Multiple sequence alignment - TraesCS6A01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G237600 chr6A 100.000 3364 0 0 1 3364 446788303 446784940 0.000000e+00 6213.0
1 TraesCS6A01G237600 chr6A 100.000 1872 0 0 3678 5549 446784626 446782755 0.000000e+00 3458.0
2 TraesCS6A01G237600 chr6A 87.143 280 24 7 188 455 508044971 508044692 1.940000e-79 307.0
3 TraesCS6A01G237600 chr6D 93.863 1597 65 15 1747 3336 310403216 310401646 0.000000e+00 2375.0
4 TraesCS6A01G237600 chr6D 93.433 868 49 6 3678 4542 310401648 310400786 0.000000e+00 1280.0
5 TraesCS6A01G237600 chr6D 84.334 1066 66 37 764 1759 310405520 310404486 0.000000e+00 950.0
6 TraesCS6A01G237600 chr6D 89.494 514 22 7 5034 5547 310400458 310399977 6.110000e-174 621.0
7 TraesCS6A01G237600 chr6D 89.037 374 27 8 187 547 8097241 8096869 8.480000e-123 451.0
8 TraesCS6A01G237600 chr6D 93.511 262 8 5 4540 4792 310400710 310400449 1.130000e-101 381.0
9 TraesCS6A01G237600 chr6D 93.846 65 4 0 3774 3838 468105475 468105539 1.270000e-16 99.0
10 TraesCS6A01G237600 chr6D 95.745 47 1 1 4815 4861 4239103 4239148 2.140000e-09 75.0
11 TraesCS6A01G237600 chr6B 91.499 1541 59 23 702 2177 478480683 478479150 0.000000e+00 2054.0
12 TraesCS6A01G237600 chr6B 92.380 1168 47 15 2173 3336 478479071 478477942 0.000000e+00 1626.0
13 TraesCS6A01G237600 chr6B 91.193 545 43 2 4000 4542 478475501 478474960 0.000000e+00 736.0
14 TraesCS6A01G237600 chr6B 97.033 337 10 0 3678 4014 478477944 478477608 8.070000e-158 568.0
15 TraesCS6A01G237600 chr6B 90.909 396 16 8 5154 5547 478470798 478470421 1.070000e-141 514.0
16 TraesCS6A01G237600 chr6B 93.385 257 13 3 4540 4792 478474883 478474627 1.460000e-100 377.0
17 TraesCS6A01G237600 chr6B 87.097 186 21 3 4796 4980 266828542 266828725 2.030000e-49 207.0
18 TraesCS6A01G237600 chr6B 93.600 125 8 0 5034 5158 478474636 478474512 2.640000e-43 187.0
19 TraesCS6A01G237600 chr6B 94.118 68 1 2 616 683 713260067 713260131 3.540000e-17 100.0
20 TraesCS6A01G237600 chr6B 87.324 71 8 1 623 693 140197906 140197975 4.610000e-11 80.5
21 TraesCS6A01G237600 chr2A 86.481 466 53 4 2215 2679 577499194 577498738 2.310000e-138 503.0
22 TraesCS6A01G237600 chr2A 92.453 159 11 1 3681 3839 577497767 577497610 5.590000e-55 226.0
23 TraesCS6A01G237600 chr1D 88.101 395 30 11 167 547 424635296 424634905 2.360000e-123 453.0
24 TraesCS6A01G237600 chr1D 89.037 374 27 8 187 547 441744743 441745115 8.480000e-123 451.0
25 TraesCS6A01G237600 chr1D 87.013 385 34 10 174 542 415505333 415505717 2.390000e-113 420.0
26 TraesCS6A01G237600 chr1D 87.467 375 32 9 187 546 416659050 416659424 8.600000e-113 418.0
27 TraesCS6A01G237600 chr1D 88.406 276 20 6 281 544 398866340 398866615 6.930000e-84 322.0
28 TraesCS6A01G237600 chr1D 94.578 166 9 0 3 168 139117351 139117516 1.980000e-64 257.0
29 TraesCS6A01G237600 chr1D 93.976 166 10 0 3 168 424636340 424636175 9.230000e-63 252.0
30 TraesCS6A01G237600 chr1D 93.976 166 10 0 3 168 426390461 426390626 9.230000e-63 252.0
31 TraesCS6A01G237600 chr7D 88.594 377 28 11 187 549 18553860 18554235 1.420000e-120 444.0
32 TraesCS6A01G237600 chr7D 85.981 428 41 12 155 565 207198174 207197749 1.830000e-119 440.0
33 TraesCS6A01G237600 chr7D 85.821 402 36 15 167 550 4865108 4865506 1.860000e-109 407.0
34 TraesCS6A01G237600 chr2D 88.064 377 33 7 187 551 627749493 627749869 2.370000e-118 436.0
35 TraesCS6A01G237600 chr2D 93.976 166 10 0 3 168 56633664 56633499 9.230000e-63 252.0
36 TraesCS6A01G237600 chr2D 93.976 166 10 0 3 168 100370861 100371026 9.230000e-63 252.0
37 TraesCS6A01G237600 chr2D 93.976 166 10 0 3 168 596266870 596267035 9.230000e-63 252.0
38 TraesCS6A01G237600 chr2D 93.976 166 10 0 3 168 603143847 603143682 9.230000e-63 252.0
39 TraesCS6A01G237600 chr2D 93.976 166 10 0 3 168 627748412 627748577 9.230000e-63 252.0
40 TraesCS6A01G237600 chr2D 87.179 195 22 3 4793 4986 579393377 579393569 9.360000e-53 219.0
41 TraesCS6A01G237600 chr2D 95.385 65 0 2 619 683 636590627 636590566 3.540000e-17 100.0
42 TraesCS6A01G237600 chr4D 88.032 376 29 10 187 548 486565411 486565784 1.100000e-116 431.0
43 TraesCS6A01G237600 chr4D 84.906 212 25 4 4816 5026 465909432 465909637 2.030000e-49 207.0
44 TraesCS6A01G237600 chr1B 88.000 375 31 8 187 547 647013521 647013147 1.100000e-116 431.0
45 TraesCS6A01G237600 chr1B 87.701 374 31 9 187 546 528486296 528485924 6.650000e-114 422.0
46 TraesCS6A01G237600 chr1B 90.066 151 12 3 4791 4941 639640172 639640319 5.670000e-45 193.0
47 TraesCS6A01G237600 chr1B 94.118 68 1 1 616 683 579785728 579785664 3.540000e-17 100.0
48 TraesCS6A01G237600 chr1B 94.118 68 1 1 616 683 658730624 658730688 3.540000e-17 100.0
49 TraesCS6A01G237600 chr1B 87.500 72 7 2 623 693 633476197 633476267 1.280000e-11 82.4
