Multiple sequence alignment - TraesCS6A01G238100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G238100 chr6A 100.000 4253 0 0 486 4738 447830605 447834857 0.000000e+00 7854.0
1 TraesCS6A01G238100 chr6A 91.604 1060 51 21 3435 4460 16440819 16441874 0.000000e+00 1430.0
2 TraesCS6A01G238100 chr6A 91.753 291 21 3 4448 4738 16442223 16442510 7.390000e-108 401.0
3 TraesCS6A01G238100 chr6A 100.000 126 0 0 1 126 447830120 447830245 2.850000e-57 233.0
4 TraesCS6A01G238100 chr6A 89.908 109 8 2 681 789 244164341 244164236 2.300000e-28 137.0
5 TraesCS6A01G238100 chr3A 92.005 2264 143 24 1839 4079 619778487 619776239 0.000000e+00 3144.0
6 TraesCS6A01G238100 chr3A 92.033 364 18 6 4099 4460 619776255 619775901 7.080000e-138 501.0
7 TraesCS6A01G238100 chr3A 87.047 193 18 5 4451 4643 619775549 619775364 1.340000e-50 211.0
8 TraesCS6A01G238100 chr3A 90.566 106 7 2 684 789 575762825 575762927 2.300000e-28 137.0
9 TraesCS6A01G238100 chr3A 88.182 110 10 2 680 789 705929373 705929479 1.380000e-25 128.0
10 TraesCS6A01G238100 chr2B 92.683 1394 71 13 1504 2888 129329689 129328318 0.000000e+00 1980.0
11 TraesCS6A01G238100 chr2B 92.546 872 59 6 3212 4079 129328286 129327417 0.000000e+00 1245.0
12 TraesCS6A01G238100 chr2B 90.634 363 27 5 4099 4460 129327433 129327077 4.290000e-130 475.0
13 TraesCS6A01G238100 chr2B 93.548 93 6 0 4646 4738 416060778 416060686 6.390000e-29 139.0
14 TraesCS6A01G238100 chr2B 89.908 109 8 2 681 789 736407803 736407698 2.300000e-28 137.0
15 TraesCS6A01G238100 chr2B 91.176 68 5 1 4585 4652 129325349 129325283 1.820000e-14 91.6
16 TraesCS6A01G238100 chr2A 92.744 1323 81 10 1907 3227 191977135 191978444 0.000000e+00 1897.0
17 TraesCS6A01G238100 chr2A 89.908 109 8 2 681 789 443910585 443910480 2.300000e-28 137.0
18 TraesCS6A01G238100 chr2A 87.379 103 8 4 4637 4738 376799804 376799902 3.880000e-21 113.0
19 TraesCS6A01G238100 chr1A 91.398 1395 87 15 1504 2888 132778855 132780226 0.000000e+00 1881.0
20 TraesCS6A01G238100 chr1A 91.904 877 66 5 3212 4086 132780258 132781131 0.000000e+00 1221.0
21 TraesCS6A01G238100 chr1A 88.525 366 29 7 4099 4460 132781109 132781465 9.420000e-117 431.0
22 TraesCS6A01G238100 chr1A 92.661 218 13 2 1292 1507 132778593 132778809 1.280000e-80 311.0
23 TraesCS6A01G238100 chr1A 91.935 186 10 5 4454 4638 132781818 132781999 6.080000e-64 255.0
24 TraesCS6A01G238100 chr1A 90.826 109 7 2 681 789 332964118 332964223 4.940000e-30 143.0
25 TraesCS6A01G238100 chr6D 95.562 1059 38 8 3407 4460 16141078 16142132 0.000000e+00 1687.0
26 TraesCS6A01G238100 chr6D 84.512 820 105 14 2751 3560 108696638 108697445 0.000000e+00 791.0
27 TraesCS6A01G238100 chr6D 93.706 286 16 2 4451 4736 16142484 16142767 1.220000e-115 427.0
28 TraesCS6A01G238100 chr6D 88.081 344 35 5 2364 2703 108696292 108696633 2.050000e-108 403.0
29 TraesCS6A01G238100 chr1B 92.022 1078 57 13 1504 2572 529320310 529319253 0.000000e+00 1487.0
30 TraesCS6A01G238100 chr1B 92.202 872 62 6 3212 4079 214024824 214023955 0.000000e+00 1229.0
31 TraesCS6A01G238100 chr1B 91.590 868 67 6 3215 4079 529318942 529318078 0.000000e+00 1194.0
32 TraesCS6A01G238100 chr1B 91.506 777 40 9 1504 2272 214026423 214025665 0.000000e+00 1046.0
33 TraesCS6A01G238100 chr1B 94.108 628 32 4 2262 2888 214025479 214024856 0.000000e+00 950.0
34 TraesCS6A01G238100 chr1B 88.175 685 66 8 833 1507 529321035 529320356 0.000000e+00 802.0
35 TraesCS6A01G238100 chr1B 92.011 363 22 5 4099 4460 529318094 529317738 1.970000e-138 503.0
36 TraesCS6A01G238100 chr1B 92.222 360 20 7 4099 4453 653531165 653530809 1.970000e-138 503.0
37 TraesCS6A01G238100 chr1B 91.460 363 24 5 4099 4460 214023971 214023615 4.260000e-135 492.0
38 TraesCS6A01G238100 chr1B 92.226 283 18 2 2606 2888 529319255 529318977 9.550000e-107 398.0
39 TraesCS6A01G238100 chr1B 82.821 390 57 8 3229 3615 47913432 47913814 1.630000e-89 340.0
40 TraesCS6A01G238100 chr1B 88.889 81 6 3 4471 4551 653530203 653530126 3.900000e-16 97.1
41 TraesCS6A01G238100 chr1B 93.651 63 3 1 4585 4647 529317245 529317184 5.050000e-15 93.5
42 TraesCS6A01G238100 chr4A 86.983 822 84 17 2080 2890 562487128 562487937 0.000000e+00 904.0
43 TraesCS6A01G238100 chr4A 84.036 664 92 11 2894 3549 562490133 562490790 1.120000e-175 627.0
44 TraesCS6A01G238100 chr4A 89.951 408 36 5 1511 1913 562486725 562487132 5.430000e-144 521.0
45 TraesCS6A01G238100 chr4A 82.984 429 46 10 3210 3615 619157672 619158096 3.490000e-96 363.0
46 TraesCS6A01G238100 chr4A 82.065 184 27 6 1326 1505 562486494 562486675 8.210000e-33 152.0
47 TraesCS6A01G238100 chr4A 87.234 94 7 4 4646 4738 443842501 443842412 8.390000e-18 102.0
48 TraesCS6A01G238100 chr3B 88.186 601 57 11 2239 2830 754380835 754381430 0.000000e+00 704.0
49 TraesCS6A01G238100 chr5A 83.023 483 57 19 3154 3615 566632239 566631761 9.490000e-112 414.0
50 TraesCS6A01G238100 chr5A 89.683 126 13 0 1 126 644167398 644167523 1.360000e-35 161.0
51 TraesCS6A01G238100 chr3D 89.583 192 16 4 4451 4641 227174832 227174644 1.700000e-59 241.0
52 TraesCS6A01G238100 chr7B 95.333 150 6 1 1511 1659 511466053 511466202 2.200000e-58 237.0
53 TraesCS6A01G238100 chr7B 83.529 170 23 5 1326 1491 511465821 511465989 2.280000e-33 154.0
54 TraesCS6A01G238100 chr5B 95.333 150 6 1 1511 1659 528119325 528119474 2.200000e-58 237.0
55 TraesCS6A01G238100 chr5B 83.529 170 23 5 1326 1491 528119093 528119261 2.280000e-33 154.0
56 TraesCS6A01G238100 chr6B 85.465 172 18 5 3908 4078 566777986 566777821 6.300000e-39 172.0
57 TraesCS6A01G238100 chr7D 88.889 126 14 0 1 126 376085433 376085558 6.350000e-34 156.0
58 TraesCS6A01G238100 chr7D 85.950 121 14 2 684 804 128436350 128436233 4.980000e-25 126.0
59 TraesCS6A01G238100 chr7D 96.429 56 2 0 588 643 209591454 209591399 5.050000e-15 93.5
60 TraesCS6A01G238100 chr7A 89.908 109 8 3 681 789 175350133 175350238 2.300000e-28 137.0
61 TraesCS6A01G238100 chr7A 89.091 110 9 2 680 789 455706585 455706479 2.970000e-27 134.0
62 TraesCS6A01G238100 chr7A 100.000 56 0 0 588 643 222416193 222416138 2.330000e-18 104.0
63 TraesCS6A01G238100 chr2D 88.350 103 7 4 4637 4738 484038991 484039089 8.330000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G238100 chr6A 447830120 447834857 4737 False 4043.500000 7854 100.000000 1 4738 2 chr6A.!!$F2 4737
1 TraesCS6A01G238100 chr6A 16440819 16442510 1691 False 915.500000 1430 91.678500 3435 4738 2 chr6A.!!$F1 1303
2 TraesCS6A01G238100 chr3A 619775364 619778487 3123 True 1285.333333 3144 90.361667 1839 4643 3 chr3A.!!$R1 2804
3 TraesCS6A01G238100 chr2B 129325283 129329689 4406 True 947.900000 1980 91.759750 1504 4652 4 chr2B.!!$R3 3148
4 TraesCS6A01G238100 chr2A 191977135 191978444 1309 False 1897.000000 1897 92.744000 1907 3227 1 chr2A.!!$F1 1320
5 TraesCS6A01G238100 chr1A 132778593 132781999 3406 False 819.800000 1881 91.284600 1292 4638 5 chr1A.!!$F2 3346
6 TraesCS6A01G238100 chr6D 16141078 16142767 1689 False 1057.000000 1687 94.634000 3407 4736 2 chr6D.!!$F1 1329
7 TraesCS6A01G238100 chr6D 108696292 108697445 1153 False 597.000000 791 86.296500 2364 3560 2 chr6D.!!$F2 1196
