Multiple sequence alignment - TraesCS6A01G239400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G239400 chr6A 100.000 3926 0 0 1 3926 449637491 449641416 0.000000e+00 7251.0
1 TraesCS6A01G239400 chr6B 94.643 3323 115 20 204 3508 513984362 513981085 0.000000e+00 5092.0
2 TraesCS6A01G239400 chr6B 94.309 123 6 1 3505 3627 513979143 513979022 1.860000e-43 187.0
3 TraesCS6A01G239400 chr6B 90.909 88 8 0 3612 3699 513979006 513978919 6.890000e-23 119.0
4 TraesCS6A01G239400 chr6D 92.394 1512 86 11 2043 3551 312772163 312773648 0.000000e+00 2128.0
5 TraesCS6A01G239400 chr6D 84.934 1374 119 42 433 1782 312770853 312772162 0.000000e+00 1310.0
6 TraesCS6A01G239400 chr6D 93.370 181 11 1 1 180 186714804 186714624 2.330000e-67 267.0
7 TraesCS6A01G239400 chr5D 95.556 180 8 0 1 180 207839727 207839548 4.960000e-74 289.0
8 TraesCS6A01G239400 chr5D 93.889 180 10 1 1 180 208374941 208374763 1.800000e-68 270.0
9 TraesCS6A01G239400 chr1D 95.480 177 8 0 1 177 75145935 75146111 2.310000e-72 283.0
10 TraesCS6A01G239400 chr4D 94.444 180 10 0 1 180 95641098 95640919 1.070000e-70 278.0
11 TraesCS6A01G239400 chr7A 93.785 177 11 0 1 177 451358679 451358855 2.330000e-67 267.0
12 TraesCS6A01G239400 chr3D 93.785 177 11 0 1 177 115104385 115104561 2.330000e-67 267.0
13 TraesCS6A01G239400 chr3D 93.333 180 12 0 1 180 147305568 147305389 2.330000e-67 267.0
14 TraesCS6A01G239400 chr3D 93.785 177 11 0 1 177 278348029 278348205 2.330000e-67 267.0
15 TraesCS6A01G239400 chr7B 78.698 169 30 6 517 682 409174245 409174410 1.490000e-19 108.0
16 TraesCS6A01G239400 chr7B 93.182 44 3 0 3883 3926 588883842 588883885 9.110000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G239400 chr6A 449637491 449641416 3925 False 7251.000000 7251 100.000 1 3926 1 chr6A.!!$F1 3925
1 TraesCS6A01G239400 chr6B 513978919 513984362 5443 True 1799.333333 5092 93.287 204 3699 3 chr6B.!!$R1 3495
2 TraesCS6A01G239400 chr6D 312770853 312773648 2795 False 1719.000000 2128 88.664 433 3551 2 chr6D.!!$F1 3118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.029567 CGCGGACAGGTATCTGACTC 59.970 60.000 10.76 0.00 43.49 3.36 F
92 93 0.036294 TCTGACTCTTCGAGCTCGGA 60.036 55.000 33.98 26.65 40.29 4.55 F
199 200 0.104304 GTACGGGAATGTCCTCGCAT 59.896 55.000 5.44 0.00 36.57 4.73 F
221 222 0.107897 CGAATGTCCCCCGATCAACA 60.108 55.000 0.00 0.00 0.00 3.33 F
230 231 0.171007 CCCGATCAACATGCCACAAC 59.829 55.000 0.00 0.00 0.00 3.32 F
399 401 0.179179 GCGTCAAATTCAGCTCAGCC 60.179 55.000 0.00 0.00 0.00 4.85 F
400 402 0.449388 CGTCAAATTCAGCTCAGCCC 59.551 55.000 0.00 0.00 0.00 5.19 F
514 516 0.530288 TCCGAAGATGACATGTCGCA 59.470 50.000 20.54 5.50 32.21 5.10 F
515 517 1.067213 TCCGAAGATGACATGTCGCAA 60.067 47.619 20.54 4.03 32.21 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1333 0.591170 CCTTGGTAAACGTGTGCCTG 59.409 55.000 14.44 6.9 0.00 4.85 R
1369 1403 1.406898 GGGCCTAATTCAAGCTTCTGC 59.593 52.381 0.84 0.0 40.05 4.26 R
2139 2182 2.453521 ACACGAACATCCTACCTAGCA 58.546 47.619 0.00 0.0 0.00 3.49 R
2488 2532 4.338682 ACGCATACAGTACCTAGAAGAAGG 59.661 45.833 0.00 0.0 42.82 3.46 R
2512 2556 9.614792 ATTGAGGTCTTTAAATATTCGCTTAGT 57.385 29.630 0.00 0.0 0.00 2.24 R
2660 2704 1.147824 CTCGGCCATCCTCTGCATT 59.852 57.895 2.24 0.0 0.00 3.56 R
2680 2724 5.799213 AGGTCTAGAAGAACACCTTGAATG 58.201 41.667 0.00 0.0 35.61 2.67 R
2908 2952 1.200948 TCATCACTGCGACTGACTCTG 59.799 52.381 0.00 0.0 0.00 3.35 R
2933 2977 2.322999 GGCAATACCAAGCTTCGGCG 62.323 60.000 0.00 0.0 41.89 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.216187 TCAACCGATTTTTCAGGTCCA 57.784 42.857 0.00 0.00 37.26 4.02
22 23 2.882137 TCAACCGATTTTTCAGGTCCAC 59.118 45.455 0.00 0.00 37.26 4.02
23 24 1.905637 ACCGATTTTTCAGGTCCACC 58.094 50.000 0.00 0.00 31.69 4.61
24 25 0.802494 CCGATTTTTCAGGTCCACCG 59.198 55.000 0.00 0.00 42.08 4.94
25 26 1.519408 CGATTTTTCAGGTCCACCGT 58.481 50.000 0.00 0.00 42.08 4.83
26 27 1.463444 CGATTTTTCAGGTCCACCGTC 59.537 52.381 0.00 0.00 42.08 4.79
27 28 1.810755 GATTTTTCAGGTCCACCGTCC 59.189 52.381 0.00 0.00 42.08 4.79
28 29 0.533308 TTTTTCAGGTCCACCGTCCG 60.533 55.000 0.00 0.00 42.08 4.79
29 30 1.401318 TTTTCAGGTCCACCGTCCGA 61.401 55.000 0.00 0.00 42.08 4.55
30 31 1.189524 TTTCAGGTCCACCGTCCGAT 61.190 55.000 0.00 0.00 42.08 4.18
31 32 1.189524 TTCAGGTCCACCGTCCGATT 61.190 55.000 0.00 0.00 42.08 3.34
32 33 1.153628 CAGGTCCACCGTCCGATTC 60.154 63.158 0.00 0.00 42.08 2.52
33 34 1.305046 AGGTCCACCGTCCGATTCT 60.305 57.895 0.00 0.00 42.08 2.40
34 35 0.033796 AGGTCCACCGTCCGATTCTA 60.034 55.000 0.00 0.00 42.08 2.10
35 36 0.384669 GGTCCACCGTCCGATTCTAG 59.615 60.000 0.00 0.00 0.00 2.43
36 37 0.384669 GTCCACCGTCCGATTCTAGG 59.615 60.000 0.00 0.00 0.00 3.02
37 38 0.033796 TCCACCGTCCGATTCTAGGT 60.034 55.000 0.00 0.00 35.24 3.08
38 39 0.822164 CCACCGTCCGATTCTAGGTT 59.178 55.000 0.00 0.00 32.04 3.50
39 40 1.202382 CCACCGTCCGATTCTAGGTTC 60.202 57.143 0.00 0.00 32.04 3.62
40 41 1.475280 CACCGTCCGATTCTAGGTTCA 59.525 52.381 0.00 0.00 32.04 3.18
41 42 1.749634 ACCGTCCGATTCTAGGTTCAG 59.250 52.381 0.00 0.00 0.00 3.02
42 43 2.022195 CCGTCCGATTCTAGGTTCAGA 58.978 52.381 0.00 0.00 0.00 3.27
43 44 2.033550 CCGTCCGATTCTAGGTTCAGAG 59.966 54.545 0.00 0.00 0.00 3.35
44 45 2.033550 CGTCCGATTCTAGGTTCAGAGG 59.966 54.545 0.00 0.00 0.00 3.69
45 46 3.288964 GTCCGATTCTAGGTTCAGAGGA 58.711 50.000 0.00 0.00 0.00 3.71
46 47 3.067040 GTCCGATTCTAGGTTCAGAGGAC 59.933 52.174 0.00 0.00 38.77 3.85
47 48 3.024547 CCGATTCTAGGTTCAGAGGACA 58.975 50.000 0.00 0.00 0.00 4.02
48 49 3.067461 CCGATTCTAGGTTCAGAGGACAG 59.933 52.174 0.00 0.00 0.00 3.51
49 50 3.067461 CGATTCTAGGTTCAGAGGACAGG 59.933 52.174 0.00 0.00 0.00 4.00
50 51 2.534042 TCTAGGTTCAGAGGACAGGG 57.466 55.000 0.00 0.00 0.00 4.45
51 52 0.827368 CTAGGTTCAGAGGACAGGGC 59.173 60.000 0.00 0.00 0.00 5.19
52 53 0.970937 TAGGTTCAGAGGACAGGGCG 60.971 60.000 0.00 0.00 0.00 6.13
53 54 2.584391 GGTTCAGAGGACAGGGCGT 61.584 63.158 0.00 0.00 0.00 5.68
54 55 1.374758 GTTCAGAGGACAGGGCGTG 60.375 63.158 5.50 5.50 0.00 5.34
55 56 1.837051 TTCAGAGGACAGGGCGTGT 60.837 57.895 13.36 13.36 44.49 4.49
61 62 2.737376 GACAGGGCGTGTCGTTCC 60.737 66.667 22.69 2.55 46.22 3.62
62 63 4.657824 ACAGGGCGTGTCGTTCCG 62.658 66.667 7.07 0.00 31.90 4.30
68 69 4.986587 CGTGTCGTTCCGCGGACA 62.987 66.667 31.19 20.99 41.72 4.02
69 70 3.103911 GTGTCGTTCCGCGGACAG 61.104 66.667 31.19 24.37 41.72 3.51
70 71 4.351938 TGTCGTTCCGCGGACAGG 62.352 66.667 31.19 22.75 41.72 4.00
71 72 4.353437 GTCGTTCCGCGGACAGGT 62.353 66.667 31.19 0.00 41.72 4.00
72 73 2.672651 TCGTTCCGCGGACAGGTA 60.673 61.111 31.19 10.55 41.72 3.08
73 74 2.048023 TCGTTCCGCGGACAGGTAT 61.048 57.895 31.19 0.00 41.72 2.73
74 75 1.588139 CGTTCCGCGGACAGGTATC 60.588 63.158 31.19 11.07 36.85 2.24
75 76 1.814527 GTTCCGCGGACAGGTATCT 59.185 57.895 31.19 0.00 0.00 1.98
76 77 0.527817 GTTCCGCGGACAGGTATCTG 60.528 60.000 31.19 0.04 46.10 2.90
77 78 0.681887 TTCCGCGGACAGGTATCTGA 60.682 55.000 31.19 5.94 43.49 3.27
78 79 1.065928 CCGCGGACAGGTATCTGAC 59.934 63.158 24.07 2.95 43.49 3.51
79 80 1.384989 CCGCGGACAGGTATCTGACT 61.385 60.000 24.07 0.00 43.49 3.41
80 81 0.029567 CGCGGACAGGTATCTGACTC 59.970 60.000 10.76 0.00 43.49 3.36
81 82 1.394618 GCGGACAGGTATCTGACTCT 58.605 55.000 10.76 0.00 43.49 3.24
82 83 1.751924 GCGGACAGGTATCTGACTCTT 59.248 52.381 10.76 0.00 43.49 2.85
83 84 2.223618 GCGGACAGGTATCTGACTCTTC 60.224 54.545 10.76 0.00 43.49 2.87
84 85 2.032302 CGGACAGGTATCTGACTCTTCG 59.968 54.545 10.76 0.00 43.49 3.79
85 86 3.280295 GGACAGGTATCTGACTCTTCGA 58.720 50.000 10.76 0.00 43.49 3.71