50 TraesCS6A01G237600 chr3D 87.166 374 35 9 187 547 569883769 569883396 4.000000e-111 412.0
51 TraesCS6A01G237600 chr3D 85.714 196 26 2 4792 4986 21350445 21350639 7.290000e-49 206.0
52 TraesCS6A01G237600 chr3D 92.308 65 5 0 3774 3838 55115221 55115157 5.920000e-15 93.5
53 TraesCS6A01G237600 chr7A 87.131 373 35 7 187 546 564260349 564259977 1.440000e-110 411.0
54 TraesCS6A01G237600 chr7A 93.976 166 10 0 3 168 564261429 564261264 9.230000e-63 252.0
55 TraesCS6A01G237600 chr7A 92.754 69 2 3 616 684 162922932 162922867 4.580000e-16 97.1
56 TraesCS6A01G237600 chr5B 84.392 378 43 13 187 549 615401102 615401478 1.900000e-94 357.0
57 TraesCS6A01G237600 chr5B 79.275 193 20 5 4795 4986 233235280 233235107 3.510000e-22 117.0
58 TraesCS6A01G237600 chr5D 90.256 195 17 2 4793 4986 548292497 548292690 2.570000e-63 254.0
59 TraesCS6A01G237600 chr5D 85.366 246 21 6 4795 5026 481641598 481641842 2.000000e-59 241.0
60 TraesCS6A01G237600 chr5D 83.265 245 28 3 4794 5026 557142436 557142193 4.350000e-51 213.0
61 TraesCS6A01G237600 chr5D 85.938 192 25 2 4792 4982 498184927 498184737 2.620000e-48 204.0
62 TraesCS6A01G237600 chr2B 87.500 192 20 3 4795 4986 109211256 109211069 9.360000e-53 219.0
63 TraesCS6A01G237600 chr2B 94.118 68 1 1 616 683 46671861 46671925 3.540000e-17 100.0
64 TraesCS6A01G237600 chr2B 87.500 72 7 2 623 693 721232360 721232430 1.280000e-11 82.4
65 TraesCS6A01G237600 chr2B 87.324 71 8 1 623 693 100131793 100131724 4.610000e-11 80.5
66 TraesCS6A01G237600 chr5A 94.118 68 1 2 616 683 692236271 692236207 3.540000e-17 100.0
67 TraesCS6A01G237600 chr1A 94.118 68 1 1 616 683 306146402 306146466 3.540000e-17 100.0
68 TraesCS6A01G237600 chr1A 92.308 65 5 0 3774 3838 519474803 519474739 5.920000e-15 93.5
69 TraesCS6A01G237600 chr1A 88.000 50 5 1 4815 4864 511634352 511634304 2.160000e-04 58.4
70 TraesCS6A01G237600 chr4A 93.846 65 4 0 3774 3838 714211500 714211436 1.270000e-16 99.0
71 TraesCS6A01G237600 chr4A 92.754 69 1 2 616 683 577862881 577862816 4.580000e-16 97.1
72 TraesCS6A01G237600 chr3B 92.537 67 5 0 3774 3840 71212773 71212839 4.580000e-16 97.1
73 TraesCS6A01G237600 chr3B 87.500 72 7 2 623 693 741017969 741018039 1.280000e-11 82.4
74 TraesCS6A01G237600 chr3A 90.769 65 6 0 3774 3838 741233498 741233562 2.750000e-13 87.9
75 TraesCS6A01G237600 chr4B 88.732 71 7 1 623 693 207030796 207030865 9.900000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G237600 chr6A 446782755 446788303 5548 True 4835.5 6213 100.0000 1 5549 2 chr6A.!!$R2 5548
1 TraesCS6A01G237600 chr6D 310399977 310405520 5543 True 1121.4 2375 90.9270 764 5547 5 chr6D.!!$R2 4783
2 TraesCS6A01G237600 chr6B 478470421 478480683 10262 True 866.0 2054 92.8570 702 5547 7 chr6B.!!$R1 4845
3 TraesCS6A01G237600 chr2A 577497610 577499194 1584 True 364.5 503 89.4670 2215 3839 2 chr2A.!!$R1 1624
4 TraesCS6A01G237600 chr1D 424634905 424636340 1435 True 352.5 453 91.0385 3 547 2 chr1D.!!$R1 544
5 TraesCS6A01G237600 chr2D 627748412 627749869 1457 False 344.0 436 91.0200 3 551 2 chr2D.!!$F4 548
6 TraesCS6A01G237600 chr7A 564259977 564261429 1452 True 331.5 411 90.5535 3 546 2 chr7A.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 1522 0.031585 TTACACACACGAAGCGCTCT 59.968 50.0 12.06 0.00 0.00 4.09 F
598 1523 0.386858 TACACACACGAAGCGCTCTC 60.387 55.0 12.06 9.98 0.00 3.20 F
849 1774 0.473755 TGATGGAATGGACCGATGGG 59.526 55.0 0.00 0.00 40.11 4.00 F
1578 2615 0.399075 TCTCCCCGTTTCTGTTTCCC 59.601 55.0 0.00 0.00 0.00 3.97 F
2545 4951 0.608130 TGACCTTGTCACTGATCCCG 59.392 55.0 0.00 0.00 37.67 5.14 F
4185 9015 0.384309 TACTCGTGGCCGCTATTCTG 59.616 55.0 15.69 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 2469 0.536460 TCAGCCCCACGAAAAAGACC 60.536 55.000 0.0 0.0 0.00 3.85 R
1578 2615 0.795698 TGCATGGTCGAATGAACACG 59.204 50.000 1.2 0.0 46.59 4.49 R
2545 4951 1.415659 AGCACTCAGCCATAGGATGAC 59.584 52.381 0.0 0.0 43.58 3.06 R
3346 6054 2.796651 GCCCAGATTGCTTCGCTG 59.203 61.111 0.0 0.0 0.00 5.18 R
4223 9053 0.960364 AACGGCCTGCATGGTTACAG 60.960 55.000 0.0 0.0 38.35 2.74 R
5330 13968 0.474184 TAGCATGGAAAGCTAGGCCC 59.526 55.000 0.0 0.0 43.25 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.173356 GGATGTTGATCCCATCAGGTCA 59.827 50.000 18.76 0.00 42.42 4.02
78 79 1.400846 CATCAGGTCAACTCATGCTGC 59.599 52.381 0.00 0.00 0.00 5.25
120 121 2.935481 CTGACCCCTCCCAGCCAA 60.935 66.667 0.00 0.00 0.00 4.52
121 122 2.204291 TGACCCCTCCCAGCCAAT 60.204 61.111 0.00 0.00 0.00 3.16
156 157 6.374053 TGTGAACTTCAGATCAAAGTCAACAA 59.626 34.615 17.28 8.48 35.96 2.83
163 164 5.125257 TCAGATCAAAGTCAACAACAGCAAA 59.875 36.000 0.00 0.00 0.00 3.68
168 169 3.216147 AGTCAACAACAGCAAACACAC 57.784 42.857 0.00 0.00 0.00 3.82
