
50 51 4.409187 TCATACATGGGCAATGCATGTAT 58.591 39.130 19.29 19.29 46.97 2.29
51 52 3.830121 TCATACATGGGCAATGCATGTA 58.170 40.909 17.04 17.04 39.94 2.29
52 53 2.668625 TCATACATGGGCAATGCATGT 58.331 42.857 13.55 14.24 39.94 3.21
53 54 3.584834 CATCATACATGGGCAATGCATG 58.415 45.455 7.79 8.56 40.24 4.06
54 55 2.028476 GCATCATACATGGGCAATGCAT 60.028 45.455 7.79 0.00 40.22 3.96
55 56 1.341852 GCATCATACATGGGCAATGCA 59.658 47.619 7.79 0.00 40.22 3.96
56 57 1.616865 AGCATCATACATGGGCAATGC 59.383 47.619 0.56 14.07 40.22 3.56
57 58 5.221283 TGTTAAGCATCATACATGGGCAATG 60.221 40.000 0.00 0.00 42.48 2.82
58 59 4.894705 TGTTAAGCATCATACATGGGCAAT 59.105 37.500 0.00 0.00 33.14 3.56
59 60 4.276642 TGTTAAGCATCATACATGGGCAA 58.723 39.130 0.00 0.00 33.14 4.52
60 61 3.895998 TGTTAAGCATCATACATGGGCA 58.104 40.909 0.00 0.00 33.14 5.36
61 62 4.916983 TTGTTAAGCATCATACATGGGC 57.083 40.909 0.00 0.00 0.00 5.36
62 63 9.467258 CTAATTTTGTTAAGCATCATACATGGG 57.533 33.333 0.00 0.00 0.00 4.00
63 64 9.467258 CCTAATTTTGTTAAGCATCATACATGG 57.533 33.333 0.00 0.00 0.00 3.66
86 87 9.416284 CCTAAAACTTTATTGGGCTTAATCCTA 57.584 33.333 0.00 0.00 0.00 2.94
87 88 7.899172 ACCTAAAACTTTATTGGGCTTAATCCT 59.101 33.333 0.00 0.00 32.07 3.24
88 89 8.074613 ACCTAAAACTTTATTGGGCTTAATCC 57.925 34.615 0.00 0.00 32.07 3.01
89 90 9.366216 CAACCTAAAACTTTATTGGGCTTAATC 57.634 33.333 0.00 0.00 32.07 1.75
90 91 9.095700 TCAACCTAAAACTTTATTGGGCTTAAT 57.904 29.630 0.00 0.00 32.07 1.40
91 92 8.480133 TCAACCTAAAACTTTATTGGGCTTAA 57.520 30.769 0.00 0.00 32.07 1.85
92 93 7.726738 ACTCAACCTAAAACTTTATTGGGCTTA 59.273 33.333 0.00 0.00 32.07 3.09
93 94 6.553476 ACTCAACCTAAAACTTTATTGGGCTT 59.447 34.615 0.00 0.00 32.07 4.35
94 95 6.075315 ACTCAACCTAAAACTTTATTGGGCT 58.925 36.000 0.00 0.00 32.07 5.19
95 96 6.340962 ACTCAACCTAAAACTTTATTGGGC 57.659 37.500 0.00 0.00 32.07 5.36
96 97 7.947282 TCAACTCAACCTAAAACTTTATTGGG 58.053 34.615 0.00 0.00 34.81 4.12
97 98 9.981114 AATCAACTCAACCTAAAACTTTATTGG 57.019 29.630 0.00 0.00 0.00 3.16
127 128 9.438163 TGGGTCATATATGCAGATCATTCTATA 57.562 33.333 7.92 0.00 36.63 1.31
128 129 8.328055 TGGGTCATATATGCAGATCATTCTAT 57.672 34.615 7.92 0.00 36.63 1.98
129 130 7.738437 TGGGTCATATATGCAGATCATTCTA 57.262 36.000 7.92 0.00 36.63 2.10
130 131 6.631763 TGGGTCATATATGCAGATCATTCT 57.368 37.500 7.92 0.00 36.63 2.40
131 132 6.238676 GCATGGGTCATATATGCAGATCATTC 60.239 42.308 7.92 0.00 44.88 2.67
132 133 5.593095 GCATGGGTCATATATGCAGATCATT 59.407 40.000 7.92 0.00 44.88 2.57
133 134 5.131067 GCATGGGTCATATATGCAGATCAT 58.869 41.667 7.92 4.87 44.88 2.45
134 135 4.520179 GCATGGGTCATATATGCAGATCA 58.480 43.478 7.92 2.89 44.88 2.92
140 141 8.659491 CGTTATATATGCATGGGTCATATATGC 58.341 37.037 22.13 16.76 43.98 3.14
141 142 8.659491 GCGTTATATATGCATGGGTCATATATG 58.341 37.037 22.13 6.36 43.98 1.78
