Multiple sequence alignment - TraesCS6A01G239000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G239000 chr6A 100.000 2546 0 0 1 2546 448652220 448649675 0.000000e+00 4702.0
1 TraesCS6A01G239000 chr6A 92.963 270 19 0 351 620 586802242 586802511 6.600000e-106 394.0
2 TraesCS6A01G239000 chr6A 77.860 542 98 18 165 697 104123480 104124008 1.470000e-82 316.0
3 TraesCS6A01G239000 chr6A 90.909 198 16 1 162 359 67124219 67124414 5.400000e-67 265.0
4 TraesCS6A01G239000 chr6A 97.727 88 2 0 615 702 59323216 59323303 4.390000e-33 152.0
5 TraesCS6A01G239000 chr6A 97.436 39 1 0 2493 2531 63097079 63097117 1.630000e-07 67.6
6 TraesCS6A01G239000 chr6B 93.576 1650 68 11 696 2328 514694805 514696433 0.000000e+00 2425.0
7 TraesCS6A01G239000 chr6B 92.079 101 5 3 615 714 551055563 551055465 3.420000e-29 139.0
8 TraesCS6A01G239000 chr6D 92.912 1679 50 17 696 2334 312069883 312068234 0.000000e+00 2377.0
9 TraesCS6A01G239000 chr1A 84.557 531 80 1 164 694 143280320 143280848 2.240000e-145 525.0
10 TraesCS6A01G239000 chr1A 90.050 201 18 1 159 359 247782483 247782681 2.510000e-65 259.0
11 TraesCS6A01G239000 chr7A 95.057 263 13 0 355 617 566530137 566529875 5.070000e-112 414.0
12 TraesCS6A01G239000 chr7A 94.052 269 15 1 355 623 679064207 679063940 8.480000e-110 407.0
13 TraesCS6A01G239000 chr7A 80.455 527 88 14 170 690 727826748 727827265 3.070000e-104 388.0
14 TraesCS6A01G239000 chr7A 92.000 275 20 2 355 628 232744066 232743793 3.970000e-103 385.0
15 TraesCS6A01G239000 chr7A 89.604 202 19 1 158 359 638749626 638749825 3.250000e-64 255.0
16 TraesCS6A01G239000 chr7A 89.552 201 19 1 159 359 385497114 385496916 1.170000e-63 254.0
17 TraesCS6A01G239000 chr7A 88.182 110 12 1 613 722 24920330 24920222 2.060000e-26 130.0
18 TraesCS6A01G239000 chr4A 94.318 264 15 0 356 619 96473274 96473537 3.050000e-109 405.0
19 TraesCS6A01G239000 chr4A 81.698 377 68 1 322 697 198192829 198192453 1.900000e-81 313.0
20 TraesCS6A01G239000 chr5A 93.358 271 16 2 351 621 480321863 480321595 1.420000e-107 399.0
21 TraesCS6A01G239000 chr5A 92.364 275 17 2 356 630 556734719 556734449 3.070000e-104 388.0
22 TraesCS6A01G239000 chr5A 79.097 421 80 8 281 697 618309945 618310361 1.490000e-72 283.0
23 TraesCS6A01G239000 chr5A 97.143 35 1 0 2500 2534 18523291 18523325 2.740000e-05 60.2
24 TraesCS6A01G239000 chr3A 93.962 265 14 2 356 619 598976399 598976662 1.420000e-107 399.0
25 TraesCS6A01G239000 chr1D 87.755 294 24 11 348 638 307212791 307212507 1.460000e-87 333.0
26 TraesCS6A01G239000 chr1D 86.348 293 33 6 348 638 11958398 11958685 1.900000e-81 313.0
27 TraesCS6A01G239000 chr2A 90.404 198 17 1 162 359 61973567 61973372 2.510000e-65 259.0
28 TraesCS6A01G239000 chr2A 90.404 198 17 2 162 359 206220843 206221038 2.510000e-65 259.0
29 TraesCS6A01G239000 chr2A 90.698 43 4 0 2504 2546 74878338 74878380 9.840000e-05 58.4
30 TraesCS6A01G239000 chr7B 97.279 147 4 0 1 147 129963782 129963636 1.510000e-62 250.0
31 TraesCS6A01G239000 chr7B 96.026 151 6 0 2 152 115184254 115184104 1.960000e-61 246.0
32 TraesCS6A01G239000 chr7B 90.909 55 4 1 2493 2546 245853105 245853159 3.510000e-09 73.1
33 TraesCS6A01G239000 chr7B 96.970 33 0 1 2500 2532 600841638 600841669 1.000000e-03 54.7
34 TraesCS6A01G239000 chr7B 100.000 28 0 0 2496 2523 166992450 166992423 5.000000e-03 52.8
35 TraesCS6A01G239000 chr5B 97.279 147 4 0 1 147 584166897 584167043 1.510000e-62 250.0
36 TraesCS6A01G239000 chr5B 96.667 150 5 0 1 150 610350218 610350069 1.510000e-62 250.0
37 TraesCS6A01G239000 chr5B 96.591 88 3 0 615 702 517207968 517208055 2.040000e-31 147.0
38 TraesCS6A01G239000 chr3B 97.279 147 4 0 1 147 131528376 131528522 1.510000e-62 250.0
39 TraesCS6A01G239000 chr1B 97.279 147 4 0 1 147 526342895 526342749 1.510000e-62 250.0
40 TraesCS6A01G239000 chr1B 77.228 202 38 7 503 697 415551978 415552178 7.450000e-21 111.0
41 TraesCS6A01G239000 chr1B 92.727 55 3 1 2493 2546 416580331 416580385 7.550000e-11 78.7
42 TraesCS6A01G239000 chrUn 96.026 151 6 0 1 151 434935629 434935779 1.960000e-61 246.0
43 TraesCS6A01G239000 chrUn 81.683 202 28 6 446 642 28673615 28673418 2.620000e-35 159.0
44 TraesCS6A01G239000 chrUn 90.566 53 4 1 2493 2544 9993379 9993327 4.550000e-08 69.4
45 TraesCS6A01G239000 chr4B 96.026 151 6 0 1 151 649583236 649583386 1.960000e-61 246.0
46 TraesCS6A01G239000 chr4B 94.904 157 7 1 1 156 660752656 660752812 7.040000e-61 244.0
47 TraesCS6A01G239000 chr2B 82.482 137 23 1 2361 2496 606280560 606280424 4.450000e-23 119.0
48 TraesCS6A01G239000 chr2B 90.909 55 4 1 2493 2546 725732197 725732251 3.510000e-09 73.1
49 TraesCS6A01G239000 chr7D 90.909 55 4 1 2493 2546 213792567 213792621 3.510000e-09 73.1
50 TraesCS6A01G239000 chr3D 90.566 53 5 0 2494 2546 11792268 11792216 1.260000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G239000 chr6A 448649675 448652220 2545 True 4702 4702 100.000 1 2546 1 chr6A.!!$R1 2545
1 TraesCS6A01G239000 chr6A 104123480 104124008 528 False 316 316 77.860 165 697 1 chr6A.!!$F4 532
2 TraesCS6A01G239000 chr6B 514694805 514696433 1628 False 2425 2425 93.576 696 2328 1 chr6B.!!$F1 1632
3 TraesCS6A01G239000 chr6D 312068234 312069883 1649 True 2377 2377 92.912 696 2334 1 chr6D.!!$R1 1638
4 TraesCS6A01G239000 chr1A 143280320 143280848 528 False 525 525 84.557 164 694 1 chr1A.!!$F1 530
5 TraesCS6A01G239000 chr7A 727826748 727827265 517 False 388 388 80.455 170 690 1 chr7A.!!$F2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.105709 CCTGGAAACAAACACCCCCT 60.106 55.0 0.0 0.0 42.06 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1785 1.806461 TACGATCCGAGCTGATGGCC 61.806 60.0 0.0 0.0 43.05 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.116556 GTCCCCGGGGCTTTTTGA 59.883 61.111 36.68 13.60 34.68 2.69
18 19 1.532078 GTCCCCGGGGCTTTTTGAA 60.532 57.895 36.68 12.69 34.68 2.69
19 20 1.116536 GTCCCCGGGGCTTTTTGAAA 61.117 55.000 36.68 11.81 34.68 2.69
20 21 0.398664 TCCCCGGGGCTTTTTGAAAA 60.399 50.000 36.68 10.91 34.68 2.29
21 22 0.470341 CCCCGGGGCTTTTTGAAAAA 59.530 50.000 31.01 2.83 0.00 1.94
22 23 1.542328 CCCCGGGGCTTTTTGAAAAAG 60.542 52.381 31.01 22.45 0.00 2.27