8 TraesCS6A01G238100 chr1B 214023615 214026423 2808 True 929.250000 1229 92.319000 1504 4460 4 chr1B.!!$R1 2956
9 TraesCS6A01G238100 chr1B 529317184 529321035 3851 True 746.250000 1487 91.612500 833 4647 6 chr1B.!!$R2 3814
10 TraesCS6A01G238100 chr1B 653530126 653531165 1039 True 300.050000 503 90.555500 4099 4551 2 chr1B.!!$R3 452
11 TraesCS6A01G238100 chr4A 562486494 562490790 4296 False 551.000000 904 85.758750 1326 3549 4 chr4A.!!$F2 2223
12 TraesCS6A01G238100 chr3B 754380835 754381430 595 False 704.000000 704 88.186000 2239 2830 1 chr3B.!!$F1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 597 0.033920 GGGAAAGGGTACGACACGTT 59.966 55.0 1.53 0.00 41.54 3.99 F
704 705 0.036164 TTGACTCCATGGGTTCACCG 59.964 55.0 13.02 0.00 44.64 4.94 F
996 997 0.099082 GAGGTTACGAGGCTGAGACG 59.901 60.0 0.00 0.00 0.00 4.18 F
2410 2687 0.246086 CGGAGAAGAGAACAGCAGCT 59.754 55.0 0.00 0.00 0.00 4.24 F
3250 5734 0.179215 GAAATTCGTGCTGGCAGACG 60.179 55.0 20.86 22.91 36.91 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2170 0.888619 CTGTCAACACCTAGCCGAGA 59.111 55.000 0.00 0.0 0.00 4.04 R
2096 2174 1.160137 CTTGCTGTCAACACCTAGCC 58.840 55.000 0.00 0.0 35.36 3.93 R
2830 3114 0.522076 GAGAATCAGCAAAAGCGCGG 60.522 55.000 8.83 0.0 36.85 6.46 R
3618 6103 1.553248 TGGAAGAATGTACAGTCGGGG 59.447 52.381 16.90 0.0 0.00 5.73 R
4484 8821 2.032924 CCACTTCGACCTTGTTTGAACC 59.967 50.000 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.522731 CTCCGAGCTCCCCGACAG 61.523 72.222 8.47 0.00 0.00 3.51
59 60 4.785453 GCTCCCCGACAGCCCAAG 62.785 72.222 0.00 0.00 0.00 3.61
60 61 3.003173 CTCCCCGACAGCCCAAGA 61.003 66.667 0.00 0.00 0.00 3.02
61 62 3.316573 CTCCCCGACAGCCCAAGAC 62.317 68.421 0.00 0.00 0.00 3.01
62 63 4.410400 CCCCGACAGCCCAAGACC 62.410 72.222 0.00 0.00 0.00 3.85
63 64 4.410400 CCCGACAGCCCAAGACCC 62.410 72.222 0.00 0.00 0.00 4.46
64 65 4.760047 CCGACAGCCCAAGACCCG 62.760 72.222 0.00 0.00 0.00 5.28
65 66 3.691342 CGACAGCCCAAGACCCGA 61.691 66.667 0.00 0.00 0.00 5.14
66 67 2.266055 GACAGCCCAAGACCCGAG 59.734 66.667 0.00 0.00 0.00 4.63
67 68 2.203788 ACAGCCCAAGACCCGAGA 60.204 61.111 0.00 0.00 0.00 4.04
68 69 2.266055 CAGCCCAAGACCCGAGAC 59.734 66.667 0.00 0.00 0.00 3.36
69 70 3.003763 AGCCCAAGACCCGAGACC 61.004 66.667 0.00 0.00 0.00 3.85
70 71 3.319198 GCCCAAGACCCGAGACCA 61.319 66.667 0.00 0.00 0.00 4.02
71 72 2.663196 CCCAAGACCCGAGACCAC 59.337 66.667 0.00 0.00 0.00 4.16
72 73 2.663196 CCAAGACCCGAGACCACC 59.337 66.667 0.00 0.00 0.00 4.61
73 74 2.261671 CAAGACCCGAGACCACCG 59.738 66.667 0.00 0.00 0.00 4.94
74 75 2.995574 AAGACCCGAGACCACCGG 60.996 66.667 0.00 0.00 46.10 5.28
95 96 2.678934 CTCACCCTCCGGACGGAA 60.679 66.667 24.37 11.65 44.66 4.30
96 97 2.993264 TCACCCTCCGGACGGAAC 60.993 66.667 24.37 0.00 44.66 3.62
97 98 3.307906 CACCCTCCGGACGGAACA 61.308 66.667 24.37 0.00 44.66 3.18
98 99 2.995574 ACCCTCCGGACGGAACAG 60.996 66.667 24.37 8.58 44.66 3.16
99 100 3.771160 CCCTCCGGACGGAACAGG 61.771 72.222 13.83 12.08 44.66 4.00
100 101 3.771160 CCTCCGGACGGAACAGGG 61.771 72.222 14.98 8.51 44.66 4.45
101 102 2.678934 CTCCGGACGGAACAGGGA 60.679 66.667 14.98 0.00 44.66 4.20
102 103 2.678934 TCCGGACGGAACAGGGAG 60.679 66.667 11.57 0.00 42.05 4.30
103 104 3.771160 CCGGACGGAACAGGGAGG 61.771 72.222 4.40 0.00 37.50 4.30
104 105 2.678934 CGGACGGAACAGGGAGGA 60.679 66.667 0.00 0.00 0.00 3.71
105 106 2.280552 CGGACGGAACAGGGAGGAA 61.281 63.158 0.00 0.00 0.00 3.36
106 107 1.823169 CGGACGGAACAGGGAGGAAA 61.823 60.000 0.00 0.00 0.00 3.13
107 108 0.321387 GGACGGAACAGGGAGGAAAC 60.321 60.000 0.00 0.00 0.00 2.78
108 109 0.395312 GACGGAACAGGGAGGAAACA 59.605 55.000 0.00 0.00 0.00 2.83
109 110 0.396811 ACGGAACAGGGAGGAAACAG 59.603 55.000 0.00 0.00 0.00 3.16
110 111 0.685097 CGGAACAGGGAGGAAACAGA 59.315 55.000 0.00 0.00 0.00 3.41
111 112 1.279271 CGGAACAGGGAGGAAACAGAT 59.721 52.381 0.00 0.00 0.00 2.90
112 113 2.290323 CGGAACAGGGAGGAAACAGATT 60.290 50.000 0.00 0.00 0.00 2.40
113 114 3.767711 GGAACAGGGAGGAAACAGATTT 58.232 45.455 0.00 0.00 0.00 2.17
114 115 3.507622 GGAACAGGGAGGAAACAGATTTG 59.492 47.826 0.00 0.00 0.00 2.32
115 116 3.160679 ACAGGGAGGAAACAGATTTGG 57.839 47.619 0.00 0.00 0.00 3.28
116 117 2.225117 ACAGGGAGGAAACAGATTTGGG 60.225 50.000 0.00 0.00 0.00 4.12
117 118 2.041620 CAGGGAGGAAACAGATTTGGGA 59.958 50.000 0.00 0.00 0.00 4.37
118 119 2.041755 AGGGAGGAAACAGATTTGGGAC 59.958 50.000 0.00 0.00 0.00 4.46
119 120 2.041755 GGGAGGAAACAGATTTGGGACT 59.958 50.000 0.00 0.00 0.00 3.85
120 121 3.500471 GGGAGGAAACAGATTTGGGACTT 60.500 47.826 0.00 0.00 0.00 3.01
121 122 3.507622 GGAGGAAACAGATTTGGGACTTG 59.492 47.826 0.00 0.00 0.00 3.16
122 123 4.398319 GAGGAAACAGATTTGGGACTTGA 58.602 43.478 0.00 0.00 0.00 3.02
123 124 4.145052 AGGAAACAGATTTGGGACTTGAC 58.855 43.478 0.00 0.00 0.00 3.18
124 125 3.255888 GGAAACAGATTTGGGACTTGACC 59.744 47.826 0.00 0.00 0.00 4.02
502 503 2.047179 GCGAGGGAAGGTGGACAC 60.047 66.667 0.00 0.00 0.00 3.67
561 562 4.609018 CCCCGGAGTAGCGCATGG 62.609 72.222 11.47 0.99 0.00 3.66
573 574 2.825836 GCATGGCGTGAGAAGGGG 60.826 66.667 11.71 0.00 0.00 4.79
574 575 2.989639 CATGGCGTGAGAAGGGGA 59.010 61.111 0.00 0.00 0.00 4.81
575 576 1.299648 CATGGCGTGAGAAGGGGAA 59.700 57.895 0.00 0.00 0.00 3.97
576 577 0.745845 CATGGCGTGAGAAGGGGAAG 60.746 60.000 0.00 0.00 0.00 3.46
577 578 1.915078 ATGGCGTGAGAAGGGGAAGG 61.915 60.000 0.00 0.00 0.00 3.46
578 579 2.269241 GCGTGAGAAGGGGAAGGG 59.731 66.667 0.00 0.00 0.00 3.95
579 580 2.990479 CGTGAGAAGGGGAAGGGG 59.010 66.667 0.00 0.00 0.00 4.79
580 581 1.612442 CGTGAGAAGGGGAAGGGGA 60.612 63.158 0.00 0.00 0.00 4.81
581 582 1.198759 CGTGAGAAGGGGAAGGGGAA 61.199 60.000 0.00 0.00 0.00 3.97
582 583 1.073098 GTGAGAAGGGGAAGGGGAAA 58.927 55.000 0.00 0.00 0.00 3.13
583 584 1.004862 GTGAGAAGGGGAAGGGGAAAG 59.995 57.143 0.00 0.00 0.00 2.62
584 585 0.626382 GAGAAGGGGAAGGGGAAAGG 59.374 60.000 0.00 0.00 0.00 3.11
585 586 0.851332 AGAAGGGGAAGGGGAAAGGG 60.851 60.000 0.00 0.00 0.00 3.95
586 587 1.071344 AAGGGGAAGGGGAAAGGGT 60.071 57.895 0.00 0.00 0.00 4.34
587 588 0.200260 AAGGGGAAGGGGAAAGGGTA 59.800 55.000 0.00 0.00 0.00 3.69
588 589 0.551871 AGGGGAAGGGGAAAGGGTAC 60.552 60.000 0.00 0.00 0.00 3.34
589 590 1.605992 GGGAAGGGGAAAGGGTACG 59.394 63.158 0.00 0.00 0.00 3.67
590 591 0.911045 GGGAAGGGGAAAGGGTACGA 60.911 60.000 0.00 0.00 0.00 3.43
591 592 0.251354 GGAAGGGGAAAGGGTACGAC 59.749 60.000 0.00 0.00 0.00 4.34
592 593 0.978907 GAAGGGGAAAGGGTACGACA 59.021 55.000 0.00 0.00 0.00 4.35
593 594 0.689055 AAGGGGAAAGGGTACGACAC 59.311 55.000 0.00 0.00 0.00 3.67
594 595 1.079612 GGGGAAAGGGTACGACACG 60.080 63.158 0.00 0.00 0.00 4.49
595 596 1.667722 GGGAAAGGGTACGACACGT 59.332 57.895 1.91 1.91 44.35 4.49
596 597 0.033920 GGGAAAGGGTACGACACGTT 59.966 55.000 1.53 0.00 41.54 3.99
597 598 1.541015 GGGAAAGGGTACGACACGTTT 60.541 52.381 1.53 0.00 41.54 3.60
598 599 1.528161 GGAAAGGGTACGACACGTTTG 59.472 52.381 1.53 0.00 41.54 2.93
599 600 2.204237 GAAAGGGTACGACACGTTTGT 58.796 47.619 1.53 0.00 41.54 2.83
600 601 3.380142 GAAAGGGTACGACACGTTTGTA 58.620 45.455 1.53 0.00 41.54 2.41