142 143 8.597167 AGCGTTATATATGCATGGGTCATATAT 58.403 33.333 19.56 19.56 45.14 0.86
143 144 7.962441 AGCGTTATATATGCATGGGTCATATA 58.038 34.615 10.16 5.79 41.13 0.86
144 145 6.830912 AGCGTTATATATGCATGGGTCATAT 58.169 36.000 10.16 6.79 41.44 1.78
145 146 6.098266 AGAGCGTTATATATGCATGGGTCATA 59.902 38.462 10.16 0.00 41.44 2.15
146 147 5.102953 AGCGTTATATATGCATGGGTCAT 57.897 39.130 10.16 0.00 41.44 3.06
147 148 4.222810 AGAGCGTTATATATGCATGGGTCA 59.777 41.667 10.16 0.00 41.44 4.02
148 149 4.759782 AGAGCGTTATATATGCATGGGTC 58.240 43.478 10.16 4.97 41.44 4.46
149 150 4.383118 GGAGAGCGTTATATATGCATGGGT 60.383 45.833 10.16 0.00 41.44 4.51
150 151 4.122776 GGAGAGCGTTATATATGCATGGG 58.877 47.826 10.16 0.00 41.44 4.00
151 152 4.807834 CAGGAGAGCGTTATATATGCATGG 59.192 45.833 10.16 0.00 41.44 3.66
152 153 5.414360 ACAGGAGAGCGTTATATATGCATG 58.586 41.667 10.16 0.00 41.44 4.06
153 154 5.667539 ACAGGAGAGCGTTATATATGCAT 57.332 39.130 3.79 3.79 41.44 3.96
154 155 5.230182 CAACAGGAGAGCGTTATATATGCA 58.770 41.667 9.40 0.00 41.44 3.96
155 156 4.092091 GCAACAGGAGAGCGTTATATATGC 59.908 45.833 0.00 0.40 39.16 3.14
156 157 5.230182 TGCAACAGGAGAGCGTTATATATG 58.770 41.667 0.00 0.00 0.00 1.78
157 158 5.468540 TGCAACAGGAGAGCGTTATATAT 57.531 39.130 0.00 0.00 0.00 0.86
158 159 4.929819 TGCAACAGGAGAGCGTTATATA 57.070 40.909 0.00 0.00 0.00 0.86
159 160 3.819564 TGCAACAGGAGAGCGTTATAT 57.180 42.857 0.00 0.00 0.00 0.86
160 161 3.259064 GTTGCAACAGGAGAGCGTTATA 58.741 45.455 24.52 0.00 0.00 0.98
161 162 2.076863 GTTGCAACAGGAGAGCGTTAT 58.923 47.619 24.52 0.00 0.00 1.89
162 163 1.202592 TGTTGCAACAGGAGAGCGTTA 60.203 47.619 27.96 0.63 34.30 3.18
163 164 0.463654 TGTTGCAACAGGAGAGCGTT 60.464 50.000 27.96 0.00 34.30 4.84
164 165 1.146041 TGTTGCAACAGGAGAGCGT 59.854 52.632 27.96 0.00 34.30 5.07
165 166 1.159713 TGTGTTGCAACAGGAGAGCG 61.160 55.000 31.81 0.00 40.05 5.03
166 167 0.308993 GTGTGTTGCAACAGGAGAGC 59.691 55.000 31.81 19.00 40.05 4.09
167 168 1.600957 CAGTGTGTTGCAACAGGAGAG 59.399 52.381 31.81 16.76 40.05 3.20
168 169 1.209261 TCAGTGTGTTGCAACAGGAGA 59.791 47.619 31.81 22.39 40.05 3.71
169 170 1.331756 GTCAGTGTGTTGCAACAGGAG 59.668 52.381 31.81 20.64 40.05 3.69
170 171 1.339535 TGTCAGTGTGTTGCAACAGGA 60.340 47.619 31.81 22.14 40.05 3.86
171 172 1.093972 TGTCAGTGTGTTGCAACAGG 58.906 50.000 31.81 20.38 40.05 4.00
172 173 1.739466 AGTGTCAGTGTGTTGCAACAG 59.261 47.619 31.81 19.88 40.05 3.16
173 174 1.819928 AGTGTCAGTGTGTTGCAACA 58.180 45.000 27.96 27.96 36.38 3.33
174 175 2.919666 AAGTGTCAGTGTGTTGCAAC 57.080 45.000 22.83 22.83 0.00 4.17
175 176 2.680841 GGTAAGTGTCAGTGTGTTGCAA 59.319 45.455 0.00 0.00 0.00 4.08
176 177 2.093181 AGGTAAGTGTCAGTGTGTTGCA 60.093 45.455 0.00 0.00 0.00 4.08