23 24 1.414550 CCCGGGGCTTTTTGAAAAAGA 59.585 47.619 28.82 0.00 0.00 2.52
24 25 2.479837 CCGGGGCTTTTTGAAAAAGAC 58.520 47.619 28.82 26.66 34.56 3.01
25 26 2.102420 CCGGGGCTTTTTGAAAAAGACT 59.898 45.455 29.12 0.00 35.63 3.24
26 27 3.381045 CGGGGCTTTTTGAAAAAGACTC 58.619 45.455 29.12 26.26 35.63 3.36
27 28 3.068165 CGGGGCTTTTTGAAAAAGACTCT 59.932 43.478 27.97 0.00 33.56 3.24
28 29 4.621991 GGGGCTTTTTGAAAAAGACTCTC 58.378 43.478 29.12 16.42 32.96 3.20
29 30 4.099419 GGGGCTTTTTGAAAAAGACTCTCA 59.901 41.667 29.12 0.00 32.96 3.27
30 31 5.395214 GGGGCTTTTTGAAAAAGACTCTCAA 60.395 40.000 29.12 0.00 32.96 3.02
31 32 5.750547 GGGCTTTTTGAAAAAGACTCTCAAG 59.249 40.000 29.12 6.11 35.63 3.02
32 33 5.750547 GGCTTTTTGAAAAAGACTCTCAAGG 59.249 40.000 28.82 4.90 32.60 3.61
33 34 6.405842 GGCTTTTTGAAAAAGACTCTCAAGGA 60.406 38.462 28.82 0.00 32.60 3.36
34 35 6.694844 GCTTTTTGAAAAAGACTCTCAAGGAG 59.305 38.462 28.82 4.07 46.87 3.69
35 36 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
36 37 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
37 38 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
38 39 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
39 40 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
40 41 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
41 42 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
42 43 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
43 44 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
44 45 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
45 46 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
46 47 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
47 48 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
48 49 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
49 50 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
50 51 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
51 52 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
52 53 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
53 54 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
54 55 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
55 56 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
56 57 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
57 58 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
58 59 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
59 60 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
60 61 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
87 88 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
88 89 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
89 90 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
90 91 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
91 92 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
92 93 0.397816 TCCCACCCTGTTTGGTTTGG 60.398 55.000 0.00 0.00 36.12 3.28
93 94 0.689412 CCCACCCTGTTTGGTTTGGT 60.689 55.000 0.00 0.00 36.12 3.67
94 95 1.411787 CCCACCCTGTTTGGTTTGGTA 60.412 52.381 0.00 0.00 36.12 3.25
95 96 1.960689 CCACCCTGTTTGGTTTGGTAG 59.039 52.381 0.00 0.00 36.12 3.18
96 97 1.960689 CACCCTGTTTGGTTTGGTAGG 59.039 52.381 0.00 0.00 36.12 3.18
97 98 1.627864 CCCTGTTTGGTTTGGTAGGG 58.372 55.000 0.00 0.00 38.96 3.53
98 99 1.146152 CCCTGTTTGGTTTGGTAGGGA 59.854 52.381 0.00 0.00 46.19 4.20
99 100 2.235891 CCTGTTTGGTTTGGTAGGGAC 58.764 52.381 0.00 0.00 0.00 4.46
100 101 2.158519 CCTGTTTGGTTTGGTAGGGACT 60.159 50.000 0.00 0.00 46.37 3.85
101 102 3.562182 CTGTTTGGTTTGGTAGGGACTT 58.438 45.455 0.00 0.00 41.75 3.01
102 103 3.958147 CTGTTTGGTTTGGTAGGGACTTT 59.042 43.478 0.00 0.00 41.75 2.66
103 104 4.354662 TGTTTGGTTTGGTAGGGACTTTT 58.645 39.130 0.00 0.00 41.75 2.27
104 105 4.778427 TGTTTGGTTTGGTAGGGACTTTTT 59.222 37.500 0.00 0.00 41.75 1.94
105 106 5.105269 TGTTTGGTTTGGTAGGGACTTTTTC 60.105 40.000 0.00 0.00 41.75 2.29
106 107 4.529716 TGGTTTGGTAGGGACTTTTTCT 57.470 40.909 0.00 0.00 41.75 2.52
107 108 5.649970 TGGTTTGGTAGGGACTTTTTCTA 57.350 39.130 0.00 0.00 41.75 2.10
108 109 5.627135 TGGTTTGGTAGGGACTTTTTCTAG 58.373 41.667 0.00 0.00 41.75 2.43
109 110 5.133153 TGGTTTGGTAGGGACTTTTTCTAGT 59.867 40.000 0.00 0.00 41.75 2.57
110 111 5.704515 GGTTTGGTAGGGACTTTTTCTAGTC 59.295 44.000 0.00 0.00 43.05 2.59
119 120 5.479124 GACTTTTTCTAGTCCCTACACCA 57.521 43.478 0.00 0.00 38.88 4.17
120 121 5.861727 GACTTTTTCTAGTCCCTACACCAA 58.138 41.667 0.00 0.00 38.88 3.67
121 122 6.256643 ACTTTTTCTAGTCCCTACACCAAA 57.743 37.500 0.00 0.00 0.00 3.28
122 123 6.665695 ACTTTTTCTAGTCCCTACACCAAAA 58.334 36.000 0.00 0.00 0.00 2.44
123 124 7.120716 ACTTTTTCTAGTCCCTACACCAAAAA 58.879 34.615 0.00 0.00 0.00 1.94
124 125 7.284716 ACTTTTTCTAGTCCCTACACCAAAAAG 59.715 37.037 13.11 13.11 39.45 2.27
125 126 5.899631 TTCTAGTCCCTACACCAAAAAGT 57.100 39.130 0.00 0.00 0.00 2.66
126 127 5.479124 TCTAGTCCCTACACCAAAAAGTC 57.521 43.478 0.00 0.00 0.00 3.01
127 128 3.503800 AGTCCCTACACCAAAAAGTCC 57.496 47.619 0.00 0.00 0.00 3.85
128 129 2.107726 AGTCCCTACACCAAAAAGTCCC 59.892 50.000 0.00 0.00 0.00 4.46
129 130 2.107726 GTCCCTACACCAAAAAGTCCCT 59.892 50.000 0.00 0.00 0.00 4.20
130 131 2.107552 TCCCTACACCAAAAAGTCCCTG 59.892 50.000 0.00 0.00 0.00 4.45
131 132 2.514803 CCTACACCAAAAAGTCCCTGG 58.485 52.381 0.00 0.00 36.24 4.45
132 133 2.107552 CCTACACCAAAAAGTCCCTGGA 59.892 50.000 0.00 0.00 34.16 3.86
133 134 2.838637 ACACCAAAAAGTCCCTGGAA 57.161 45.000 0.00 0.00 34.16 3.53
134 135 3.108847 ACACCAAAAAGTCCCTGGAAA 57.891 42.857 0.00 0.00 34.16 3.13
135 136 2.764010 ACACCAAAAAGTCCCTGGAAAC 59.236 45.455 0.00 0.00 34.16 2.78
136 137 2.763448 CACCAAAAAGTCCCTGGAAACA 59.237 45.455 0.00 0.00 39.59 2.83
137 138 3.196685 CACCAAAAAGTCCCTGGAAACAA 59.803 43.478 0.00 0.00 42.06 2.83
138 139 3.841255 ACCAAAAAGTCCCTGGAAACAAA 59.159 39.130 0.00 0.00 42.06 2.83
139 140 4.188462 CCAAAAAGTCCCTGGAAACAAAC 58.812 43.478 0.00 0.00 42.06 2.93
140 141 4.323104 CCAAAAAGTCCCTGGAAACAAACA 60.323 41.667 0.00 0.00 42.06 2.83
141 142 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
142 143 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