86 87 3.314080 GGACAGGTATCTGACTCTTCGAG 59.686 52.174 10.76 0.00 43.49 4.04
87 88 2.685897 ACAGGTATCTGACTCTTCGAGC 59.314 50.000 10.76 0.00 43.49 5.03
88 89 2.948979 CAGGTATCTGACTCTTCGAGCT 59.051 50.000 0.00 0.00 43.49 4.09
89 90 3.003275 CAGGTATCTGACTCTTCGAGCTC 59.997 52.174 2.73 2.73 43.49 4.09
90 91 2.032377 GGTATCTGACTCTTCGAGCTCG 60.032 54.545 30.03 30.03 41.45 5.03
91 92 1.021202 ATCTGACTCTTCGAGCTCGG 58.979 55.000 33.98 20.86 40.29 4.63
92 93 0.036294 TCTGACTCTTCGAGCTCGGA 60.036 55.000 33.98 26.65 40.29 4.55
93 94 0.805614 CTGACTCTTCGAGCTCGGAA 59.194 55.000 33.98 23.96 40.29 4.30
94 95 1.200252 CTGACTCTTCGAGCTCGGAAA 59.800 52.381 33.98 21.32 40.29 3.13
95 96 1.819288 TGACTCTTCGAGCTCGGAAAT 59.181 47.619 33.98 14.99 40.29 2.17
96 97 2.159366 TGACTCTTCGAGCTCGGAAATC 60.159 50.000 33.98 22.30 40.29 2.17
97 98 1.135333 ACTCTTCGAGCTCGGAAATCC 59.865 52.381 33.98 0.00 40.29 3.01
98 99 4.397731 ACTCTTCGAGCTCGGAAATCCG 62.398 54.545 33.98 14.97 46.32 4.18
115 116 3.733236 CGAACATAGTTCGGCCTCA 57.267 52.632 20.89 0.00 38.19 3.86
116 117 2.004583 CGAACATAGTTCGGCCTCAA 57.995 50.000 20.89 0.00 38.19 3.02
117 118 2.550978 CGAACATAGTTCGGCCTCAAT 58.449 47.619 20.89 0.00 38.19 2.57
118 119 3.713288 CGAACATAGTTCGGCCTCAATA 58.287 45.455 20.89 0.00 38.19 1.90
119 120 4.307432 CGAACATAGTTCGGCCTCAATAT 58.693 43.478 20.89 0.00 38.19 1.28
120 121 5.466819 CGAACATAGTTCGGCCTCAATATA 58.533 41.667 20.89 0.00 38.19 0.86
121 122 5.573282 CGAACATAGTTCGGCCTCAATATAG 59.427 44.000 20.89 0.00 38.19 1.31
122 123 6.569801 CGAACATAGTTCGGCCTCAATATAGA 60.570 42.308 20.89 0.00 38.19 1.98
123 124 6.274157 ACATAGTTCGGCCTCAATATAGAG 57.726 41.667 0.00 0.00 35.39 2.43
138 139 9.442047 CTCAATATAGAGGAAGAGTTGTTGTTT 57.558 33.333 0.00 0.00 31.94 2.83
139 140 9.793259 TCAATATAGAGGAAGAGTTGTTGTTTT 57.207 29.630 0.00 0.00 0.00 2.43
140 141 9.831737 CAATATAGAGGAAGAGTTGTTGTTTTG 57.168 33.333 0.00 0.00 0.00 2.44
141 142 4.639135 AGAGGAAGAGTTGTTGTTTTGC 57.361 40.909 0.00 0.00 0.00 3.68
142 143 4.273318 AGAGGAAGAGTTGTTGTTTTGCT 58.727 39.130 0.00 0.00 0.00 3.91
143 144 4.336713 AGAGGAAGAGTTGTTGTTTTGCTC 59.663 41.667 0.00 0.00 36.74 4.26
144 145 3.381590 AGGAAGAGTTGTTGTTTTGCTCC 59.618 43.478 0.00 0.00 0.00 4.70
145 146 3.381590 GGAAGAGTTGTTGTTTTGCTCCT 59.618 43.478 0.00 0.00 0.00 3.69
146 147 4.498177 GGAAGAGTTGTTGTTTTGCTCCTC 60.498 45.833 0.00 0.00 0.00 3.71
147 148 3.891049 AGAGTTGTTGTTTTGCTCCTCT 58.109 40.909 0.00 0.00 0.00 3.69
148 149 5.036117 AGAGTTGTTGTTTTGCTCCTCTA 57.964 39.130 0.00 0.00 0.00 2.43
149 150 4.816925 AGAGTTGTTGTTTTGCTCCTCTAC 59.183 41.667 0.00 0.00 0.00 2.59
150 151 4.781934 AGTTGTTGTTTTGCTCCTCTACT 58.218 39.130 0.00 0.00 0.00 2.57
151 152 5.925509 AGTTGTTGTTTTGCTCCTCTACTA 58.074 37.500 0.00 0.00 0.00 1.82
152 153 5.758784 AGTTGTTGTTTTGCTCCTCTACTAC 59.241 40.000 0.00 0.00 0.00 2.73
153 154 5.546621 TGTTGTTTTGCTCCTCTACTACT 57.453 39.130 0.00 0.00 0.00 2.57
154 155 5.297547 TGTTGTTTTGCTCCTCTACTACTG 58.702 41.667 0.00 0.00 0.00 2.74
155 156 3.926616 TGTTTTGCTCCTCTACTACTGC 58.073 45.455 0.00 0.00 0.00 4.40
156 157 3.578716 TGTTTTGCTCCTCTACTACTGCT 59.421 43.478 0.00 0.00 0.00 4.24
157 158 4.770531 TGTTTTGCTCCTCTACTACTGCTA 59.229 41.667 0.00 0.00 0.00 3.49
158 159 5.422331 TGTTTTGCTCCTCTACTACTGCTAT 59.578 40.000 0.00 0.00 0.00 2.97
159 160 5.776173 TTTGCTCCTCTACTACTGCTATC 57.224 43.478 0.00 0.00 0.00 2.08
160 161 4.715534 TGCTCCTCTACTACTGCTATCT 57.284 45.455 0.00 0.00 0.00 1.98
161 162 4.393834 TGCTCCTCTACTACTGCTATCTG 58.606 47.826 0.00 0.00 0.00 2.90
162 163 4.103311 TGCTCCTCTACTACTGCTATCTGA 59.897 45.833 0.00 0.00 0.00 3.27
163 164 5.222027 TGCTCCTCTACTACTGCTATCTGAT 60.222 44.000 0.00 0.00 0.00 2.90
164 165 5.123820 GCTCCTCTACTACTGCTATCTGATG 59.876 48.000 0.00 0.00 0.00 3.07
165 166 5.565509 TCCTCTACTACTGCTATCTGATGG 58.434 45.833 0.00 0.00 0.00 3.51
166 167 4.704540 CCTCTACTACTGCTATCTGATGGG 59.295 50.000 0.00 0.00 0.00 4.00
167 168 5.321102 CTCTACTACTGCTATCTGATGGGT 58.679 45.833 0.00 0.00 0.00 4.51
168 169 5.073428 TCTACTACTGCTATCTGATGGGTG 58.927 45.833 0.00 0.00 0.00 4.61
169 170 3.916035 ACTACTGCTATCTGATGGGTGA 58.084 45.455 0.00 0.00 0.00 4.02
170 171 4.487804 ACTACTGCTATCTGATGGGTGAT 58.512 43.478 0.00 0.00 0.00 3.06
171 172 4.526262 ACTACTGCTATCTGATGGGTGATC 59.474 45.833 0.00 0.00 0.00 2.92
172 173 2.298446 ACTGCTATCTGATGGGTGATCG 59.702 50.000 0.00 0.00 33.17 3.69
173 174 1.620323 TGCTATCTGATGGGTGATCGG 59.380 52.381 0.00 0.00 38.67 4.18
174 175 1.674221 GCTATCTGATGGGTGATCGGC 60.674 57.143 0.00 0.00 37.37 5.54
175 176 0.603065 TATCTGATGGGTGATCGGCG 59.397 55.000 0.00 0.00 37.37 6.46
176 177 2.104572 ATCTGATGGGTGATCGGCGG 62.105 60.000 7.21 0.00 37.37 6.13
177 178 3.814615 CTGATGGGTGATCGGCGGG 62.815 68.421 7.21 0.00 33.17 6.13
178 179 4.626081 GATGGGTGATCGGCGGGG 62.626 72.222 7.21 0.00 0.00 5.73
182 183 2.836360 GGTGATCGGCGGGGAGTA 60.836 66.667 7.21 0.00 0.00 2.59
183 184 2.416260 GTGATCGGCGGGGAGTAC 59.584 66.667 7.21 0.00 0.00 2.73
184 185 3.214123 TGATCGGCGGGGAGTACG 61.214 66.667 7.21 0.00 0.00 3.67
185 186 3.974757 GATCGGCGGGGAGTACGG 61.975 72.222 7.21 0.00 0.00 4.02
189 190 3.159347 GGCGGGGAGTACGGGAAT 61.159 66.667 0.00 0.00 0.00 3.01
190 191 2.108362 GCGGGGAGTACGGGAATG 59.892 66.667 0.00 0.00 0.00 2.67
191 192 2.728435 GCGGGGAGTACGGGAATGT 61.728 63.158 0.00 0.00 0.00 2.71
192 193 1.440476 CGGGGAGTACGGGAATGTC 59.560 63.158 0.00 0.00 0.00 3.06
193 194 1.828081 GGGGAGTACGGGAATGTCC 59.172 63.158 0.00 0.00 35.23 4.02
194 195 0.690077 GGGGAGTACGGGAATGTCCT 60.690 60.000 0.00 0.00 36.57 3.85
195 196 0.751452 GGGAGTACGGGAATGTCCTC 59.249 60.000 0.00 0.00 36.57 3.71
196 197 0.384669 GGAGTACGGGAATGTCCTCG 59.615 60.000 0.00 0.00 36.57 4.63
197 198 0.248949 GAGTACGGGAATGTCCTCGC 60.249 60.000 5.44 0.00 36.57 5.03
198 199 0.968901 AGTACGGGAATGTCCTCGCA 60.969 55.000 5.44 0.00 36.57 5.10
199 200 0.104304 GTACGGGAATGTCCTCGCAT 59.896 55.000 5.44 0.00 36.57 4.73
200 201 0.387929 TACGGGAATGTCCTCGCATC 59.612 55.000 5.44 0.00 36.57 3.91
201 202 1.330655 ACGGGAATGTCCTCGCATCT 61.331 55.000 5.44 0.00 36.57 2.90
202 203 0.598680 CGGGAATGTCCTCGCATCTC 60.599 60.000 0.00 0.00 36.57 2.75
221 222 0.107897 CGAATGTCCCCCGATCAACA 60.108 55.000 0.00 0.00 0.00 3.33
222 223 1.475034 CGAATGTCCCCCGATCAACAT 60.475 52.381 0.00 0.00 33.92 2.71
230 231 0.171007 CCCGATCAACATGCCACAAC 59.829 55.000 0.00 0.00 0.00 3.32
244 245 2.049433 CAACGACTTCGGCTCCGT 60.049 61.111 8.28 0.00 44.95 4.69
246 247 2.558286 AACGACTTCGGCTCCGTCA 61.558 57.895 8.28 0.00 44.95 4.35
251 252 2.027625 CTTCGGCTCCGTCAACCAC 61.028 63.158 8.28 0.00 40.74 4.16
273 274 1.078497 CGGAGCTATGTTGTGGCCA 60.078 57.895 0.00 0.00 34.31 5.36
337 339 6.681729 TTATAGAAATGTACCTAGGCCCAG 57.318 41.667 9.30 0.00 0.00 4.45
349 351 2.429927 GGCCCAGCCCATGAAATAC 58.570 57.895 0.00 0.00 44.06 1.89
350 352 0.396974 GGCCCAGCCCATGAAATACA 60.397 55.000 0.00 0.00 44.06 2.29
351 353 0.746659 GCCCAGCCCATGAAATACAC 59.253 55.000 0.00 0.00 0.00 2.90
353 355 2.455557 CCCAGCCCATGAAATACACAA 58.544 47.619 0.00 0.00 0.00 3.33
354 356 3.033184 CCCAGCCCATGAAATACACAAT 58.967 45.455 0.00 0.00 0.00 2.71
355 357 3.181473 CCCAGCCCATGAAATACACAATG 60.181 47.826 0.00 0.00 0.00 2.82
366 368 4.970662 AATACACAATGCTACAAGGCAG 57.029 40.909 0.00 0.00 45.75 4.85
394 396 5.525378 CCTAGATTTAGCGTCAAATTCAGCT 59.475 40.000 0.00 0.00 43.07 4.24
396 398 4.937620 AGATTTAGCGTCAAATTCAGCTCA 59.062 37.500 0.00 0.00 40.73 4.26
399 401 0.179179 GCGTCAAATTCAGCTCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
400 402 0.449388 CGTCAAATTCAGCTCAGCCC 59.551 55.000 0.00 0.00 0.00 5.19