177 178 2.561569 AGGTAAGTGTCAGTGTGTTGC 58.438 47.619 0.00 0.00 0.00 4.17
178 179 4.945246 ACTAGGTAAGTGTCAGTGTGTTG 58.055 43.478 0.00 0.00 36.93 3.33
179 180 5.832060 AGTACTAGGTAAGTGTCAGTGTGTT 59.168 40.000 0.00 0.00 39.39 3.32
180 181 5.383476 AGTACTAGGTAAGTGTCAGTGTGT 58.617 41.667 0.00 0.00 39.39 3.72
181 182 5.961396 AGTACTAGGTAAGTGTCAGTGTG 57.039 43.478 0.00 0.00 39.39 3.82
182 183 6.150809 GCTTAGTACTAGGTAAGTGTCAGTGT 59.849 42.308 13.04 0.00 39.39 3.55
183 184 6.404513 GGCTTAGTACTAGGTAAGTGTCAGTG 60.405 46.154 13.04 0.00 39.39 3.66
184 185 5.651576 GGCTTAGTACTAGGTAAGTGTCAGT 59.348 44.000 13.04 0.00 39.39 3.41
185 186 5.887035 AGGCTTAGTACTAGGTAAGTGTCAG 59.113 44.000 13.04 0.99 39.39 3.51
186 187 5.824421 AGGCTTAGTACTAGGTAAGTGTCA 58.176 41.667 13.04 0.00 39.39 3.58
187 188 7.872113 TTAGGCTTAGTACTAGGTAAGTGTC 57.128 40.000 13.04 1.17 39.39 3.67
188 189 8.526978 GTTTTAGGCTTAGTACTAGGTAAGTGT 58.473 37.037 13.04 0.72 39.39 3.55
189 190 8.526147 TGTTTTAGGCTTAGTACTAGGTAAGTG 58.474 37.037 13.04 0.00 39.39 3.16
190 191 8.655935 TGTTTTAGGCTTAGTACTAGGTAAGT 57.344 34.615 13.04 0.00 42.62 2.24
191 192 9.363763 GTTGTTTTAGGCTTAGTACTAGGTAAG 57.636 37.037 13.04 6.35 0.00 2.34
192 193 9.093458 AGTTGTTTTAGGCTTAGTACTAGGTAA 57.907 33.333 13.04 3.10 0.00 2.85
193 194 8.655935 AGTTGTTTTAGGCTTAGTACTAGGTA 57.344 34.615 13.04 0.00 0.00 3.08
194 195 7.550597 AGTTGTTTTAGGCTTAGTACTAGGT 57.449 36.000 13.04 0.00 0.00 3.08
198 199 9.578439 CGTAATAGTTGTTTTAGGCTTAGTACT 57.422 33.333 0.00 0.00 0.00 2.73
199 200 9.573133 TCGTAATAGTTGTTTTAGGCTTAGTAC 57.427 33.333 0.00 0.00 0.00 2.73
200 201 9.793252 CTCGTAATAGTTGTTTTAGGCTTAGTA 57.207 33.333 0.00 0.00 0.00 1.82
201 202 8.309656 ACTCGTAATAGTTGTTTTAGGCTTAGT 58.690 33.333 0.00 0.00 0.00 2.24
202 203 8.699283 ACTCGTAATAGTTGTTTTAGGCTTAG 57.301 34.615 0.00 0.00 0.00 2.18
203 204 9.573133 GTACTCGTAATAGTTGTTTTAGGCTTA 57.427 33.333 0.00 0.00 0.00 3.09
204 205 8.090214 TGTACTCGTAATAGTTGTTTTAGGCTT 58.910 33.333 0.00 0.00 0.00 4.35
205 206 7.605449 TGTACTCGTAATAGTTGTTTTAGGCT 58.395 34.615 0.00 0.00 0.00 4.58
206 207 7.816945 TGTACTCGTAATAGTTGTTTTAGGC 57.183 36.000 0.00 0.00 0.00 3.93
216 217 8.715998 CCGTGACTAATATGTACTCGTAATAGT 58.284 37.037 0.00 0.00 35.62 2.12
217 218 8.715998 ACCGTGACTAATATGTACTCGTAATAG 58.284 37.037 0.00 0.00 0.00 1.73
218 219 8.607441 ACCGTGACTAATATGTACTCGTAATA 57.393 34.615 0.00 0.00 0.00 0.98
219 220 7.502120 ACCGTGACTAATATGTACTCGTAAT 57.498 36.000 0.00 0.00 0.00 1.89
220 221 6.925610 ACCGTGACTAATATGTACTCGTAA 57.074 37.500 0.00 0.00 0.00 3.18
221 222 6.925610 AACCGTGACTAATATGTACTCGTA 57.074 37.500 0.00 0.00 0.00 3.43
222 223 5.824904 AACCGTGACTAATATGTACTCGT 57.175 39.130 0.00 0.00 0.00 4.18
223 224 6.952743 AGTAACCGTGACTAATATGTACTCG 58.047 40.000 0.00 0.00 0.00 4.18