601 602 2.422276 AGGGTACGACACGTTTGTAC 57.578 50.000 14.74 14.74 41.54 2.90
602 603 1.680735 AGGGTACGACACGTTTGTACA 59.319 47.619 20.30 0.00 41.54 2.90
603 604 1.786579 GGGTACGACACGTTTGTACAC 59.213 52.381 20.30 16.44 41.54 2.90
604 605 1.447938 GGTACGACACGTTTGTACACG 59.552 52.381 20.30 0.00 46.04 4.49
605 606 1.119635 TACGACACGTTTGTACACGC 58.880 50.000 5.84 0.00 44.37 5.34
606 607 0.526096 ACGACACGTTTGTACACGCT 60.526 50.000 5.84 0.00 44.37 5.07
607 608 1.268488 ACGACACGTTTGTACACGCTA 60.268 47.619 5.84 0.00 44.37 4.26
608 609 1.780292 CGACACGTTTGTACACGCTAA 59.220 47.619 5.84 0.00 44.37 3.09
609 610 2.407609 CGACACGTTTGTACACGCTAAC 60.408 50.000 5.84 2.36 44.37 2.34
610 611 1.518102 ACACGTTTGTACACGCTAACG 59.482 47.619 22.49 22.49 46.85 3.18
611 612 1.130955 ACGTTTGTACACGCTAACGG 58.869 50.000 25.81 13.46 46.18 4.44
612 613 0.179268 CGTTTGTACACGCTAACGGC 60.179 55.000 18.41 0.00 46.04 5.68
613 614 0.164432 GTTTGTACACGCTAACGGCC 59.836 55.000 0.00 0.00 46.04 6.13
614 615 0.249784 TTTGTACACGCTAACGGCCA 60.250 50.000 2.24 0.00 46.04 5.36
615 616 0.668096 TTGTACACGCTAACGGCCAG 60.668 55.000 2.24 0.00 46.04 4.85
616 617 1.808390 GTACACGCTAACGGCCAGG 60.808 63.158 2.24 0.00 46.04 4.45
617 618 2.277591 TACACGCTAACGGCCAGGT 61.278 57.895 2.24 0.00 46.04 4.00
618 619 0.964860 TACACGCTAACGGCCAGGTA 60.965 55.000 2.24 0.00 46.04 3.08
619 620 1.808390 CACGCTAACGGCCAGGTAC 60.808 63.158 2.24 0.00 46.04 3.34
620 621 2.581409 CGCTAACGGCCAGGTACG 60.581 66.667 2.24 4.38 37.74 3.67
621 622 2.202837 GCTAACGGCCAGGTACGG 60.203 66.667 2.24 0.00 34.27 4.02
628 629 2.357760 GCCAGGTACGGCGTTTGA 60.358 61.111 21.24 0.00 43.52 2.69
629 630 2.674084 GCCAGGTACGGCGTTTGAC 61.674 63.158 21.24 10.84 43.52 3.18
630 631 1.301087 CCAGGTACGGCGTTTGACA 60.301 57.895 21.24 0.00 0.00 3.58
631 632 0.881159 CCAGGTACGGCGTTTGACAA 60.881 55.000 21.24 0.00 0.00 3.18
632 633 0.233848 CAGGTACGGCGTTTGACAAC 59.766 55.000 21.24 9.11 0.00 3.32
642 643 2.611974 GTTTGACAACGCCGATCATT 57.388 45.000 0.00 0.00 0.00 2.57
643 644 3.733024 GTTTGACAACGCCGATCATTA 57.267 42.857 0.00 0.00 0.00 1.90
644 645 4.273005 GTTTGACAACGCCGATCATTAT 57.727 40.909 0.00 0.00 0.00 1.28
645 646 4.271687 GTTTGACAACGCCGATCATTATC 58.728 43.478 0.00 0.00 0.00 1.75
646 647 2.479837 TGACAACGCCGATCATTATCC 58.520 47.619 0.00 0.00 0.00 2.59
647 648 2.102420 TGACAACGCCGATCATTATCCT 59.898 45.455 0.00 0.00 0.00 3.24
648 649 2.476619 GACAACGCCGATCATTATCCTG 59.523 50.000 0.00 0.00 0.00 3.86
649 650 1.195448 CAACGCCGATCATTATCCTGC 59.805 52.381 0.00 0.00 0.00 4.85
650 651 0.320771 ACGCCGATCATTATCCTGCC 60.321 55.000 0.00 0.00 0.00 4.85
651 652 0.320683 CGCCGATCATTATCCTGCCA 60.321 55.000 0.00 0.00 0.00 4.92
652 653 1.877680 CGCCGATCATTATCCTGCCAA 60.878 52.381 0.00 0.00 0.00 4.52
653 654 1.537202 GCCGATCATTATCCTGCCAAC 59.463 52.381 0.00 0.00 0.00 3.77
654 655 2.154462 CCGATCATTATCCTGCCAACC 58.846 52.381 0.00 0.00 0.00 3.77
655 656 1.800586 CGATCATTATCCTGCCAACCG 59.199 52.381 0.00 0.00 0.00 4.44
656 657 2.547855 CGATCATTATCCTGCCAACCGA 60.548 50.000 0.00 0.00 0.00 4.69
657 658 2.620251 TCATTATCCTGCCAACCGAG 57.380 50.000 0.00 0.00 0.00 4.63
658 659 2.115427 TCATTATCCTGCCAACCGAGA 58.885 47.619 0.00 0.00 0.00 4.04
659 660 2.503765 TCATTATCCTGCCAACCGAGAA 59.496 45.455 0.00 0.00 0.00 2.87
660 661 3.136443 TCATTATCCTGCCAACCGAGAAT 59.864 43.478 0.00 0.00 0.00 2.40
661 662 3.644966 TTATCCTGCCAACCGAGAATT 57.355 42.857 0.00 0.00 0.00 2.17
662 663 4.764050 TTATCCTGCCAACCGAGAATTA 57.236 40.909 0.00 0.00 0.00 1.40
663 664 2.396590 TCCTGCCAACCGAGAATTAC 57.603 50.000 0.00 0.00 0.00 1.89
664 665 1.006832 CCTGCCAACCGAGAATTACG 58.993 55.000 0.00 0.00 0.00 3.18
665 666 0.373716 CTGCCAACCGAGAATTACGC 59.626 55.000 0.00 0.00 0.00 4.42
666 667 0.036765 TGCCAACCGAGAATTACGCT 60.037 50.000 0.00 0.00 0.00 5.07
667 668 1.084289 GCCAACCGAGAATTACGCTT 58.916 50.000 0.00 0.00 0.00 4.68
668 669 1.467342 GCCAACCGAGAATTACGCTTT 59.533 47.619 0.00 0.00 0.00 3.51
669 670 2.475685 GCCAACCGAGAATTACGCTTTC 60.476 50.000 0.00 0.00 0.00 2.62
670 671 3.000727 CCAACCGAGAATTACGCTTTCT 58.999 45.455 0.00 0.00 36.16 2.52
671 672 3.435671 CCAACCGAGAATTACGCTTTCTT 59.564 43.478 0.00 0.00 33.65 2.52
672 673 4.435651 CCAACCGAGAATTACGCTTTCTTC 60.436 45.833 0.00 0.00 33.65 2.87
673 674 4.189639 ACCGAGAATTACGCTTTCTTCT 57.810 40.909 0.00 0.00 33.65 2.85
674 675 4.566987 ACCGAGAATTACGCTTTCTTCTT 58.433 39.130 0.00 0.00 33.65 2.52
675 676 5.717119 ACCGAGAATTACGCTTTCTTCTTA 58.283 37.500 0.00 0.00 33.65 2.10
676 677 6.338937 ACCGAGAATTACGCTTTCTTCTTAT 58.661 36.000 0.00 0.00 33.65 1.73
677 678 6.255887 ACCGAGAATTACGCTTTCTTCTTATG 59.744 38.462 0.00 0.00 33.65 1.90
678 679 6.255887 CCGAGAATTACGCTTTCTTCTTATGT 59.744 38.462 0.00 0.00 33.65 2.29
679 680 7.201530 CCGAGAATTACGCTTTCTTCTTATGTT 60.202 37.037 0.00 0.00 33.65 2.71
680 681 8.804743 CGAGAATTACGCTTTCTTCTTATGTTA 58.195 33.333 0.00 0.00 33.65 2.41
681 682 9.903185 GAGAATTACGCTTTCTTCTTATGTTAC 57.097 33.333 0.00 0.00 33.65 2.50
682 683 8.592998 AGAATTACGCTTTCTTCTTATGTTACG 58.407 33.333 0.00 0.00 29.12 3.18
683 684 6.636666 TTACGCTTTCTTCTTATGTTACGG 57.363 37.500 0.00 0.00 0.00 4.02
684 685 4.813027 ACGCTTTCTTCTTATGTTACGGA 58.187 39.130 0.00 0.00 0.00 4.69
685 686 5.416947 ACGCTTTCTTCTTATGTTACGGAT 58.583 37.500 0.00 0.00 0.00 4.18
686 687 5.873164 ACGCTTTCTTCTTATGTTACGGATT 59.127 36.000 0.00 0.00 0.00 3.01
687 688 6.183360 ACGCTTTCTTCTTATGTTACGGATTG 60.183 38.462 0.00 0.00 0.00 2.67
688 689 6.035650 CGCTTTCTTCTTATGTTACGGATTGA 59.964 38.462 0.00 0.00 0.00 2.57
689 690 7.180748 GCTTTCTTCTTATGTTACGGATTGAC 58.819 38.462 0.00 0.00 0.00 3.18
690 691 7.064728 GCTTTCTTCTTATGTTACGGATTGACT 59.935 37.037 0.00 0.00 0.00 3.41
691 692 8.475331 TTTCTTCTTATGTTACGGATTGACTC 57.525 34.615 0.00 0.00 0.00 3.36
692 693 6.570692 TCTTCTTATGTTACGGATTGACTCC 58.429 40.000 0.00 0.00 41.07 3.85
693 694 5.925506 TCTTATGTTACGGATTGACTCCA 57.074 39.130 0.00 0.00 45.24 3.86
694 695 6.479972 TCTTATGTTACGGATTGACTCCAT 57.520 37.500 0.00 0.00 45.24 3.41
695 696 6.280643 TCTTATGTTACGGATTGACTCCATG 58.719 40.000 0.00 0.00 45.24 3.66
696 697 3.260475 TGTTACGGATTGACTCCATGG 57.740 47.619 4.97 4.97 45.24 3.66
697 698 2.093181 TGTTACGGATTGACTCCATGGG 60.093 50.000 13.02 5.22 45.24 4.00
698 699 1.874129 TACGGATTGACTCCATGGGT 58.126 50.000 13.02 8.85 45.24 4.51
699 700 0.991920 ACGGATTGACTCCATGGGTT 59.008 50.000 13.02 0.00 45.24 4.11
700 701 1.065418 ACGGATTGACTCCATGGGTTC 60.065 52.381 13.02 9.20 45.24 3.62
701 702 1.065491 CGGATTGACTCCATGGGTTCA 60.065 52.381 13.02 11.87 45.24 3.18
702 703 2.369394 GGATTGACTCCATGGGTTCAC 58.631 52.381 13.02 4.03 44.26 3.18
703 704 2.369394 GATTGACTCCATGGGTTCACC 58.631 52.381 13.02 5.76 40.81 4.02
704 705 0.036164 TTGACTCCATGGGTTCACCG 59.964 55.000 13.02 0.00 44.64 4.94
705 706 1.125093 TGACTCCATGGGTTCACCGT 61.125 55.000 13.02 0.00 44.64 4.83
706 707 0.391263 GACTCCATGGGTTCACCGTC 60.391 60.000 13.02 4.11 44.64 4.79
707 708 1.125093 ACTCCATGGGTTCACCGTCA 61.125 55.000 13.02 0.00 44.64 4.35
708 709 0.673644 CTCCATGGGTTCACCGTCAC 60.674 60.000 13.02 0.00 44.64 3.67