424 426 3.753797 CCCAGTTTTCTGTTTCTAGCTCC 59.246 47.826 0.00 0.00 45.68 4.70
425 427 3.433615 CCAGTTTTCTGTTTCTAGCTCCG 59.566 47.826 0.00 0.00 45.68 4.63
480 482 2.102252 TCACAAAGCCCAATTGGACAAC 59.898 45.455 26.60 11.82 37.39 3.32
482 484 1.339610 CAAAGCCCAATTGGACAACGA 59.660 47.619 26.60 0.00 37.39 3.85
511 513 4.272018 CCTCAAATCCGAAGATGACATGTC 59.728 45.833 19.27 19.27 31.29 3.06
514 516 0.530288 TCCGAAGATGACATGTCGCA 59.470 50.000 20.54 5.50 32.21 5.10
515 517 1.067213 TCCGAAGATGACATGTCGCAA 60.067 47.619 20.54 4.03 32.21 4.85
573 575 6.500589 TGTATTTTCTATCTCTTGGGAGGG 57.499 41.667 0.00 0.00 39.86 4.30
675 677 8.037382 ACTTGTGATGAATGAATTAGTGACAG 57.963 34.615 0.00 0.00 0.00 3.51
996 1030 2.037136 CCACCTCGAGCAAGCAAGG 61.037 63.158 6.99 6.61 34.94 3.61
1279 1313 1.790755 CGTCGTTGTGAAAGATCCCA 58.209 50.000 0.00 0.00 0.00 4.37
1285 1319 3.690460 GTTGTGAAAGATCCCATGAGGT 58.310 45.455 0.00 0.00 36.75 3.85
1286 1320 4.082125 GTTGTGAAAGATCCCATGAGGTT 58.918 43.478 0.00 0.00 36.75 3.50
1299 1333 5.420739 TCCCATGAGGTTTTAATTGCTTACC 59.579 40.000 0.00 0.00 36.75 2.85
1320 1354 1.520600 GGCACACGTTTACCAAGGGG 61.521 60.000 0.00 0.00 41.29 4.79
1369 1403 5.263968 ACGGATTTGTGTCTAGTAGATGG 57.736 43.478 2.51 0.00 0.00 3.51
1454 1488 1.895020 TTAGGTAGGCCGCACACTGG 61.895 60.000 11.97 0.00 40.50 4.00
1554 1588 1.947013 CTGTGTGCTGTGCTGAAGG 59.053 57.895 0.00 0.00 0.00 3.46
1561 1595 1.374190 CTGTGCTGAAGGGCTGTCT 59.626 57.895 0.00 0.00 0.00 3.41
1592 1626 4.161377 GCTGTTACTCTCTCCAGATCCTTT 59.839 45.833 0.00 0.00 0.00 3.11
1748 1783 4.448210 TGTGACTGAACTTTAGGGTTCAC 58.552 43.478 6.03 0.00 46.91 3.18
1786 1825 2.565391 TGGCTTTACGATGAGTTGAGGA 59.435 45.455 0.00 0.00 0.00 3.71
1819 1858 4.707030 TTGATGATTGCTTAACAGGCAG 57.293 40.909 0.00 0.00 40.90 4.85
1875 1914 5.570320 AGTACTGCAGTTGGGATGTAATTT 58.430 37.500 27.06 0.00 0.00 1.82
1984 2026 3.711863 ACCACATAAAGGCCAATCATGT 58.288 40.909 5.01 5.97 0.00 3.21
1988 2030 6.040842 ACCACATAAAGGCCAATCATGTTATC 59.959 38.462 5.01 0.00 0.00 1.75
2018 2060 2.094906 TGTCGTCTGTCATTAGAACCGG 60.095 50.000 0.00 0.00 0.00 5.28
2139 2182 6.852420 ATATCGTATGTTACATACCTGGCT 57.148 37.500 24.41 9.29 0.00 4.75
2512 2556 5.530171 CCTTCTTCTAGGTACTGTATGCGTA 59.470 44.000 0.00 0.00 41.52 4.42
2542 2586 8.956426 AGCGAATATTTAAAGACCTCAATGAAA 58.044 29.630 0.00 0.00 0.00 2.69
2631 2675 7.459795 TGCATTTGTCAAGGATTTGTGTATA 57.540 32.000 0.00 0.00 35.73 1.47
2680 2724 2.037620 ATGCAGAGGATGGCCGAGAC 62.038 60.000 0.00 0.00 39.96 3.36
2804 2848 3.599343 CCTGCTGCACTTATGTCTGTAA 58.401 45.455 0.00 0.00 0.00 2.41
2908 2952 5.220873 GGACAACTTCAGAAACTTCTTGGTC 60.221 44.000 0.00 0.00 34.74 4.02
2951 2995 1.062525 CGCCGAAGCTTGGTATTGC 59.937 57.895 2.10 0.00 36.60 3.56
2992 3036 1.750193 ACATGCGGTGTTCCTTATGG 58.250 50.000 0.00 0.00 38.01 2.74
3008 3053 4.415512 CCTTATGGGAGGAATGGAACCTTA 59.584 45.833 0.00 0.00 39.25 2.69
3196 3241 7.800300 AAGTACTCTACTTCCTCTTCCATTT 57.200 36.000 0.00 0.00 45.38 2.32
3204 3249 8.041323 TCTACTTCCTCTTCCATTTTGTATCAC 58.959 37.037 0.00 0.00 0.00 3.06
3282 3333 2.423577 AGTAGTGAAATGTTGTCCCGC 58.576 47.619 0.00 0.00 0.00 6.13
3316 3367 4.397420 TCTTTGCAGCATTCCTGAACTTA 58.603 39.130 0.00 0.00 44.64 2.24
3399 3450 3.763931 CCACCTCCATGGGTTTTCA 57.236 52.632 13.02 0.00 41.11 2.69
3400 3451 1.256812 CCACCTCCATGGGTTTTCAC 58.743 55.000 13.02 0.00 41.11 3.18
3441 3492 6.639632 AAAATTAGAAGAGCTTTGCTGTGA 57.360 33.333 0.00 0.00 39.88 3.58
3493 3544 2.971330 TGCCTGGTGAATTGGAAAACAT 59.029 40.909 0.00 0.00 0.00 2.71
3544 5540 4.563140 TCTTGGACCTTTACACCATACC 57.437 45.455 0.00 0.00 33.56 2.73
3555 5551 1.071699 ACACCATACCACTCAGCGTTT 59.928 47.619 0.00 0.00 0.00 3.60
3568 5564 3.650139 TCAGCGTTTAGGTTGAGACTTC 58.350 45.455 0.00 0.00 0.00 3.01
3621 5617 2.308039 AACGCCGCGACAAGAGTTC 61.308 57.895 21.79 0.00 0.00 3.01
3657 5684 5.355350 GGGAAGAACATGTATTTCTGGACTG 59.645 44.000 17.02 0.00 33.46 3.51
3667 5694 0.109272 TTCTGGACTGTCGTCGATGC 60.109 55.000 0.00 0.00 41.16 3.91
3672 5699 2.583319 CTGTCGTCGATGCGCCAT 60.583 61.111 4.18 0.00 0.00 4.40
3688 5715 1.953559 CCATCGACCCGAAATCATGT 58.046 50.000 0.00 0.00 39.99 3.21
3689 5716 1.599071 CCATCGACCCGAAATCATGTG 59.401 52.381 0.00 0.00 39.99 3.21
3692 5719 1.024046 CGACCCGAAATCATGTGCCA 61.024 55.000 0.00 0.00 0.00 4.92
3699 5726 2.095853 CGAAATCATGTGCCACCACTAC 59.904 50.000 0.00 0.00 42.54 2.73
3700 5727 2.128771 AATCATGTGCCACCACTACC 57.871 50.000 0.00 0.00 42.54 3.18
3701 5728 1.289160 ATCATGTGCCACCACTACCT 58.711 50.000 0.00 0.00 42.54 3.08
3702 5729 0.613260 TCATGTGCCACCACTACCTC 59.387 55.000 0.00 0.00 42.54 3.85
3703 5730 0.392998 CATGTGCCACCACTACCTCC 60.393 60.000 0.00 0.00 42.54 4.30
3704 5731 1.899437 ATGTGCCACCACTACCTCCG 61.899 60.000 0.00 0.00 42.54 4.63
3705 5732 3.702048 TGCCACCACTACCTCCGC 61.702 66.667 0.00 0.00 0.00 5.54
3706 5733 4.468689 GCCACCACTACCTCCGCC 62.469 72.222 0.00 0.00 0.00 6.13
3707 5734 3.000819 CCACCACTACCTCCGCCA 61.001 66.667 0.00 0.00 0.00 5.69
3708 5735 2.264794 CACCACTACCTCCGCCAC 59.735 66.667 0.00 0.00 0.00 5.01
3709 5736 2.119832 ACCACTACCTCCGCCACT 59.880 61.111 0.00 0.00 0.00 4.00
3710 5737 2.283529 ACCACTACCTCCGCCACTG 61.284 63.158 0.00 0.00 0.00 3.66
3711 5738 2.125512 CACTACCTCCGCCACTGC 60.126 66.667 0.00 0.00 0.00 4.40
3712 5739 3.391382 ACTACCTCCGCCACTGCC 61.391 66.667 0.00 0.00 0.00 4.85
3713 5740 3.390521 CTACCTCCGCCACTGCCA 61.391 66.667 0.00 0.00 0.00 4.92
3714 5741 2.925706 TACCTCCGCCACTGCCAA 60.926 61.111 0.00 0.00 0.00 4.52
3715 5742 3.248446 TACCTCCGCCACTGCCAAC 62.248 63.158 0.00 0.00 0.00 3.77
3716 5743 4.641645 CCTCCGCCACTGCCAACA 62.642 66.667 0.00 0.00 0.00 3.33
3717 5744 2.360350 CTCCGCCACTGCCAACAT 60.360 61.111 0.00 0.00 0.00 2.71
3718 5745 2.359850 TCCGCCACTGCCAACATC 60.360 61.111 0.00 0.00 0.00 3.06
3719 5746 2.360350 CCGCCACTGCCAACATCT 60.360 61.111 0.00 0.00 0.00 2.90
3720 5747 2.401766 CCGCCACTGCCAACATCTC 61.402 63.158 0.00 0.00 0.00 2.75
3721 5748 2.743752 CGCCACTGCCAACATCTCG 61.744 63.158 0.00 0.00 0.00 4.04
3722 5749 2.401766 GCCACTGCCAACATCTCGG 61.402 63.158 0.00 0.00 0.00 4.63
3723 5750 1.003355 CCACTGCCAACATCTCGGT 60.003 57.895 0.00 0.00 0.00 4.69
3724 5751 0.249120 CCACTGCCAACATCTCGGTA 59.751 55.000 0.00 0.00 0.00 4.02
3725 5752 1.134401 CCACTGCCAACATCTCGGTAT 60.134 52.381 0.00 0.00 0.00 2.73
3726 5753 2.205074 CACTGCCAACATCTCGGTATC 58.795 52.381 0.00 0.00 0.00 2.24
3727 5754 2.111384 ACTGCCAACATCTCGGTATCT 58.889 47.619 0.00 0.00 0.00 1.98
3728 5755 2.101582 ACTGCCAACATCTCGGTATCTC 59.898 50.000 0.00 0.00 0.00 2.75
3729 5756 2.101415 CTGCCAACATCTCGGTATCTCA 59.899 50.000 0.00 0.00 0.00 3.27
3730 5757 2.159099 TGCCAACATCTCGGTATCTCAC 60.159 50.000 0.00 0.00 0.00 3.51
3731 5758 2.159099 GCCAACATCTCGGTATCTCACA 60.159 50.000 0.00 0.00 0.00 3.58
3732 5759 3.711086 CCAACATCTCGGTATCTCACAG 58.289 50.000 0.00 0.00 0.00 3.66
3733 5760 3.491619 CCAACATCTCGGTATCTCACAGG 60.492 52.174 0.00 0.00 0.00 4.00
3734 5761 3.298686 ACATCTCGGTATCTCACAGGA 57.701 47.619 0.00 0.00 0.00 3.86
3735 5762 3.218453 ACATCTCGGTATCTCACAGGAG 58.782 50.000 0.00 0.00 42.80 3.69
3736 5763 3.218453 CATCTCGGTATCTCACAGGAGT 58.782 50.000 0.00 0.00 42.05 3.85
3737 5764 4.141459 ACATCTCGGTATCTCACAGGAGTA 60.141 45.833 0.00 0.00 42.05 2.59
3738 5765 4.498894 TCTCGGTATCTCACAGGAGTAA 57.501 45.455 0.00 0.00 42.05 2.24
3739 5766 4.197750 TCTCGGTATCTCACAGGAGTAAC 58.802 47.826 0.00 0.00 42.05 2.50
3740 5767 2.941064 TCGGTATCTCACAGGAGTAACG 59.059 50.000 0.00 0.00 42.05 3.18
3741 5768 2.681848 CGGTATCTCACAGGAGTAACGT 59.318 50.000 0.00 0.00 42.05 3.99