227 228 9.467258 GCAAATAGTAACCGTGACTAATATGTA 57.533 33.333 0.00 0.00 33.24 2.29
228 229 7.982919 TGCAAATAGTAACCGTGACTAATATGT 59.017 33.333 0.00 0.00 33.24 2.29
229 230 8.273557 GTGCAAATAGTAACCGTGACTAATATG 58.726 37.037 0.00 1.88 33.24 1.78
230 231 7.982919 TGTGCAAATAGTAACCGTGACTAATAT 59.017 33.333 0.00 0.00 33.24 1.28
231 232 7.321908 TGTGCAAATAGTAACCGTGACTAATA 58.678 34.615 0.00 0.00 33.24 0.98
232 233 6.167685 TGTGCAAATAGTAACCGTGACTAAT 58.832 36.000 0.00 0.00 33.24 1.73
233 234 5.539979 TGTGCAAATAGTAACCGTGACTAA 58.460 37.500 0.00 0.00 33.24 2.24
234 235 5.136816 TGTGCAAATAGTAACCGTGACTA 57.863 39.130 0.00 0.00 34.01 2.59
235 236 3.997762 TGTGCAAATAGTAACCGTGACT 58.002 40.909 0.00 0.00 0.00 3.41
236 237 4.153475 ACATGTGCAAATAGTAACCGTGAC 59.847 41.667 0.00 0.00 0.00 3.67
237 238 4.320023 ACATGTGCAAATAGTAACCGTGA 58.680 39.130 0.00 0.00 0.00 4.35
238 239 4.678509 ACATGTGCAAATAGTAACCGTG 57.321 40.909 0.00 0.00 0.00 4.94
239 240 5.457140 CAAACATGTGCAAATAGTAACCGT 58.543 37.500 0.00 0.00 0.00 4.83
240 241 4.323336 GCAAACATGTGCAAATAGTAACCG 59.677 41.667 0.00 0.00 44.29 4.44
241 242 5.761818 GCAAACATGTGCAAATAGTAACC 57.238 39.130 0.00 0.00 44.29 2.85
252 253 1.242076 AGGACTCTGCAAACATGTGC 58.758 50.000 0.00 0.00 45.15 4.57
253 254 3.402110 TGTAGGACTCTGCAAACATGTG 58.598 45.455 0.00 0.00 32.73 3.21
254 255 3.769739 TGTAGGACTCTGCAAACATGT 57.230 42.857 0.00 0.00 32.73 3.21
255 256 5.633830 AATTGTAGGACTCTGCAAACATG 57.366 39.130 1.49 0.00 45.90 3.21
256 257 6.449698 CAAAATTGTAGGACTCTGCAAACAT 58.550 36.000 1.49 0.00 45.90 2.71
257 258 5.735922 GCAAAATTGTAGGACTCTGCAAACA 60.736 40.000 1.49 0.00 45.90 2.83
258 259 4.681483 GCAAAATTGTAGGACTCTGCAAAC 59.319 41.667 1.49 0.00 45.90 2.93
259 260 4.584325 AGCAAAATTGTAGGACTCTGCAAA 59.416 37.500 1.49 0.00 45.90 3.68
260 261 4.144297 AGCAAAATTGTAGGACTCTGCAA 58.856 39.130 0.00 0.00 46.59 4.08
261 262 3.754965 AGCAAAATTGTAGGACTCTGCA 58.245 40.909 0.00 0.00 33.82 4.41
262 263 4.773323 AAGCAAAATTGTAGGACTCTGC 57.227 40.909 0.00 0.00 0.00 4.26
263 264 8.723942 ATAGTAAGCAAAATTGTAGGACTCTG 57.276 34.615 0.00 0.00 0.00 3.35
264 265 9.740710 AAATAGTAAGCAAAATTGTAGGACTCT 57.259 29.630 0.00 0.00 0.00 3.24
276 277 9.567848 GCAAGCAAGTATAAATAGTAAGCAAAA 57.432 29.630 0.00 0.00 0.00 2.44
277 278 8.735315 TGCAAGCAAGTATAAATAGTAAGCAAA 58.265 29.630 0.00 0.00 0.00 3.68
278 279 8.275015 TGCAAGCAAGTATAAATAGTAAGCAA 57.725 30.769 0.00 0.00 0.00 3.91
279 280 7.012327 CCTGCAAGCAAGTATAAATAGTAAGCA 59.988 37.037 0.00 0.00 0.00 3.91
280 281 7.355778 CCTGCAAGCAAGTATAAATAGTAAGC 58.644 38.462 0.00 0.00 0.00 3.09
281 282 7.520614 GCCCTGCAAGCAAGTATAAATAGTAAG 60.521 40.741 3.57 0.00 0.00 2.34
282 283 6.262273 GCCCTGCAAGCAAGTATAAATAGTAA 59.738 38.462 3.57 0.00 0.00 2.24