709 710 1.072332 CCATGGGTTCACCGTCACA 59.928 57.895 2.85 0.00 44.64 3.58
710 711 0.536233 CCATGGGTTCACCGTCACAA 60.536 55.000 2.85 0.00 44.64 3.33
711 712 1.313772 CATGGGTTCACCGTCACAAA 58.686 50.000 0.00 0.00 44.64 2.83
712 713 1.885887 CATGGGTTCACCGTCACAAAT 59.114 47.619 0.00 0.00 44.64 2.32
713 714 2.932855 TGGGTTCACCGTCACAAATA 57.067 45.000 0.00 0.00 44.64 1.40
714 715 2.496111 TGGGTTCACCGTCACAAATAC 58.504 47.619 0.00 0.00 44.64 1.89
715 716 1.461897 GGGTTCACCGTCACAAATACG 59.538 52.381 0.00 0.00 40.01 3.06
716 717 2.137523 GGTTCACCGTCACAAATACGT 58.862 47.619 0.00 0.00 38.67 3.57
717 718 2.545106 GGTTCACCGTCACAAATACGTT 59.455 45.455 0.00 0.00 38.67 3.99
718 719 3.002553 GGTTCACCGTCACAAATACGTTT 59.997 43.478 0.00 0.00 38.67 3.60
719 720 4.496175 GGTTCACCGTCACAAATACGTTTT 60.496 41.667 0.00 0.00 38.67 2.43
720 721 4.879104 TCACCGTCACAAATACGTTTTT 57.121 36.364 0.00 0.00 38.67 1.94
782 783 9.621629 TGGACAAAATCATAATATAAACGAGGT 57.378 29.630 0.00 0.00 0.00 3.85
783 784 9.878599 GGACAAAATCATAATATAAACGAGGTG 57.121 33.333 0.00 0.00 0.00 4.00
784 785 9.878599 GACAAAATCATAATATAAACGAGGTGG 57.121 33.333 0.00 0.00 0.00 4.61
785 786 9.403583 ACAAAATCATAATATAAACGAGGTGGT 57.596 29.630 0.00 0.00 0.00 4.16
789 790 9.706691 AATCATAATATAAACGAGGTGGTACTG 57.293 33.333 0.00 0.00 0.00 2.74
790 791 8.467963 TCATAATATAAACGAGGTGGTACTGA 57.532 34.615 0.00 0.00 0.00 3.41
791 792 8.355169 TCATAATATAAACGAGGTGGTACTGAC 58.645 37.037 0.00 0.00 0.00 3.51
803 804 1.475682 GGTACTGACCTCCCAAGTACG 59.524 57.143 6.22 0.00 43.16 3.67
804 805 1.475682 GTACTGACCTCCCAAGTACGG 59.524 57.143 0.00 0.00 0.00 4.02
805 806 0.178941 ACTGACCTCCCAAGTACGGT 60.179 55.000 0.00 0.00 0.00 4.83
806 807 0.974383 CTGACCTCCCAAGTACGGTT 59.026 55.000 0.00 0.00 0.00 4.44
807 808 0.682852 TGACCTCCCAAGTACGGTTG 59.317 55.000 0.00 0.00 0.00 3.77
808 809 0.683412 GACCTCCCAAGTACGGTTGT 59.317 55.000 0.00 0.00 0.00 3.32
809 810 0.683412 ACCTCCCAAGTACGGTTGTC 59.317 55.000 0.00 0.00 0.00 3.18
810 811 0.974383 CCTCCCAAGTACGGTTGTCT 59.026 55.000 0.00 0.00 0.00 3.41
811 812 1.067071 CCTCCCAAGTACGGTTGTCTC 60.067 57.143 0.00 0.00 0.00 3.36
812 813 0.971386 TCCCAAGTACGGTTGTCTCC 59.029 55.000 0.00 0.00 0.00 3.71
813 814 0.974383 CCCAAGTACGGTTGTCTCCT 59.026 55.000 0.00 0.00 0.00 3.69
814 815 1.067071 CCCAAGTACGGTTGTCTCCTC 60.067 57.143 0.00 0.00 0.00 3.71
815 816 1.893801 CCAAGTACGGTTGTCTCCTCT 59.106 52.381 0.00 0.00 0.00 3.69
816 817 3.087031 CCAAGTACGGTTGTCTCCTCTA 58.913 50.000 0.00 0.00 0.00 2.43
817 818 3.700038 CCAAGTACGGTTGTCTCCTCTAT 59.300 47.826 0.00 0.00 0.00 1.98
818 819 4.440250 CCAAGTACGGTTGTCTCCTCTATG 60.440 50.000 0.00 0.00 0.00 2.23
819 820 2.688958 AGTACGGTTGTCTCCTCTATGC 59.311 50.000 0.00 0.00 0.00 3.14
820 821 1.853963 ACGGTTGTCTCCTCTATGCT 58.146 50.000 0.00 0.00 0.00 3.79
821 822 1.751924 ACGGTTGTCTCCTCTATGCTC 59.248 52.381 0.00 0.00 0.00 4.26
822 823 2.028130 CGGTTGTCTCCTCTATGCTCT 58.972 52.381 0.00 0.00 0.00 4.09
823 824 3.215151 CGGTTGTCTCCTCTATGCTCTA 58.785 50.000 0.00 0.00 0.00 2.43
824 825 3.823873 CGGTTGTCTCCTCTATGCTCTAT 59.176 47.826 0.00 0.00 0.00 1.98
825 826 4.083003 CGGTTGTCTCCTCTATGCTCTATC 60.083 50.000 0.00 0.00 0.00 2.08
826 827 4.219725 GGTTGTCTCCTCTATGCTCTATCC 59.780 50.000 0.00 0.00 0.00 2.59
827 828 5.076873 GTTGTCTCCTCTATGCTCTATCCT 58.923 45.833 0.00 0.00 0.00 3.24
828 829 4.917385 TGTCTCCTCTATGCTCTATCCTC 58.083 47.826 0.00 0.00 0.00 3.71
829 830 4.601420 TGTCTCCTCTATGCTCTATCCTCT 59.399 45.833 0.00 0.00 0.00 3.69
830 831 5.186198 GTCTCCTCTATGCTCTATCCTCTC 58.814 50.000 0.00 0.00 0.00 3.20
831 832 4.227300 TCTCCTCTATGCTCTATCCTCTCC 59.773 50.000 0.00 0.00 0.00 3.71
841 842 0.179026 TATCCTCTCCTCACGACCGG 60.179 60.000 0.00 0.00 0.00 5.28
845 846 1.448922 CTCTCCTCACGACCGGATCC 61.449 65.000 9.46 0.00 0.00 3.36
880 881 4.830765 TACAGCATGCCGTCGCCC 62.831 66.667 15.66 0.00 42.53 6.13
883 884 3.781307 AGCATGCCGTCGCCCTAA 61.781 61.111 15.66 0.00 0.00 2.69
885 886 3.261951 CATGCCGTCGCCCTAACG 61.262 66.667 0.00 0.00 39.78 3.18
958 959 3.417275 CTGCCTCCGTCTTCGCGAT 62.417 63.158 10.88 0.00 35.54 4.58
964 965 2.956964 CGTCTTCGCGATGCTCCC 60.957 66.667 10.88 0.42 0.00 4.30
972 973 4.161295 CGATGCTCCCGCCCAAGA 62.161 66.667 0.00 0.00 34.43 3.02
974 975 1.754745 GATGCTCCCGCCCAAGATA 59.245 57.895 0.00 0.00 34.43 1.98
976 977 0.550914 ATGCTCCCGCCCAAGATAAA 59.449 50.000 0.00 0.00 34.43 1.40
977 978 0.107214 TGCTCCCGCCCAAGATAAAG 60.107 55.000 0.00 0.00 34.43 1.85
978 979 0.180406 GCTCCCGCCCAAGATAAAGA 59.820 55.000 0.00 0.00 0.00 2.52
979 980 1.811941 GCTCCCGCCCAAGATAAAGAG 60.812 57.143 0.00 0.00 0.00 2.85
980 981 0.837272 TCCCGCCCAAGATAAAGAGG 59.163 55.000 0.00 0.00 0.00 3.69
981 982 0.546598 CCCGCCCAAGATAAAGAGGT 59.453 55.000 0.00 0.00 0.00 3.85
982 983 1.064685 CCCGCCCAAGATAAAGAGGTT 60.065 52.381 0.00 0.00 0.00 3.50
984 985 3.203716 CCGCCCAAGATAAAGAGGTTAC 58.796 50.000 0.00 0.00 0.00 2.50
985 986 2.864343 CGCCCAAGATAAAGAGGTTACG 59.136 50.000 0.00 0.00 0.00 3.18
986 987 3.429822 CGCCCAAGATAAAGAGGTTACGA 60.430 47.826 0.00 0.00 0.00 3.43
987 988 4.120589 GCCCAAGATAAAGAGGTTACGAG 58.879 47.826 0.00 0.00 0.00 4.18
988 989 4.694339 CCCAAGATAAAGAGGTTACGAGG 58.306 47.826 0.00 0.00 0.00 4.63
990 991 4.141914 CCAAGATAAAGAGGTTACGAGGCT 60.142 45.833 0.00 0.00 0.00 4.58
991 992 4.657436 AGATAAAGAGGTTACGAGGCTG 57.343 45.455 0.00 0.00 0.00 4.85
992 993 4.279145 AGATAAAGAGGTTACGAGGCTGA 58.721 43.478 0.00 0.00 0.00 4.26
993 994 4.339814 AGATAAAGAGGTTACGAGGCTGAG 59.660 45.833 0.00 0.00 0.00 3.35
994 995 2.217510 AAGAGGTTACGAGGCTGAGA 57.782 50.000 0.00 0.00 0.00 3.27
995 996 1.465794 AGAGGTTACGAGGCTGAGAC 58.534 55.000 0.00 0.00 0.00 3.36
996 997 0.099082 GAGGTTACGAGGCTGAGACG 59.901 60.000 0.00 0.00 0.00 4.18
997 998 1.516603 GGTTACGAGGCTGAGACGC 60.517 63.158 0.00 0.00 0.00 5.19
1041 1048 1.925455 CTTCCCAGCCTCCCTTCCA 60.925 63.158 0.00 0.00 0.00 3.53
1048 1055 2.606587 GCCTCCCTTCCAAGCTCCA 61.607 63.158 0.00 0.00 0.00 3.86
1073 1080 1.202663 CCTGATGGCTGATCTGACCTG 60.203 57.143 2.59 0.00 32.94 4.00
1088 1095 2.809601 CTGTGGACGGTGCTACGC 60.810 66.667 0.31 0.00 37.37 4.42
1152 1159 1.294780 CCTATGGGCTCGCCATCTC 59.705 63.158 10.51 0.00 37.98 2.75
1167 1174 3.592814 CTCGCGCTCCCCGTCATA 61.593 66.667 5.56 0.00 39.71 2.15
1182 1189 2.474816 GTCATAAGACTCGTGATGGGC 58.525 52.381 0.00 0.00 41.64 5.36
1195 1202 3.137385 ATGGGCGATGGGGTGGATG 62.137 63.158 0.00 0.00 0.00 3.51
1196 1203 3.488569 GGGCGATGGGGTGGATGA 61.489 66.667 0.00 0.00 0.00 2.92
1245 1252 3.728385 AGGATTTGGAGAGAAGGTTGG 57.272 47.619 0.00 0.00 0.00 3.77
1253 1260 1.223487 GAGAAGGTTGGGCGGCATA 59.777 57.895 12.47 0.00 0.00 3.14
1261 1268 2.045340 GGGCGGCATACAGGTGTT 60.045 61.111 12.47 0.00 0.00 3.32
1308 1315 5.020132 TGGTTATGGGTGGAATTTACCTTG 58.980 41.667 11.28 0.00 38.30 3.61
1367 1374 7.762615 CCTTACGTGAGGTCAATTTTGTAGATA 59.237 37.037 17.94 0.00 31.89 1.98
1372 1379 8.504005 CGTGAGGTCAATTTTGTAGATAGTTTT 58.496 33.333 0.00 0.00 0.00 2.43
1395 1403 2.991250 TGTAGCAGAAAGAGGCCATTC 58.009 47.619 5.01 6.68 0.00 2.67