3742 5769 3.242673 CGGTATCTCACAGGAGTAACGTC 60.243 52.174 0.00 0.00 42.05 4.34
3743 5770 3.242673 GGTATCTCACAGGAGTAACGTCG 60.243 52.174 0.00 0.00 42.05 5.12
3744 5771 1.888215 TCTCACAGGAGTAACGTCGT 58.112 50.000 0.00 0.00 42.05 4.34
3745 5772 2.224606 TCTCACAGGAGTAACGTCGTT 58.775 47.619 15.97 15.97 42.05 3.85
3746 5773 2.620115 TCTCACAGGAGTAACGTCGTTT 59.380 45.455 16.98 0.00 42.05 3.60
3747 5774 2.978489 CTCACAGGAGTAACGTCGTTTC 59.022 50.000 16.98 11.40 36.36 2.78
3748 5775 2.056577 CACAGGAGTAACGTCGTTTCC 58.943 52.381 16.98 17.28 0.00 3.13
3749 5776 1.682854 ACAGGAGTAACGTCGTTTCCA 59.317 47.619 24.01 3.63 28.08 3.53
3750 5777 2.101249 ACAGGAGTAACGTCGTTTCCAA 59.899 45.455 24.01 3.29 28.08 3.53
3751 5778 2.473984 CAGGAGTAACGTCGTTTCCAAC 59.526 50.000 24.01 14.01 28.08 3.77
3752 5779 1.794701 GGAGTAACGTCGTTTCCAACC 59.205 52.381 16.98 10.85 0.00 3.77
3753 5780 1.794701 GAGTAACGTCGTTTCCAACCC 59.205 52.381 16.98 0.00 0.00 4.11
3754 5781 1.413812 AGTAACGTCGTTTCCAACCCT 59.586 47.619 16.98 0.00 0.00 4.34
3755 5782 2.627699 AGTAACGTCGTTTCCAACCCTA 59.372 45.455 16.98 0.00 0.00 3.53
3756 5783 2.159327 AACGTCGTTTCCAACCCTAG 57.841 50.000 4.40 0.00 0.00 3.02
3757 5784 0.320160 ACGTCGTTTCCAACCCTAGC 60.320 55.000 0.00 0.00 0.00 3.42
3758 5785 0.037605 CGTCGTTTCCAACCCTAGCT 60.038 55.000 0.00 0.00 0.00 3.32
3759 5786 1.203052 CGTCGTTTCCAACCCTAGCTA 59.797 52.381 0.00 0.00 0.00 3.32
3760 5787 2.614779 GTCGTTTCCAACCCTAGCTAC 58.385 52.381 0.00 0.00 0.00 3.58
3761 5788 1.551883 TCGTTTCCAACCCTAGCTACC 59.448 52.381 0.00 0.00 0.00 3.18
3762 5789 1.738030 CGTTTCCAACCCTAGCTACCG 60.738 57.143 0.00 0.00 0.00 4.02
3763 5790 0.251073 TTTCCAACCCTAGCTACCGC 59.749 55.000 0.00 0.00 0.00 5.68
3764 5791 1.619807 TTCCAACCCTAGCTACCGCC 61.620 60.000 0.00 0.00 36.60 6.13
3765 5792 2.363975 CCAACCCTAGCTACCGCCA 61.364 63.158 0.00 0.00 36.60 5.69
3766 5793 1.153429 CAACCCTAGCTACCGCCAC 60.153 63.158 0.00 0.00 36.60 5.01
3767 5794 2.364780 AACCCTAGCTACCGCCACC 61.365 63.158 0.00 0.00 36.60 4.61
3768 5795 2.444140 CCCTAGCTACCGCCACCT 60.444 66.667 0.00 0.00 36.60 4.00
3769 5796 1.152610 CCCTAGCTACCGCCACCTA 60.153 63.158 0.00 0.00 36.60 3.08
3770 5797 1.179814 CCCTAGCTACCGCCACCTAG 61.180 65.000 0.00 0.00 36.60 3.02
3771 5798 0.178998 CCTAGCTACCGCCACCTAGA 60.179 60.000 0.00 0.00 36.60 2.43
3772 5799 1.548128 CCTAGCTACCGCCACCTAGAT 60.548 57.143 0.00 0.00 36.60 1.98
3773 5800 1.813786 CTAGCTACCGCCACCTAGATC 59.186 57.143 0.00 0.00 36.60 2.75
3774 5801 0.186386 AGCTACCGCCACCTAGATCT 59.814 55.000 0.00 0.00 36.60 2.75
3775 5802 1.041437 GCTACCGCCACCTAGATCTT 58.959 55.000 0.00 0.00 0.00 2.40
3776 5803 1.000052 GCTACCGCCACCTAGATCTTC 60.000 57.143 0.00 0.00 0.00 2.87
3777 5804 2.588620 CTACCGCCACCTAGATCTTCT 58.411 52.381 0.00 0.00 0.00 2.85
3778 5805 1.404843 ACCGCCACCTAGATCTTCTC 58.595 55.000 0.00 0.00 0.00 2.87
3779 5806 1.063567 ACCGCCACCTAGATCTTCTCT 60.064 52.381 0.00 0.00 38.06 3.10
3780 5807 1.611491 CCGCCACCTAGATCTTCTCTC 59.389 57.143 0.00 0.00 35.28 3.20
3781 5808 1.611491 CGCCACCTAGATCTTCTCTCC 59.389 57.143 0.00 0.00 35.28 3.71
3782 5809 2.751479 CGCCACCTAGATCTTCTCTCCT 60.751 54.545 0.00 0.00 35.28 3.69
3783 5810 2.890945 GCCACCTAGATCTTCTCTCCTC 59.109 54.545 0.00 0.00 35.28 3.71
3784 5811 3.496331 CCACCTAGATCTTCTCTCCTCC 58.504 54.545 0.00 0.00 35.28 4.30
3785 5812 3.496331 CACCTAGATCTTCTCTCCTCCC 58.504 54.545 0.00 0.00 35.28 4.30
3786 5813 2.449345 ACCTAGATCTTCTCTCCTCCCC 59.551 54.545 0.00 0.00 35.28 4.81
3787 5814 2.225267 CCTAGATCTTCTCTCCTCCCCC 60.225 59.091 0.00 0.00 35.28 5.40
3788 5815 1.631536 AGATCTTCTCTCCTCCCCCT 58.368 55.000 0.00 0.00 0.00 4.79
3789 5816 1.503347 AGATCTTCTCTCCTCCCCCTC 59.497 57.143 0.00 0.00 0.00 4.30
3790 5817 0.565674 ATCTTCTCTCCTCCCCCTCC 59.434 60.000 0.00 0.00 0.00 4.30
3791 5818 1.074850 CTTCTCTCCTCCCCCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
3792 5819 1.550374 TTCTCTCCTCCCCCTCCCT 60.550 63.158 0.00 0.00 0.00 4.20
3793 5820 1.595058 TTCTCTCCTCCCCCTCCCTC 61.595 65.000 0.00 0.00 0.00 4.30
3794 5821 2.018086 CTCTCCTCCCCCTCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
3795 5822 2.015726 TCTCCTCCCCCTCCCTCTC 61.016 68.421 0.00 0.00 0.00 3.20
3796 5823 3.430497 TCCTCCCCCTCCCTCTCG 61.430 72.222 0.00 0.00 0.00 4.04
3797 5824 4.548513 CCTCCCCCTCCCTCTCGG 62.549 77.778 0.00 0.00 0.00 4.63
3808 5835 4.803426 CTCTCGGCCTGGCGTGAC 62.803 72.222 13.40 0.00 0.00 3.67
3813 5840 4.803426 GGCCTGGCGTGACGAGAG 62.803 72.222 10.10 2.59 0.00 3.20
3820 5847 4.803426 CGTGACGAGAGCCTGCCC 62.803 72.222 0.00 0.00 0.00 5.36
3821 5848 3.386237 GTGACGAGAGCCTGCCCT 61.386 66.667 0.00 0.00 0.00 5.19
3822 5849 2.604686 TGACGAGAGCCTGCCCTT 60.605 61.111 0.00 0.00 0.00 3.95
3823 5850 2.217038 TGACGAGAGCCTGCCCTTT 61.217 57.895 0.00 0.00 0.00 3.11
3824 5851 1.003233 GACGAGAGCCTGCCCTTTT 60.003 57.895 0.00 0.00 0.00 2.27
3825 5852 0.606673 GACGAGAGCCTGCCCTTTTT 60.607 55.000 0.00 0.00 0.00 1.94
3848 5875 9.952030 TTTTTGTCTTTTCCTTAGGTTTTGATT 57.048 25.926 0.00 0.00 0.00 2.57
3849 5876 9.952030 TTTTGTCTTTTCCTTAGGTTTTGATTT 57.048 25.926 0.00 0.00 0.00 2.17
3850 5877 9.952030 TTTGTCTTTTCCTTAGGTTTTGATTTT 57.048 25.926 0.00 0.00 0.00 1.82
3851 5878 9.594478 TTGTCTTTTCCTTAGGTTTTGATTTTC 57.406 29.630 0.00 0.00 0.00 2.29
3852 5879 8.977412 TGTCTTTTCCTTAGGTTTTGATTTTCT 58.023 29.630 0.00 0.00 0.00 2.52
3853 5880 9.249457 GTCTTTTCCTTAGGTTTTGATTTTCTG 57.751 33.333 0.00 0.00 0.00 3.02
3854 5881 8.977412 TCTTTTCCTTAGGTTTTGATTTTCTGT 58.023 29.630 0.00 0.00 0.00 3.41
3855 5882 9.249457 CTTTTCCTTAGGTTTTGATTTTCTGTC 57.751 33.333 0.00 0.00 0.00 3.51
3856 5883 7.889873 TTCCTTAGGTTTTGATTTTCTGTCA 57.110 32.000 0.00 0.00 0.00 3.58
3857 5884 7.510549 TCCTTAGGTTTTGATTTTCTGTCAG 57.489 36.000 0.00 0.00 0.00 3.51
3858 5885 7.287061 TCCTTAGGTTTTGATTTTCTGTCAGA 58.713 34.615 0.00 0.00 0.00 3.27
3859 5886 7.944554 TCCTTAGGTTTTGATTTTCTGTCAGAT 59.055 33.333 2.68 0.00 0.00 2.90
3860 5887 8.579863 CCTTAGGTTTTGATTTTCTGTCAGATT 58.420 33.333 2.68 0.00 0.00 2.40
3861 5888 9.403110 CTTAGGTTTTGATTTTCTGTCAGATTG 57.597 33.333 2.68 0.00 0.00 2.67
3862 5889 7.587037 AGGTTTTGATTTTCTGTCAGATTGA 57.413 32.000 2.68 0.00 0.00 2.57
3871 5898 3.442996 GTCAGATTGACGAGGTGGG 57.557 57.895 0.00 0.00 37.67 4.61
3872 5899 0.108138 GTCAGATTGACGAGGTGGGG 60.108 60.000 0.00 0.00 37.67 4.96
3873 5900 1.450312 CAGATTGACGAGGTGGGGC 60.450 63.158 0.00 0.00 0.00 5.80
3874 5901 2.124695 GATTGACGAGGTGGGGCC 60.125 66.667 0.00 0.00 37.58 5.80
3875 5902 4.096003 ATTGACGAGGTGGGGCCG 62.096 66.667 0.00 0.00 43.70 6.13
3879 5906 4.371417 ACGAGGTGGGGCCGACTA 62.371 66.667 18.54 0.00 43.70 2.59
3880 5907 2.838225 CGAGGTGGGGCCGACTAT 60.838 66.667 18.54 7.61 43.70 2.12
3881 5908 2.822399 GAGGTGGGGCCGACTATG 59.178 66.667 18.54 0.00 43.70 2.23
3882 5909 2.040606 AGGTGGGGCCGACTATGT 59.959 61.111 18.54 0.00 43.70 2.29
3883 5910 2.029307 GAGGTGGGGCCGACTATGTC 62.029 65.000 18.54 6.85 43.70 3.06
3884 5911 2.363975 GGTGGGGCCGACTATGTCA 61.364 63.158 18.54 0.00 32.09 3.58
3885 5912 1.696097 GGTGGGGCCGACTATGTCAT 61.696 60.000 18.54 0.00 32.09 3.06
3886 5913 0.532862 GTGGGGCCGACTATGTCATG 60.533 60.000 11.87 0.00 32.09 3.07
3887 5914 0.980754 TGGGGCCGACTATGTCATGT 60.981 55.000 0.00 0.00 32.09 3.21
3888 5915 0.180406 GGGGCCGACTATGTCATGTT 59.820 55.000 0.00 0.00 32.09 2.71
3889 5916 1.408266 GGGGCCGACTATGTCATGTTT 60.408 52.381 0.00 0.00 32.09 2.83
3890 5917 1.670811 GGGCCGACTATGTCATGTTTG 59.329 52.381 0.00 0.00 32.09 2.93
3891 5918 2.627945 GGCCGACTATGTCATGTTTGA 58.372 47.619 0.00 0.00 32.09 2.69