169 170 2.094752 AGTCAACAACAGCAAACACACC 60.095 45.455 0.00 0.00 0.00 4.16
170 171 1.889170 TCAACAACAGCAAACACACCA 59.111 42.857 0.00 0.00 0.00 4.17
171 172 2.094803 TCAACAACAGCAAACACACCAG 60.095 45.455 0.00 0.00 0.00 4.00
176 177 0.309922 CAGCAAACACACCAGAGCTG 59.690 55.000 0.00 0.00 42.69 4.24
177 178 1.008079 GCAAACACACCAGAGCTGC 60.008 57.895 0.00 0.00 0.00 5.25
178 179 1.656441 CAAACACACCAGAGCTGCC 59.344 57.895 0.00 0.00 0.00 4.85
179 180 1.102809 CAAACACACCAGAGCTGCCA 61.103 55.000 0.00 0.00 0.00 4.92
180 181 1.103398 AAACACACCAGAGCTGCCAC 61.103 55.000 0.00 0.00 0.00 5.01
184 1067 2.111878 ACCAGAGCTGCCACACAC 59.888 61.111 0.00 0.00 0.00 3.82
220 1130 2.099921 AGCGTAGATCTGAAATCGCAGT 59.900 45.455 22.22 8.97 44.83 4.40
284 1194 2.935238 GCTATGGGTGAGCGAGTGAAAA 60.935 50.000 0.00 0.00 0.00 2.29
286 1196 0.756294 TGGGTGAGCGAGTGAAAAGA 59.244 50.000 0.00 0.00 0.00 2.52
308 1218 1.894282 GAGGCTAGATTTGGCGCCC 60.894 63.158 26.77 8.39 43.48 6.13
327 1238 3.799755 GACGGCGCGCCAGATTTT 61.800 61.111 45.26 23.88 35.37 1.82
336 1247 1.312815 CGCCAGATTTTCATCTCCCC 58.687 55.000 0.00 0.00 37.71 4.81
355 1266 2.694992 CCCCCTCACCCTTACCCC 60.695 72.222 0.00 0.00 0.00 4.95
356 1267 2.459710 CCCCTCACCCTTACCCCT 59.540 66.667 0.00 0.00 0.00 4.79
385 1308 4.687215 GCGCCACACTCAGCCTGA 62.687 66.667 0.00 0.00 0.00 3.86
423 1346 2.430921 CGAGCGTTTCCAGCGAGT 60.431 61.111 0.00 0.00 40.04 4.18
447 1371 2.616510 GGCTCTAGGCTGCTTTGAGAAA 60.617 50.000 22.94 0.00 41.46 2.52
482 1406 2.173519 CCAACAGTGAATCCAGGCAAT 58.826 47.619 0.00 0.00 0.00 3.56
500 1424 2.751806 CAATCAAACAGGCCTCTCCTTC 59.248 50.000 0.00 0.00 44.75 3.46
503 1427 1.842381 AAACAGGCCTCTCCTTCCCG 61.842 60.000 0.00 0.00 44.75 5.14
504 1428 4.168291 CAGGCCTCTCCTTCCCGC 62.168 72.222 0.00 0.00 44.75 6.13
505 1429 4.722535 AGGCCTCTCCTTCCCGCA 62.723 66.667 0.00 0.00 44.75 5.69
506 1430 3.483869 GGCCTCTCCTTCCCGCAT 61.484 66.667 0.00 0.00 0.00 4.73
528 1453 0.253044 GTCTAGTTGGGCTGGATGCA 59.747 55.000 0.00 0.00 45.15 3.96
551 1476 2.229302 GCAACCAAACACGCCCTTAATA 59.771 45.455 0.00 0.00 0.00 0.98
552 1477 3.305471 GCAACCAAACACGCCCTTAATAA 60.305 43.478 0.00 0.00 0.00 1.40
553 1478 4.231439 CAACCAAACACGCCCTTAATAAC 58.769 43.478 0.00 0.00 0.00 1.89
554 1479 3.758425 ACCAAACACGCCCTTAATAACT 58.242 40.909 0.00 0.00 0.00 2.24
555 1480 3.504520 ACCAAACACGCCCTTAATAACTG 59.495 43.478 0.00 0.00 0.00 3.16
556 1481 3.504520 CCAAACACGCCCTTAATAACTGT 59.495 43.478 0.00 0.00 0.00 3.55
557 1482 4.472286 CAAACACGCCCTTAATAACTGTG 58.528 43.478 0.00 0.00 0.00 3.66
558 1483 3.412237 ACACGCCCTTAATAACTGTGT 57.588 42.857 0.00 0.00 34.52 3.72
559 1484 3.071479 ACACGCCCTTAATAACTGTGTG 58.929 45.455 8.35 8.35 41.77 3.82
560 1485 3.071479 CACGCCCTTAATAACTGTGTGT 58.929 45.455 0.00 0.00 33.86 3.72
561 1486 3.071479 ACGCCCTTAATAACTGTGTGTG 58.929 45.455 0.00 0.00 0.00 3.82
562 1487 3.244284 ACGCCCTTAATAACTGTGTGTGA 60.244 43.478 0.00 0.00 0.00 3.58
563 1488 3.938963 CGCCCTTAATAACTGTGTGTGAT 59.061 43.478 0.00 0.00 0.00 3.06
564 1489 4.201812 CGCCCTTAATAACTGTGTGTGATG 60.202 45.833 0.00 0.00 0.00 3.07
565 1490 4.700213 GCCCTTAATAACTGTGTGTGATGT 59.300 41.667 0.00 0.00 0.00 3.06
566 1491 5.183140 GCCCTTAATAACTGTGTGTGATGTT 59.817 40.000 0.00 0.00 0.00 2.71
567 1492 6.294508 GCCCTTAATAACTGTGTGTGATGTTT 60.295 38.462 0.00 0.00 0.00 2.83
568 1493 7.083858 CCCTTAATAACTGTGTGTGATGTTTG 58.916 38.462 0.00 0.00 0.00 2.93
569 1494 6.582295 CCTTAATAACTGTGTGTGATGTTTGC 59.418 38.462 0.00 0.00 0.00 3.68
570 1495 5.512753 AATAACTGTGTGTGATGTTTGCA 57.487 34.783 0.00 0.00 0.00 4.08
571 1496 5.710513 ATAACTGTGTGTGATGTTTGCAT 57.289 34.783 0.00 0.00 38.18 3.96
572 1497 3.358707 ACTGTGTGTGATGTTTGCATG 57.641 42.857 0.00 0.00 35.07 4.06
573 1498 2.689471 ACTGTGTGTGATGTTTGCATGT 59.311 40.909 0.00 0.00 35.07 3.21
574 1499 3.047093 CTGTGTGTGATGTTTGCATGTG 58.953 45.455 0.00 0.00 35.07 3.21
575 1500 2.686915 TGTGTGTGATGTTTGCATGTGA 59.313 40.909 0.00 0.00 35.07 3.58
576 1501 3.129988 TGTGTGTGATGTTTGCATGTGAA 59.870 39.130 0.00 0.00 35.07 3.18
577 1502 4.202131 TGTGTGTGATGTTTGCATGTGAAT 60.202 37.500 0.00 0.00 35.07 2.57
578 1503 4.746115 GTGTGTGATGTTTGCATGTGAATT 59.254 37.500 0.00 0.00 35.07 2.17
579 1504 5.234757 GTGTGTGATGTTTGCATGTGAATTT 59.765 36.000 0.00 0.00 35.07 1.82
580 1505 6.420306 GTGTGTGATGTTTGCATGTGAATTTA 59.580 34.615 0.00 0.00 35.07 1.40
581 1506 6.420306 TGTGTGATGTTTGCATGTGAATTTAC 59.580 34.615 0.00 0.00 35.07 2.01
582 1507 6.420306 GTGTGATGTTTGCATGTGAATTTACA 59.580 34.615 5.43 5.43 35.07 2.41
583 1508 6.420306 TGTGATGTTTGCATGTGAATTTACAC 59.580 34.615 5.03 0.00 40.68 2.90
592 1517 4.203950 TGTGAATTTACACACACGAAGC 57.796 40.909 0.00 0.00 44.29 3.86
593 1518 3.215244 GTGAATTTACACACACGAAGCG 58.785 45.455 0.00 0.00 40.11 4.68