143 144 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
144 145 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
145 146 1.118965 CCCTGGAAACAAACACCCCC 61.119 60.000 0.00 0.00 42.06 5.40
146 147 0.105709 CCTGGAAACAAACACCCCCT 60.106 55.000 0.00 0.00 42.06 4.79
147 148 1.039856 CTGGAAACAAACACCCCCTG 58.960 55.000 0.00 0.00 42.06 4.45
148 149 0.631753 TGGAAACAAACACCCCCTGA 59.368 50.000 0.00 0.00 37.44 3.86
149 150 1.007238 TGGAAACAAACACCCCCTGAA 59.993 47.619 0.00 0.00 37.44 3.02
150 151 2.325484 GGAAACAAACACCCCCTGAAT 58.675 47.619 0.00 0.00 0.00 2.57
151 152 2.299013 GGAAACAAACACCCCCTGAATC 59.701 50.000 0.00 0.00 0.00 2.52
152 153 3.230976 GAAACAAACACCCCCTGAATCT 58.769 45.455 0.00 0.00 0.00 2.40
153 154 2.292828 ACAAACACCCCCTGAATCTG 57.707 50.000 0.00 0.00 0.00 2.90
154 155 1.780309 ACAAACACCCCCTGAATCTGA 59.220 47.619 0.00 0.00 0.00 3.27
155 156 2.176798 ACAAACACCCCCTGAATCTGAA 59.823 45.455 0.00 0.00 0.00 3.02
156 157 3.181418 ACAAACACCCCCTGAATCTGAAT 60.181 43.478 0.00 0.00 0.00 2.57
157 158 3.833559 AACACCCCCTGAATCTGAATT 57.166 42.857 0.00 0.00 0.00 2.17
158 159 3.372440 ACACCCCCTGAATCTGAATTC 57.628 47.619 0.00 0.00 41.48 2.17
159 160 2.922283 ACACCCCCTGAATCTGAATTCT 59.078 45.455 7.05 0.00 41.63 2.40
160 161 3.285484 CACCCCCTGAATCTGAATTCTG 58.715 50.000 7.05 6.50 41.63 3.02
161 162 3.054139 CACCCCCTGAATCTGAATTCTGA 60.054 47.826 16.27 16.27 41.10 3.27
162 163 3.201708 ACCCCCTGAATCTGAATTCTGAG 59.798 47.826 18.38 4.07 41.10 3.35
167 168 3.276857 TGAATCTGAATTCTGAGGCTGC 58.723 45.455 18.38 3.87 41.63 5.25
174 175 0.107654 ATTCTGAGGCTGCCCGTAAC 60.108 55.000 16.57 2.89 35.76 2.50
175 176 1.476845 TTCTGAGGCTGCCCGTAACA 61.477 55.000 16.57 7.42 35.76 2.41
191 192 6.321690 GCCCGTAACAGGAGTATCATAGATAT 59.678 42.308 0.00 0.00 36.25 1.63
192 193 7.501559 GCCCGTAACAGGAGTATCATAGATATA 59.498 40.741 0.00 0.00 36.25 0.86
193 194 9.058174 CCCGTAACAGGAGTATCATAGATATAG 57.942 40.741 0.00 0.00 36.25 1.31
194 195 8.561212 CCGTAACAGGAGTATCATAGATATAGC 58.439 40.741 0.00 0.00 36.25 2.97
238 239 7.448420 TCAATTTTGATGAGGTGGCATAAAAA 58.552 30.769 0.00 0.00 40.85 1.94
319 320 1.798223 GCTACTTTGTGTCATGCGTGA 59.202 47.619 3.97 3.97 0.00 4.35
594 595 5.818136 TTGACCAAAGCTAATATGCAGAC 57.182 39.130 0.00 0.00 34.99 3.51
627 628 7.569639 AACGAAGAGAGTACTATGCATTAGA 57.430 36.000 3.54 0.00 0.00 2.10
742 744 1.808411 TTCTAAACAAGCGAGCCTGG 58.192 50.000 0.00 0.00 0.00 4.45
748 750 2.604686 AAGCGAGCCTGGGTGAGA 60.605 61.111 1.59 0.00 0.00 3.27
806 808 3.275999 CTGATCATGCATGGTCACTCAA 58.724 45.455 33.70 16.18 42.61 3.02
813 815 2.014068 GCATGGTCACTCAAGCCTACC 61.014 57.143 0.00 0.00 0.00 3.18
837 845 1.400142 CCACTCTCACTCTGAGTAGCG 59.600 57.143 10.47 6.40 44.58 4.26
996 1004 1.211703 AGCACTCTCCAGAGATCGAGA 59.788 52.381 10.68 0.00 44.74 4.04
1549 1589 3.230245 CCGGAGAGCCCTAGCCAG 61.230 72.222 0.00 0.00 41.25 4.85
1556 1596 2.365635 GCCCTAGCCAGACCAGGA 60.366 66.667 0.00 0.00 0.00 3.86
1645 1685 4.505217 CATCAAGTGCGTCGCGGC 62.505 66.667 13.38 1.93 0.00 6.53
1699 1739 2.536928 GCGTGATTTGTAATCGAGTGCC 60.537 50.000 0.00 0.00 0.00 5.01
1801 1841 3.515630 TCTTGCGTTCTCATCTCATGTC 58.484 45.455 0.00 0.00 0.00 3.06
1867 1907 2.083774 TCCGTTGATGAATTCCAGTGC 58.916 47.619 2.27 0.00 0.00 4.40
1871 1911 1.737838 TGATGAATTCCAGTGCCGTC 58.262 50.000 2.27 0.00 0.00 4.79
1945 1985 1.334869 ACAAACTGAAAAGGCAGCTCG 59.665 47.619 0.00 0.00 39.51 5.03
2077 2125 4.894798 GCTGCTGCGAGAATATTACTAC 57.105 45.455 0.00 0.00 0.00 2.73
2078 2126 4.551388 GCTGCTGCGAGAATATTACTACT 58.449 43.478 0.00 0.00 0.00 2.57
2079 2127 5.700846 GCTGCTGCGAGAATATTACTACTA 58.299 41.667 0.00 0.00 0.00 1.82
2100 2148 3.741476 GTGGGGCTGCTTTGCGAG 61.741 66.667 0.00 0.00 0.00 5.03
2121 2169 4.980573 AGCATTGTGTAGAGGTTTGGTTA 58.019 39.130 0.00 0.00 0.00 2.85
2351 2401 7.129109 CTAGCATAGCAAGTAGTACTCTCTC 57.871 44.000 2.58 0.00 0.00 3.20
2352 2402 4.825085 AGCATAGCAAGTAGTACTCTCTCC 59.175 45.833 2.58 0.00 0.00 3.71
2353 2403 4.319911 GCATAGCAAGTAGTACTCTCTCCG 60.320 50.000 2.58 0.89 0.00 4.63
2354 2404 3.353370 AGCAAGTAGTACTCTCTCCGT 57.647 47.619 2.58 0.00 0.00 4.69
2355 2405 3.688235 AGCAAGTAGTACTCTCTCCGTT 58.312 45.455 2.58 0.00 0.00 4.44
2356 2406 4.080687 AGCAAGTAGTACTCTCTCCGTTT 58.919 43.478 2.58 0.00 0.00 3.60
2357 2407 4.156373 AGCAAGTAGTACTCTCTCCGTTTC 59.844 45.833 2.58 0.00 0.00 2.78
2358 2408 4.082895 GCAAGTAGTACTCTCTCCGTTTCA 60.083 45.833 2.58 0.00 0.00 2.69
2359 2409 5.632959 CAAGTAGTACTCTCTCCGTTTCAG 58.367 45.833 2.58 0.00 0.00 3.02
2360 2410 4.909001 AGTAGTACTCTCTCCGTTTCAGT 58.091 43.478 0.00 0.00 0.00 3.41
2361 2411 4.696402 AGTAGTACTCTCTCCGTTTCAGTG 59.304 45.833 0.00 0.00 0.00 3.66
2362 2412 2.229302 AGTACTCTCTCCGTTTCAGTGC 59.771 50.000 0.00 0.00 0.00 4.40
2363 2413 1.333177 ACTCTCTCCGTTTCAGTGCT 58.667 50.000 0.00 0.00 0.00 4.40
2364 2414 1.689273 ACTCTCTCCGTTTCAGTGCTT 59.311 47.619 0.00 0.00 0.00 3.91
2365 2415 2.288518 ACTCTCTCCGTTTCAGTGCTTC 60.289 50.000 0.00 0.00 0.00 3.86
2366 2416 1.686587 TCTCTCCGTTTCAGTGCTTCA 59.313 47.619 0.00 0.00 0.00 3.02
2367 2417 2.102420 TCTCTCCGTTTCAGTGCTTCAA 59.898 45.455 0.00 0.00 0.00 2.69
2368 2418 2.478134 CTCTCCGTTTCAGTGCTTCAAG 59.522 50.000 0.00 0.00 0.00 3.02
2369 2419 0.944386 TCCGTTTCAGTGCTTCAAGC 59.056 50.000 1.04 1.04 42.82 4.01
2370 2420 0.947244 CCGTTTCAGTGCTTCAAGCT 59.053 50.000 11.57 0.00 42.97 3.74
2371 2421 1.334419 CCGTTTCAGTGCTTCAAGCTG 60.334 52.381 11.57 1.14 42.97 4.24
2372 2422 1.334419 CGTTTCAGTGCTTCAAGCTGG 60.334 52.381 11.57 0.00 42.97 4.85
2373 2423 1.949525 GTTTCAGTGCTTCAAGCTGGA 59.050 47.619 11.57 2.51 42.97 3.86
2374 2424 1.888215 TTCAGTGCTTCAAGCTGGAG 58.112 50.000 11.57 0.00 42.97 3.86
2375 2425 1.051008 TCAGTGCTTCAAGCTGGAGA 58.949 50.000 11.57 0.67 42.97 3.71
2376 2426 1.001746 TCAGTGCTTCAAGCTGGAGAG 59.998 52.381 11.57 0.00 42.97 3.20
2377 2427 0.324285 AGTGCTTCAAGCTGGAGAGG 59.676 55.000 11.57 0.00 42.97 3.69
2378 2428 0.036022 GTGCTTCAAGCTGGAGAGGT 59.964 55.000 11.57 0.00 42.97 3.85
2379 2429 0.035881 TGCTTCAAGCTGGAGAGGTG 59.964 55.000 11.57 0.00 42.97 4.00
2380 2430 1.304509 GCTTCAAGCTGGAGAGGTGC 61.305 60.000 0.71 0.00 38.45 5.01