283 284 5.763204 GCCCTGCAAGCAAGTATAAATAGTA 59.237 40.000 3.57 0.00 0.00 1.82
284 285 4.580580 GCCCTGCAAGCAAGTATAAATAGT 59.419 41.667 3.57 0.00 0.00 2.12
285 286 4.580167 TGCCCTGCAAGCAAGTATAAATAG 59.420 41.667 8.55 0.00 37.28 1.73
286 287 4.531854 TGCCCTGCAAGCAAGTATAAATA 58.468 39.130 8.55 0.00 37.28 1.40
287 288 3.364549 TGCCCTGCAAGCAAGTATAAAT 58.635 40.909 8.55 0.00 37.28 1.40
288 289 2.754552 CTGCCCTGCAAGCAAGTATAAA 59.245 45.455 11.81 0.00 40.35 1.40
289 290 2.368439 CTGCCCTGCAAGCAAGTATAA 58.632 47.619 11.81 0.00 40.35 0.98
290 291 2.018644 GCTGCCCTGCAAGCAAGTATA 61.019 52.381 11.81 0.00 40.35 1.47
291 292 1.318158 GCTGCCCTGCAAGCAAGTAT 61.318 55.000 11.81 0.00 40.35 2.12
292 293 1.973281 GCTGCCCTGCAAGCAAGTA 60.973 57.895 11.81 0.00 40.35 2.24
293 294 3.300765 GCTGCCCTGCAAGCAAGT 61.301 61.111 11.81 0.00 40.35 3.16
294 295 4.415332 CGCTGCCCTGCAAGCAAG 62.415 66.667 11.81 5.98 40.35 4.01
298 299 1.375908 TAAGACGCTGCCCTGCAAG 60.376 57.895 0.00 0.00 38.41 4.01
299 300 1.671054 GTAAGACGCTGCCCTGCAA 60.671 57.895 0.00 0.00 38.41 4.08
300 301 2.047274 GTAAGACGCTGCCCTGCA 60.047 61.111 0.00 0.00 36.92 4.41
301 302 1.234615 TTTGTAAGACGCTGCCCTGC 61.235 55.000 0.00 0.00 0.00 4.85
302 303 1.453155 ATTTGTAAGACGCTGCCCTG 58.547 50.000 0.00 0.00 0.00 4.45
303 304 2.200373 AATTTGTAAGACGCTGCCCT 57.800 45.000 0.00 0.00 0.00 5.19
304 305 2.227865 TCAAATTTGTAAGACGCTGCCC 59.772 45.455 17.47 0.00 0.00 5.36
305 306 3.552604 TCAAATTTGTAAGACGCTGCC 57.447 42.857 17.47 0.00 0.00 4.85
306 307 4.722194 TGATCAAATTTGTAAGACGCTGC 58.278 39.130 17.47 0.00 0.00 5.25
307 308 6.779117 AGATGATCAAATTTGTAAGACGCTG 58.221 36.000 17.47 0.00 0.00 5.18
308 309 6.992063 AGATGATCAAATTTGTAAGACGCT 57.008 33.333 17.47 5.71 0.00 5.07
309 310 7.126398 GGTAGATGATCAAATTTGTAAGACGC 58.874 38.462 17.47 3.72 0.00 5.19
310 311 7.495934 AGGGTAGATGATCAAATTTGTAAGACG 59.504 37.037 17.47 0.00 0.00 4.18
311 312 8.738645 AGGGTAGATGATCAAATTTGTAAGAC 57.261 34.615 17.47 8.28 0.00 3.01
312 313 9.396022 GAAGGGTAGATGATCAAATTTGTAAGA 57.604 33.333 17.47 0.00 0.00 2.10
313 314 8.624776 GGAAGGGTAGATGATCAAATTTGTAAG 58.375 37.037 17.47 0.00 0.00 2.34
314 315 8.112822 TGGAAGGGTAGATGATCAAATTTGTAA 58.887 33.333 17.47 5.52 0.00 2.41
315 316 7.556275 GTGGAAGGGTAGATGATCAAATTTGTA 59.444 37.037 17.47 5.54 0.00 2.41
316 317 6.378280 GTGGAAGGGTAGATGATCAAATTTGT 59.622 38.462 17.47 5.61 0.00 2.83
317 318 6.604795 AGTGGAAGGGTAGATGATCAAATTTG 59.395 38.462 12.15 12.15 0.00 2.32
318 319 6.604795 CAGTGGAAGGGTAGATGATCAAATTT 59.395 38.462 0.00 0.00 0.00 1.82
319 320 6.125029 CAGTGGAAGGGTAGATGATCAAATT 58.875 40.000 0.00 0.00 0.00 1.82
320 321 5.192522 ACAGTGGAAGGGTAGATGATCAAAT 59.807 40.000 0.00 0.00 0.00 2.32
321 322 4.536090 ACAGTGGAAGGGTAGATGATCAAA 59.464 41.667 0.00 0.00 0.00 2.69