3892 5919 3.006940 GGCCGACTATGTCATGTTTGAA 58.993 45.455 0.00 0.00 32.48 2.69
3893 5920 3.627577 GGCCGACTATGTCATGTTTGAAT 59.372 43.478 0.00 0.00 32.48 2.57
3894 5921 4.814234 GGCCGACTATGTCATGTTTGAATA 59.186 41.667 0.00 0.00 32.48 1.75
3895 5922 5.295787 GGCCGACTATGTCATGTTTGAATAA 59.704 40.000 0.00 0.00 32.48 1.40
3896 5923 6.422223 GCCGACTATGTCATGTTTGAATAAG 58.578 40.000 0.00 0.00 32.48 1.73
3897 5924 6.511767 GCCGACTATGTCATGTTTGAATAAGG 60.512 42.308 0.00 0.00 32.48 2.69
3898 5925 6.538742 CCGACTATGTCATGTTTGAATAAGGT 59.461 38.462 0.00 0.00 32.48 3.50
3899 5926 7.254455 CCGACTATGTCATGTTTGAATAAGGTC 60.254 40.741 0.00 0.00 32.48 3.85
3900 5927 7.492669 CGACTATGTCATGTTTGAATAAGGTCT 59.507 37.037 0.00 0.00 32.48 3.85
3901 5928 8.723942 ACTATGTCATGTTTGAATAAGGTCTC 57.276 34.615 0.00 0.00 32.48 3.36
3902 5929 8.543774 ACTATGTCATGTTTGAATAAGGTCTCT 58.456 33.333 0.00 0.00 32.48 3.10
3903 5930 7.856145 ATGTCATGTTTGAATAAGGTCTCTC 57.144 36.000 0.00 0.00 32.48 3.20
3904 5931 6.173339 TGTCATGTTTGAATAAGGTCTCTCC 58.827 40.000 0.00 0.00 32.48 3.71
3905 5932 6.173339 GTCATGTTTGAATAAGGTCTCTCCA 58.827 40.000 0.00 0.00 34.16 3.86
3906 5933 6.314896 GTCATGTTTGAATAAGGTCTCTCCAG 59.685 42.308 0.00 0.00 34.16 3.86
3907 5934 4.579869 TGTTTGAATAAGGTCTCTCCAGC 58.420 43.478 0.00 0.00 39.02 4.85
3908 5935 3.914426 TTGAATAAGGTCTCTCCAGCC 57.086 47.619 0.00 0.00 39.02 4.85
3909 5936 3.121929 TGAATAAGGTCTCTCCAGCCT 57.878 47.619 0.00 0.00 39.02 4.58
3910 5937 3.034635 TGAATAAGGTCTCTCCAGCCTC 58.965 50.000 0.00 0.00 39.02 4.70
3911 5938 3.304829 GAATAAGGTCTCTCCAGCCTCT 58.695 50.000 0.00 0.00 39.02 3.69
3912 5939 2.445682 TAAGGTCTCTCCAGCCTCTC 57.554 55.000 0.00 0.00 39.02 3.20
3913 5940 0.325203 AAGGTCTCTCCAGCCTCTCC 60.325 60.000 0.00 0.00 39.02 3.71
3914 5941 1.760480 GGTCTCTCCAGCCTCTCCC 60.760 68.421 0.00 0.00 35.97 4.30
3915 5942 1.309688 GTCTCTCCAGCCTCTCCCT 59.690 63.158 0.00 0.00 0.00 4.20
3916 5943 0.553819 GTCTCTCCAGCCTCTCCCTA 59.446 60.000 0.00 0.00 0.00 3.53
3917 5944 0.553819 TCTCTCCAGCCTCTCCCTAC 59.446 60.000 0.00 0.00 0.00 3.18
3918 5945 0.469144 CTCTCCAGCCTCTCCCTACC 60.469 65.000 0.00 0.00 0.00 3.18
3919 5946 0.926720 TCTCCAGCCTCTCCCTACCT 60.927 60.000 0.00 0.00 0.00 3.08
3920 5947 0.469144 CTCCAGCCTCTCCCTACCTC 60.469 65.000 0.00 0.00 0.00 3.85
3921 5948 1.830408 CCAGCCTCTCCCTACCTCG 60.830 68.421 0.00 0.00 0.00 4.63
3922 5949 1.227664 CAGCCTCTCCCTACCTCGA 59.772 63.158 0.00 0.00 0.00 4.04
3923 5950 1.104577 CAGCCTCTCCCTACCTCGAC 61.105 65.000 0.00 0.00 0.00 4.20
3924 5951 2.188161 GCCTCTCCCTACCTCGACG 61.188 68.421 0.00 0.00 0.00 5.12
3925 5952 1.525923 CCTCTCCCTACCTCGACGA 59.474 63.158 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.506067 GTGGACCTGAAAAATCGGTTGAT 59.494 43.478 0.00 0.00 35.98 2.57
1 2 2.882137 GTGGACCTGAAAAATCGGTTGA 59.118 45.455 0.00 0.00 0.00 3.18
2 3 2.030274 GGTGGACCTGAAAAATCGGTTG 60.030 50.000 0.00 0.00 0.00 3.77
3 4 2.235891 GGTGGACCTGAAAAATCGGTT 58.764 47.619 0.00 0.00 0.00 4.44
4 5 1.880646 CGGTGGACCTGAAAAATCGGT 60.881 52.381 0.00 0.00 0.00 4.69
5 6 0.802494 CGGTGGACCTGAAAAATCGG 59.198 55.000 0.00 0.00 0.00 4.18
6 7 1.463444 GACGGTGGACCTGAAAAATCG 59.537 52.381 0.00 0.00 0.00 3.34
7 8 1.810755 GGACGGTGGACCTGAAAAATC 59.189 52.381 0.00 0.00 0.00 2.17
8 9 1.880646 CGGACGGTGGACCTGAAAAAT 60.881 52.381 0.00 0.00 0.00 1.82
9 10 0.533308 CGGACGGTGGACCTGAAAAA 60.533 55.000 0.00 0.00 0.00 1.94
10 11 1.070105 CGGACGGTGGACCTGAAAA 59.930 57.895 0.00 0.00 0.00 2.29
11 12 1.189524 ATCGGACGGTGGACCTGAAA 61.190 55.000 0.00 0.00 0.00 2.69
12 13 1.189524 AATCGGACGGTGGACCTGAA 61.190 55.000 0.00 0.00 0.00 3.02
13 14 1.601419 GAATCGGACGGTGGACCTGA 61.601 60.000 0.00 0.00 0.00 3.86
14 15 1.153628 GAATCGGACGGTGGACCTG 60.154 63.158 0.00 0.00 0.00 4.00
15 16 0.033796 TAGAATCGGACGGTGGACCT 60.034 55.000 0.00 0.00 0.00 3.85
16 17 0.384669 CTAGAATCGGACGGTGGACC 59.615 60.000 0.00 0.00 0.00 4.46
17 18 0.384669 CCTAGAATCGGACGGTGGAC 59.615 60.000 0.00 0.00 0.00 4.02
18 19 0.033796 ACCTAGAATCGGACGGTGGA 60.034 55.000 0.00 0.00 0.00 4.02
19 20 0.822164 AACCTAGAATCGGACGGTGG 59.178 55.000 0.00 0.00 0.00 4.61
20 21 1.475280 TGAACCTAGAATCGGACGGTG 59.525 52.381 0.00 0.00 0.00 4.94
21 22 1.749634 CTGAACCTAGAATCGGACGGT 59.250 52.381 0.00 0.00 0.00 4.83
22 23 2.022195 TCTGAACCTAGAATCGGACGG 58.978 52.381 0.00 0.00 0.00 4.79
23 24 2.033550 CCTCTGAACCTAGAATCGGACG 59.966 54.545 0.00 0.00 0.00 4.79
24 25 3.067040 GTCCTCTGAACCTAGAATCGGAC 59.933 52.174 0.00 0.00 34.47 4.79
25 26 3.288964 GTCCTCTGAACCTAGAATCGGA 58.711 50.000 0.00 0.00 0.00 4.55
26 27 3.024547 TGTCCTCTGAACCTAGAATCGG 58.975 50.000 0.00 0.00 0.00 4.18
27 28 3.067461 CCTGTCCTCTGAACCTAGAATCG 59.933 52.174 0.00 0.00 0.00 3.34
28 29 3.386402 CCCTGTCCTCTGAACCTAGAATC 59.614 52.174 0.00 0.00 0.00 2.52
29 30 3.379452 CCCTGTCCTCTGAACCTAGAAT 58.621 50.000 0.00 0.00 0.00 2.40
30 31 2.821437 CCCTGTCCTCTGAACCTAGAA 58.179 52.381 0.00 0.00 0.00 2.10
31 32 1.619977 GCCCTGTCCTCTGAACCTAGA 60.620 57.143 0.00 0.00 0.00 2.43
32 33 0.827368 GCCCTGTCCTCTGAACCTAG 59.173 60.000 0.00 0.00 0.00 3.02
33 34 0.970937 CGCCCTGTCCTCTGAACCTA 60.971 60.000 0.00 0.00 0.00 3.08
34 35 2.286523 CGCCCTGTCCTCTGAACCT 61.287 63.158 0.00 0.00 0.00 3.50
35 36 2.266055 CGCCCTGTCCTCTGAACC 59.734 66.667 0.00 0.00 0.00 3.62
36 37 1.374758 CACGCCCTGTCCTCTGAAC 60.375 63.158 0.00 0.00 0.00 3.18
37 38 1.816863 GACACGCCCTGTCCTCTGAA 61.817 60.000 0.00 0.00 43.35 3.02
38 39 2.203640 ACACGCCCTGTCCTCTGA 60.204 61.111 0.00 0.00 0.00 3.27
39 40 2.262915 GACACGCCCTGTCCTCTG 59.737 66.667 0.00 0.00 43.35 3.35
40 41 3.374402 CGACACGCCCTGTCCTCT 61.374 66.667 4.06 0.00 46.01 3.69
41 42 3.222354 AACGACACGCCCTGTCCTC 62.222 63.158 0.00 0.00 46.01 3.71
42 43 3.222354 GAACGACACGCCCTGTCCT 62.222 63.158 0.00 0.00 46.01 3.85
43 44 2.737376 GAACGACACGCCCTGTCC 60.737 66.667 0.00 0.00 46.01 4.02
44 45 2.737376 GGAACGACACGCCCTGTC 60.737 66.667 0.00 0.00 45.38 3.51
57 58 0.527817 CAGATACCTGTCCGCGGAAC 60.528 60.000 32.93 23.61 35.70 3.62
58 59 0.681887 TCAGATACCTGTCCGCGGAA 60.682 55.000 32.93 15.31 41.16 4.30
59 60 1.077285 TCAGATACCTGTCCGCGGA 60.077 57.895 27.28 27.28 41.16 5.54
60 61 1.065928 GTCAGATACCTGTCCGCGG 59.934 63.158 22.12 22.12 41.16 6.46
61 62 0.029567 GAGTCAGATACCTGTCCGCG 59.970 60.000 0.00 0.00 41.16 6.46
62 63 1.394618 AGAGTCAGATACCTGTCCGC 58.605 55.000 0.00 0.00 41.16 5.54
63 64 2.032302 CGAAGAGTCAGATACCTGTCCG 59.968 54.545 0.00 0.00 41.16 4.79
64 65 3.280295 TCGAAGAGTCAGATACCTGTCC 58.720 50.000 0.00 0.00 41.16 4.02
97 98 2.004583 TTGAGGCCGAACTATGTTCG 57.995 50.000 21.32 21.32 41.21 3.95
98 99 6.688578 TCTATATTGAGGCCGAACTATGTTC 58.311 40.000 0.00 0.77 0.00 3.18
99 100 6.295349 CCTCTATATTGAGGCCGAACTATGTT 60.295 42.308 18.46 0.00 45.84 2.71
100 101 5.186021 CCTCTATATTGAGGCCGAACTATGT 59.814 44.000 18.46 0.00 45.84 2.29
101 102 5.655488 CCTCTATATTGAGGCCGAACTATG 58.345 45.833 18.46 0.00 45.84 2.23
102 103 5.923733 CCTCTATATTGAGGCCGAACTAT 57.076 43.478 18.46 0.00 45.84 2.12
112 113 9.442047 AAACAACAACTCTTCCTCTATATTGAG 57.558 33.333 7.15 7.15 0.00 3.02
113 114 9.793259 AAAACAACAACTCTTCCTCTATATTGA 57.207 29.630 0.00 0.00 0.00 2.57
114 115 9.831737 CAAAACAACAACTCTTCCTCTATATTG 57.168 33.333 0.00 0.00 0.00 1.90
115 116 8.515414 GCAAAACAACAACTCTTCCTCTATATT 58.485 33.333 0.00 0.00 0.00 1.28
116 117 7.885399 AGCAAAACAACAACTCTTCCTCTATAT 59.115 33.333 0.00 0.00 0.00 0.86
117 118 7.224297 AGCAAAACAACAACTCTTCCTCTATA 58.776 34.615 0.00 0.00 0.00 1.31
118 119 6.064717 AGCAAAACAACAACTCTTCCTCTAT 58.935 36.000 0.00 0.00 0.00 1.98
119 120 5.437060 AGCAAAACAACAACTCTTCCTCTA 58.563 37.500 0.00 0.00 0.00 2.43