2381 2431 0.324285 CTTCAAGCTGGAGAGGTGCT 59.676 55.000 0.00 0.00 38.87 4.40
2382 2432 1.552337 CTTCAAGCTGGAGAGGTGCTA 59.448 52.381 0.00 0.00 35.85 3.49
2383 2433 1.644509 TCAAGCTGGAGAGGTGCTAA 58.355 50.000 0.00 0.00 35.85 3.09
2384 2434 1.552337 TCAAGCTGGAGAGGTGCTAAG 59.448 52.381 0.00 0.00 35.85 2.18
2385 2435 0.251634 AAGCTGGAGAGGTGCTAAGC 59.748 55.000 0.00 0.00 36.90 3.09
2386 2436 0.906756 AGCTGGAGAGGTGCTAAGCA 60.907 55.000 0.00 0.00 38.34 3.91
2387 2437 0.179936 GCTGGAGAGGTGCTAAGCAT 59.820 55.000 0.00 0.00 41.91 3.79
2388 2438 1.950828 CTGGAGAGGTGCTAAGCATG 58.049 55.000 0.00 0.00 41.91 4.06
2389 2439 0.107508 TGGAGAGGTGCTAAGCATGC 60.108 55.000 10.51 10.51 41.91 4.06
2390 2440 0.817229 GGAGAGGTGCTAAGCATGCC 60.817 60.000 15.66 0.00 41.91 4.40
2391 2441 0.107508 GAGAGGTGCTAAGCATGCCA 60.108 55.000 15.66 1.49 41.91 4.92
2392 2442 0.393537 AGAGGTGCTAAGCATGCCAC 60.394 55.000 15.66 14.84 41.91 5.01
2393 2443 0.677731 GAGGTGCTAAGCATGCCACA 60.678 55.000 21.32 10.41 41.91 4.17
2394 2444 0.033796 AGGTGCTAAGCATGCCACAT 60.034 50.000 21.32 14.50 41.91 3.21
2395 2445 1.212688 AGGTGCTAAGCATGCCACATA 59.787 47.619 21.32 8.11 41.91 2.29
2396 2446 2.023673 GGTGCTAAGCATGCCACATAA 58.976 47.619 21.32 0.61 41.91 1.90
2397 2447 2.426738 GGTGCTAAGCATGCCACATAAA 59.573 45.455 21.32 0.00 41.91 1.40
2398 2448 3.068590 GGTGCTAAGCATGCCACATAAAT 59.931 43.478 21.32 0.00 41.91 1.40
2399 2449 4.046462 GTGCTAAGCATGCCACATAAATG 58.954 43.478 15.66 0.00 41.91 2.32
2400 2450 3.952967 TGCTAAGCATGCCACATAAATGA 59.047 39.130 15.66 0.00 31.71 2.57
2401 2451 4.401837 TGCTAAGCATGCCACATAAATGAA 59.598 37.500 15.66 0.00 31.71 2.57
2402 2452 5.105432 TGCTAAGCATGCCACATAAATGAAA 60.105 36.000 15.66 0.00 31.71 2.69
2403 2453 5.811613 GCTAAGCATGCCACATAAATGAAAA 59.188 36.000 15.66 0.00 0.00 2.29
2404 2454 6.313411 GCTAAGCATGCCACATAAATGAAAAA 59.687 34.615 15.66 0.00 0.00 1.94
2428 2478 8.592105 AAAATGACATGACACAACAATTAAGG 57.408 30.769 0.00 0.00 0.00 2.69
2429 2479 7.523293 AATGACATGACACAACAATTAAGGA 57.477 32.000 0.00 0.00 0.00 3.36
2430 2480 6.558771 TGACATGACACAACAATTAAGGAG 57.441 37.500 0.00 0.00 0.00 3.69
2431 2481 6.295249 TGACATGACACAACAATTAAGGAGA 58.705 36.000 0.00 0.00 0.00 3.71
2432 2482 6.770303 TGACATGACACAACAATTAAGGAGAA 59.230 34.615 0.00 0.00 0.00 2.87
2433 2483 7.284261 TGACATGACACAACAATTAAGGAGAAA 59.716 33.333 0.00 0.00 0.00 2.52
2434 2484 7.651808 ACATGACACAACAATTAAGGAGAAAG 58.348 34.615 0.00 0.00 0.00 2.62
2435 2485 7.502226 ACATGACACAACAATTAAGGAGAAAGA 59.498 33.333 0.00 0.00 0.00 2.52
2436 2486 7.496529 TGACACAACAATTAAGGAGAAAGAG 57.503 36.000 0.00 0.00 0.00 2.85
2437 2487 6.017109 TGACACAACAATTAAGGAGAAAGAGC 60.017 38.462 0.00 0.00 0.00 4.09
2438 2488 5.827797 ACACAACAATTAAGGAGAAAGAGCA 59.172 36.000 0.00 0.00 0.00 4.26
2439 2489 6.491403 ACACAACAATTAAGGAGAAAGAGCAT 59.509 34.615 0.00 0.00 0.00 3.79
2440 2490 7.014615 ACACAACAATTAAGGAGAAAGAGCATT 59.985 33.333 0.00 0.00 0.00 3.56
2441 2491 7.869429 CACAACAATTAAGGAGAAAGAGCATTT 59.131 33.333 0.00 0.00 0.00 2.32
2442 2492 8.424133 ACAACAATTAAGGAGAAAGAGCATTTT 58.576 29.630 0.00 0.00 0.00 1.82
2443 2493 8.706035 CAACAATTAAGGAGAAAGAGCATTTTG 58.294 33.333 0.00 0.00 0.00 2.44
2444 2494 8.181904 ACAATTAAGGAGAAAGAGCATTTTGA 57.818 30.769 0.00 0.00 0.00 2.69
2445 2495 8.810041 ACAATTAAGGAGAAAGAGCATTTTGAT 58.190 29.630 0.00 0.00 0.00 2.57
2446 2496 9.084164 CAATTAAGGAGAAAGAGCATTTTGATG 57.916 33.333 0.00 0.00 0.00 3.07
2447 2497 8.585471 ATTAAGGAGAAAGAGCATTTTGATGA 57.415 30.769 0.00 0.00 0.00 2.92
2448 2498 8.585471 TTAAGGAGAAAGAGCATTTTGATGAT 57.415 30.769 0.00 0.00 0.00 2.45
2449 2499 6.696441 AGGAGAAAGAGCATTTTGATGATC 57.304 37.500 0.00 0.00 37.24 2.92
2457 2507 7.804843 AGAGCATTTTGATGATCTTAGGAAG 57.195 36.000 1.63 0.00 43.93 3.46
2458 2508 7.571919 AGAGCATTTTGATGATCTTAGGAAGA 58.428 34.615 1.63 0.00 43.93 2.87
2459 2509 8.051535 AGAGCATTTTGATGATCTTAGGAAGAA 58.948 33.333 1.63 0.00 43.93 2.52
2460 2510 7.994194 AGCATTTTGATGATCTTAGGAAGAAC 58.006 34.615 0.00 0.00 41.63 3.01
2461 2511 7.067981 AGCATTTTGATGATCTTAGGAAGAACC 59.932 37.037 0.00 0.00 41.63 3.62
2462 2512 7.148018 GCATTTTGATGATCTTAGGAAGAACCA 60.148 37.037 0.00 0.00 41.63 3.67
2463 2513 8.742777 CATTTTGATGATCTTAGGAAGAACCAA 58.257 33.333 0.00 0.00 41.63 3.67
2464 2514 8.884124 TTTTGATGATCTTAGGAAGAACCAAT 57.116 30.769 0.00 0.00 41.63 3.16
2465 2515 7.870509 TTGATGATCTTAGGAAGAACCAATG 57.129 36.000 0.00 0.00 41.63 2.82
2466 2516 5.824624 TGATGATCTTAGGAAGAACCAATGC 59.175 40.000 0.00 0.00 41.63 3.56
2467 2517 4.526970 TGATCTTAGGAAGAACCAATGCC 58.473 43.478 0.00 0.00 41.63 4.40
2468 2518 4.018506 TGATCTTAGGAAGAACCAATGCCA 60.019 41.667 0.00 0.00 41.63 4.92
2469 2519 4.380843 TCTTAGGAAGAACCAATGCCAA 57.619 40.909 0.00 0.00 42.04 4.52
2470 2520 4.335416 TCTTAGGAAGAACCAATGCCAAG 58.665 43.478 0.00 0.00 42.04 3.61
2471 2521 1.260544 AGGAAGAACCAATGCCAAGC 58.739 50.000 0.00 0.00 42.04 4.01
2472 2522 0.968405 GGAAGAACCAATGCCAAGCA 59.032 50.000 0.00 0.00 39.98 3.91
2473 2523 1.337167 GGAAGAACCAATGCCAAGCAC 60.337 52.381 0.00 0.00 39.05 4.40
2474 2524 0.314935 AAGAACCAATGCCAAGCACG 59.685 50.000 0.00 0.00 43.04 5.34
2475 2525 0.823356 AGAACCAATGCCAAGCACGT 60.823 50.000 0.00 0.00 43.04 4.49
2476 2526 0.664166 GAACCAATGCCAAGCACGTG 60.664 55.000 12.28 12.28 43.04 4.49
2477 2527 1.391157 AACCAATGCCAAGCACGTGT 61.391 50.000 18.38 0.68 43.04 4.49
2478 2528 0.536233 ACCAATGCCAAGCACGTGTA 60.536 50.000 18.38 0.00 43.04 2.90
2479 2529 0.168788 CCAATGCCAAGCACGTGTAG 59.831 55.000 18.38 7.21 43.04 2.74
2480 2530 0.454957 CAATGCCAAGCACGTGTAGC 60.455 55.000 18.38 14.77 43.04 3.58
2481 2531 0.606401 AATGCCAAGCACGTGTAGCT 60.606 50.000 18.38 5.06 43.04 3.32
2482 2532 0.249120 ATGCCAAGCACGTGTAGCTA 59.751 50.000 18.38 6.62 43.04 3.32
2483 2533 0.389817 TGCCAAGCACGTGTAGCTAG 60.390 55.000 18.38 4.83 42.53 3.42
2484 2534 1.084370 GCCAAGCACGTGTAGCTAGG 61.084 60.000 18.38 11.60 42.53 3.02
2485 2535 0.246635 CCAAGCACGTGTAGCTAGGT 59.753 55.000 18.38 0.00 42.53 3.08
2486 2536 1.475280 CCAAGCACGTGTAGCTAGGTA 59.525 52.381 18.38 0.00 42.53 3.08
2487 2537 2.094390 CCAAGCACGTGTAGCTAGGTAA 60.094 50.000 18.38 0.00 42.53 2.85