1492 1504 2.039624 AGGCAGTGGACGGGAGAT 59.960 61.111 0.00 0.00 0.00 2.75
1500 1512 3.133003 CAGTGGACGGGAGATATTCAACT 59.867 47.826 0.00 0.00 0.00 3.16
1563 1624 6.676990 ATATGATTAGCTGGTGACATGAGA 57.323 37.500 0.00 0.00 41.51 3.27
1709 1771 3.664107 TCTTGCTGCAACTTGGTAGTAG 58.336 45.455 11.69 0.00 33.17 2.57
1738 1801 8.821686 ACCATTTTTGGTGATCATATACAGAA 57.178 30.769 0.00 0.00 41.33 3.02
1819 1882 8.392372 AGAAAAAGGTAGATAGTTTGAACACC 57.608 34.615 0.00 0.00 0.00 4.16
1833 1896 5.766150 TTGAACACCTGTTTATTCACCTG 57.234 39.130 0.00 0.00 38.56 4.00
1863 1940 5.491982 ACACGAAGAAAGAGCAGGATAAAT 58.508 37.500 0.00 0.00 0.00 1.40
1971 2048 6.199376 TGGGTCACTGATAGAAGTATTGGTA 58.801 40.000 0.00 0.00 0.00 3.25
1972 2049 6.097839 TGGGTCACTGATAGAAGTATTGGTAC 59.902 42.308 0.00 0.00 0.00 3.34
1974 2051 6.979238 GGTCACTGATAGAAGTATTGGTACAC 59.021 42.308 0.00 0.00 39.29 2.90
1976 2053 8.033038 GTCACTGATAGAAGTATTGGTACACAA 58.967 37.037 0.00 0.00 44.54 3.33
1996 2073 8.770438 ACACAATGAACTTTTTGTACACAATT 57.230 26.923 0.00 0.00 34.42 2.32
2084 2162 7.751047 TCTCGAATTTCATTTTAGGTCTACG 57.249 36.000 0.00 0.00 0.00 3.51
2112 2190 0.737715 CTCGGCTAGGTGTTGACAGC 60.738 60.000 5.23 5.23 44.12 4.40
2134 2213 9.013229 ACAGCAAGAAACACTTCAAATATATGA 57.987 29.630 0.00 0.00 36.61 2.15
2260 2340 6.505272 AGAGATAGTTATACACTTCGTTGCC 58.495 40.000 0.00 0.00 36.88 4.52
2272 2352 5.163893 ACACTTCGTTGCCGTTTTATATCTG 60.164 40.000 0.00 0.00 35.01 2.90
2276 2356 5.172934 TCGTTGCCGTTTTATATCTGAGTT 58.827 37.500 0.00 0.00 35.01 3.01
2278 2358 6.812656 TCGTTGCCGTTTTATATCTGAGTTAA 59.187 34.615 0.00 0.00 35.01 2.01
2334 2611 1.745864 CTTGCTGAGGCTGCTCTGG 60.746 63.158 0.00 0.00 39.59 3.86
2410 2687 0.246086 CGGAGAAGAGAACAGCAGCT 59.754 55.000 0.00 0.00 0.00 4.24
2420 2697 4.039245 AGAGAACAGCAGCTTGTTACTACA 59.961 41.667 3.78 0.00 41.15 2.74
2424 2701 5.661056 ACAGCAGCTTGTTACTACAGATA 57.339 39.130 0.00 0.00 35.28 1.98
2756 3040 8.831715 TGTAGTACATAGCCACATATGATTTG 57.168 34.615 10.38 0.00 36.76 2.32
2830 3114 5.600908 AACGTTTATGGTATGTGTGTGTC 57.399 39.130 0.00 0.00 0.00 3.67
2852 3136 1.069022 GCGCTTTTGCTGATTCTCACA 60.069 47.619 0.00 0.00 44.80 3.58
2900 5376 8.164733 TGGTTCTTAGTTATGGTCATTTGGTAA 58.835 33.333 0.00 0.00 0.00 2.85
2908 5385 8.865090 AGTTATGGTCATTTGGTAATTTTGACA 58.135 29.630 0.00 0.00 38.71 3.58
2909 5386 9.482627 GTTATGGTCATTTGGTAATTTTGACAA 57.517 29.630 0.00 0.00 38.71 3.18
2975 5452 2.826488 AGTTCTGGCTGTGACTAGGAT 58.174 47.619 0.00 0.00 0.00 3.24
3017 5494 8.298854 CAAATCATGTGTAGAAAACTTGGATCA 58.701 33.333 0.00 0.00 0.00 2.92
3100 5580 6.294675 CCAGATGCTATTGGAAAAGTTGTTGA 60.295 38.462 0.00 0.00 36.55 3.18
3102 5582 8.461222 CAGATGCTATTGGAAAAGTTGTTGATA 58.539 33.333 0.00 0.00 0.00 2.15
3250 5734 0.179215 GAAATTCGTGCTGGCAGACG 60.179 55.000 20.86 22.91 36.91 4.18
3294 5778 9.831737 GATCATTATGTGAAGTATGCCAATAAC 57.168 33.333 0.00 0.00 40.97 1.89
3305 5789 5.772672 AGTATGCCAATAACAAGGACAACAA 59.227 36.000 0.00 0.00 0.00 2.83
3310 5794 5.451242 GCCAATAACAAGGACAACAACAAGA 60.451 40.000 0.00 0.00 0.00 3.02
3350 5834 3.370953 CCAACTTCCCTGGAGGTATTCTG 60.371 52.174 0.93 0.00 35.85 3.02
3364 5848 6.313519 AGGTATTCTGCCTCAAATCTTACA 57.686 37.500 0.00 0.00 0.00 2.41
3391 5875 8.620416 GCAACCTTTTATTCACATTTCCTTTTT 58.380 29.630 0.00 0.00 0.00 1.94
3615 6100 7.593273 TCTGCATTATTTTCAACCGTTACTTTG 59.407 33.333 0.00 0.00 0.00 2.77
3618 6103 8.632551 GCATTATTTTCAACCGTTACTTTGTAC 58.367 33.333 0.00 0.00 0.00 2.90
3633 6120 3.598019 TTGTACCCCGACTGTACATTC 57.402 47.619 10.98 0.00 45.67 2.67
3762 6249 7.455641 TTTTTCTGTTACAAAGTGAGGTGAA 57.544 32.000 0.00 0.00 0.00 3.18
3897 6415 1.734047 CGTGCCAGCAGTAAGACTCTC 60.734 57.143 0.00 0.00 0.00 3.20
3900 6418 3.383185 GTGCCAGCAGTAAGACTCTCTAT 59.617 47.826 0.00 0.00 0.00 1.98
3958 6476 5.123027 CAGAAGGTGGAATCTTGCTTCTTAC 59.877 44.000 0.00 0.00 0.00 2.34
3959 6481 3.956744 AGGTGGAATCTTGCTTCTTACC 58.043 45.455 0.00 0.00 34.97 2.85
4149 6674 2.689983 CCACAAGGTTCTCTTTGCAACT 59.310 45.455 0.00 0.00 34.62 3.16
4154 6679 4.639135 AGGTTCTCTTTGCAACTTTGAC 57.361 40.909 0.00 0.00 0.00 3.18
4178 6703 5.238650 CCTAACATTTTAGGCAGGATTACCG 59.761 44.000 4.74 0.00 46.39 4.02
4217 6742 7.458397 ACATCATTACAACTTACCAGGAGAAA 58.542 34.615 0.00 0.00 0.00 2.52
4304 6835 8.573035 GTGATTGTTAAGGGAACTGTTTAATGA 58.427 33.333 0.00 0.00 42.68 2.57
4385 6916 7.946655 TCTAATTATACAGACAAGCCAATCG 57.053 36.000 0.00 0.00 0.00 3.34
4453 6985 0.476808 TGACCCCCATACAACCTGGT 60.477 55.000 0.00 0.00 31.44 4.00
4526 8863 8.477419 AGTGGTTTTATGAAGAATTTTGAGGA 57.523 30.769 0.00 0.00 0.00 3.71
4616 8985 5.007921 GTCAAACTTATTGTGTACCCGTTGT 59.992 40.000 0.00 0.00 0.00 3.32
4632 9001 3.428282 GTAACGCACGGGCCCTTG 61.428 66.667 23.83 23.83 36.38 3.61
4668 9037 9.904198 TTGATAATGTTCCTAATGACTCATTCA 57.096 29.630 7.57 0.61 39.11 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.522731 CTGTCGGGGAGCTCGGAG 61.523 72.222 7.83 0.00 0.00 4.63
42 43 4.785453 CTTGGGCTGTCGGGGAGC 62.785 72.222 0.00 0.00 35.57 4.70
43 44 3.003173 TCTTGGGCTGTCGGGGAG 61.003 66.667 0.00 0.00 0.00 4.30
44 45 3.319198 GTCTTGGGCTGTCGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
45 46 4.410400 GGTCTTGGGCTGTCGGGG 62.410 72.222 0.00 0.00 0.00 5.73
46 47 4.410400 GGGTCTTGGGCTGTCGGG 62.410 72.222 0.00 0.00 0.00 5.14
47 48 4.760047 CGGGTCTTGGGCTGTCGG 62.760 72.222 0.00 0.00 0.00 4.79
48 49 3.649277 CTCGGGTCTTGGGCTGTCG 62.649 68.421 0.00 0.00 0.00 4.35
49 50 2.266055 CTCGGGTCTTGGGCTGTC 59.734 66.667 0.00 0.00 0.00 3.51
50 51 2.203788 TCTCGGGTCTTGGGCTGT 60.204 61.111 0.00 0.00 0.00 4.40
51 52 2.266055 GTCTCGGGTCTTGGGCTG 59.734 66.667 0.00 0.00 0.00 4.85
52 53 3.003763 GGTCTCGGGTCTTGGGCT 61.004 66.667 0.00 0.00 0.00 5.19
53 54 3.319198 TGGTCTCGGGTCTTGGGC 61.319 66.667 0.00 0.00 0.00 5.36
54 55 2.663196 GTGGTCTCGGGTCTTGGG 59.337 66.667 0.00 0.00 0.00 4.12
55 56 2.663196 GGTGGTCTCGGGTCTTGG 59.337 66.667 0.00 0.00 0.00 3.61
56 57 2.261671 CGGTGGTCTCGGGTCTTG 59.738 66.667 0.00 0.00 0.00 3.02
57 58 2.995574 CCGGTGGTCTCGGGTCTT 60.996 66.667 0.00 0.00 43.45 3.01
84 85 2.678934 TCCCTGTTCCGTCCGGAG 60.679 66.667 3.06 0.00 46.06 4.63
85 86 2.678934 CTCCCTGTTCCGTCCGGA 60.679 66.667 0.00 0.00 43.52 5.14
86 87 3.771160 CCTCCCTGTTCCGTCCGG 61.771 72.222 0.00 0.00 0.00 5.14
87 88 1.823169 TTTCCTCCCTGTTCCGTCCG 61.823 60.000 0.00 0.00 0.00 4.79
88 89 0.321387 GTTTCCTCCCTGTTCCGTCC 60.321 60.000 0.00 0.00 0.00 4.79
89 90 0.395312 TGTTTCCTCCCTGTTCCGTC 59.605 55.000 0.00 0.00 0.00 4.79
90 91 0.396811 CTGTTTCCTCCCTGTTCCGT 59.603 55.000 0.00 0.00 0.00 4.69
91 92 0.685097 TCTGTTTCCTCCCTGTTCCG 59.315 55.000 0.00 0.00 0.00 4.30
92 93 3.441500 AATCTGTTTCCTCCCTGTTCC 57.558 47.619 0.00 0.00 0.00 3.62
93 94 3.507622 CCAAATCTGTTTCCTCCCTGTTC 59.492 47.826 0.00 0.00 0.00 3.18
94 95 3.500343 CCAAATCTGTTTCCTCCCTGTT 58.500 45.455 0.00 0.00 0.00 3.16
95 96 2.225117 CCCAAATCTGTTTCCTCCCTGT 60.225 50.000 0.00 0.00 0.00 4.00
96 97 2.041620 TCCCAAATCTGTTTCCTCCCTG 59.958 50.000 0.00 0.00 0.00 4.45
97 98 2.041755 GTCCCAAATCTGTTTCCTCCCT 59.958 50.000 0.00 0.00 0.00 4.20