120 121 4.273318 AGCAAAACAACAACTCTTCCTCT 58.727 39.130 0.00 0.00 0.00 3.69
121 122 4.498177 GGAGCAAAACAACAACTCTTCCTC 60.498 45.833 0.00 0.00 0.00 3.71
122 123 3.381590 GGAGCAAAACAACAACTCTTCCT 59.618 43.478 0.00 0.00 0.00 3.36
123 124 3.381590 AGGAGCAAAACAACAACTCTTCC 59.618 43.478 0.00 0.00 0.00 3.46
124 125 4.336713 AGAGGAGCAAAACAACAACTCTTC 59.663 41.667 0.00 0.00 34.65 2.87
125 126 4.273318 AGAGGAGCAAAACAACAACTCTT 58.727 39.130 0.00 0.00 30.48 2.85
126 127 3.891049 AGAGGAGCAAAACAACAACTCT 58.109 40.909 0.00 0.00 0.00 3.24
127 128 4.816925 AGTAGAGGAGCAAAACAACAACTC 59.183 41.667 0.00 0.00 0.00 3.01
128 129 4.781934 AGTAGAGGAGCAAAACAACAACT 58.218 39.130 0.00 0.00 0.00 3.16
129 130 5.758784 AGTAGTAGAGGAGCAAAACAACAAC 59.241 40.000 0.00 0.00 0.00 3.32
130 131 5.758296 CAGTAGTAGAGGAGCAAAACAACAA 59.242 40.000 0.00 0.00 0.00 2.83
131 132 5.297547 CAGTAGTAGAGGAGCAAAACAACA 58.702 41.667 0.00 0.00 0.00 3.33
132 133 4.152580 GCAGTAGTAGAGGAGCAAAACAAC 59.847 45.833 0.00 0.00 0.00 3.32
133 134 4.040461 AGCAGTAGTAGAGGAGCAAAACAA 59.960 41.667 0.00 0.00 0.00 2.83
134 135 3.578716 AGCAGTAGTAGAGGAGCAAAACA 59.421 43.478 0.00 0.00 0.00 2.83
135 136 4.195225 AGCAGTAGTAGAGGAGCAAAAC 57.805 45.455 0.00 0.00 0.00 2.43
136 137 5.894393 AGATAGCAGTAGTAGAGGAGCAAAA 59.106 40.000 0.00 0.00 0.00 2.44
137 138 5.300539 CAGATAGCAGTAGTAGAGGAGCAAA 59.699 44.000 0.00 0.00 0.00 3.68
138 139 4.824537 CAGATAGCAGTAGTAGAGGAGCAA 59.175 45.833 0.00 0.00 0.00 3.91
139 140 4.103311 TCAGATAGCAGTAGTAGAGGAGCA 59.897 45.833 0.00 0.00 0.00 4.26
140 141 4.647611 TCAGATAGCAGTAGTAGAGGAGC 58.352 47.826 0.00 0.00 0.00 4.70
141 142 5.647658 CCATCAGATAGCAGTAGTAGAGGAG 59.352 48.000 0.00 0.00 0.00 3.69
142 143 5.515710 CCCATCAGATAGCAGTAGTAGAGGA 60.516 48.000 0.00 0.00 0.00 3.71
143 144 4.704540 CCCATCAGATAGCAGTAGTAGAGG 59.295 50.000 0.00 0.00 0.00 3.69
144 145 5.182950 CACCCATCAGATAGCAGTAGTAGAG 59.817 48.000 0.00 0.00 0.00 2.43
145 146 5.073428 CACCCATCAGATAGCAGTAGTAGA 58.927 45.833 0.00 0.00 0.00 2.59
146 147 5.073428 TCACCCATCAGATAGCAGTAGTAG 58.927 45.833 0.00 0.00 0.00 2.57
147 148 5.061721 TCACCCATCAGATAGCAGTAGTA 57.938 43.478 0.00 0.00 0.00 1.82
148 149 3.916035 TCACCCATCAGATAGCAGTAGT 58.084 45.455 0.00 0.00 0.00 2.73
149 150 4.380339 CGATCACCCATCAGATAGCAGTAG 60.380 50.000 0.00 0.00 0.00 2.57
150 151 3.507622 CGATCACCCATCAGATAGCAGTA 59.492 47.826 0.00 0.00 0.00 2.74
151 152 2.298446 CGATCACCCATCAGATAGCAGT 59.702 50.000 0.00 0.00 0.00 4.40
152 153 2.353505 CCGATCACCCATCAGATAGCAG 60.354 54.545 0.00 0.00 0.00 4.24
153 154 1.620323 CCGATCACCCATCAGATAGCA 59.380 52.381 0.00 0.00 0.00 3.49
154 155 1.674221 GCCGATCACCCATCAGATAGC 60.674 57.143 0.00 0.00 0.00 2.97
155 156 1.403382 CGCCGATCACCCATCAGATAG 60.403 57.143 0.00 0.00 0.00 2.08
156 157 0.603065 CGCCGATCACCCATCAGATA 59.397 55.000 0.00 0.00 0.00 1.98
157 158 1.368950 CGCCGATCACCCATCAGAT 59.631 57.895 0.00 0.00 0.00 2.90
158 159 2.796193 CCGCCGATCACCCATCAGA 61.796 63.158 0.00 0.00 0.00 3.27
159 160 2.280389 CCGCCGATCACCCATCAG 60.280 66.667 0.00 0.00 0.00 2.90
160 161 3.860605 CCCGCCGATCACCCATCA 61.861 66.667 0.00 0.00 0.00 3.07
161 162 4.626081 CCCCGCCGATCACCCATC 62.626 72.222 0.00 0.00 0.00 3.51
165 166 2.836360 TACTCCCCGCCGATCACC 60.836 66.667 0.00 0.00 0.00 4.02
166 167 2.416260 GTACTCCCCGCCGATCAC 59.584 66.667 0.00 0.00 0.00 3.06
167 168 3.214123 CGTACTCCCCGCCGATCA 61.214 66.667 0.00 0.00 0.00 2.92
168 169 3.974757 CCGTACTCCCCGCCGATC 61.975 72.222 0.00 0.00 0.00 3.69
172 173 3.159347 ATTCCCGTACTCCCCGCC 61.159 66.667 0.00 0.00 0.00 6.13
173 174 2.108362 CATTCCCGTACTCCCCGC 59.892 66.667 0.00 0.00 0.00 6.13
174 175 1.440476 GACATTCCCGTACTCCCCG 59.560 63.158 0.00 0.00 0.00 5.73
175 176 0.690077 AGGACATTCCCGTACTCCCC 60.690 60.000 0.00 0.00 37.19 4.81
176 177 0.751452 GAGGACATTCCCGTACTCCC 59.249 60.000 0.00 0.00 40.48 4.30
177 178 0.384669 CGAGGACATTCCCGTACTCC 59.615 60.000 0.00 0.00 42.99 3.85
178 179 0.248949 GCGAGGACATTCCCGTACTC 60.249 60.000 0.00 0.00 42.57 2.59
179 180 0.968901 TGCGAGGACATTCCCGTACT 60.969 55.000 0.00 0.00 37.19 2.73
180 181 0.104304 ATGCGAGGACATTCCCGTAC 59.896 55.000 0.00 0.00 37.19 3.67
181 182 0.387929 GATGCGAGGACATTCCCGTA 59.612 55.000 0.00 2.10 37.19 4.02
182 183 1.144057 GATGCGAGGACATTCCCGT 59.856 57.895 0.00 0.00 37.19 5.28
183 184 0.598680 GAGATGCGAGGACATTCCCG 60.599 60.000 0.00 0.00 37.19 5.14
184 185 0.598680 CGAGATGCGAGGACATTCCC 60.599 60.000 0.00 0.00 44.57 3.97
185 186 0.385751 TCGAGATGCGAGGACATTCC 59.614 55.000 0.00 0.00 45.59 3.01
186 187 3.946950 TCGAGATGCGAGGACATTC 57.053 52.632 0.00 0.00 45.59 2.67
195 196 1.595382 GGGGGACATTCGAGATGCG 60.595 63.158 7.28 0.00 42.69 4.73
196 197 1.595382 CGGGGGACATTCGAGATGC 60.595 63.158 7.28 0.00 0.00 3.91
197 198 0.681733 ATCGGGGGACATTCGAGATG 59.318 55.000 6.18 6.18 36.34 2.90
198 199 0.969894 GATCGGGGGACATTCGAGAT 59.030 55.000 0.00 0.00 36.34 2.75
199 200 0.396556 TGATCGGGGGACATTCGAGA 60.397 55.000 0.00 0.00 36.34 4.04
200 201 0.464036 TTGATCGGGGGACATTCGAG 59.536 55.000 0.00 0.00 36.34 4.04
201 202 0.177141 GTTGATCGGGGGACATTCGA 59.823 55.000 0.00 0.00 37.33 3.71
202 203 0.107897 TGTTGATCGGGGGACATTCG 60.108 55.000 0.00 0.00 0.00 3.34
221 222 2.325082 GCCGAAGTCGTTGTGGCAT 61.325 57.895 0.00 0.00 45.06 4.40
222 223 2.970324 GCCGAAGTCGTTGTGGCA 60.970 61.111 0.00 0.00 45.06 4.92
230 231 2.087009 GTTGACGGAGCCGAAGTCG 61.087 63.158 16.83 0.00 42.83 4.18
244 245 1.264749 ATAGCTCCGCCAGTGGTTGA 61.265 55.000 11.74 6.81 0.00 3.18
246 247 1.221840 CATAGCTCCGCCAGTGGTT 59.778 57.895 11.74 0.00 0.00 3.67
251 252 1.091771 CCACAACATAGCTCCGCCAG 61.092 60.000 0.00 0.00 0.00 4.85
273 274 1.686800 GGTGAGCCATGGCCCATTT 60.687 57.895 33.14 14.76 43.17 2.32
289 290 5.549742 TTGCTGAAATTGAAAATCTGGGT 57.450 34.783 0.00 0.00 0.00 4.51
337 339 3.806625 AGCATTGTGTATTTCATGGGC 57.193 42.857 0.00 0.00 0.00 5.36
346 348 2.684881 GCTGCCTTGTAGCATTGTGTAT 59.315 45.455 0.00 0.00 43.09 2.29
347 349 2.083774 GCTGCCTTGTAGCATTGTGTA 58.916 47.619 0.00 0.00 43.09 2.90
348 350 0.883833 GCTGCCTTGTAGCATTGTGT 59.116 50.000 0.00 0.00 43.09 3.72
349 351 0.883153 TGCTGCCTTGTAGCATTGTG 59.117 50.000 2.64 0.00 45.44 3.33
350 352 3.344703 TGCTGCCTTGTAGCATTGT 57.655 47.368 2.64 0.00 45.44 2.71
355 357 1.066143 TCTAGGTTGCTGCCTTGTAGC 60.066 52.381 5.03 0.00 41.49 3.58
366 368 4.939509 TTTGACGCTAAATCTAGGTTGC 57.060 40.909 0.00 0.00 0.00 4.17
394 396 2.282180 GAAAACTGGGCGGGCTGA 60.282 61.111 0.00 0.00 0.00 4.26
396 398 2.282462 CAGAAAACTGGGCGGGCT 60.282 61.111 0.26 0.00 0.00 5.19
399 401 1.318576 AGAAACAGAAAACTGGGCGG 58.681 50.000 0.00 0.00 0.00 6.13
400 402 2.095718 GCTAGAAACAGAAAACTGGGCG 60.096 50.000 0.00 0.00 0.00 6.13
480 482 6.646653 TCATCTTCGGATTTGAGGAAATATCG 59.353 38.462 0.00 0.00 31.58 2.92
482 484 7.282585 TGTCATCTTCGGATTTGAGGAAATAT 58.717 34.615 0.00 0.00 31.58 1.28
511 513 3.376438 GCAATTGCCATCGTTGCG 58.624 55.556 20.06 0.00 38.83 4.85
514 516 4.423732 GAATAACTGCAATTGCCATCGTT 58.576 39.130 26.94 22.97 41.18 3.85
515 517 3.181487 GGAATAACTGCAATTGCCATCGT 60.181 43.478 26.94 15.40 41.18 3.73
697 699 7.494625 TCGGCTTATTTACAGATTTGTCCTTAG 59.505 37.037 0.00 0.00 38.76 2.18
699 701 6.177610 TCGGCTTATTTACAGATTTGTCCTT 58.822 36.000 0.00 0.00 38.76 3.36
812 838 9.358872 GTTCACTTTGATTTATCCCATCTTTTC 57.641 33.333 0.00 0.00 0.00 2.29
816 842 9.927081 AATAGTTCACTTTGATTTATCCCATCT 57.073 29.630 0.00 0.00 0.00 2.90
996 1030 5.417580 AGCTATTCGGATTAGAGACATCTCC 59.582 44.000 10.32 0.00 43.88 3.71
1279 1313 5.105351 GCCTGGTAAGCAATTAAAACCTCAT 60.105 40.000 0.00 0.00 0.00 2.90