594 1519 2.230864 GAATTTACACACACGAAGCGC 58.769 47.619 0.00 0.00 0.00 5.92
595 1520 1.508632 ATTTACACACACGAAGCGCT 58.491 45.000 2.64 2.64 0.00 5.92
596 1521 0.856641 TTTACACACACGAAGCGCTC 59.143 50.000 12.06 3.22 0.00 5.03
597 1522 0.031585 TTACACACACGAAGCGCTCT 59.968 50.000 12.06 0.00 0.00 4.09
598 1523 0.386858 TACACACACGAAGCGCTCTC 60.387 55.000 12.06 9.98 0.00 3.20
599 1524 2.429236 ACACACGAAGCGCTCTCG 60.429 61.111 28.17 28.17 39.07 4.04
600 1525 2.126850 CACACGAAGCGCTCTCGA 60.127 61.111 33.07 0.00 38.10 4.04
601 1526 2.148982 CACACGAAGCGCTCTCGAG 61.149 63.158 33.07 28.96 38.10 4.04
619 1544 3.280920 GCTTCAGCTATGAGACCGG 57.719 57.895 0.00 0.00 36.61 5.28
620 1545 0.747255 GCTTCAGCTATGAGACCGGA 59.253 55.000 9.46 0.00 36.61 5.14
621 1546 1.537135 GCTTCAGCTATGAGACCGGAC 60.537 57.143 9.46 0.10 36.61 4.79
622 1547 1.751351 CTTCAGCTATGAGACCGGACA 59.249 52.381 9.46 5.76 36.61 4.02
623 1548 1.847328 TCAGCTATGAGACCGGACAA 58.153 50.000 9.46 0.00 0.00 3.18
624 1549 1.476891 TCAGCTATGAGACCGGACAAC 59.523 52.381 9.46 0.70 0.00 3.32
625 1550 1.478510 CAGCTATGAGACCGGACAACT 59.521 52.381 9.46 1.07 0.00 3.16
626 1551 1.751924 AGCTATGAGACCGGACAACTC 59.248 52.381 9.46 11.77 0.00 3.01
627 1552 1.751924 GCTATGAGACCGGACAACTCT 59.248 52.381 9.46 0.00 0.00 3.24
628 1553 2.223618 GCTATGAGACCGGACAACTCTC 60.224 54.545 9.46 10.58 0.00 3.20
629 1554 2.223803 ATGAGACCGGACAACTCTCT 57.776 50.000 9.46 0.00 33.00 3.10
630 1555 1.996798 TGAGACCGGACAACTCTCTT 58.003 50.000 9.46 0.00 33.00 2.85
631 1556 1.887198 TGAGACCGGACAACTCTCTTC 59.113 52.381 9.46 0.00 33.00 2.87
632 1557 2.164338 GAGACCGGACAACTCTCTTCT 58.836 52.381 9.46 0.00 0.00 2.85
633 1558 2.559231 GAGACCGGACAACTCTCTTCTT 59.441 50.000 9.46 0.00 0.00 2.52
634 1559 2.559231 AGACCGGACAACTCTCTTCTTC 59.441 50.000 9.46 0.00 0.00 2.87
635 1560 2.559231 GACCGGACAACTCTCTTCTTCT 59.441 50.000 9.46 0.00 0.00 2.85
636 1561 2.297597 ACCGGACAACTCTCTTCTTCTG 59.702 50.000 9.46 0.00 0.00 3.02
637 1562 2.333014 CGGACAACTCTCTTCTTCTGC 58.667 52.381 0.00 0.00 0.00 4.26
638 1563 2.029470 CGGACAACTCTCTTCTTCTGCT 60.029 50.000 0.00 0.00 0.00 4.24
639 1564 3.553922 CGGACAACTCTCTTCTTCTGCTT 60.554 47.826 0.00 0.00 0.00 3.91
640 1565 4.321304 CGGACAACTCTCTTCTTCTGCTTA 60.321 45.833 0.00 0.00 0.00 3.09
641 1566 5.542779 GGACAACTCTCTTCTTCTGCTTAA 58.457 41.667 0.00 0.00 0.00 1.85
642 1567 6.169800 GGACAACTCTCTTCTTCTGCTTAAT 58.830 40.000 0.00 0.00 0.00 1.40
643 1568 6.652900 GGACAACTCTCTTCTTCTGCTTAATT 59.347 38.462 0.00 0.00 0.00 1.40
644 1569 7.819900 GGACAACTCTCTTCTTCTGCTTAATTA 59.180 37.037 0.00 0.00 0.00 1.40
645 1570 9.209175 GACAACTCTCTTCTTCTGCTTAATTAA 57.791 33.333 0.00 0.00 0.00 1.40
646 1571 9.732130 ACAACTCTCTTCTTCTGCTTAATTAAT 57.268 29.630 0.00 0.00 0.00 1.40
648 1573 8.641499 ACTCTCTTCTTCTGCTTAATTAATCG 57.359 34.615 0.00 0.00 0.00 3.34
649 1574 8.470805 ACTCTCTTCTTCTGCTTAATTAATCGA 58.529 33.333 0.00 0.00 0.00 3.59
650 1575 9.474920 CTCTCTTCTTCTGCTTAATTAATCGAT 57.525 33.333 0.00 0.00 0.00 3.59
651 1576 9.254133 TCTCTTCTTCTGCTTAATTAATCGATG 57.746 33.333 0.00 0.96 0.00 3.84
652 1577 9.254133 CTCTTCTTCTGCTTAATTAATCGATGA 57.746 33.333 0.00 0.00 0.00 2.92
653 1578 9.254133 TCTTCTTCTGCTTAATTAATCGATGAG 57.746 33.333 0.00 0.00 0.00 2.90
654 1579 7.953158 TCTTCTGCTTAATTAATCGATGAGG 57.047 36.000 0.00 0.00 0.00 3.86
655 1580 6.425114 TCTTCTGCTTAATTAATCGATGAGGC 59.575 38.462 0.00 0.00 0.00 4.70
656 1581 5.610398 TCTGCTTAATTAATCGATGAGGCA 58.390 37.500 0.00 1.80 0.00 4.75
657 1582 6.054941 TCTGCTTAATTAATCGATGAGGCAA 58.945 36.000 0.00 0.00 0.00 4.52
658 1583 6.542005 TCTGCTTAATTAATCGATGAGGCAAA 59.458 34.615 0.00 0.00 0.00 3.68
659 1584 7.229306 TCTGCTTAATTAATCGATGAGGCAAAT 59.771 33.333 0.00 0.00 0.00 2.32
660 1585 7.362662 TGCTTAATTAATCGATGAGGCAAATC 58.637 34.615 0.00 0.00 0.00 2.17
661 1586 7.229306 TGCTTAATTAATCGATGAGGCAAATCT 59.771 33.333 0.00 0.00 0.00 2.40
662 1587 8.078596 GCTTAATTAATCGATGAGGCAAATCTT 58.921 33.333 0.00 0.00 0.00 2.40
663 1588 9.956720 CTTAATTAATCGATGAGGCAAATCTTT 57.043 29.630 0.00 0.00 0.00 2.52
665 1590 8.638685 AATTAATCGATGAGGCAAATCTTTTG 57.361 30.769 0.00 0.00 0.00 2.44
666 1591 3.492421 TCGATGAGGCAAATCTTTTGC 57.508 42.857 14.88 14.88 44.22 3.68
673 1598 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44
674 1599 2.754472 GCAAATCTTTTGCCTCCGTTT 58.246 42.857 12.74 0.00 39.38 3.60
675 1600 3.130633 GCAAATCTTTTGCCTCCGTTTT 58.869 40.909 12.74 0.00 39.38 2.43
676 1601 3.059665 GCAAATCTTTTGCCTCCGTTTTG 60.060 43.478 12.74 0.00 39.38 2.44
677 1602 4.367450 CAAATCTTTTGCCTCCGTTTTGA 58.633 39.130 0.00 0.00 0.00 2.69
678 1603 4.664150 AATCTTTTGCCTCCGTTTTGAA 57.336 36.364 0.00 0.00 0.00 2.69