98 99 2.041755 AGTCCCAAATCTGTTTCCTCCC 59.958 50.000 0.00 0.00 0.00 4.30
99 100 3.441500 AGTCCCAAATCTGTTTCCTCC 57.558 47.619 0.00 0.00 0.00 4.30
100 101 4.216472 GTCAAGTCCCAAATCTGTTTCCTC 59.784 45.833 0.00 0.00 0.00 3.71
101 102 4.145052 GTCAAGTCCCAAATCTGTTTCCT 58.855 43.478 0.00 0.00 0.00 3.36
102 103 3.255888 GGTCAAGTCCCAAATCTGTTTCC 59.744 47.826 0.00 0.00 0.00 3.13
103 104 3.255888 GGGTCAAGTCCCAAATCTGTTTC 59.744 47.826 0.00 0.00 46.30 2.78
104 105 3.230976 GGGTCAAGTCCCAAATCTGTTT 58.769 45.455 0.00 0.00 46.30 2.83
105 106 2.876581 GGGTCAAGTCCCAAATCTGTT 58.123 47.619 0.00 0.00 46.30 3.16
106 107 2.586648 GGGTCAAGTCCCAAATCTGT 57.413 50.000 0.00 0.00 46.30 3.41
485 486 2.047179 GTGTCCACCTTCCCTCGC 60.047 66.667 0.00 0.00 0.00 5.03
544 545 4.609018 CCATGCGCTACTCCGGGG 62.609 72.222 9.73 0.00 0.00 5.73
556 557 2.819984 TTCCCCTTCTCACGCCATGC 62.820 60.000 0.00 0.00 0.00 4.06
557 558 0.745845 CTTCCCCTTCTCACGCCATG 60.746 60.000 0.00 0.00 0.00 3.66
558 559 1.604378 CTTCCCCTTCTCACGCCAT 59.396 57.895 0.00 0.00 0.00 4.40
559 560 2.592993 CCTTCCCCTTCTCACGCCA 61.593 63.158 0.00 0.00 0.00 5.69
560 561 2.269241 CCTTCCCCTTCTCACGCC 59.731 66.667 0.00 0.00 0.00 5.68
561 562 2.269241 CCCTTCCCCTTCTCACGC 59.731 66.667 0.00 0.00 0.00 5.34
562 563 1.198759 TTCCCCTTCCCCTTCTCACG 61.199 60.000 0.00 0.00 0.00 4.35
563 564 1.004862 CTTTCCCCTTCCCCTTCTCAC 59.995 57.143 0.00 0.00 0.00 3.51
564 565 1.372501 CTTTCCCCTTCCCCTTCTCA 58.627 55.000 0.00 0.00 0.00 3.27
565 566 0.626382 CCTTTCCCCTTCCCCTTCTC 59.374 60.000 0.00 0.00 0.00 2.87
566 567 0.851332 CCCTTTCCCCTTCCCCTTCT 60.851 60.000 0.00 0.00 0.00 2.85
567 568 1.147190 ACCCTTTCCCCTTCCCCTTC 61.147 60.000 0.00 0.00 0.00 3.46
568 569 0.200260 TACCCTTTCCCCTTCCCCTT 59.800 55.000 0.00 0.00 0.00 3.95
569 570 0.551871 GTACCCTTTCCCCTTCCCCT 60.552 60.000 0.00 0.00 0.00 4.79
570 571 1.918467 CGTACCCTTTCCCCTTCCCC 61.918 65.000 0.00 0.00 0.00 4.81
571 572 0.911045 TCGTACCCTTTCCCCTTCCC 60.911 60.000 0.00 0.00 0.00 3.97
572 573 0.251354 GTCGTACCCTTTCCCCTTCC 59.749 60.000 0.00 0.00 0.00 3.46
573 574 0.978907 TGTCGTACCCTTTCCCCTTC 59.021 55.000 0.00 0.00 0.00 3.46
574 575 0.689055 GTGTCGTACCCTTTCCCCTT 59.311 55.000 0.00 0.00 0.00 3.95
575 576 1.538687 CGTGTCGTACCCTTTCCCCT 61.539 60.000 0.00 0.00 0.00 4.79
576 577 1.079612 CGTGTCGTACCCTTTCCCC 60.080 63.158 0.00 0.00 0.00 4.81
577 578 0.033920 AACGTGTCGTACCCTTTCCC 59.966 55.000 0.00 0.00 39.99 3.97
578 579 1.528161 CAAACGTGTCGTACCCTTTCC 59.472 52.381 0.00 0.00 39.99 3.13
579 580 2.204237 ACAAACGTGTCGTACCCTTTC 58.796 47.619 0.00 0.00 39.99 2.62
580 581 2.314323 ACAAACGTGTCGTACCCTTT 57.686 45.000 0.00 0.00 39.99 3.11
581 582 2.100584 TGTACAAACGTGTCGTACCCTT 59.899 45.455 15.69 0.00 39.99 3.95
582 583 1.680735 TGTACAAACGTGTCGTACCCT 59.319 47.619 15.69 0.00 39.99 4.34
583 584 1.786579 GTGTACAAACGTGTCGTACCC 59.213 52.381 15.69 5.08 39.99 3.69
584 585 1.447938 CGTGTACAAACGTGTCGTACC 59.552 52.381 15.69 9.02 39.99 3.34
585 586 1.137180 GCGTGTACAAACGTGTCGTAC 60.137 52.381 12.91 12.91 45.32 3.67
586 587 1.119635 GCGTGTACAAACGTGTCGTA 58.880 50.000 0.00 0.00 45.32 3.43
587 588 0.526096 AGCGTGTACAAACGTGTCGT 60.526 50.000 0.00 0.00 45.32 4.34
588 589 1.397619 TAGCGTGTACAAACGTGTCG 58.602 50.000 0.00 0.00 45.32 4.35
589 590 2.407609 CGTTAGCGTGTACAAACGTGTC 60.408 50.000 18.07 0.00 45.32 3.67
590 591 1.518102 CGTTAGCGTGTACAAACGTGT 59.482 47.619 18.07 5.59 45.32 4.49
591 592 1.136830 CCGTTAGCGTGTACAAACGTG 60.137 52.381 22.25 13.61 45.32 4.49
592 593 1.130955 CCGTTAGCGTGTACAAACGT 58.869 50.000 22.25 7.59 45.32 3.99
593 594 0.179268 GCCGTTAGCGTGTACAAACG 60.179 55.000 18.97 18.97 46.30 3.60
594 595 0.164432 GGCCGTTAGCGTGTACAAAC 59.836 55.000 0.00 0.00 45.17 2.93
595 596 0.249784 TGGCCGTTAGCGTGTACAAA 60.250 50.000 0.00 0.00 45.17 2.83
596 597 0.668096 CTGGCCGTTAGCGTGTACAA 60.668 55.000 0.00 0.00 45.17 2.41
597 598 1.080366 CTGGCCGTTAGCGTGTACA 60.080 57.895 0.00 0.00 45.17 2.90
598 599 1.808390 CCTGGCCGTTAGCGTGTAC 60.808 63.158 0.00 0.00 45.17 2.90
599 600 0.964860 TACCTGGCCGTTAGCGTGTA 60.965 55.000 0.00 0.00 45.17 2.90
600 601 2.277591 TACCTGGCCGTTAGCGTGT 61.278 57.895 0.00 0.00 45.17 4.49
601 602 1.808390 GTACCTGGCCGTTAGCGTG 60.808 63.158 0.00 0.00 45.17 5.34
602 603 2.575461 GTACCTGGCCGTTAGCGT 59.425 61.111 0.00 0.00 45.17 5.07
603 604 2.581409 CGTACCTGGCCGTTAGCG 60.581 66.667 0.00 0.00 45.17 4.26
604 605 2.202837 CCGTACCTGGCCGTTAGC 60.203 66.667 0.00 0.00 42.60 3.09
612 613 0.881159 TTGTCAAACGCCGTACCTGG 60.881 55.000 0.00 0.00 0.00 4.45
613 614 0.233848 GTTGTCAAACGCCGTACCTG 59.766 55.000 0.00 0.00 0.00 4.00
614 615 2.608640 GTTGTCAAACGCCGTACCT 58.391 52.632 0.00 0.00 0.00 3.08
622 623 7.946968 GGATAATGATCGGCGTTGTCAAACG 62.947 48.000 6.85 6.63 45.86 3.60
623 624 2.611974 AATGATCGGCGTTGTCAAAC 57.388 45.000 6.85 0.00 0.00 2.93
624 625 3.311322 GGATAATGATCGGCGTTGTCAAA 59.689 43.478 6.85 4.06 35.88 2.69
625 626 2.869801 GGATAATGATCGGCGTTGTCAA 59.130 45.455 6.85 0.00 35.88 3.18
626 627 2.102420 AGGATAATGATCGGCGTTGTCA 59.898 45.455 6.85 10.66 35.88 3.58
627 628 2.476619 CAGGATAATGATCGGCGTTGTC 59.523 50.000 6.85 4.76 34.09 3.18
628 629 2.483876 CAGGATAATGATCGGCGTTGT 58.516 47.619 6.85 0.00 32.28 3.32
629 630 1.195448 GCAGGATAATGATCGGCGTTG 59.805 52.381 6.85 0.00 32.28 4.10
630 631 1.512926 GCAGGATAATGATCGGCGTT 58.487 50.000 6.85 0.00 32.28 4.84
631 632 0.320771 GGCAGGATAATGATCGGCGT 60.321 55.000 6.85 0.00 35.17 5.68
632 633 0.320683 TGGCAGGATAATGATCGGCG 60.321 55.000 0.00 0.00 35.17 6.46
633 634 1.537202 GTTGGCAGGATAATGATCGGC 59.463 52.381 0.00 0.00 34.17 5.54
634 635 2.154462 GGTTGGCAGGATAATGATCGG 58.846 52.381 0.00 0.00 32.28 4.18
635 636 1.800586 CGGTTGGCAGGATAATGATCG 59.199 52.381 0.00 0.00 32.28 3.69
636 637 3.070018 CTCGGTTGGCAGGATAATGATC 58.930 50.000 0.00 0.00 0.00 2.92
637 638 2.705658 TCTCGGTTGGCAGGATAATGAT 59.294 45.455 0.00 0.00 0.00 2.45
638 639 2.115427 TCTCGGTTGGCAGGATAATGA 58.885 47.619 0.00 0.00 0.00 2.57
639 640 2.620251 TCTCGGTTGGCAGGATAATG 57.380 50.000 0.00 0.00 0.00 1.90
640 641 3.864789 ATTCTCGGTTGGCAGGATAAT 57.135 42.857 0.00 0.00 0.00 1.28
641 642 3.644966 AATTCTCGGTTGGCAGGATAA 57.355 42.857 0.00 0.00 0.00 1.75
642 643 3.491964 CGTAATTCTCGGTTGGCAGGATA 60.492 47.826 0.00 0.00 0.00 2.59
643 644 2.741878 CGTAATTCTCGGTTGGCAGGAT 60.742 50.000 0.00 0.00 0.00 3.24
644 645 1.404986 CGTAATTCTCGGTTGGCAGGA 60.405 52.381 0.00 0.00 0.00 3.86
645 646 1.006832 CGTAATTCTCGGTTGGCAGG 58.993 55.000 0.00 0.00 0.00 4.85
646 647 0.373716 GCGTAATTCTCGGTTGGCAG 59.626 55.000 5.39 0.00 0.00 4.85
647 648 0.036765 AGCGTAATTCTCGGTTGGCA 60.037 50.000 2.61 0.00 35.53 4.92
648 649 1.084289 AAGCGTAATTCTCGGTTGGC 58.916 50.000 15.78 0.00 44.97 4.52
649 650 3.000727 AGAAAGCGTAATTCTCGGTTGG 58.999 45.455 16.75 0.00 45.72 3.77
650 651 4.389077 AGAAGAAAGCGTAATTCTCGGTTG 59.611 41.667 16.75 0.00 45.72 3.77
652 653 4.189639 AGAAGAAAGCGTAATTCTCGGT 57.810 40.909 2.61 2.61 36.14 4.69
653 654 6.255887 ACATAAGAAGAAAGCGTAATTCTCGG 59.744 38.462 5.39 0.00 36.14 4.63
654 655 7.223058 ACATAAGAAGAAAGCGTAATTCTCG 57.777 36.000 0.88 0.00 36.14 4.04