1285 1319 4.557695 CGTGTGCCTGGTAAGCAATTAAAA 60.558 41.667 0.00 0.00 43.02 1.52
1286 1320 3.057876 CGTGTGCCTGGTAAGCAATTAAA 60.058 43.478 0.00 0.00 43.02 1.52
1299 1333 0.591170 CCTTGGTAAACGTGTGCCTG 59.409 55.000 14.44 6.90 0.00 4.85
1320 1354 1.933853 CACGACATCCGGATCCTTTTC 59.066 52.381 15.88 5.29 43.93 2.29
1369 1403 1.406898 GGGCCTAATTCAAGCTTCTGC 59.593 52.381 0.84 0.00 40.05 4.26
1554 1588 3.923017 AACAGCACATTTAAGACAGCC 57.077 42.857 0.00 0.00 0.00 4.85
1561 1595 6.014584 TCTGGAGAGAGTAACAGCACATTTAA 60.015 38.462 0.00 0.00 0.00 1.52
1592 1626 7.858382 CCAACATCGTGAACATAAACTAAACAA 59.142 33.333 0.00 0.00 0.00 2.83
1748 1783 3.270877 AGCCAACTAACGCCTAAATCTG 58.729 45.455 0.00 0.00 0.00 2.90
1815 1854 8.454106 CAAATATGCTGGTATTATTCTACTGCC 58.546 37.037 0.00 0.00 0.00 4.85
1843 1882 4.691216 CCCAACTGCAGTACTTTCTAAGAC 59.309 45.833 22.01 0.00 0.00 3.01
1850 1889 3.508845 ACATCCCAACTGCAGTACTTT 57.491 42.857 22.01 0.19 0.00 2.66
1853 1892 5.183140 ACAAATTACATCCCAACTGCAGTAC 59.817 40.000 22.01 0.00 0.00 2.73
1984 2026 9.524106 AATGACAGACGACATATAAAACGATAA 57.476 29.630 0.00 0.00 0.00 1.75
1988 2030 8.556517 TCTAATGACAGACGACATATAAAACG 57.443 34.615 0.00 0.00 0.00 3.60
2139 2182 2.453521 ACACGAACATCCTACCTAGCA 58.546 47.619 0.00 0.00 0.00 3.49
2488 2532 4.338682 ACGCATACAGTACCTAGAAGAAGG 59.661 45.833 0.00 0.00 42.82 3.46
2512 2556 9.614792 ATTGAGGTCTTTAAATATTCGCTTAGT 57.385 29.630 0.00 0.00 0.00 2.24
2542 2586 6.710744 AGATCAAGTTCAACAACGTAAGGATT 59.289 34.615 0.00 0.00 46.39 3.01
2660 2704 1.147824 CTCGGCCATCCTCTGCATT 59.852 57.895 2.24 0.00 0.00 3.56
2680 2724 5.799213 AGGTCTAGAAGAACACCTTGAATG 58.201 41.667 0.00 0.00 35.61 2.67
2908 2952 1.200948 TCATCACTGCGACTGACTCTG 59.799 52.381 0.00 0.00 0.00 3.35
2933 2977 2.322999 GGCAATACCAAGCTTCGGCG 62.323 60.000 0.00 0.00 41.89 6.46
2951 2995 6.568869 TGTTAGACATTTCACAAGTTTTGGG 58.431 36.000 0.00 0.00 34.65 4.12
2992 3036 4.019231 AGAGTGTTAAGGTTCCATTCCTCC 60.019 45.833 0.00 0.00 33.76 4.30
3008 3053 8.598041 ACTCTGTTCATATTCCTAAAGAGTGTT 58.402 33.333 0.00 0.00 41.08 3.32
3196 3241 5.048782 GCTGAAACCAAGTCATGTGATACAA 60.049 40.000 0.00 0.00 0.00 2.41
3204 3249 2.886523 TGAAGGCTGAAACCAAGTCATG 59.113 45.455 0.00 0.00 0.00 3.07
3282 3333 2.799412 GCTGCAAAGATACTCGGATCTG 59.201 50.000 0.00 0.00 36.28 2.90
3316 3367 2.496470 GGACCAGGACTCGTATCTTTGT 59.504 50.000 0.00 0.00 0.00 2.83
3441 3492 1.221021 GACCGATTCGCTTCCCCTT 59.779 57.895 0.00 0.00 0.00 3.95
3493 3544 3.018856 CTGGCAATCTTGGTCTGCATAA 58.981 45.455 0.00 0.00 37.83 1.90
3544 5540 2.731976 GTCTCAACCTAAACGCTGAGTG 59.268 50.000 0.00 0.00 37.25 3.51
3555 5551 1.207089 CGCCATGGAAGTCTCAACCTA 59.793 52.381 18.40 0.00 0.00 3.08
3568 5564 2.409870 GGCTTGTTCTCCGCCATGG 61.410 63.158 7.63 7.63 43.25 3.66
3621 5617 5.653769 ACATGTTCTTCCCATTACCAATCTG 59.346 40.000 0.00 0.00 0.00 2.90
3667 5694 0.880278 ATGATTTCGGGTCGATGGCG 60.880 55.000 0.00 0.00 35.23 5.69
3672 5699 0.742990 GGCACATGATTTCGGGTCGA 60.743 55.000 0.00 0.00 0.00 4.20
3678 5705 1.167851 AGTGGTGGCACATGATTTCG 58.832 50.000 20.82 0.00 44.52 3.46
3688 5715 3.702048 GCGGAGGTAGTGGTGGCA 61.702 66.667 0.00 0.00 0.00 4.92
3689 5716 4.468689 GGCGGAGGTAGTGGTGGC 62.469 72.222 0.00 0.00 0.00 5.01
3692 5719 2.119832 AGTGGCGGAGGTAGTGGT 59.880 61.111 0.00 0.00 0.00 4.16
3699 5726 3.925630 ATGTTGGCAGTGGCGGAGG 62.926 63.158 12.58 0.00 42.47 4.30
3700 5727 2.360350 ATGTTGGCAGTGGCGGAG 60.360 61.111 12.58 0.00 42.47 4.63
3701 5728 2.359850 GATGTTGGCAGTGGCGGA 60.360 61.111 12.58 0.00 42.47 5.54
3702 5729 2.360350 AGATGTTGGCAGTGGCGG 60.360 61.111 12.58 0.00 42.47 6.13
3703 5730 2.743752 CGAGATGTTGGCAGTGGCG 61.744 63.158 12.58 0.00 42.47 5.69
3704 5731 2.401766 CCGAGATGTTGGCAGTGGC 61.402 63.158 10.30 10.30 40.13 5.01
3705 5732 0.249120 TACCGAGATGTTGGCAGTGG 59.751 55.000 0.00 0.00 0.00 4.00
3706 5733 2.159043 AGATACCGAGATGTTGGCAGTG 60.159 50.000 0.00 0.00 0.00 3.66
3707 5734 2.101582 GAGATACCGAGATGTTGGCAGT 59.898 50.000 0.00 0.00 0.00 4.40
3708 5735 2.101415 TGAGATACCGAGATGTTGGCAG 59.899 50.000 0.00 0.00 0.00 4.85
3709 5736 2.107366 TGAGATACCGAGATGTTGGCA 58.893 47.619 0.00 0.00 0.00 4.92
3710 5737 2.159099 TGTGAGATACCGAGATGTTGGC 60.159 50.000 0.00 0.00 0.00 4.52
3711 5738 3.491619 CCTGTGAGATACCGAGATGTTGG 60.492 52.174 0.00 0.00 0.00 3.77
3712 5739 3.381590 TCCTGTGAGATACCGAGATGTTG 59.618 47.826 0.00 0.00 0.00 3.33
3713 5740 3.632333 TCCTGTGAGATACCGAGATGTT 58.368 45.455 0.00 0.00 0.00 2.71
3714 5741 3.218453 CTCCTGTGAGATACCGAGATGT 58.782 50.000 0.00 0.00 41.42 3.06
3715 5742 3.218453 ACTCCTGTGAGATACCGAGATG 58.782 50.000 0.00 0.00 41.42 2.90
3716 5743 3.586470 ACTCCTGTGAGATACCGAGAT 57.414 47.619 0.00 0.00 41.42 2.75
3717 5744 4.197750 GTTACTCCTGTGAGATACCGAGA 58.802 47.826 0.00 0.00 41.42 4.04
3718 5745 3.002451 CGTTACTCCTGTGAGATACCGAG 59.998 52.174 0.00 0.00 41.42 4.63
3719 5746 2.941064 CGTTACTCCTGTGAGATACCGA 59.059 50.000 0.00 0.00 41.42 4.69
3720 5747 2.681848 ACGTTACTCCTGTGAGATACCG 59.318 50.000 0.00 0.00 41.42 4.02
3721 5748 3.242673 CGACGTTACTCCTGTGAGATACC 60.243 52.174 0.00 0.00 41.42 2.73
3722 5749 3.373439 ACGACGTTACTCCTGTGAGATAC 59.627 47.826 0.00 0.00 41.42 2.24
3723 5750 3.603532 ACGACGTTACTCCTGTGAGATA 58.396 45.455 0.00 0.00 41.42 1.98
3724 5751 2.434428 ACGACGTTACTCCTGTGAGAT 58.566 47.619 0.00 0.00 41.42 2.75
3725 5752 1.888215 ACGACGTTACTCCTGTGAGA 58.112 50.000 0.00 0.00 41.42 3.27
3726 5753 2.701073 AACGACGTTACTCCTGTGAG 57.299 50.000 12.39 0.00 44.62 3.51
3727 5754 2.287788 GGAAACGACGTTACTCCTGTGA 60.288 50.000 19.63 0.00 0.00 3.58
3728 5755 2.056577 GGAAACGACGTTACTCCTGTG 58.943 52.381 19.63 0.00 0.00 3.66
3729 5756 1.682854 TGGAAACGACGTTACTCCTGT 59.317 47.619 24.59 5.88 0.00 4.00
3730 5757 2.427232 TGGAAACGACGTTACTCCTG 57.573 50.000 24.59 0.00 0.00 3.86
3731 5758 2.747436 GTTGGAAACGACGTTACTCCT 58.253 47.619 24.59 7.20 36.92 3.69
3743 5770 2.010544 GCGGTAGCTAGGGTTGGAAAC 61.011 57.143 0.00 0.00 43.12 2.78
3744 5771 0.251073 GCGGTAGCTAGGGTTGGAAA 59.749 55.000 0.00 0.00 41.01 3.13
3745 5772 1.619807 GGCGGTAGCTAGGGTTGGAA 61.620 60.000 0.00 0.00 44.37 3.53
3746 5773 2.062177 GGCGGTAGCTAGGGTTGGA 61.062 63.158 0.00 0.00 44.37 3.53
3747 5774 2.363975 TGGCGGTAGCTAGGGTTGG 61.364 63.158 0.00 0.00 44.37 3.77
3748 5775 1.153429 GTGGCGGTAGCTAGGGTTG 60.153 63.158 0.00 0.00 44.37 3.77
3749 5776 2.364780 GGTGGCGGTAGCTAGGGTT 61.365 63.158 0.00 0.00 44.37 4.11
3750 5777 1.941403 TAGGTGGCGGTAGCTAGGGT 61.941 60.000 0.00 0.00 44.37 4.34
3751 5778 1.152610 TAGGTGGCGGTAGCTAGGG 60.153 63.158 0.00 0.00 44.37 3.53
3752 5779 0.178998 TCTAGGTGGCGGTAGCTAGG 60.179 60.000 15.76 0.00 44.73 3.02
3753 5780 1.813786 GATCTAGGTGGCGGTAGCTAG 59.186 57.143 11.85 11.85 45.54 3.42
3754 5781 1.424302 AGATCTAGGTGGCGGTAGCTA 59.576 52.381 0.00 0.00 44.37 3.32
3755 5782 0.186386 AGATCTAGGTGGCGGTAGCT 59.814 55.000 0.00 0.00 44.37 3.32
3756 5783 1.000052 GAAGATCTAGGTGGCGGTAGC 60.000 57.143 0.00 0.00 44.18 3.58
3757 5784 2.554893 GAGAAGATCTAGGTGGCGGTAG 59.445 54.545 0.00 0.00 0.00 3.18
3758 5785 2.175069 AGAGAAGATCTAGGTGGCGGTA 59.825 50.000 0.00 0.00 36.10 4.02
3759 5786 1.063567 AGAGAAGATCTAGGTGGCGGT 60.064 52.381 0.00 0.00 36.10 5.68
3760 5787 1.611491 GAGAGAAGATCTAGGTGGCGG 59.389 57.143 0.00 0.00 38.84 6.13
3761 5788 1.611491 GGAGAGAAGATCTAGGTGGCG 59.389 57.143 0.00 0.00 38.84 5.69
3762 5789 2.890945 GAGGAGAGAAGATCTAGGTGGC 59.109 54.545 0.00 0.00 38.84 5.01
3763 5790 3.496331 GGAGGAGAGAAGATCTAGGTGG 58.504 54.545 0.00 0.00 38.84 4.61
3764 5791 3.496331 GGGAGGAGAGAAGATCTAGGTG 58.504 54.545 0.00 0.00 38.84 4.00