322 323 4.104086 ACAGTGGAAGGGTAGATGATCAA 58.896 43.478 0.00 0.00 0.00 2.57
323 324 3.724478 ACAGTGGAAGGGTAGATGATCA 58.276 45.455 0.00 0.00 0.00 2.92
324 325 4.896482 ACTACAGTGGAAGGGTAGATGATC 59.104 45.833 0.00 0.00 38.26 2.92
325 326 4.884961 ACTACAGTGGAAGGGTAGATGAT 58.115 43.478 0.00 0.00 38.26 2.45
326 327 4.332683 ACTACAGTGGAAGGGTAGATGA 57.667 45.455 0.00 0.00 38.26 2.92
327 328 4.038162 GCTACTACAGTGGAAGGGTAGATG 59.962 50.000 4.77 0.00 38.26 2.90
328 329 4.079096 AGCTACTACAGTGGAAGGGTAGAT 60.079 45.833 4.77 0.00 38.26 1.98
329 330 3.268856 AGCTACTACAGTGGAAGGGTAGA 59.731 47.826 4.77 0.00 38.26 2.59
330 331 3.633065 GAGCTACTACAGTGGAAGGGTAG 59.367 52.174 0.00 0.00 40.19 3.18
331 332 3.010920 TGAGCTACTACAGTGGAAGGGTA 59.989 47.826 0.00 0.00 0.00 3.69
332 333 2.225293 TGAGCTACTACAGTGGAAGGGT 60.225 50.000 0.00 0.00 0.00 4.34
333 334 2.428890 CTGAGCTACTACAGTGGAAGGG 59.571 54.545 0.00 0.00 0.00 3.95
334 335 3.093057 ACTGAGCTACTACAGTGGAAGG 58.907 50.000 5.07 0.00 44.18 3.46
340 341 4.827835 TCTTTGTCACTGAGCTACTACAGT 59.172 41.667 0.10 0.10 46.32 3.55
341 342 5.378292 TCTTTGTCACTGAGCTACTACAG 57.622 43.478 0.00 0.00 39.65 2.74
342 343 5.279006 CCTTCTTTGTCACTGAGCTACTACA 60.279 44.000 0.00 0.00 0.00 2.74
343 344 5.164954 CCTTCTTTGTCACTGAGCTACTAC 58.835 45.833 0.00 0.00 0.00 2.73
344 345 4.833380 ACCTTCTTTGTCACTGAGCTACTA 59.167 41.667 0.00 0.00 0.00 1.82
345 346 3.643792 ACCTTCTTTGTCACTGAGCTACT 59.356 43.478 0.00 0.00 0.00 2.57
346 347 3.743396 CACCTTCTTTGTCACTGAGCTAC 59.257 47.826 0.00 0.00 0.00 3.58
347 348 3.803715 GCACCTTCTTTGTCACTGAGCTA 60.804 47.826 0.00 0.00 0.00 3.32
348 349 2.843701 CACCTTCTTTGTCACTGAGCT 58.156 47.619 0.00 0.00 0.00 4.09
349 350 1.265365 GCACCTTCTTTGTCACTGAGC 59.735 52.381 0.00 0.00 0.00 4.26
350 351 2.289002 GTGCACCTTCTTTGTCACTGAG 59.711 50.000 5.22 0.00 0.00 3.35
369 370 4.035017 GTGTGGATTTCTGAACAAACGTG 58.965 43.478 0.00 0.00 0.00 4.49
426 427 4.756564 TGGGAGCATATCTATCTTCCACT 58.243 43.478 0.00 0.00 30.75 4.00
432 433 5.485353 TCCGAATTTGGGAGCATATCTATCT 59.515 40.000 12.04 0.00 0.00 1.98
456 457 2.800544 CCACAGAAACGATGAACGAGTT 59.199 45.455 0.00 0.00 45.77 3.01
458 459 2.408704 GTCCACAGAAACGATGAACGAG 59.591 50.000 0.00 0.00 45.77 4.18
528 529 1.185618 TGAGTCAGAAGGTGGGGTCG 61.186 60.000 0.00 0.00 0.00 4.79
559 561 0.598562 GAGCTCCTCGTTGTCAGTGA 59.401 55.000 0.87 0.00 0.00 3.41
681 684 1.367346 TTGTGGGCCCATTCTCAGTA 58.633 50.000 31.45 3.83 0.00 2.74
782 785 1.451387 CGCCGGGCTGTTAAATCCT 60.451 57.895 18.34 0.00 0.00 3.24
905 920 4.191015 GGAATCGGTGGGGAGGGC 62.191 72.222 0.00 0.00 0.00 5.19
1287 1303 4.530857 GTGCCCGCGCTATCACCT 62.531 66.667 5.56 0.00 35.36 4.00
1339 1355 3.379445 GGACGAAGAGGGCGGTGA 61.379 66.667 0.00 0.00 0.00 4.02
1340 1356 3.234630 TTGGACGAAGAGGGCGGTG 62.235 63.158 0.00 0.00 0.00 4.94