679 1604 4.664150 ATCTTTTGCCTCCGTTTTGAAA 57.336 36.364 0.00 0.00 0.00 2.69
680 1605 4.457834 TCTTTTGCCTCCGTTTTGAAAA 57.542 36.364 0.00 0.00 0.00 2.29
681 1606 4.822026 TCTTTTGCCTCCGTTTTGAAAAA 58.178 34.783 0.00 0.00 0.00 1.94
699 1624 4.988065 AGCGCTTTCGAGCTTACA 57.012 50.000 2.64 0.00 44.18 2.41
700 1625 2.743195 AGCGCTTTCGAGCTTACAG 58.257 52.632 2.64 0.00 44.18 2.74
707 1632 4.326278 CGCTTTCGAGCTTACAGACAAATA 59.674 41.667 0.00 0.00 38.10 1.40
760 1685 4.578928 CCTATTAGCAGGGTTTAAACGCAT 59.421 41.667 30.04 19.25 43.53 4.73
761 1686 4.632538 ATTAGCAGGGTTTAAACGCATC 57.367 40.909 30.04 21.89 43.53 3.91
812 1737 7.671302 ACCTAGTGGTATATACTTGAATGCTG 58.329 38.462 12.54 0.00 46.43 4.41
849 1774 0.473755 TGATGGAATGGACCGATGGG 59.526 55.000 0.00 0.00 40.11 4.00
912 1837 3.062466 GCCCACGCTTCCCTTTCC 61.062 66.667 0.00 0.00 0.00 3.13
961 1896 6.192360 ACGTGAGTGAAAGAGAAAAATTTCG 58.808 36.000 0.00 0.00 46.97 3.46
962 1897 6.183360 ACGTGAGTGAAAGAGAAAAATTTCGT 60.183 34.615 0.00 0.00 46.97 3.85
963 1898 6.687105 CGTGAGTGAAAGAGAAAAATTTCGTT 59.313 34.615 0.00 0.00 41.92 3.85
964 1899 7.097409 CGTGAGTGAAAGAGAAAAATTTCGTTC 60.097 37.037 0.00 6.64 41.92 3.95
1062 2025 4.341783 GCAGGTGGCTGCCAGACT 62.342 66.667 24.10 20.15 43.99 3.24
1101 2087 1.287739 TCCATGTTTCCCCATCTTCCC 59.712 52.381 0.00 0.00 0.00 3.97
1133 2120 2.036217 CTCTGCTGCTCCAGGAATAGAG 59.964 54.545 0.00 0.00 30.12 2.43
1137 2124 1.301322 GCTCCAGGAATAGAGGCGC 60.301 63.158 0.00 0.00 0.00 6.53
1204 2197 1.606601 GCTTCCCAAACCCCACTCC 60.607 63.158 0.00 0.00 0.00 3.85
1210 2213 0.625849 CCAAACCCCACTCCAGCTAT 59.374 55.000 0.00 0.00 0.00 2.97
1211 2214 1.005924 CCAAACCCCACTCCAGCTATT 59.994 52.381 0.00 0.00 0.00 1.73
1262 2265 4.748409 GGAAGATGAGCTCCGAGC 57.252 61.111 12.80 12.80 42.84 5.03
1328 2352 1.984297 GTACGTTCTCTCGCCAGTTTC 59.016 52.381 0.00 0.00 0.00 2.78
1349 2378 7.490402 AGTTTCTCTTGAATTGCTTCAGTTTTG 59.510 33.333 0.00 0.00 42.19 2.44
1380 2409 1.534729 GGCAGTTTCGATGGGTTTCT 58.465 50.000 0.00 0.00 0.00 2.52
1388 2417 2.343101 TCGATGGGTTTCTGCGTAAAG 58.657 47.619 0.00 0.00 0.00 1.85
1409 2438 6.633500 AAGAAAATTCTGGTTCGATGTTCA 57.367 33.333 0.00 0.00 37.65 3.18
1433 2469 5.419542 TGACATGAAAGTATCCTTCGGAAG 58.580 41.667 10.82 10.82 34.34 3.46
1510 2546 2.483491 GAGGCTCTCTTTTCAGCACTTG 59.517 50.000 7.40 0.00 37.38 3.16
1578 2615 0.399075 TCTCCCCGTTTCTGTTTCCC 59.601 55.000 0.00 0.00 0.00 3.97
1579 2616 0.953960 CTCCCCGTTTCTGTTTCCCG 60.954 60.000 0.00 0.00 0.00 5.14
1584 2621 1.003223 CCGTTTCTGTTTCCCGTGTTC 60.003 52.381 0.00 0.00 0.00 3.18
1686 2723 6.038714 GCCTTCAAGGTAATCGAATCATTCTT 59.961 38.462 5.03 0.00 37.80 2.52
1695 2732 8.345565 GGTAATCGAATCATTCTTATTGCTGTT 58.654 33.333 0.00 0.00 0.00 3.16
1696 2733 9.722056 GTAATCGAATCATTCTTATTGCTGTTT 57.278 29.630 0.00 0.00 0.00 2.83
1914 4233 2.174764 CACATTCGACGTTCTCGGTAG 58.825 52.381 0.00 0.00 43.16 3.18
2112 4431 4.101448 AGCCAGGACATCGCACCC 62.101 66.667 0.00 0.00 0.00 4.61
2226 4629 2.785562 CGGGGAATTGTCAGTTTACCA 58.214 47.619 2.28 0.00 0.00 3.25
2238 4641 5.943416 TGTCAGTTTACCATGAATAACCCTG 59.057 40.000 0.00 2.48 0.00 4.45
2406 4812 7.569240 AGAGGTAAAATCTTGATCTTAGGTGG 58.431 38.462 0.00 0.00 0.00 4.61
2410 4816 5.422214 AAATCTTGATCTTAGGTGGTCGT 57.578 39.130 0.00 0.00 0.00 4.34
2458 4864 7.333528 AGTTTTCTTATTGCTGTCAAACTGA 57.666 32.000 0.00 0.00 35.56 3.41
2545 4951 0.608130 TGACCTTGTCACTGATCCCG 59.392 55.000 0.00 0.00 37.67 5.14
2557 4963 0.976641 TGATCCCGTCATCCTATGGC 59.023 55.000 0.00 0.00 0.00 4.40
2730 5229 9.791820 GATTAGAAAGACTGAACTAACTCCTAC 57.208 37.037 0.00 0.00 0.00 3.18
2732 5231 7.457024 AGAAAGACTGAACTAACTCCTACTC 57.543 40.000 0.00 0.00 0.00 2.59
2737 5236 3.362706 TGAACTAACTCCTACTCGCCAT 58.637 45.455 0.00 0.00 0.00 4.40
2745 5244 0.807667 CCTACTCGCCATGTCAGTGC 60.808 60.000 0.00 0.00 0.00 4.40
2760 5259 2.006056 CAGTGCCAACTGCTAGAGAGC 61.006 57.143 0.00 0.00 46.98 4.09
3104 5790 1.063717 CCAACCCCACCTGATATGCTT 60.064 52.381 0.00 0.00 0.00 3.91
3265 5972 2.755103 GCTTGAATTTGGGAGGTGGTAG 59.245 50.000 0.00 0.00 0.00 3.18
3284 5992 5.127194 TGGTAGCTACTATGTTGGAACTCAG 59.873 44.000 22.74 0.00 0.00 3.35
3307 6015 3.976306 TGTGTCATTGTTCTGTACGTACG 59.024 43.478 20.18 15.01 0.00 3.67
3309 6017 2.343544 GTCATTGTTCTGTACGTACGGC 59.656 50.000 26.50 15.61 32.63 5.68
3311 6019 1.003262 TTGTTCTGTACGTACGGCGC 61.003 55.000 26.50 20.69 46.11 6.53
3313 6021 0.799534 GTTCTGTACGTACGGCGCAT 60.800 55.000 26.50 0.00 46.11 4.73
3349 6057 3.499048 CATTTCTGCAAGTGTCATCAGC 58.501 45.455 0.00 0.00 33.76 4.26
3350 6058 1.150827 TTCTGCAAGTGTCATCAGCG 58.849 50.000 0.00 0.00 33.76 5.18
3786 6494 4.082125 TGAAGGAGGAGAAGAATTTTGCC 58.918 43.478 0.00 0.00 0.00 4.52
3913 6621 4.102367 ACATTGCCTAAACATGGTTTTGGT 59.898 37.500 18.64 2.51 0.00 3.67