2488 2538 3.581755 CAAGCACGTGTAGCTAGGTAAA 58.418 45.455 18.38 0.00 42.53 2.01
2489 2539 3.227810 AGCACGTGTAGCTAGGTAAAC 57.772 47.619 18.38 11.61 41.32 2.01
2490 2540 2.094338 AGCACGTGTAGCTAGGTAAACC 60.094 50.000 18.38 3.40 41.32 3.27
2491 2541 2.353011 GCACGTGTAGCTAGGTAAACCA 60.353 50.000 18.38 2.14 38.89 3.67
2492 2542 3.677976 GCACGTGTAGCTAGGTAAACCAT 60.678 47.826 18.38 2.87 38.89 3.55
2493 2543 4.501071 CACGTGTAGCTAGGTAAACCATT 58.499 43.478 15.14 0.00 38.89 3.16
2494 2544 4.933400 CACGTGTAGCTAGGTAAACCATTT 59.067 41.667 15.14 0.00 38.89 2.32
2495 2545 6.101332 CACGTGTAGCTAGGTAAACCATTTA 58.899 40.000 15.14 0.00 38.89 1.40
2496 2546 6.255020 CACGTGTAGCTAGGTAAACCATTTAG 59.745 42.308 15.14 4.37 38.89 1.85
2497 2547 5.751990 CGTGTAGCTAGGTAAACCATTTAGG 59.248 44.000 15.14 0.00 45.67 2.69
2498 2548 5.526479 GTGTAGCTAGGTAAACCATTTAGGC 59.474 44.000 10.68 0.00 43.14 3.93
2499 2549 4.166246 AGCTAGGTAAACCATTTAGGCC 57.834 45.455 0.00 0.00 43.14 5.19
2500 2550 3.786450 AGCTAGGTAAACCATTTAGGCCT 59.214 43.478 11.78 11.78 43.14 5.19
2501 2551 4.135306 GCTAGGTAAACCATTTAGGCCTC 58.865 47.826 9.68 0.00 43.14 4.70
2502 2552 3.664551 AGGTAAACCATTTAGGCCTCC 57.335 47.619 9.68 0.00 43.14 4.30
2503 2553 3.198827 AGGTAAACCATTTAGGCCTCCT 58.801 45.455 9.68 1.59 43.14 3.69
2504 2554 3.596500 AGGTAAACCATTTAGGCCTCCTT 59.403 43.478 9.68 0.00 43.14 3.36
2505 2555 4.045462 AGGTAAACCATTTAGGCCTCCTTT 59.955 41.667 9.68 1.48 43.14 3.11
2506 2556 4.159693 GGTAAACCATTTAGGCCTCCTTTG 59.840 45.833 9.68 2.90 43.14 2.77
2507 2557 2.532250 ACCATTTAGGCCTCCTTTGG 57.468 50.000 9.68 15.32 43.14 3.28
2508 2558 1.716503 ACCATTTAGGCCTCCTTTGGT 59.283 47.619 9.68 16.03 43.14 3.67
2509 2559 2.111792 ACCATTTAGGCCTCCTTTGGTT 59.888 45.455 9.68 1.23 43.14 3.67
2510 2560 3.173151 CCATTTAGGCCTCCTTTGGTTT 58.827 45.455 9.68 0.00 34.61 3.27
2511 2561 3.055891 CCATTTAGGCCTCCTTTGGTTTG 60.056 47.826 9.68 0.00 34.61 2.93
2512 2562 2.302587 TTAGGCCTCCTTTGGTTTGG 57.697 50.000 9.68 0.00 34.61 3.28
2513 2563 1.451449 TAGGCCTCCTTTGGTTTGGA 58.549 50.000 9.68 0.00 34.61 3.53
2514 2564 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2526 2576 8.811994 TCCTTTGGTTTGGAGAAATTTTATAGG 58.188 33.333 0.00 0.00 0.00 2.57
2527 2577 8.811994 CCTTTGGTTTGGAGAAATTTTATAGGA 58.188 33.333 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.116536 TTTCAAAAAGCCCCGGGGAC 61.117 55.000 44.86 32.28 37.50 4.46
1 2 0.398664 TTTTCAAAAAGCCCCGGGGA 60.399 50.000 44.86 18.55 37.50 4.81
2 3 0.470341 TTTTTCAAAAAGCCCCGGGG 59.530 50.000 37.09 37.09 38.57 5.73
3 4 1.414550 TCTTTTTCAAAAAGCCCCGGG 59.585 47.619 15.80 15.80 0.00 5.73
4 5 2.102420 AGTCTTTTTCAAAAAGCCCCGG 59.898 45.455 16.60 0.00 0.00 5.73
5 6 3.068165 AGAGTCTTTTTCAAAAAGCCCCG 59.932 43.478 16.60 0.00 0.00 5.73
6 7 4.099419 TGAGAGTCTTTTTCAAAAAGCCCC 59.901 41.667 16.60 7.88 0.00 5.80
7 8 5.262588 TGAGAGTCTTTTTCAAAAAGCCC 57.737 39.130 16.60 10.05 0.00 5.19
8 9 5.750547 CCTTGAGAGTCTTTTTCAAAAAGCC 59.249 40.000 16.60 6.64 31.11 4.35
9 10 6.564328 TCCTTGAGAGTCTTTTTCAAAAAGC 58.436 36.000 16.60 11.95 31.11 3.51
10 11 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
11 12 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
12 13 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
13 14 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
14 15 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
15 16 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
16 17 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
17 18 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
18 19 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
19 20 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
20 21 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
21 22 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
22 23 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
23 24 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
24 25 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
25 26 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
26 27 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
27 28 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
28 29 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
29 30 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
30 31 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
31 32 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
32 33 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
33 34 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
34 35 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
35 36 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
36 37 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
37 38 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
67 68 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
68 69 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
69 70 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
70 71 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
71 72 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
72 73 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
73 74 0.397816 CCAAACCAAACAGGGTGGGA 60.398 55.000 0.00 0.00 41.32 4.37
74 75 0.689412 ACCAAACCAAACAGGGTGGG 60.689 55.000 9.89 1.45 46.10 4.61
75 76 1.960689 CTACCAAACCAAACAGGGTGG 59.039 52.381 0.00 0.00 46.81 4.61
76 77 1.960689 CCTACCAAACCAAACAGGGTG 59.039 52.381 0.00 0.00 41.32 4.61
77 78 1.133294 CCCTACCAAACCAAACAGGGT 60.133 52.381 0.00 0.00 45.04 4.34
78 79 1.146152 TCCCTACCAAACCAAACAGGG 59.854 52.381 0.00 0.00 43.52 4.45
79 80 2.158519 AGTCCCTACCAAACCAAACAGG 60.159 50.000 0.00 0.00 45.67 4.00
80 81 3.223674 AGTCCCTACCAAACCAAACAG 57.776 47.619 0.00 0.00 0.00 3.16
81 82 3.673543 AAGTCCCTACCAAACCAAACA 57.326 42.857 0.00 0.00 0.00 2.83
82 83 5.128171 AGAAAAAGTCCCTACCAAACCAAAC 59.872 40.000 0.00 0.00 0.00 2.93
83 84 5.274015 AGAAAAAGTCCCTACCAAACCAAA 58.726 37.500 0.00 0.00 0.00 3.28
84 85 4.874199 AGAAAAAGTCCCTACCAAACCAA 58.126 39.130 0.00 0.00 0.00 3.67
85 86 4.529716 AGAAAAAGTCCCTACCAAACCA 57.470 40.909 0.00 0.00 0.00 3.67