1341 1357 2.920912 TTGGACGAAGAGGGCGGT 60.921 61.111 0.00 0.00 0.00 5.68
1599 1615 3.662759 TCCACCTCAACCTTTTTCACT 57.337 42.857 0.00 0.00 0.00 3.41
1650 1666 2.925170 ACGCTGGCCTCAACCTCT 60.925 61.111 3.32 0.00 0.00 3.69
1740 1759 2.448926 TAATGTCCACTGGTCGTGTG 57.551 50.000 0.00 0.00 42.20 3.82
1746 1765 3.248024 TGGAGTCTTAATGTCCACTGGT 58.752 45.455 0.00 0.00 35.36 4.00
1866 1885 5.922544 ACGTGTAAGGTGTAACACAGATAAC 59.077 40.000 6.43 0.00 44.98 1.89
1920 1939 5.242393 CACTAATGGCCTAAAATGCTATGCT 59.758 40.000 3.32 0.00 29.70 3.79
1921 1940 5.241506 TCACTAATGGCCTAAAATGCTATGC 59.758 40.000 3.32 0.00 29.70 3.14
1922 1941 6.262944 TGTCACTAATGGCCTAAAATGCTATG 59.737 38.462 3.32 0.00 29.70 2.23
2097 2117 8.232513 CAGTACGTCACATCTAACTAGTTAACA 58.767 37.037 15.95 6.60 0.00 2.41
2146 2166 7.648142 AGTATTGACACATAACAAAACACTGG 58.352 34.615 0.00 0.00 0.00 4.00
2283 2303 9.946165 ACTAACAAAATTTAGCAACAAGTACTC 57.054 29.630 0.00 0.00 33.02 2.59
2475 5119 2.851263 AACCGCAAATCAGGTACTCA 57.149 45.000 0.00 0.00 40.37 3.41
2487 5131 3.828451 ACCTAGTAGTACTGAAACCGCAA 59.172 43.478 13.29 0.00 0.00 4.85
2566 5210 2.694628 GCAGCATTGACCCCAAATATCA 59.305 45.455 0.00 0.00 35.67 2.15
2676 5320 7.201785 CCTTTTAACTTTTGTGGCACTCTCTTA 60.202 37.037 19.83 5.39 0.00 2.10
2695 5339 6.815142 GTCGTCCTATAGAACTTGCCTTTTAA 59.185 38.462 0.00 0.00 0.00 1.52
2832 5476 0.033405 TCCGGACTCGATCCTTCCTT 60.033 55.000 0.00 0.00 46.69 3.36
2983 5627 2.494073 GACCTCTCTTGACATTCTCCGT 59.506 50.000 0.00 0.00 0.00 4.69
3008 5652 4.444876 CCTCCCATGTCAAATTCGGTCTAT 60.445 45.833 0.00 0.00 0.00 1.98
3107 5751 0.918258 TGGCTCTGGCACATGGATAA 59.082 50.000 0.00 0.00 38.20 1.75
3214 5858 5.715439 AGAAATCCATCACCAGTTCCATA 57.285 39.130 0.00 0.00 0.00 2.74
3220 5864 4.371624 TGTGAAGAAATCCATCACCAGT 57.628 40.909 11.96 0.00 42.12 4.00
3271 5915 8.951614 AGGCTAGGTACATAAGTTCACATATA 57.048 34.615 0.00 0.00 0.00 0.86
3329 5973 6.206634 TGGAGTCTGCGAAATTTCTATTTTGT 59.793 34.615 15.92 0.00 37.43 2.83
3357 6001 1.729517 TCAACACGCATCGGTACATTG 59.270 47.619 0.00 0.00 0.00 2.82
3359 6003 2.309528 ATCAACACGCATCGGTACAT 57.690 45.000 0.00 0.00 0.00 2.29
3423 6067 1.873486 CGTGGACATGAACACTGAGCA 60.873 52.381 17.68 0.00 35.51 4.26
3425 6069 1.794701 CACGTGGACATGAACACTGAG 59.205 52.381 7.95 8.67 35.51 3.35
3577 6228 9.185680 GACTGGGGTAGAAAAATATAAACACAT 57.814 33.333 0.00 0.00 0.00 3.21
3583 6234 8.801882 CAGTTGACTGGGGTAGAAAAATATAA 57.198 34.615 3.19 0.00 40.20 0.98
3650 6301 8.800370 TGATTGCTGGTAATACACAAGAAATA 57.200 30.769 0.00 0.00 36.65 1.40
3651 6302 7.701539 TGATTGCTGGTAATACACAAGAAAT 57.298 32.000 0.00 0.00 38.97 2.17
3652 6303 7.013750 TGTTGATTGCTGGTAATACACAAGAAA 59.986 33.333 0.00 0.00 29.54 2.52
4450 7101 4.518970 GTGCCATGGAAGTAAAGACTGAAA 59.481 41.667 18.40 0.00 35.52 2.69