3990 6698 5.663106 AGAACTCTGCACCTATTTCCTGATA 59.337 40.000 0.00 0.00 0.00 2.15
3991 6699 6.328672 AGAACTCTGCACCTATTTCCTGATAT 59.671 38.462 0.00 0.00 0.00 1.63
4031 8860 2.995939 TCTGCTACATCGTTTTCTGCAG 59.004 45.455 7.63 7.63 45.14 4.41
4033 8862 2.736721 TGCTACATCGTTTTCTGCAGTC 59.263 45.455 14.67 2.52 0.00 3.51
4046 8875 1.823610 CTGCAGTCCAGTGAGATCTCA 59.176 52.381 21.67 21.67 36.79 3.27
4049 8878 3.262660 TGCAGTCCAGTGAGATCTCAATT 59.737 43.478 26.70 15.21 41.85 2.32
4055 8884 1.202463 AGTGAGATCTCAATTCCGGCG 60.202 52.381 26.70 0.00 41.85 6.46
4069 8898 1.067635 TCCGGCGTACAGTTTAGTTCC 60.068 52.381 6.01 0.00 0.00 3.62
4070 8899 1.337074 CCGGCGTACAGTTTAGTTCCA 60.337 52.381 6.01 0.00 0.00 3.53
4143 8973 1.772836 GGGAAATCAGCAGGCAGAAT 58.227 50.000 0.00 0.00 0.00 2.40
4159 8989 3.448686 CAGAATGTCGGTTTCTCGCTAT 58.551 45.455 0.00 0.00 31.11 2.97
4167 8997 4.324402 GTCGGTTTCTCGCTATTTTTCGTA 59.676 41.667 0.00 0.00 0.00 3.43
4176 9006 2.030091 GCTATTTTTCGTACTCGTGGCC 59.970 50.000 0.00 0.00 38.33 5.36
4185 9015 0.384309 TACTCGTGGCCGCTATTCTG 59.616 55.000 15.69 0.00 0.00 3.02
4194 9024 1.300233 CGCTATTCTGGGCGTCCTC 60.300 63.158 7.97 0.00 45.34 3.71
4203 9033 2.368011 GGGCGTCCTCCTAGGCTTT 61.368 63.158 2.96 0.00 34.61 3.51
4220 9050 5.813383 AGGCTTTTTCATGAAGAGATGAGA 58.187 37.500 19.40 0.00 33.86 3.27
4223 9053 7.067251 AGGCTTTTTCATGAAGAGATGAGATTC 59.933 37.037 19.40 4.65 33.86 2.52
4238 9068 2.615912 GAGATTCTGTAACCATGCAGGC 59.384 50.000 0.00 0.00 43.14 4.85
4269 9099 4.703645 TCTCTGTCAAGACCTGAATACG 57.296 45.455 0.00 0.00 35.22 3.06
4306 9136 5.296035 GGTCTTGTTAGCCATATGTACAACC 59.704 44.000 0.00 0.00 0.00 3.77
4323 9153 3.011708 ACAACCCATGGCCTCTTATCTTT 59.988 43.478 6.09 0.00 0.00 2.52
4325 9155 2.582636 ACCCATGGCCTCTTATCTTTGT 59.417 45.455 6.09 0.00 0.00 2.83
4344 9174 7.568349 TCTTTGTATCTGATGCCTCTTGTAAT 58.432 34.615 0.00 0.00 0.00 1.89
4386 9216 6.322456 AGCTGCTATAGTCAGTCAATAAGTCA 59.678 38.462 18.99 0.00 34.21 3.41
4387 9217 7.015098 AGCTGCTATAGTCAGTCAATAAGTCAT 59.985 37.037 18.99 0.00 34.21 3.06
4389 9219 8.470657 TGCTATAGTCAGTCAATAAGTCATCT 57.529 34.615 0.84 0.00 0.00 2.90
4390 9220 9.574516 TGCTATAGTCAGTCAATAAGTCATCTA 57.425 33.333 0.84 0.00 0.00 1.98
4404 9234 2.823154 GTCATCTATCGCCCTAAGCTCT 59.177 50.000 0.00 0.00 40.39 4.09
4415 9245 3.681874 GCCCTAAGCTCTCGGTATTTGTT 60.682 47.826 0.00 0.00 38.99 2.83
4416 9246 4.442472 GCCCTAAGCTCTCGGTATTTGTTA 60.442 45.833 0.00 0.00 38.99 2.41
4417 9247 5.290386 CCCTAAGCTCTCGGTATTTGTTAG 58.710 45.833 0.00 0.00 0.00 2.34
4454 9286 6.350780 CCCTACGGTTTAGCCTATTCGATTAT 60.351 42.308 0.00 0.00 34.25 1.28
4514 9346 7.078228 CACCTGTAAACAGAATAGTTGCTTTC 58.922 38.462 11.69 0.00 46.59 2.62
4515 9347 6.770785 ACCTGTAAACAGAATAGTTGCTTTCA 59.229 34.615 11.69 0.00 46.59 2.69
4599 9514 5.739752 TCATATGACAAATGCTGCAGTAC 57.260 39.130 16.64 0.00 0.00 2.73
4647 9562 9.916360 TGAATAGTAGAAACTGAGACTGGTATA 57.084 33.333 0.00 0.00 36.36 1.47
4654 9574 8.375493 AGAAACTGAGACTGGTATATGGTTTA 57.625 34.615 0.00 0.00 0.00 2.01
4680 9600 4.017126 AGTAGGTTCCTTTTATGCAAGGC 58.983 43.478 0.00 0.00 42.97 4.35
4693 9613 0.823356 GCAAGGCTTGTCCTGGTTGA 60.823 55.000 26.71 0.00 46.94 3.18
4712 9632 5.106752 GGTTGAGAACTTGAAAGAGAGCATC 60.107 44.000 0.00 0.00 0.00 3.91
4750 9670 2.834549 CTCTATGGAGTGTTGACCCTGT 59.165 50.000 0.00 0.00 35.03 4.00
4772 9692 5.958380 TGTAGAATCATAGTTGAGTCCTGGT 59.042 40.000 0.00 0.00 45.77 4.00
4791 9711 6.212187 TCCTGGTTGATATACATGATCAGGAG 59.788 42.308 15.42 2.60 42.00 3.69
4792 9712 5.798132 TGGTTGATATACATGATCAGGAGC 58.202 41.667 15.42 0.00 34.85 4.70
4793 9713 5.307716 TGGTTGATATACATGATCAGGAGCA 59.692 40.000 15.42 2.55 34.85 4.26
4794 9714 6.183361 TGGTTGATATACATGATCAGGAGCAA 60.183 38.462 15.42 4.23 34.85 3.91
4795 9715 6.370994 GGTTGATATACATGATCAGGAGCAAG 59.629 42.308 15.42 0.00 34.85 4.01
4796 9716 6.046290 TGATATACATGATCAGGAGCAAGG 57.954 41.667 15.42 0.00 0.00 3.61
4797 9717 5.545335 TGATATACATGATCAGGAGCAAGGT 59.455 40.000 15.42 0.00 0.00 3.50
4798 9718 4.785346 ATACATGATCAGGAGCAAGGTT 57.215 40.909 15.42 0.00 0.00 3.50
4799 9719 3.446442 ACATGATCAGGAGCAAGGTTT 57.554 42.857 15.42 0.00 0.00 3.27
4800 9720 3.771216 ACATGATCAGGAGCAAGGTTTT 58.229 40.909 15.42 0.00 0.00 2.43
4801 9721 4.154942 ACATGATCAGGAGCAAGGTTTTT 58.845 39.130 15.42 0.00 0.00 1.94
4827 9747 9.909644 TTATTTCGGAAACAAAATATTTTCGGA 57.090 25.926 10.53 7.03 38.37 4.55
4828 9748 8.996024 ATTTCGGAAACAAAATATTTTCGGAT 57.004 26.923 10.53 6.67 39.42 4.18
4829 9749 8.455598 TTTCGGAAACAAAATATTTTCGGATC 57.544 30.769 10.53 7.10 39.42 3.36
4830 9750 6.557110 TCGGAAACAAAATATTTTCGGATCC 58.443 36.000 10.53 13.55 38.37 3.36