86 87 5.628130 ACTAGAAAAAGTCCCTACCAAACC 58.372 41.667 0.00 0.00 0.00 3.27
87 88 6.798315 GACTAGAAAAAGTCCCTACCAAAC 57.202 41.667 0.00 0.00 40.06 2.93
97 98 5.479124 TGGTGTAGGGACTAGAAAAAGTC 57.521 43.478 0.00 0.00 44.14 3.01
98 99 5.899631 TTGGTGTAGGGACTAGAAAAAGT 57.100 39.130 0.00 0.00 44.14 2.66
99 100 7.284716 ACTTTTTGGTGTAGGGACTAGAAAAAG 59.715 37.037 0.00 0.00 44.14 2.27
100 101 7.120716 ACTTTTTGGTGTAGGGACTAGAAAAA 58.879 34.615 0.00 0.00 44.14 1.94
101 102 6.665695 ACTTTTTGGTGTAGGGACTAGAAAA 58.334 36.000 0.00 0.00 44.14 2.29
102 103 6.256643 ACTTTTTGGTGTAGGGACTAGAAA 57.743 37.500 0.00 0.00 44.14 2.52
103 104 5.221783 GGACTTTTTGGTGTAGGGACTAGAA 60.222 44.000 0.00 0.00 44.14 2.10
104 105 4.285260 GGACTTTTTGGTGTAGGGACTAGA 59.715 45.833 0.00 0.00 44.14 2.43
105 106 4.565028 GGGACTTTTTGGTGTAGGGACTAG 60.565 50.000 0.00 0.00 44.14 2.57
106 107 3.328637 GGGACTTTTTGGTGTAGGGACTA 59.671 47.826 0.00 0.00 41.75 2.59
107 108 2.107726 GGGACTTTTTGGTGTAGGGACT 59.892 50.000 0.00 0.00 46.37 3.85
108 109 2.107726 AGGGACTTTTTGGTGTAGGGAC 59.892 50.000 0.00 0.00 27.25 4.46
109 110 2.107552 CAGGGACTTTTTGGTGTAGGGA 59.892 50.000 0.00 0.00 34.60 4.20
110 111 2.514803 CAGGGACTTTTTGGTGTAGGG 58.485 52.381 0.00 0.00 34.60 3.53
111 112 2.107552 TCCAGGGACTTTTTGGTGTAGG 59.892 50.000 0.00 0.00 34.60 3.18
112 113 3.502123 TCCAGGGACTTTTTGGTGTAG 57.498 47.619 0.00 0.00 34.60 2.74
113 114 3.955524 TTCCAGGGACTTTTTGGTGTA 57.044 42.857 0.00 0.00 34.60 2.90
114 115 2.764010 GTTTCCAGGGACTTTTTGGTGT 59.236 45.455 0.00 0.00 34.60 4.16
115 116 2.763448 TGTTTCCAGGGACTTTTTGGTG 59.237 45.455 0.00 0.00 34.60 4.17
116 117 3.108847 TGTTTCCAGGGACTTTTTGGT 57.891 42.857 0.00 0.00 34.60 3.67
117 118 4.188462 GTTTGTTTCCAGGGACTTTTTGG 58.812 43.478 0.00 0.00 34.60 3.28
118 119 4.629634 GTGTTTGTTTCCAGGGACTTTTTG 59.370 41.667 0.00 0.00 34.60 2.44
119 120 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
120 121 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
121 122 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
122 123 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
123 124 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
124 125 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
125 126 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
126 127 1.118965 GGGGGTGTTTGTTTCCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
127 128 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.00 0.00 4.45
128 129 1.039856 CAGGGGGTGTTTGTTTCCAG 58.960 55.000 0.00 0.00 0.00 3.86
129 130 0.631753 TCAGGGGGTGTTTGTTTCCA 59.368 50.000 0.00 0.00 0.00 3.53
130 131 1.783071 TTCAGGGGGTGTTTGTTTCC 58.217 50.000 0.00 0.00 0.00 3.13
131 132 3.005791 CAGATTCAGGGGGTGTTTGTTTC 59.994 47.826 0.00 0.00 0.00 2.78
132 133 2.965147 CAGATTCAGGGGGTGTTTGTTT 59.035 45.455 0.00 0.00 0.00 2.83
133 134 2.176798 TCAGATTCAGGGGGTGTTTGTT 59.823 45.455 0.00 0.00 0.00 2.83
134 135 1.780309 TCAGATTCAGGGGGTGTTTGT 59.220 47.619 0.00 0.00 0.00 2.83
135 136 2.584835 TCAGATTCAGGGGGTGTTTG 57.415 50.000 0.00 0.00 0.00 2.93
136 137 3.833559 ATTCAGATTCAGGGGGTGTTT 57.166 42.857 0.00 0.00 0.00 2.83
137 138 3.334881 AGAATTCAGATTCAGGGGGTGTT 59.665 43.478 8.44 0.00 43.35 3.32
138 139 2.922283 AGAATTCAGATTCAGGGGGTGT 59.078 45.455 8.44 0.00 43.35 4.16
139 140 3.054139 TCAGAATTCAGATTCAGGGGGTG 60.054 47.826 8.44 0.00 43.35 4.61
140 141 3.192944 TCAGAATTCAGATTCAGGGGGT 58.807 45.455 8.44 0.00 43.35 4.95
141 142 3.434739 CCTCAGAATTCAGATTCAGGGGG 60.435 52.174 8.44 0.00 42.66 5.40
142 143 3.818180 CCTCAGAATTCAGATTCAGGGG 58.182 50.000 8.44 0.00 41.34 4.79
143 144 3.117963 AGCCTCAGAATTCAGATTCAGGG 60.118 47.826 8.44 3.66 43.35 4.45
144 145 3.878103 CAGCCTCAGAATTCAGATTCAGG 59.122 47.826 8.44 4.03 43.35 3.86
145 146 3.312973 GCAGCCTCAGAATTCAGATTCAG 59.687 47.826 8.44 0.00 43.35 3.02
146 147 3.276857 GCAGCCTCAGAATTCAGATTCA 58.723 45.455 8.44 0.00 43.35 2.57
147 148 2.617774 GGCAGCCTCAGAATTCAGATTC 59.382 50.000 3.29 0.30 41.63 2.52
148 149 2.652590 GGCAGCCTCAGAATTCAGATT 58.347 47.619 3.29 0.00 0.00 2.40
149 150 1.133853 GGGCAGCCTCAGAATTCAGAT 60.134 52.381 12.43 0.00 0.00 2.90
150 151 0.254178 GGGCAGCCTCAGAATTCAGA 59.746 55.000 12.43 4.12 0.00 3.27
151 152 1.094073 CGGGCAGCCTCAGAATTCAG 61.094 60.000 12.43 0.00 0.00 3.02
152 153 1.078214 CGGGCAGCCTCAGAATTCA 60.078 57.895 12.43 0.00 0.00 2.57
153 154 0.178068 TACGGGCAGCCTCAGAATTC 59.822 55.000 12.43 0.00 0.00 2.17
154 155 0.618458 TTACGGGCAGCCTCAGAATT 59.382 50.000 12.43 0.00 0.00 2.17
155 156 0.107654 GTTACGGGCAGCCTCAGAAT 60.108 55.000 12.43 0.00 0.00 2.40
156 157 1.295423 GTTACGGGCAGCCTCAGAA 59.705 57.895 12.43 0.00 0.00 3.02
157 158 1.888436 CTGTTACGGGCAGCCTCAGA 61.888 60.000 12.43 0.00 0.00 3.27
158 159 1.448540 CTGTTACGGGCAGCCTCAG 60.449 63.158 12.43 5.97 0.00 3.35
159 160 2.662596 CTGTTACGGGCAGCCTCA 59.337 61.111 12.43 2.84 0.00 3.86
160 161 2.125106 CCTGTTACGGGCAGCCTC 60.125 66.667 12.43 0.00 32.93 4.70
161 162 2.606519 TCCTGTTACGGGCAGCCT 60.607 61.111 12.43 0.00 32.93 4.58
162 163 1.610554 TACTCCTGTTACGGGCAGCC 61.611 60.000 1.26 1.26 32.93 4.85
167 168 7.883391 ATATCTATGATACTCCTGTTACGGG 57.117 40.000 3.32 3.32 0.00 5.28
204 205 8.472413 CCACCTCATCAAAATTGATTAGTTGAT 58.528 33.333 13.33 0.00 45.13 2.57
213 214 6.602410 TTTATGCCACCTCATCAAAATTGA 57.398 33.333 0.00 0.00 42.14 2.57
378 379 6.992063 ACTTCAGTCAAACCTAATATGCAG 57.008 37.500 0.00 0.00 0.00 4.41
379 380 6.985188 GACTTCAGTCAAACCTAATATGCA 57.015 37.500 1.86 0.00 44.18 3.96
555 556 7.817418 TTGGTCAAAGTCAAGCTTTATAAGT 57.183 32.000 0.00 0.00 44.95 2.24
556 557 8.733857 CTTTGGTCAAAGTCAAGCTTTATAAG 57.266 34.615 13.58 0.00 44.95 1.73
607 608 8.704849 ACATCTCTAATGCATAGTACTCTCTT 57.295 34.615 0.00 0.00 33.08 2.85
742 744 0.601311 GCGCCATACCTCATCTCACC 60.601 60.000 0.00 0.00 0.00 4.02
748 750 1.526917 GCCTTGCGCCATACCTCAT 60.527 57.895 4.18 0.00 0.00 2.90
785 787 2.914059 TGAGTGACCATGCATGATCAG 58.086 47.619 24.52 11.40 0.00 2.90
806 808 0.409876 TGAGAGTGGAGTGGTAGGCT 59.590 55.000 0.00 0.00 0.00 4.58
1549 1589 2.048127 GGTGACAGCGTCCTGGTC 60.048 66.667 6.30 0.00 43.53 4.02