3765 5792 2.449345 GGGGAGGAGAGAAGATCTAGGT 59.551 54.545 0.00 0.00 38.84 3.08
3766 5793 2.225267 GGGGGAGGAGAGAAGATCTAGG 60.225 59.091 0.00 0.00 38.84 3.02
3767 5794 2.721906 AGGGGGAGGAGAGAAGATCTAG 59.278 54.545 0.00 0.00 38.84 2.43
3768 5795 2.719705 GAGGGGGAGGAGAGAAGATCTA 59.280 54.545 0.00 0.00 38.84 1.98
3769 5796 1.503347 GAGGGGGAGGAGAGAAGATCT 59.497 57.143 0.00 0.00 42.61 2.75
3770 5797 1.482365 GGAGGGGGAGGAGAGAAGATC 60.482 61.905 0.00 0.00 0.00 2.75
3771 5798 0.565674 GGAGGGGGAGGAGAGAAGAT 59.434 60.000 0.00 0.00 0.00 2.40
3772 5799 1.595058 GGGAGGGGGAGGAGAGAAGA 61.595 65.000 0.00 0.00 0.00 2.87
3773 5800 1.074850 GGGAGGGGGAGGAGAGAAG 60.075 68.421 0.00 0.00 0.00 2.85
3774 5801 1.550374 AGGGAGGGGGAGGAGAGAA 60.550 63.158 0.00 0.00 0.00 2.87
3775 5802 2.015726 GAGGGAGGGGGAGGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
3776 5803 2.018086 AGAGGGAGGGGGAGGAGAG 61.018 68.421 0.00 0.00 0.00 3.20
3777 5804 2.015726 GAGAGGGAGGGGGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
3778 5805 2.612251 GAGAGGGAGGGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
3779 5806 3.430497 CGAGAGGGAGGGGGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
3791 5818 4.803426 GTCACGCCAGGCCGAGAG 62.803 72.222 5.63 0.00 0.00 3.20
3796 5823 4.803426 CTCTCGTCACGCCAGGCC 62.803 72.222 5.63 0.00 0.00 5.19
3798 5825 4.803426 GGCTCTCGTCACGCCAGG 62.803 72.222 0.00 0.00 43.25 4.45
3799 5826 3.753434 AGGCTCTCGTCACGCCAG 61.753 66.667 0.00 0.00 46.14 4.85
3800 5827 4.056125 CAGGCTCTCGTCACGCCA 62.056 66.667 0.00 0.00 46.14 5.69
3803 5830 4.803426 GGGCAGGCTCTCGTCACG 62.803 72.222 0.00 0.00 0.00 4.35
3804 5831 2.456287 AAAGGGCAGGCTCTCGTCAC 62.456 60.000 0.00 0.00 0.00 3.67
3805 5832 1.768684 AAAAGGGCAGGCTCTCGTCA 61.769 55.000 0.00 0.00 0.00 4.35
3806 5833 0.606673 AAAAAGGGCAGGCTCTCGTC 60.607 55.000 0.00 0.00 0.00 4.20
3807 5834 1.456287 AAAAAGGGCAGGCTCTCGT 59.544 52.632 0.00 0.00 0.00 4.18
3808 5835 4.404691 AAAAAGGGCAGGCTCTCG 57.595 55.556 0.00 0.00 0.00 4.04
3822 5849 9.952030 AATCAAAACCTAAGGAAAAGACAAAAA 57.048 25.926 0.00 0.00 0.00 1.94
3823 5850 9.952030 AAATCAAAACCTAAGGAAAAGACAAAA 57.048 25.926 0.00 0.00 0.00 2.44
3824 5851 9.952030 AAAATCAAAACCTAAGGAAAAGACAAA 57.048 25.926 0.00 0.00 0.00 2.83
3825 5852 9.594478 GAAAATCAAAACCTAAGGAAAAGACAA 57.406 29.630 0.00 0.00 0.00 3.18
3826 5853 8.977412 AGAAAATCAAAACCTAAGGAAAAGACA 58.023 29.630 0.00 0.00 0.00 3.41
3827 5854 9.249457 CAGAAAATCAAAACCTAAGGAAAAGAC 57.751 33.333 0.00 0.00 0.00 3.01
3828 5855 8.977412 ACAGAAAATCAAAACCTAAGGAAAAGA 58.023 29.630 0.00 0.00 0.00 2.52
3829 5856 9.249457 GACAGAAAATCAAAACCTAAGGAAAAG 57.751 33.333 0.00 0.00 0.00 2.27
3830 5857 8.754080 TGACAGAAAATCAAAACCTAAGGAAAA 58.246 29.630 0.00 0.00 0.00 2.29
3831 5858 8.299990 TGACAGAAAATCAAAACCTAAGGAAA 57.700 30.769 0.00 0.00 0.00 3.13
3832 5859 7.777910 TCTGACAGAAAATCAAAACCTAAGGAA 59.222 33.333 1.64 0.00 0.00 3.36
3833 5860 7.287061 TCTGACAGAAAATCAAAACCTAAGGA 58.713 34.615 1.64 0.00 0.00 3.36
3834 5861 7.510549 TCTGACAGAAAATCAAAACCTAAGG 57.489 36.000 1.64 0.00 0.00 2.69
3835 5862 9.403110 CAATCTGACAGAAAATCAAAACCTAAG 57.597 33.333 9.70 0.00 0.00 2.18
3836 5863 9.130661 TCAATCTGACAGAAAATCAAAACCTAA 57.869 29.630 9.70 0.00 0.00 2.69
3837 5864 8.567948 GTCAATCTGACAGAAAATCAAAACCTA 58.432 33.333 9.70 0.00 46.22 3.08
3838 5865 7.428826 GTCAATCTGACAGAAAATCAAAACCT 58.571 34.615 9.70 0.00 46.22 3.50
3839 5866 7.629027 GTCAATCTGACAGAAAATCAAAACC 57.371 36.000 9.70 0.00 46.22 3.27
3853 5880 0.108138 CCCCACCTCGTCAATCTGAC 60.108 60.000 0.00 0.00 43.65 3.51
3854 5881 1.899437 GCCCCACCTCGTCAATCTGA 61.899 60.000 0.00 0.00 0.00 3.27
3855 5882 1.450312 GCCCCACCTCGTCAATCTG 60.450 63.158 0.00 0.00 0.00 2.90
3856 5883 2.670148 GGCCCCACCTCGTCAATCT 61.670 63.158 0.00 0.00 34.51 2.40
3857 5884 2.124695 GGCCCCACCTCGTCAATC 60.125 66.667 0.00 0.00 34.51 2.67
3858 5885 4.096003 CGGCCCCACCTCGTCAAT 62.096 66.667 0.00 0.00 35.61 2.57
3862 5889 3.674050 ATAGTCGGCCCCACCTCGT 62.674 63.158 0.00 0.00 35.61 4.18
3863 5890 2.838225 ATAGTCGGCCCCACCTCG 60.838 66.667 0.00 0.00 35.61 4.63
3864 5891 2.029307 GACATAGTCGGCCCCACCTC 62.029 65.000 0.00 0.00 35.61 3.85
3865 5892 2.040606 ACATAGTCGGCCCCACCT 59.959 61.111 0.00 0.00 35.61 4.00
3866 5893 1.696097 ATGACATAGTCGGCCCCACC 61.696 60.000 0.00 0.00 34.95 4.61
3867 5894 0.532862 CATGACATAGTCGGCCCCAC 60.533 60.000 0.00 0.00 34.95 4.61
3868 5895 0.980754 ACATGACATAGTCGGCCCCA 60.981 55.000 0.00 0.00 34.95 4.96
3869 5896 0.180406 AACATGACATAGTCGGCCCC 59.820 55.000 0.00 0.00 34.95 5.80
3870 5897 1.670811 CAAACATGACATAGTCGGCCC 59.329 52.381 0.00 0.00 34.95 5.80
3871 5898 2.627945 TCAAACATGACATAGTCGGCC 58.372 47.619 0.00 0.00 34.95 6.13
3872 5899 4.882671 ATTCAAACATGACATAGTCGGC 57.117 40.909 0.00 0.00 34.95 5.54
3873 5900 6.538742 ACCTTATTCAAACATGACATAGTCGG 59.461 38.462 0.00 0.00 34.95 4.79
3874 5901 7.492669 AGACCTTATTCAAACATGACATAGTCG 59.507 37.037 0.00 0.00 34.95 4.18
3875 5902 8.723942 AGACCTTATTCAAACATGACATAGTC 57.276 34.615 0.00 0.00 0.00 2.59
3876 5903 8.543774 AGAGACCTTATTCAAACATGACATAGT 58.456 33.333 0.00 0.00 0.00 2.12
3877 5904 8.954950 AGAGACCTTATTCAAACATGACATAG 57.045 34.615 0.00 0.00 0.00 2.23
3878 5905 7.987458 GGAGAGACCTTATTCAAACATGACATA 59.013 37.037 0.00 0.00 35.41 2.29
3879 5906 6.825721 GGAGAGACCTTATTCAAACATGACAT 59.174 38.462 0.00 0.00 35.41 3.06
3880 5907 6.173339 GGAGAGACCTTATTCAAACATGACA 58.827 40.000 0.00 0.00 35.41 3.58
3881 5908 6.173339 TGGAGAGACCTTATTCAAACATGAC 58.827 40.000 0.00 0.00 39.86 3.06
3882 5909 6.373005 TGGAGAGACCTTATTCAAACATGA 57.627 37.500 0.00 0.00 39.86 3.07
3883 5910 5.065731 GCTGGAGAGACCTTATTCAAACATG 59.934 44.000 0.00 0.00 39.86 3.21
3884 5911 5.189180 GCTGGAGAGACCTTATTCAAACAT 58.811 41.667 0.00 0.00 39.86 2.71
3885 5912 4.565652 GGCTGGAGAGACCTTATTCAAACA 60.566 45.833 0.00 0.00 39.86 2.83
3886 5913 3.942115 GGCTGGAGAGACCTTATTCAAAC 59.058 47.826 0.00 0.00 39.86 2.93
3887 5914 3.846588 AGGCTGGAGAGACCTTATTCAAA 59.153 43.478 0.00 0.00 39.86 2.69
3888 5915 3.452627 GAGGCTGGAGAGACCTTATTCAA 59.547 47.826 0.00 0.00 39.86 2.69
3889 5916 3.034635 GAGGCTGGAGAGACCTTATTCA 58.965 50.000 0.00 0.00 39.86 2.57
3890 5917 3.304829 AGAGGCTGGAGAGACCTTATTC 58.695 50.000 0.00 0.00 39.86 1.75
3891 5918 3.304829 GAGAGGCTGGAGAGACCTTATT 58.695 50.000 0.00 0.00 39.86 1.40
3892 5919 2.425683 GGAGAGGCTGGAGAGACCTTAT 60.426 54.545 0.00 0.00 39.86 1.73
3893 5920 1.063567 GGAGAGGCTGGAGAGACCTTA 60.064 57.143 0.00 0.00 39.86 2.69
3894 5921 0.325203 GGAGAGGCTGGAGAGACCTT 60.325 60.000 0.00 0.00 39.86 3.50
3895 5922 1.309688 GGAGAGGCTGGAGAGACCT 59.690 63.158 0.00 0.00 39.86 3.85
3896 5923 1.760480 GGGAGAGGCTGGAGAGACC 60.760 68.421 0.00 0.00 39.54 3.85
3897 5924 0.553819 TAGGGAGAGGCTGGAGAGAC 59.446 60.000 0.00 0.00 0.00 3.36
3898 5925 0.553819 GTAGGGAGAGGCTGGAGAGA 59.446 60.000 0.00 0.00 0.00 3.10
3899 5926 0.469144 GGTAGGGAGAGGCTGGAGAG 60.469 65.000 0.00 0.00 0.00 3.20
3900 5927 0.926720 AGGTAGGGAGAGGCTGGAGA 60.927 60.000 0.00 0.00 0.00 3.71
3901 5928 0.469144 GAGGTAGGGAGAGGCTGGAG 60.469 65.000 0.00 0.00 0.00 3.86
3902 5929 1.621377 GAGGTAGGGAGAGGCTGGA 59.379 63.158 0.00 0.00 0.00 3.86
3903 5930 1.830408 CGAGGTAGGGAGAGGCTGG 60.830 68.421 0.00 0.00 0.00 4.85
3904 5931 1.104577 GTCGAGGTAGGGAGAGGCTG 61.105 65.000 0.00 0.00 0.00 4.85
3905 5932 1.227946 GTCGAGGTAGGGAGAGGCT 59.772 63.158 0.00 0.00 0.00 4.58
3906 5933 2.188161 CGTCGAGGTAGGGAGAGGC 61.188 68.421 0.00 0.00 0.00 4.70
3907 5934 1.525923 TCGTCGAGGTAGGGAGAGG 59.474 63.158 4.85 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.