4831 9751 5.746721 CGGAAACAAAATATTTTCGGATCCC 59.253 40.000 10.53 6.91 34.93 3.85
4832 9752 6.626181 CGGAAACAAAATATTTTCGGATCCCA 60.626 38.462 10.53 0.00 34.93 4.37
4833 9753 6.533723 GGAAACAAAATATTTTCGGATCCCAC 59.466 38.462 10.53 0.00 33.29 4.61
4834 9754 6.850752 AACAAAATATTTTCGGATCCCACT 57.149 33.333 10.53 0.00 0.00 4.00
4835 9755 6.207691 ACAAAATATTTTCGGATCCCACTG 57.792 37.500 10.53 0.00 0.00 3.66
4836 9756 5.949354 ACAAAATATTTTCGGATCCCACTGA 59.051 36.000 10.53 0.00 0.00 3.41
4837 9757 6.435904 ACAAAATATTTTCGGATCCCACTGAA 59.564 34.615 10.53 0.49 33.98 3.02
4838 9758 7.039363 ACAAAATATTTTCGGATCCCACTGAAA 60.039 33.333 10.53 7.29 41.46 2.69
4839 9759 7.660030 AAATATTTTCGGATCCCACTGAAAT 57.340 32.000 6.06 8.13 42.29 2.17
4840 9760 8.760980 AAATATTTTCGGATCCCACTGAAATA 57.239 30.769 6.06 9.87 42.29 1.40
4841 9761 8.940397 AATATTTTCGGATCCCACTGAAATAT 57.060 30.769 6.06 11.47 42.29 1.28
4842 9762 6.639632 ATTTTCGGATCCCACTGAAATATG 57.360 37.500 6.06 0.00 42.29 1.78
4843 9763 3.126001 TCGGATCCCACTGAAATATGC 57.874 47.619 6.06 0.00 0.00 3.14
4844 9764 1.800586 CGGATCCCACTGAAATATGCG 59.199 52.381 6.06 0.00 0.00 4.73
4845 9765 2.547855 CGGATCCCACTGAAATATGCGA 60.548 50.000 6.06 0.00 33.88 5.10
4846 9766 3.476552 GGATCCCACTGAAATATGCGAA 58.523 45.455 0.00 0.00 0.00 4.70
4847 9767 3.882888 GGATCCCACTGAAATATGCGAAA 59.117 43.478 0.00 0.00 0.00 3.46
4848 9768 4.520492 GGATCCCACTGAAATATGCGAAAT 59.480 41.667 0.00 0.00 0.00 2.17
4849 9769 5.010012 GGATCCCACTGAAATATGCGAAATT 59.990 40.000 0.00 0.00 0.00 1.82
4850 9770 5.913137 TCCCACTGAAATATGCGAAATTT 57.087 34.783 0.00 0.00 0.00 1.82
4851 9771 5.890334 TCCCACTGAAATATGCGAAATTTC 58.110 37.500 8.20 8.20 41.60 2.17
4852 9772 5.417266 TCCCACTGAAATATGCGAAATTTCA 59.583 36.000 17.99 15.75 46.08 2.69
4883 9803 9.724839 TTTCGCTTATTTAGGAAATTATTTCGG 57.275 29.630 11.01 0.00 40.57 4.30
4884 9804 8.665643 TCGCTTATTTAGGAAATTATTTCGGA 57.334 30.769 11.01 0.00 40.57 4.55
4885 9805 9.280174 TCGCTTATTTAGGAAATTATTTCGGAT 57.720 29.630 11.01 3.46 40.57 4.18
4886 9806 9.893305 CGCTTATTTAGGAAATTATTTCGGATT 57.107 29.630 11.01 1.08 40.57 3.01
4977 9897 6.509418 TTCAATCTACCTTGAAATTTCGGG 57.491 37.500 21.15 21.15 41.03 5.14
4978 9898 4.947388 TCAATCTACCTTGAAATTTCGGGG 59.053 41.667 24.35 22.54 32.35 5.73
4979 9899 4.586306 ATCTACCTTGAAATTTCGGGGT 57.414 40.909 26.71 26.71 37.96 4.95
4980 9900 4.376225 TCTACCTTGAAATTTCGGGGTT 57.624 40.909 27.88 17.50 36.53 4.11
4981 9901 5.502089 TCTACCTTGAAATTTCGGGGTTA 57.498 39.130 27.88 18.71 36.53 2.85
4982 9902 5.247862 TCTACCTTGAAATTTCGGGGTTAC 58.752 41.667 27.88 2.15 36.53 2.50
4983 9903 3.834938 ACCTTGAAATTTCGGGGTTACA 58.165 40.909 24.35 2.35 33.14 2.41
4984 9904 4.216708 ACCTTGAAATTTCGGGGTTACAA 58.783 39.130 24.35 8.88 33.14 2.41
4985 9905 4.650131 ACCTTGAAATTTCGGGGTTACAAA 59.350 37.500 24.35 7.84 33.14 2.83
4986 9906 4.986034 CCTTGAAATTTCGGGGTTACAAAC 59.014 41.667 13.34 0.00 0.00 2.93
4987 9907 5.452077 CCTTGAAATTTCGGGGTTACAAACA 60.452 40.000 13.34 0.00 0.00 2.83
4988 9908 4.934515 TGAAATTTCGGGGTTACAAACAC 58.065 39.130 13.34 0.00 0.00 3.32
4989 9909 4.645588 TGAAATTTCGGGGTTACAAACACT 59.354 37.500 13.34 0.00 34.44 3.55
4990 9910 4.577834 AATTTCGGGGTTACAAACACTG 57.422 40.909 0.00 0.00 42.69 3.66
4993 9913 3.278668 TCGGGGTTACAAACACTGAAA 57.721 42.857 1.09 0.00 46.75 2.69
4994 9914 3.822940 TCGGGGTTACAAACACTGAAAT 58.177 40.909 1.09 0.00 46.75 2.17
4995 9915 4.970711 TCGGGGTTACAAACACTGAAATA 58.029 39.130 1.09 0.00 46.75 1.40
4996 9916 5.562635 TCGGGGTTACAAACACTGAAATAT 58.437 37.500 1.09 0.00 46.75 1.28
4997 9917 5.413213 TCGGGGTTACAAACACTGAAATATG 59.587 40.000 1.09 0.00 46.75 1.78
4998 9918 5.407502 GGGGTTACAAACACTGAAATATGC 58.592 41.667 0.00 0.00 34.44 3.14
4999 9919 5.092781 GGGTTACAAACACTGAAATATGCG 58.907 41.667 0.00 0.00 0.00 4.73
5000 9920 5.106475 GGGTTACAAACACTGAAATATGCGA 60.106 40.000 0.00 0.00 0.00 5.10
5001 9921 6.375377 GGTTACAAACACTGAAATATGCGAA 58.625 36.000 0.00 0.00 0.00 4.70
5002 9922 6.858993 GGTTACAAACACTGAAATATGCGAAA 59.141 34.615 0.00 0.00 0.00 3.46
5003 9923 7.540745 GGTTACAAACACTGAAATATGCGAAAT 59.459 33.333 0.00 0.00 0.00 2.17
5004 9924 8.911662 GTTACAAACACTGAAATATGCGAAATT 58.088 29.630 0.00 0.00 0.00 1.82
5005 9925 7.945033 ACAAACACTGAAATATGCGAAATTT 57.055 28.000 0.00 0.00 0.00 1.82
5006 9926 8.006741 ACAAACACTGAAATATGCGAAATTTC 57.993 30.769 8.20 8.20 41.60 2.17
5007 9927 7.651304 ACAAACACTGAAATATGCGAAATTTCA 59.349 29.630 17.99 15.75 46.08 2.69
5008 9928 8.486383 CAAACACTGAAATATGCGAAATTTCAA 58.514 29.630 17.99 6.05 46.93 2.69
5009 9929 8.586570 AACACTGAAATATGCGAAATTTCAAA 57.413 26.923 17.99 5.69 46.93 2.69
5010 9930 8.586570 ACACTGAAATATGCGAAATTTCAAAA 57.413 26.923 17.99 3.23 46.93 2.44