655 656 9.903185 GTAACATAAGAAGAAAGCGTAATTCTC 57.097 33.333 0.88 0.00 36.14 2.87
656 657 8.592998 CGTAACATAAGAAGAAAGCGTAATTCT 58.407 33.333 0.00 0.00 38.75 2.40
657 658 7.844653 CCGTAACATAAGAAGAAAGCGTAATTC 59.155 37.037 0.00 0.00 0.00 2.17
658 659 7.546667 TCCGTAACATAAGAAGAAAGCGTAATT 59.453 33.333 0.00 0.00 0.00 1.40
659 660 7.037438 TCCGTAACATAAGAAGAAAGCGTAAT 58.963 34.615 0.00 0.00 0.00 1.89
660 661 6.389091 TCCGTAACATAAGAAGAAAGCGTAA 58.611 36.000 0.00 0.00 0.00 3.18
661 662 5.953183 TCCGTAACATAAGAAGAAAGCGTA 58.047 37.500 0.00 0.00 0.00 4.42
662 663 4.813027 TCCGTAACATAAGAAGAAAGCGT 58.187 39.130 0.00 0.00 0.00 5.07
663 664 5.968387 ATCCGTAACATAAGAAGAAAGCG 57.032 39.130 0.00 0.00 0.00 4.68
664 665 7.064728 AGTCAATCCGTAACATAAGAAGAAAGC 59.935 37.037 0.00 0.00 0.00 3.51
665 666 8.480643 AGTCAATCCGTAACATAAGAAGAAAG 57.519 34.615 0.00 0.00 0.00 2.62
666 667 7.548075 GGAGTCAATCCGTAACATAAGAAGAAA 59.452 37.037 0.00 0.00 38.67 2.52
667 668 7.039882 GGAGTCAATCCGTAACATAAGAAGAA 58.960 38.462 0.00 0.00 38.67 2.52
668 669 6.570692 GGAGTCAATCCGTAACATAAGAAGA 58.429 40.000 0.00 0.00 38.67 2.87
669 670 6.830114 GGAGTCAATCCGTAACATAAGAAG 57.170 41.667 0.00 0.00 38.67 2.85
683 684 2.369394 GGTGAACCCATGGAGTCAATC 58.631 52.381 15.22 8.14 0.00 2.67
684 685 1.340017 CGGTGAACCCATGGAGTCAAT 60.340 52.381 15.22 0.00 0.00 2.57
685 686 0.036164 CGGTGAACCCATGGAGTCAA 59.964 55.000 15.22 0.00 0.00 3.18
686 687 1.125093 ACGGTGAACCCATGGAGTCA 61.125 55.000 15.22 13.24 0.00 3.41
687 688 0.391263 GACGGTGAACCCATGGAGTC 60.391 60.000 15.22 10.53 0.00 3.36
688 689 1.125093 TGACGGTGAACCCATGGAGT 61.125 55.000 15.22 6.69 0.00 3.85
689 690 0.673644 GTGACGGTGAACCCATGGAG 60.674 60.000 15.22 5.95 0.00 3.86
690 691 1.373435 GTGACGGTGAACCCATGGA 59.627 57.895 15.22 0.00 0.00 3.41
691 692 0.536233 TTGTGACGGTGAACCCATGG 60.536 55.000 4.14 4.14 0.00 3.66
692 693 1.313772 TTTGTGACGGTGAACCCATG 58.686 50.000 0.00 0.00 0.00 3.66
693 694 2.286365 ATTTGTGACGGTGAACCCAT 57.714 45.000 0.00 0.00 0.00 4.00
694 695 2.496111 GTATTTGTGACGGTGAACCCA 58.504 47.619 0.00 0.00 0.00 4.51
695 696 1.461897 CGTATTTGTGACGGTGAACCC 59.538 52.381 0.00 0.00 36.66 4.11
696 697 2.137523 ACGTATTTGTGACGGTGAACC 58.862 47.619 0.00 0.00 44.58 3.62
697 698 3.865224 AACGTATTTGTGACGGTGAAC 57.135 42.857 0.00 0.00 44.58 3.18
698 699 4.879104 AAAACGTATTTGTGACGGTGAA 57.121 36.364 0.00 0.00 39.89 3.18
699 700 4.879104 AAAAACGTATTTGTGACGGTGA 57.121 36.364 0.00 0.00 39.89 4.02
756 757 9.621629 ACCTCGTTTATATTATGATTTTGTCCA 57.378 29.630 0.00 0.00 0.00 4.02
757 758 9.878599 CACCTCGTTTATATTATGATTTTGTCC 57.121 33.333 0.00 0.00 0.00 4.02
758 759 9.878599 CCACCTCGTTTATATTATGATTTTGTC 57.121 33.333 0.00 0.00 0.00 3.18
759 760 9.403583 ACCACCTCGTTTATATTATGATTTTGT 57.596 29.630 0.00 0.00 0.00 2.83
763 764 9.706691 CAGTACCACCTCGTTTATATTATGATT 57.293 33.333 0.00 0.00 0.00 2.57
764 765 9.085645 TCAGTACCACCTCGTTTATATTATGAT 57.914 33.333 0.00 0.00 0.00 2.45
765 766 8.355169 GTCAGTACCACCTCGTTTATATTATGA 58.645 37.037 0.00 0.00 0.00 2.15
766 767 7.597743 GGTCAGTACCACCTCGTTTATATTATG 59.402 40.741 4.60 0.00 45.98 1.90
767 768 7.664758 GGTCAGTACCACCTCGTTTATATTAT 58.335 38.462 4.60 0.00 45.98 1.28
768 769 7.042797 GGTCAGTACCACCTCGTTTATATTA 57.957 40.000 4.60 0.00 45.98 0.98
769 770 5.910614 GGTCAGTACCACCTCGTTTATATT 58.089 41.667 4.60 0.00 45.98 1.28
770 771 5.526506 GGTCAGTACCACCTCGTTTATAT 57.473 43.478 4.60 0.00 45.98 0.86
771 772 4.989279 GGTCAGTACCACCTCGTTTATA 57.011 45.455 4.60 0.00 45.98 0.98
772 773 3.881937 GGTCAGTACCACCTCGTTTAT 57.118 47.619 4.60 0.00 45.98 1.40
784 785 1.475682 CCGTACTTGGGAGGTCAGTAC 59.524 57.143 0.00 0.00 33.93 2.73
785 786 1.076024 ACCGTACTTGGGAGGTCAGTA 59.924 52.381 0.00 0.00 29.76 2.74
786 787 0.178941 ACCGTACTTGGGAGGTCAGT 60.179 55.000 0.00 0.00 29.76 3.41
787 788 0.974383 AACCGTACTTGGGAGGTCAG 59.026 55.000 0.00 0.00 35.68 3.51
788 789 0.682852 CAACCGTACTTGGGAGGTCA 59.317 55.000 0.00 0.00 35.68 4.02
789 790 0.683412 ACAACCGTACTTGGGAGGTC 59.317 55.000 0.55 0.00 35.68 3.85
790 791 0.683412 GACAACCGTACTTGGGAGGT 59.317 55.000 0.55 0.00 38.88 3.85
791 792 0.974383 AGACAACCGTACTTGGGAGG 59.026 55.000 0.55 0.00 0.00 4.30
792 793 1.067071 GGAGACAACCGTACTTGGGAG 60.067 57.143 0.55 0.00 0.00 4.30
793 794 0.971386 GGAGACAACCGTACTTGGGA 59.029 55.000 0.55 0.00 0.00 4.37
794 795 0.974383 AGGAGACAACCGTACTTGGG 59.026 55.000 0.55 0.00 34.73 4.12
795 796 1.893801 AGAGGAGACAACCGTACTTGG 59.106 52.381 0.55 0.00 34.73 3.61
796 797 4.673441 CATAGAGGAGACAACCGTACTTG 58.327 47.826 0.00 0.00 34.73 3.16
797 798 3.130693 GCATAGAGGAGACAACCGTACTT 59.869 47.826 0.00 0.00 34.73 2.24
798 799 2.688958 GCATAGAGGAGACAACCGTACT 59.311 50.000 0.00 0.00 34.73 2.73
799 800 2.688958 AGCATAGAGGAGACAACCGTAC 59.311 50.000 0.00 0.00 34.73 3.67
800 801 2.950309 GAGCATAGAGGAGACAACCGTA 59.050 50.000 0.00 0.00 34.73 4.02
801 802 1.751924 GAGCATAGAGGAGACAACCGT 59.248 52.381 0.00 0.00 34.73 4.83
802 803 2.028130 AGAGCATAGAGGAGACAACCG 58.972 52.381 0.00 0.00 34.73 4.44
803 804 4.219725 GGATAGAGCATAGAGGAGACAACC 59.780 50.000 0.00 0.00 0.00 3.77
804 805 5.076873 AGGATAGAGCATAGAGGAGACAAC 58.923 45.833 0.00 0.00 0.00 3.32
805 806 5.074377 AGAGGATAGAGCATAGAGGAGACAA 59.926 44.000 0.00 0.00 0.00 3.18
806 807 4.601420 AGAGGATAGAGCATAGAGGAGACA 59.399 45.833 0.00 0.00 0.00 3.41
807 808 5.179452 AGAGGATAGAGCATAGAGGAGAC 57.821 47.826 0.00 0.00 0.00 3.36
808 809 4.227300 GGAGAGGATAGAGCATAGAGGAGA 59.773 50.000 0.00 0.00 0.00 3.71
809 810 4.228210 AGGAGAGGATAGAGCATAGAGGAG 59.772 50.000 0.00 0.00 0.00 3.69
810 811 4.183116 AGGAGAGGATAGAGCATAGAGGA 58.817 47.826 0.00 0.00 0.00 3.71
811 812 4.018506 TGAGGAGAGGATAGAGCATAGAGG 60.019 50.000 0.00 0.00 0.00 3.69
812 813 4.943705 GTGAGGAGAGGATAGAGCATAGAG 59.056 50.000 0.00 0.00 0.00 2.43
813 814 4.564613 CGTGAGGAGAGGATAGAGCATAGA 60.565 50.000 0.00 0.00 0.00 1.98
814 815 3.689161 CGTGAGGAGAGGATAGAGCATAG 59.311 52.174 0.00 0.00 0.00 2.23
815 816 3.328050 TCGTGAGGAGAGGATAGAGCATA 59.672 47.826 0.00 0.00 0.00 3.14
816 817 2.107378 TCGTGAGGAGAGGATAGAGCAT 59.893 50.000 0.00 0.00 0.00 3.79
817 818 1.490910 TCGTGAGGAGAGGATAGAGCA 59.509 52.381 0.00 0.00 0.00 4.26
818 819 1.877443 GTCGTGAGGAGAGGATAGAGC 59.123 57.143 0.00 0.00 0.00 4.09
819 820 2.500229 GGTCGTGAGGAGAGGATAGAG 58.500 57.143 0.00 0.00 0.00 2.43
820 821 1.202663 CGGTCGTGAGGAGAGGATAGA 60.203 57.143 0.00 0.00 0.00 1.98
821 822 1.231221 CGGTCGTGAGGAGAGGATAG 58.769 60.000 0.00 0.00 0.00 2.08
822 823 0.179026 CCGGTCGTGAGGAGAGGATA 60.179 60.000 0.00 0.00 0.00 2.59
823 824 1.454111 CCGGTCGTGAGGAGAGGAT 60.454 63.158 0.00 0.00 0.00 3.24
824 825 1.923006 ATCCGGTCGTGAGGAGAGGA 61.923 60.000 0.00 1.87 40.26 3.71
825 826 1.448922 GATCCGGTCGTGAGGAGAGG 61.449 65.000 0.00 0.00 40.26 3.69
826 827 1.448922 GGATCCGGTCGTGAGGAGAG 61.449 65.000 0.00 0.00 40.26 3.20
827 828 1.453379 GGATCCGGTCGTGAGGAGA 60.453 63.158 0.00 0.00 40.26 3.71
828 829 2.835705 CGGATCCGGTCGTGAGGAG 61.836 68.421 26.95 0.00 40.26 3.69
829 830 2.827190 CGGATCCGGTCGTGAGGA 60.827 66.667 26.95 0.00 41.30 3.71