1699 1739 3.512680 CCCTCAAAGAGTAGTACAAGCG 58.487 50.000 2.52 0.00 0.00 4.68
1745 1785 1.806461 TACGATCCGAGCTGATGGCC 61.806 60.000 0.00 0.00 43.05 5.36
1801 1841 3.921630 TCGAATGATGCAATGCAAGTTTG 59.078 39.130 13.45 11.15 43.62 2.93
1934 1974 2.046507 CAGAGCCGAGCTGCCTTT 60.047 61.111 2.98 0.00 39.88 3.11
1945 1985 2.630592 GAATCCGTCGACCCAGAGCC 62.631 65.000 10.58 0.00 0.00 4.70
2077 2125 3.628646 AAAGCAGCCCCACCGCTAG 62.629 63.158 0.00 0.00 36.82 3.42
2078 2126 3.646715 AAAGCAGCCCCACCGCTA 61.647 61.111 0.00 0.00 36.82 4.26
2100 2148 4.156008 CCTAACCAAACCTCTACACAATGC 59.844 45.833 0.00 0.00 0.00 3.56
2236 2284 0.456653 GTGCTTGGCGCCAAATACTG 60.457 55.000 38.96 28.22 38.05 2.74
2331 2381 4.817464 ACGGAGAGAGTACTACTTGCTATG 59.183 45.833 0.00 0.00 0.00 2.23
2334 2384 3.353370 ACGGAGAGAGTACTACTTGCT 57.647 47.619 0.00 0.00 0.00 3.91
2335 2385 4.082895 TGAAACGGAGAGAGTACTACTTGC 60.083 45.833 0.00 0.00 0.00 4.01
2336 2386 5.181622 ACTGAAACGGAGAGAGTACTACTTG 59.818 44.000 0.00 0.00 0.00 3.16
2337 2387 5.181622 CACTGAAACGGAGAGAGTACTACTT 59.818 44.000 0.00 0.00 0.00 2.24
2338 2388 4.696402 CACTGAAACGGAGAGAGTACTACT 59.304 45.833 0.00 0.00 0.00 2.57
2339 2389 4.672283 GCACTGAAACGGAGAGAGTACTAC 60.672 50.000 0.00 0.00 0.00 2.73
2340 2390 3.439476 GCACTGAAACGGAGAGAGTACTA 59.561 47.826 0.00 0.00 0.00 1.82
2341 2391 2.229302 GCACTGAAACGGAGAGAGTACT 59.771 50.000 0.00 0.00 0.00 2.73
2342 2392 2.229302 AGCACTGAAACGGAGAGAGTAC 59.771 50.000 0.00 0.00 0.00 2.73
2343 2393 2.515854 AGCACTGAAACGGAGAGAGTA 58.484 47.619 0.00 0.00 0.00 2.59
2344 2394 1.333177 AGCACTGAAACGGAGAGAGT 58.667 50.000 0.00 0.00 0.00 3.24
2345 2395 2.288457 TGAAGCACTGAAACGGAGAGAG 60.288 50.000 0.00 0.00 0.00 3.20
2346 2396 1.686587 TGAAGCACTGAAACGGAGAGA 59.313 47.619 0.00 0.00 0.00 3.10
2347 2397 2.154854 TGAAGCACTGAAACGGAGAG 57.845 50.000 0.00 0.00 0.00 3.20
2348 2398 2.483876 CTTGAAGCACTGAAACGGAGA 58.516 47.619 0.00 0.00 0.00 3.71
2349 2399 1.069636 GCTTGAAGCACTGAAACGGAG 60.070 52.381 13.09 0.00 41.89 4.63
2350 2400 0.944386 GCTTGAAGCACTGAAACGGA 59.056 50.000 13.09 0.00 41.89 4.69
2351 2401 0.947244 AGCTTGAAGCACTGAAACGG 59.053 50.000 20.45 0.00 45.56 4.44
2352 2402 1.334419 CCAGCTTGAAGCACTGAAACG 60.334 52.381 20.45 0.00 45.56 3.60
2353 2403 1.949525 TCCAGCTTGAAGCACTGAAAC 59.050 47.619 20.45 0.00 45.56 2.78
2354 2404 2.158769 TCTCCAGCTTGAAGCACTGAAA 60.159 45.455 20.45 0.00 45.56 2.69
2355 2405 1.417517 TCTCCAGCTTGAAGCACTGAA 59.582 47.619 20.45 0.00 45.56 3.02
2356 2406 1.001746 CTCTCCAGCTTGAAGCACTGA 59.998 52.381 20.45 11.03 45.56 3.41
2357 2407 1.440708 CTCTCCAGCTTGAAGCACTG 58.559 55.000 20.45 9.65 45.56 3.66
2358 2408 0.324285 CCTCTCCAGCTTGAAGCACT 59.676 55.000 20.45 0.00 45.56 4.40
2359 2409 0.036022 ACCTCTCCAGCTTGAAGCAC 59.964 55.000 20.45 0.00 45.56 4.40
2360 2410 0.035881 CACCTCTCCAGCTTGAAGCA 59.964 55.000 20.45 0.00 45.56 3.91
2361 2411 1.304509 GCACCTCTCCAGCTTGAAGC 61.305 60.000 9.59 9.59 42.84 3.86
2362 2412 0.324285 AGCACCTCTCCAGCTTGAAG 59.676 55.000 0.00 0.00 34.37 3.02
2363 2413 1.644509 TAGCACCTCTCCAGCTTGAA 58.355 50.000 0.00 0.00 39.68 2.69
2364 2414 1.552337 CTTAGCACCTCTCCAGCTTGA 59.448 52.381 0.00 0.00 39.68 3.02
2365 2415 2.011046 GCTTAGCACCTCTCCAGCTTG 61.011 57.143 0.00 0.00 39.68 4.01
2366 2416 0.251634 GCTTAGCACCTCTCCAGCTT 59.748 55.000 0.00 0.00 39.68 3.74
2367 2417 0.906756 TGCTTAGCACCTCTCCAGCT 60.907 55.000 1.39 0.00 42.14 4.24
2368 2418 0.179936 ATGCTTAGCACCTCTCCAGC 59.820 55.000 9.82 0.00 43.04 4.85
2369 2419 1.950828 CATGCTTAGCACCTCTCCAG 58.049 55.000 9.82 0.00 43.04 3.86
2370 2420 0.107508 GCATGCTTAGCACCTCTCCA 60.108 55.000 9.82 0.00 43.04 3.86
2371 2421 0.817229 GGCATGCTTAGCACCTCTCC 60.817 60.000 18.92 2.72 43.04 3.71
2372 2422 0.107508 TGGCATGCTTAGCACCTCTC 60.108 55.000 18.92 0.00 43.04 3.20
2373 2423 0.393537 GTGGCATGCTTAGCACCTCT 60.394 55.000 18.92 0.00 43.04 3.69
2374 2424 0.677731 TGTGGCATGCTTAGCACCTC 60.678 55.000 18.92 8.93 43.04 3.85
2375 2425 0.033796 ATGTGGCATGCTTAGCACCT 60.034 50.000 18.92 7.18 43.04 4.00
2376 2426 1.679139 TATGTGGCATGCTTAGCACC 58.321 50.000 18.92 8.08 43.04 5.01
2377 2427 3.781079 TTTATGTGGCATGCTTAGCAC 57.219 42.857 18.92 16.85 43.04 4.40
2378 2428 3.952967 TCATTTATGTGGCATGCTTAGCA 59.047 39.130 18.92 10.09 44.86 3.49
2379 2429 4.572985 TCATTTATGTGGCATGCTTAGC 57.427 40.909 18.92 0.00 0.00 3.09
2380 2430 7.830940 TTTTTCATTTATGTGGCATGCTTAG 57.169 32.000 18.92 0.00 0.00 2.18
2402 2452 9.044150 CCTTAATTGTTGTGTCATGTCATTTTT 57.956 29.630 0.00 0.00 0.00 1.94
2403 2453 8.420222 TCCTTAATTGTTGTGTCATGTCATTTT 58.580 29.630 0.00 0.00 0.00 1.82
2404 2454 7.950512 TCCTTAATTGTTGTGTCATGTCATTT 58.049 30.769 0.00 0.00 0.00 2.32
2405 2455 7.448161 TCTCCTTAATTGTTGTGTCATGTCATT 59.552 33.333 0.00 0.00 0.00 2.57
2406 2456 6.942005 TCTCCTTAATTGTTGTGTCATGTCAT 59.058 34.615 0.00 0.00 0.00 3.06
2407 2457 6.295249 TCTCCTTAATTGTTGTGTCATGTCA 58.705 36.000 0.00 0.00 0.00 3.58
2408 2458 6.801539 TCTCCTTAATTGTTGTGTCATGTC 57.198 37.500 0.00 0.00 0.00 3.06
2409 2459 7.502226 TCTTTCTCCTTAATTGTTGTGTCATGT 59.498 33.333 0.00 0.00 0.00 3.21
2410 2460 7.874940 TCTTTCTCCTTAATTGTTGTGTCATG 58.125 34.615 0.00 0.00 0.00 3.07
2411 2461 7.308830 GCTCTTTCTCCTTAATTGTTGTGTCAT 60.309 37.037 0.00 0.00 0.00 3.06
2412 2462 6.017109 GCTCTTTCTCCTTAATTGTTGTGTCA 60.017 38.462 0.00 0.00 0.00 3.58
2413 2463 6.017109 TGCTCTTTCTCCTTAATTGTTGTGTC 60.017 38.462 0.00 0.00 0.00 3.67
2414 2464 5.827797 TGCTCTTTCTCCTTAATTGTTGTGT 59.172 36.000 0.00 0.00 0.00 3.72
2415 2465 6.317789 TGCTCTTTCTCCTTAATTGTTGTG 57.682 37.500 0.00 0.00 0.00 3.33
2416 2466 7.530426 AATGCTCTTTCTCCTTAATTGTTGT 57.470 32.000 0.00 0.00 0.00 3.32
2417 2467 8.706035 CAAAATGCTCTTTCTCCTTAATTGTTG 58.294 33.333 0.00 0.00 0.00 3.33
2418 2468 8.641541 TCAAAATGCTCTTTCTCCTTAATTGTT 58.358 29.630 0.00 0.00 0.00 2.83
2419 2469 8.181904 TCAAAATGCTCTTTCTCCTTAATTGT 57.818 30.769 0.00 0.00 0.00 2.71
2420 2470 9.084164 CATCAAAATGCTCTTTCTCCTTAATTG 57.916 33.333 0.00 0.00 0.00 2.32
2421 2471 9.028284 TCATCAAAATGCTCTTTCTCCTTAATT 57.972 29.630 0.00 0.00 32.58 1.40
2422 2472 8.585471 TCATCAAAATGCTCTTTCTCCTTAAT 57.415 30.769 0.00 0.00 32.58 1.40