4680 7332 4.516321 CCTGTCATGAAAATGTCTGTCACA 59.484 41.667 0.00 0.00 40.18 3.58
4771 7423 5.988561 GCTGAGATCTACATCTTTACCAAGG 59.011 44.000 0.00 0.00 39.71 3.61
4980 7632 1.911293 GCTCAACCGCGCTGATGAAA 61.911 55.000 12.47 0.00 0.00 2.69
5183 7839 7.332926 CAGATGGTGCTGTTTAGATATCCATAC 59.667 40.741 0.00 0.00 35.06 2.39
5785 9543 5.576563 TTCTCCCAAAGAAATCTACCACA 57.423 39.130 0.00 0.00 41.10 4.17
5797 9555 6.650390 CCACCAAATGTATTTTTCTCCCAAAG 59.350 38.462 0.00 0.00 0.00 2.77
5813 9571 5.104374 GTGATATTTGAGTGCCACCAAATG 58.896 41.667 23.16 0.00 41.45 2.32
5928 9687 8.685838 TTTAGTGCCAAGAACTAAACTAATGT 57.314 30.769 4.16 0.00 42.38 2.71
6004 9769 6.007936 TGAAAACACGCTAAATGCATAGTT 57.992 33.333 0.00 0.00 43.06 2.24
6005 9770 5.621197 TGAAAACACGCTAAATGCATAGT 57.379 34.783 0.00 0.00 43.06 2.12
6077 9843 3.968649 CTTGTGGATCAAGTTGGTTGTG 58.031 45.455 2.34 0.00 45.89 3.33
6101 9867 6.413052 ACATGCTGAGTTTGTATTCAGATCT 58.587 36.000 5.73 0.00 42.67 2.75
6171 9937 4.293648 TGACGTGCGTGGACAGGG 62.294 66.667 0.67 0.00 0.00 4.45
6180 9946 0.652071 ATATGTGCATGTGACGTGCG 59.348 50.000 23.06 0.00 45.37 5.34
6182 9948 3.847105 GCATGATATGTGCATGTGACGTG 60.847 47.826 0.00 0.00 43.79 4.49
6330 10104 3.444703 ACATCTATCTCTCACGGCAAC 57.555 47.619 0.00 0.00 0.00 4.17
6622 10396 5.597182 ACCTCGGCAGTATACTCAATTTCTA 59.403 40.000 1.26 0.00 0.00 2.10
6723 10497 0.735287 GAAGCGTTACCAGACGTCCC 60.735 60.000 13.01 0.00 44.50 4.46
6918 10692 2.124151 CCAAATGGGGAGCCTCCG 60.124 66.667 4.29 0.00 37.43 4.63
7246 11044 5.527026 ACCTTTTCATTCTCTGGAAGGAT 57.473 39.130 6.92 0.00 41.03 3.24
7253 11052 4.219288 CCCCTTCAACCTTTTCATTCTCTG 59.781 45.833 0.00 0.00 0.00 3.35
7275 11074 1.903183 AGCCACTCTTGTAGTTCCTCC 59.097 52.381 0.00 0.00 35.76 4.30
7335 11134 3.996150 ACATGTTCTTGCTTTCCTGTG 57.004 42.857 0.00 0.00 0.00 3.66
7412 11211 5.516996 GGTTGGCGCTAGGTTAAATTAATC 58.483 41.667 7.64 0.00 0.00 1.75
7624 11431 3.222173 TCTTTTACATGTGCACCACCT 57.778 42.857 15.69 0.00 32.73 4.00
7936 11754 6.459670 TTTACAACCAAAGGACTTCTTTCC 57.540 37.500 0.00 0.00 43.32 3.13
8060 11878 5.452944 CACACAGCAATTGCAATTTGTTTTC 59.547 36.000 30.89 7.39 45.16 2.29
8073 11891 2.664402 AGGAGTTCCACACAGCAATT 57.336 45.000 0.28 0.00 38.89 2.32
8153 11975 6.534475 TTTGGAAGCTGCATCTAATGAAAT 57.466 33.333 4.55 0.00 0.00 2.17
8166 11989 0.319405 CCTTGGCCTTTTGGAAGCTG 59.681 55.000 3.32 0.00 44.07 4.24
8223 12046 3.441222 CAGATGCCAGCAGTACAAAATGA 59.559 43.478 0.00 0.00 0.00 2.57
8227 12050 1.167851 GCAGATGCCAGCAGTACAAA 58.832 50.000 0.00 0.00 34.31 2.83
8228 12051 0.325933 AGCAGATGCCAGCAGTACAA 59.674 50.000 0.14 0.00 43.38 2.41
8230 12053 2.391469 CAGCAGATGCCAGCAGTAC 58.609 57.895 0.14 0.00 43.38 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.