830 831 4.570663 GCGGATCCGGTCGTGAGG 62.571 72.222 33.98 4.66 40.19 3.86
831 832 4.570663 GGCGGATCCGGTCGTGAG 62.571 72.222 33.98 5.43 40.19 3.51
859 860 3.264897 GACGGCATGCTGTAGCGG 61.265 66.667 31.49 4.26 45.83 5.52
964 965 2.864343 CGTAACCTCTTTATCTTGGGCG 59.136 50.000 0.00 0.00 0.00 6.13
968 969 4.806247 CAGCCTCGTAACCTCTTTATCTTG 59.194 45.833 0.00 0.00 0.00 3.02
969 970 4.710375 TCAGCCTCGTAACCTCTTTATCTT 59.290 41.667 0.00 0.00 0.00 2.40
970 971 4.279145 TCAGCCTCGTAACCTCTTTATCT 58.721 43.478 0.00 0.00 0.00 1.98
971 972 4.338682 TCTCAGCCTCGTAACCTCTTTATC 59.661 45.833 0.00 0.00 0.00 1.75
972 973 4.098196 GTCTCAGCCTCGTAACCTCTTTAT 59.902 45.833 0.00 0.00 0.00 1.40
974 975 2.231721 GTCTCAGCCTCGTAACCTCTTT 59.768 50.000 0.00 0.00 0.00 2.52
976 977 1.465794 GTCTCAGCCTCGTAACCTCT 58.534 55.000 0.00 0.00 0.00 3.69
977 978 0.099082 CGTCTCAGCCTCGTAACCTC 59.901 60.000 0.00 0.00 0.00 3.85
978 979 1.935327 GCGTCTCAGCCTCGTAACCT 61.935 60.000 0.00 0.00 0.00 3.50
979 980 1.516603 GCGTCTCAGCCTCGTAACC 60.517 63.158 0.00 0.00 0.00 2.85
980 981 4.074454 GCGTCTCAGCCTCGTAAC 57.926 61.111 0.00 0.00 0.00 2.50
988 989 0.955428 TTGGACATTGGCGTCTCAGC 60.955 55.000 0.00 0.00 36.12 4.26
990 991 0.955428 GCTTGGACATTGGCGTCTCA 60.955 55.000 0.00 0.00 36.12 3.27
991 992 1.648467 GGCTTGGACATTGGCGTCTC 61.648 60.000 0.00 0.00 36.12 3.36
992 993 1.675641 GGCTTGGACATTGGCGTCT 60.676 57.895 0.00 0.00 36.12 4.18
993 994 2.700773 GGGCTTGGACATTGGCGTC 61.701 63.158 0.00 0.00 35.03 5.19
994 995 2.676471 GGGCTTGGACATTGGCGT 60.676 61.111 0.00 0.00 0.00 5.68
995 996 1.978617 AAGGGCTTGGACATTGGCG 60.979 57.895 0.00 0.00 0.00 5.69
996 997 1.593265 CAAGGGCTTGGACATTGGC 59.407 57.895 0.00 0.00 36.95 4.52
997 998 1.593265 GCAAGGGCTTGGACATTGG 59.407 57.895 0.00 0.00 40.74 3.16
1017 1024 1.002011 GGAGGCTGGGAAGGTGAAC 60.002 63.158 0.00 0.00 0.00 3.18
1054 1061 1.485480 ACAGGTCAGATCAGCCATCAG 59.515 52.381 0.00 0.00 33.29 2.90
1063 1070 0.108615 CACCGTCCACAGGTCAGATC 60.109 60.000 0.00 0.00 40.59 2.75
1067 1074 1.532078 TAGCACCGTCCACAGGTCA 60.532 57.895 0.00 0.00 40.59 4.02
1088 1095 0.938637 GATGCCAGTCGATCGCTCAG 60.939 60.000 11.09 6.07 0.00 3.35
1152 1159 2.658593 CTTATGACGGGGAGCGCG 60.659 66.667 0.00 0.00 45.13 6.86
1167 1174 0.179100 CATCGCCCATCACGAGTCTT 60.179 55.000 0.00 0.00 43.74 3.01
1182 1189 1.051008 TCAGATCATCCACCCCATCG 58.949 55.000 0.00 0.00 0.00 3.84
1214 1221 2.172293 CTCCAAATCCTTCTCCTCTGGG 59.828 54.545 0.00 0.00 0.00 4.45
1218 1225 4.141733 CCTTCTCTCCAAATCCTTCTCCTC 60.142 50.000 0.00 0.00 0.00 3.71
1219 1226 3.779738 CCTTCTCTCCAAATCCTTCTCCT 59.220 47.826 0.00 0.00 0.00 3.69
1245 1252 1.078426 AGAACACCTGTATGCCGCC 60.078 57.895 0.00 0.00 0.00 6.13
1253 1260 1.227853 GGCAACCGAGAACACCTGT 60.228 57.895 0.00 0.00 0.00 4.00
1261 1268 1.301716 GCAGTCTTGGCAACCGAGA 60.302 57.895 0.00 0.00 41.38 4.04
1367 1374 5.416013 GGCCTCTTTCTGCTACATTAAAACT 59.584 40.000 0.00 0.00 0.00 2.66
1372 1379 4.778213 ATGGCCTCTTTCTGCTACATTA 57.222 40.909 3.32 0.00 0.00 1.90
1395 1403 9.133627 CTGAGACTATTAATTCATATCCACGTG 57.866 37.037 9.08 9.08 0.00 4.49
1492 1504 7.004086 ACAAAGGATCAAACTCCAGTTGAATA 58.996 34.615 11.33 0.00 38.44 1.75
1500 1512 7.174946 GTCAATTAGACAAAGGATCAAACTCCA 59.825 37.037 0.00 0.00 46.77 3.86
1709 1771 8.465999 TGTATATGATCACCAAAAATGGTTGTC 58.534 33.333 0.00 0.74 40.85 3.18
1741 1804 7.876068 AGACATATACGAACAGAAGAACCAAAA 59.124 33.333 0.00 0.00 0.00 2.44
1833 1896 4.049186 TGCTCTTTCTTCGTGTAGAACAC 58.951 43.478 0.01 0.01 45.26 3.32
1904 1981 8.967918 TCGCCTTGCTATATTAGTGTAGAATAT 58.032 33.333 0.00 0.00 34.58 1.28
1971 2048 8.770438 AATTGTGTACAAAAAGTTCATTGTGT 57.230 26.923 1.76 0.00 39.89 3.72
2024 2102 7.586747 TCACAACAAAGAAGTACGAAAAGTTT 58.413 30.769 0.00 0.00 0.00 2.66
2084 2162 6.200475 GTCAACACCTAGCCGAGATAAAATAC 59.800 42.308 0.00 0.00 0.00 1.89
2092 2170 0.888619 CTGTCAACACCTAGCCGAGA 59.111 55.000 0.00 0.00 0.00 4.04
2096 2174 1.160137 CTTGCTGTCAACACCTAGCC 58.840 55.000 0.00 0.00 35.36 3.93
2255 2335 8.193250 TCTTAACTCAGATATAAAACGGCAAC 57.807 34.615 0.00 0.00 0.00 4.17
2334 2611 7.116805 ACAAAAGAGCAGCAAATATAGCAAAAC 59.883 33.333 0.00 0.00 0.00 2.43
2410 2687 7.770433 AGCAGCATGAAATATCTGTAGTAACAA 59.230 33.333 0.00 0.00 39.69 2.83
2682 2964 5.380900 TGAAGTCCCATCACATTAAACACA 58.619 37.500 0.00 0.00 0.00 3.72
2698 2980 1.804748 GACGTCCAACCAATGAAGTCC 59.195 52.381 3.51 0.00 0.00 3.85
2756 3040 4.601019 CCATCATATGGCAACTCGAAAAC 58.399 43.478 2.13 0.00 44.70 2.43
2830 3114 0.522076 GAGAATCAGCAAAAGCGCGG 60.522 55.000 8.83 0.00 36.85 6.46
2852 3136 5.702209 CCACATCCTAAAAGCAAGCATTTTT 59.298 36.000 0.39 0.00 32.38 1.94
2904 5381 8.646004 TGGGATAAATTTTTGTTCTCATTGTCA 58.354 29.630 0.00 0.00 0.00 3.58
2905 5382 9.487790 TTGGGATAAATTTTTGTTCTCATTGTC 57.512 29.630 0.00 0.00 0.00 3.18
2906 5383 9.492973 CTTGGGATAAATTTTTGTTCTCATTGT 57.507 29.630 0.00 0.00 0.00 2.71
2907 5384 9.709495 TCTTGGGATAAATTTTTGTTCTCATTG 57.291 29.630 0.00 0.00 0.00 2.82
3059 5536 6.582636 AGCATCTGGAAAAACGATATGTAGA 58.417 36.000 0.00 0.00 0.00 2.59
3100 5580 5.614324 TCTCAACATGGAAGGTTCGATAT 57.386 39.130 0.00 0.00 39.78 1.63
3102 5582 3.981071 TCTCAACATGGAAGGTTCGAT 57.019 42.857 0.00 0.00 39.78 3.59
3250 5734 3.058293 TGATCACGCATCAGGTGAAAAAC 60.058 43.478 0.00 0.00 46.47 2.43
3294 5778 5.649557 TCAAATGTCTTGTTGTTGTCCTTG 58.350 37.500 0.00 0.00 0.00 3.61
3305 5789 5.513267 GGACCCTTACTCTCAAATGTCTTGT 60.513 44.000 0.00 0.00 0.00 3.16
3310 5794 4.351111 AGTTGGACCCTTACTCTCAAATGT 59.649 41.667 0.00 0.00 0.00 2.71
3350 5834 3.084786 AGGTTGCTGTAAGATTTGAGGC 58.915 45.455 0.00 0.00 34.07 4.70
3364 5848 6.670695 AGGAAATGTGAATAAAAGGTTGCT 57.329 33.333 0.00 0.00 0.00 3.91
3391 5875 7.881142 CAATTCCTTATTGTCACCAACTACAA 58.119 34.615 0.00 0.00 39.05 2.41
3615 6100 3.429960 GGAAGAATGTACAGTCGGGGTAC 60.430 52.174 16.90 2.30 41.11 3.34
3618 6103 1.553248 TGGAAGAATGTACAGTCGGGG 59.447 52.381 16.90 0.00 0.00 5.73
3633 6120 6.088824 GCTATTTTGATGTGTTCACTGGAAG 58.911 40.000 4.59 0.00 42.29 3.46
3762 6249 5.251764 AGAAGTAGCAACAATCAGCTCAAT 58.748 37.500 0.00 0.00 42.05 2.57
3849 6366 3.402681 ACGGAGAGTGGGCATGGG 61.403 66.667 0.00 0.00 0.00 4.00
4178 6703 4.708726 AATGATGTAAACTGCTTCAGGC 57.291 40.909 0.00 0.00 42.22 4.85
4385 6916 4.284485 GGTGACATACAAAAACAACGACC 58.716 43.478 0.00 0.00 0.00 4.79
4484 8821 2.032924 CCACTTCGACCTTGTTTGAACC 59.967 50.000 0.00 0.00 0.00 3.62
4526 8863 9.367444 CTACTGATAACTCTTTATTTTGACGGT 57.633 33.333 0.00 0.00 0.00 4.83
4583 8921 6.919721 ACACAATAAGTTTGACAGTTTGTGT 58.080 32.000 11.51 11.51 46.30 3.72
4584 8922 7.431084 GGTACACAATAAGTTTGACAGTTTGTG 59.569 37.037 10.39 10.39 44.80 3.33
4585 8923 7.415877 GGGTACACAATAAGTTTGACAGTTTGT 60.416 37.037 0.00 0.00 0.00 2.83
4586 8924 6.915843 GGGTACACAATAAGTTTGACAGTTTG 59.084 38.462 0.00 0.00 0.00 2.93
4587 8925 6.238538 CGGGTACACAATAAGTTTGACAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
4616 8985 3.943691 ACAAGGGCCCGTGCGTTA 61.944 61.111 34.48 0.00 38.85 3.18
4682 9051 6.410540 AGAAGGACCATCAGACTAATCAAAC 58.589 40.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.