2423 2473 8.585471 ATCATCAAAATGCTCTTTCTCCTTAA 57.415 30.769 0.00 0.00 32.58 1.85
2424 2474 8.051535 AGATCATCAAAATGCTCTTTCTCCTTA 58.948 33.333 0.00 0.00 35.36 2.69
2425 2475 6.890814 AGATCATCAAAATGCTCTTTCTCCTT 59.109 34.615 0.00 0.00 35.36 3.36
2426 2476 6.424883 AGATCATCAAAATGCTCTTTCTCCT 58.575 36.000 0.00 0.00 35.36 3.69
2427 2477 6.696441 AGATCATCAAAATGCTCTTTCTCC 57.304 37.500 0.00 0.00 35.36 3.71
2428 2478 8.344098 CCTAAGATCATCAAAATGCTCTTTCTC 58.656 37.037 9.10 0.00 42.76 2.87
2429 2479 8.051535 TCCTAAGATCATCAAAATGCTCTTTCT 58.948 33.333 9.10 0.00 42.76 2.52
2430 2480 8.218338 TCCTAAGATCATCAAAATGCTCTTTC 57.782 34.615 9.10 0.00 42.76 2.62
2431 2481 8.585471 TTCCTAAGATCATCAAAATGCTCTTT 57.415 30.769 9.10 0.00 42.76 2.52
2432 2482 8.051535 TCTTCCTAAGATCATCAAAATGCTCTT 58.948 33.333 8.88 8.88 45.58 2.85
2433 2483 7.571919 TCTTCCTAAGATCATCAAAATGCTCT 58.428 34.615 0.00 0.00 39.47 4.09
2434 2484 7.798596 TCTTCCTAAGATCATCAAAATGCTC 57.201 36.000 0.00 0.00 30.50 4.26
2435 2485 7.067981 GGTTCTTCCTAAGATCATCAAAATGCT 59.932 37.037 0.00 0.00 37.38 3.79
2436 2486 7.148018 TGGTTCTTCCTAAGATCATCAAAATGC 60.148 37.037 0.00 0.00 37.38 3.56
2437 2487 8.284945 TGGTTCTTCCTAAGATCATCAAAATG 57.715 34.615 0.00 0.00 37.38 2.32
2438 2488 8.884124 TTGGTTCTTCCTAAGATCATCAAAAT 57.116 30.769 0.00 0.00 37.38 1.82
2439 2489 8.742777 CATTGGTTCTTCCTAAGATCATCAAAA 58.257 33.333 0.00 0.00 37.38 2.44
2440 2490 7.148018 GCATTGGTTCTTCCTAAGATCATCAAA 60.148 37.037 0.00 0.00 37.38 2.69
2441 2491 6.319658 GCATTGGTTCTTCCTAAGATCATCAA 59.680 38.462 0.00 0.00 37.38 2.57
2442 2492 5.824624 GCATTGGTTCTTCCTAAGATCATCA 59.175 40.000 0.00 0.00 37.38 3.07
2443 2493 5.240403 GGCATTGGTTCTTCCTAAGATCATC 59.760 44.000 0.00 0.00 37.38 2.92
2444 2494 5.136105 GGCATTGGTTCTTCCTAAGATCAT 58.864 41.667 0.00 0.00 37.38 2.45
2445 2495 4.018506 TGGCATTGGTTCTTCCTAAGATCA 60.019 41.667 0.00 0.00 37.38 2.92
2446 2496 4.526970 TGGCATTGGTTCTTCCTAAGATC 58.473 43.478 0.00 0.00 37.38 2.75
2447 2497 4.591321 TGGCATTGGTTCTTCCTAAGAT 57.409 40.909 0.00 0.00 37.38 2.40
2448 2498 4.335416 CTTGGCATTGGTTCTTCCTAAGA 58.665 43.478 0.00 0.00 37.07 2.10
2449 2499 3.119352 GCTTGGCATTGGTTCTTCCTAAG 60.119 47.826 0.00 0.00 37.07 2.18
2450 2500 2.825532 GCTTGGCATTGGTTCTTCCTAA 59.174 45.455 0.00 0.00 37.07 2.69
2451 2501 2.224992 TGCTTGGCATTGGTTCTTCCTA 60.225 45.455 0.00 0.00 33.08 2.94
2452 2502 1.260544 GCTTGGCATTGGTTCTTCCT 58.739 50.000 0.00 0.00 37.07 3.36
2453 2503 0.968405 TGCTTGGCATTGGTTCTTCC 59.032 50.000 0.00 0.00 31.71 3.46
2454 2504 1.666888 CGTGCTTGGCATTGGTTCTTC 60.667 52.381 0.00 0.00 41.91 2.87
2455 2505 0.314935 CGTGCTTGGCATTGGTTCTT 59.685 50.000 0.00 0.00 41.91 2.52
2456 2506 0.823356 ACGTGCTTGGCATTGGTTCT 60.823 50.000 0.00 0.00 41.91 3.01
2457 2507 0.664166 CACGTGCTTGGCATTGGTTC 60.664 55.000 0.82 0.00 41.91 3.62
2458 2508 1.363443 CACGTGCTTGGCATTGGTT 59.637 52.632 0.82 0.00 41.91 3.67
2459 2509 0.536233 TACACGTGCTTGGCATTGGT 60.536 50.000 17.22 0.00 41.91 3.67
2460 2510 0.168788 CTACACGTGCTTGGCATTGG 59.831 55.000 17.22 0.00 41.91 3.16
2461 2511 0.454957 GCTACACGTGCTTGGCATTG 60.455 55.000 17.22 0.00 41.91 2.82
2462 2512 0.606401 AGCTACACGTGCTTGGCATT 60.606 50.000 17.22 0.00 41.91 3.56
2463 2513 0.249120 TAGCTACACGTGCTTGGCAT 59.751 50.000 17.22 3.92 41.91 4.40
2464 2514 0.389817 CTAGCTACACGTGCTTGGCA 60.390 55.000 17.22 1.50 41.46 4.92
2465 2515 1.084370 CCTAGCTACACGTGCTTGGC 61.084 60.000 17.22 11.08 43.77 4.52
2466 2516 3.050703 CCTAGCTACACGTGCTTGG 57.949 57.895 17.22 13.68 44.14 3.61
2467 2517 2.933495 TACCTAGCTACACGTGCTTG 57.067 50.000 17.22 8.14 41.46 4.01
2468 2518 3.582780 GTTTACCTAGCTACACGTGCTT 58.417 45.455 17.22 0.00 41.46 3.91
2469 2519 2.094338 GGTTTACCTAGCTACACGTGCT 60.094 50.000 17.22 10.02 43.79 4.40
2470 2520 2.265683 GGTTTACCTAGCTACACGTGC 58.734 52.381 17.22 0.86 0.00 5.34
2471 2521 3.581024 TGGTTTACCTAGCTACACGTG 57.419 47.619 15.48 15.48 36.82 4.49
2472 2522 4.813750 AATGGTTTACCTAGCTACACGT 57.186 40.909 0.00 0.00 36.82 4.49
2473 2523 5.751990 CCTAAATGGTTTACCTAGCTACACG 59.248 44.000 0.00 0.00 36.82 4.49
2474 2524 5.526479 GCCTAAATGGTTTACCTAGCTACAC 59.474 44.000 0.00 0.00 38.35 2.90
2475 2525 5.397109 GGCCTAAATGGTTTACCTAGCTACA 60.397 44.000 0.00 0.00 38.35 2.74
2476 2526 5.061853 GGCCTAAATGGTTTACCTAGCTAC 58.938 45.833 0.00 0.00 38.35 3.58
2477 2527 4.973211 AGGCCTAAATGGTTTACCTAGCTA 59.027 41.667 1.29 0.00 38.35 3.32
2478 2528 3.786450 AGGCCTAAATGGTTTACCTAGCT 59.214 43.478 1.29 0.00 38.35 3.32
2479 2529 4.135306 GAGGCCTAAATGGTTTACCTAGC 58.865 47.826 4.42 0.00 38.35 3.42
2480 2530 4.412528 AGGAGGCCTAAATGGTTTACCTAG 59.587 45.833 4.42 0.00 38.35 3.02
2481 2531 4.377134 AGGAGGCCTAAATGGTTTACCTA 58.623 43.478 4.42 0.00 38.35 3.08
2482 2532 3.198827 AGGAGGCCTAAATGGTTTACCT 58.801 45.455 4.42 0.00 38.35 3.08
2483 2533 3.664551 AGGAGGCCTAAATGGTTTACC 57.335 47.619 4.42 0.00 38.35 2.85
2484 2534 4.159693 CCAAAGGAGGCCTAAATGGTTTAC 59.840 45.833 4.42 0.00 38.35 2.01
2485 2535 4.202738 ACCAAAGGAGGCCTAAATGGTTTA 60.203 41.667 20.62 0.00 40.14 2.01
2486 2536 3.173151 CCAAAGGAGGCCTAAATGGTTT 58.827 45.455 4.42 0.00 38.35 3.27
2487 2537 2.111792 ACCAAAGGAGGCCTAAATGGTT 59.888 45.455 20.62 9.56 40.14 3.67
2488 2538 1.716503 ACCAAAGGAGGCCTAAATGGT 59.283 47.619 20.62 20.62 39.08 3.55
2489 2539 2.532250 ACCAAAGGAGGCCTAAATGG 57.468 50.000 19.57 19.57 37.73 3.16
2490 2540 3.055891 CCAAACCAAAGGAGGCCTAAATG 60.056 47.826 4.42 2.40 31.13 2.32
2491 2541 3.173151 CCAAACCAAAGGAGGCCTAAAT 58.827 45.455 4.42 0.00 31.13 1.40
2492 2542 2.178106 TCCAAACCAAAGGAGGCCTAAA 59.822 45.455 4.42 0.00 31.13 1.85
2493 2543 1.783979 TCCAAACCAAAGGAGGCCTAA 59.216 47.619 4.42 0.00 31.13 2.69
2494 2544 1.354368 CTCCAAACCAAAGGAGGCCTA 59.646 52.381 4.42 0.00 46.11 3.93
2495 2545 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
2496 2546 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
2500 2550 8.811994 CCTATAAAATTTCTCCAAACCAAAGGA 58.188 33.333 0.00 0.00 0.00 3.36
2501 2551 8.811994 TCCTATAAAATTTCTCCAAACCAAAGG 58.188 33.333 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.