5011 9931 9.039870 ACACTGAAATATGCGAAATTTCAAAAA 57.960 25.926 17.99 1.35 46.93 1.94
5035 9955 9.898152 AAAATTCACTGAAATTTTAAACCCTGA 57.102 25.926 12.90 0.00 43.51 3.86
5037 9957 9.710900 AATTCACTGAAATTTTAAACCCTGATC 57.289 29.630 0.00 0.00 0.00 2.92
5038 9958 7.831691 TCACTGAAATTTTAAACCCTGATCA 57.168 32.000 0.00 0.00 0.00 2.92
5039 9959 7.885297 TCACTGAAATTTTAAACCCTGATCAG 58.115 34.615 16.24 16.24 38.14 2.90
5081 10001 4.923871 GCTTCGTTGTTGAGACTTCATCTA 59.076 41.667 0.00 0.00 38.00 1.98
5117 10037 4.668177 CGGTTTGGTTAATGTGTGTCGATC 60.668 45.833 0.00 0.00 0.00 3.69
5169 13807 6.524734 TGACTTCGATACATAAATGCTCCAT 58.475 36.000 0.00 0.00 0.00 3.41
5220 13858 5.113383 TGAGTGCACGTTTTCTAGAAGAAA 58.887 37.500 12.01 0.00 42.00 2.52
5265 13903 6.074676 ACGCTTAAGTACAGTACAAAAAGACG 60.075 38.462 13.37 17.78 0.00 4.18
5267 13905 6.292488 GCTTAAGTACAGTACAAAAAGACGCA 60.292 38.462 13.37 0.00 0.00 5.24
5271 13909 4.273005 ACAGTACAAAAAGACGCACAAG 57.727 40.909 0.00 0.00 0.00 3.16
5387 14025 5.950758 TTTTTGCGAGGACTAATGCTAAA 57.049 34.783 0.00 0.00 31.99 1.85
5446 14084 7.547019 TCAAACACATGCAAAATTGTCTGTAAA 59.453 29.630 0.00 0.00 0.00 2.01
5467 14105 9.926158 TGTAAATGTATCGTACTAAAACTTCCA 57.074 29.630 0.00 0.00 0.00 3.53
5504 14142 3.381272 AGCATGTAAATTGCGTGCCTTAT 59.619 39.130 21.43 3.67 46.70 1.73
5547 14186 6.534793 GGGTAAAATATAAGAACGACGGACAA 59.465 38.462 0.00 0.00 0.00 3.18
5548 14187 7.394099 GGTAAAATATAAGAACGACGGACAAC 58.606 38.462 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.221414 GCTGGCTATGAATGTCGGTC 58.779 55.000 0.00 0.00 0.00 4.79
1 2 0.541392 TGCTGGCTATGAATGTCGGT 59.459 50.000 0.00 0.00 0.00 4.69
9 10 1.419012 CCTTGGAGATGCTGGCTATGA 59.581 52.381 0.00 0.00 0.00 2.15
67 68 3.423539 TTCTTAGTGGCAGCATGAGTT 57.576 42.857 0.00 0.00 39.69 3.01
78 79 5.559608 CGCATGATGCTAACATTCTTAGTGG 60.560 44.000 16.17 0.00 42.25 4.00
120 121 5.737860 TCTGAAGTTCACATATGTGCTGAT 58.262 37.500 27.71 15.32 45.25 2.90
121 122 5.151297 TCTGAAGTTCACATATGTGCTGA 57.849 39.130 27.71 19.08 45.25 4.26
156 157 0.107017 AGCTCTGGTGTGTTTGCTGT 60.107 50.000 0.00 0.00 0.00 4.40
163 164 2.111878 GTGGCAGCTCTGGTGTGT 59.888 61.111 0.00 0.00 33.19 3.72
168 169 2.111669 TGTGTGTGGCAGCTCTGG 59.888 61.111 0.00 0.00 0.00 3.86
169 170 2.601398 CGTGTGTGTGGCAGCTCTG 61.601 63.158 0.00 0.00 0.00 3.35
170 171 2.280389 CGTGTGTGTGGCAGCTCT 60.280 61.111 0.00 0.00 0.00 4.09
171 172 4.017877 GCGTGTGTGTGGCAGCTC 62.018 66.667 0.00 0.00 0.00 4.09
235 1145 0.256177 CCCTTTCTTCCCTACTGCCC 59.744 60.000 0.00 0.00 0.00 5.36
284 1194 1.488393 GCCAAATCTAGCCTCACCTCT 59.512 52.381 0.00 0.00 0.00 3.69
286 1196 0.179000 CGCCAAATCTAGCCTCACCT 59.821 55.000 0.00 0.00 0.00 4.00
339 1250 1.693103 GAGGGGTAAGGGTGAGGGG 60.693 68.421 0.00 0.00 0.00 4.79
340 1251 2.064581 CGAGGGGTAAGGGTGAGGG 61.065 68.421 0.00 0.00 0.00 4.30
343 1254 2.288025 GCACGAGGGGTAAGGGTGA 61.288 63.158 0.00 0.00 0.00 4.02
345 1256 3.387947 CGCACGAGGGGTAAGGGT 61.388 66.667 0.00 0.00 0.00 4.34
347 1258 2.183555 GTCGCACGAGGGGTAAGG 59.816 66.667 0.00 0.00 0.00 2.69
349 1260 2.283388 AGGTCGCACGAGGGGTAA 60.283 61.111 0.00 0.00 0.00 2.85
350 1261 2.753043 GAGGTCGCACGAGGGGTA 60.753 66.667 0.00 0.00 0.00 3.69
373 1296 2.653702 GCGAGTCAGGCTGAGTGT 59.346 61.111 28.66 11.51 28.50 3.55
385 1308 2.214181 ATCGGCAGTTTCTCGCGAGT 62.214 55.000 33.33 13.67 0.00 4.18
423 1346 0.251354 CAAAGCAGCCTAGAGCCTGA 59.749 55.000 8.58 0.00 45.47 3.86
503 1427 0.749454 CAGCCCAACTAGACCCATGC 60.749 60.000 0.00 0.00 0.00 4.06
504 1428 0.107017 CCAGCCCAACTAGACCCATG 60.107 60.000 0.00 0.00 0.00 3.66
505 1429 0.253160 TCCAGCCCAACTAGACCCAT 60.253 55.000 0.00 0.00 0.00 4.00
506 1430 0.253160 ATCCAGCCCAACTAGACCCA 60.253 55.000 0.00 0.00 0.00 4.51
510 1435 0.543277 CTGCATCCAGCCCAACTAGA 59.457 55.000 0.00 0.00 44.83 2.43
513 1438 2.357836 CCTGCATCCAGCCCAACT 59.642 61.111 0.00 0.00 44.83 3.16
528 1453 3.223589 GGGCGTGTTTGGTTGCCT 61.224 61.111 1.77 0.00 46.72 4.75
551 1476 3.130869 ACATGCAAACATCACACACAGTT 59.869 39.130 0.00 0.00 32.87 3.16
552 1477 2.689471 ACATGCAAACATCACACACAGT 59.311 40.909 0.00 0.00 32.87 3.55
553 1478 3.047093 CACATGCAAACATCACACACAG 58.953 45.455 0.00 0.00 32.87 3.66
554 1479 2.686915 TCACATGCAAACATCACACACA 59.313 40.909 0.00 0.00 32.87 3.72
555 1480 3.352554 TCACATGCAAACATCACACAC 57.647 42.857 0.00 0.00 32.87 3.82
556 1481 4.587584 ATTCACATGCAAACATCACACA 57.412 36.364 0.00 0.00 32.87 3.72
557 1482 5.910637 AAATTCACATGCAAACATCACAC 57.089 34.783 0.00 0.00 32.87 3.82
558 1483 6.420306 GTGTAAATTCACATGCAAACATCACA 59.580 34.615 0.00 0.00 38.12 3.58
559 1484 6.420306 TGTGTAAATTCACATGCAAACATCAC 59.580 34.615 0.00 0.00 42.36 3.06
560 1485 6.510536 TGTGTAAATTCACATGCAAACATCA 58.489 32.000 0.00 0.00 42.36 3.07
571 1496 3.302805 CGCTTCGTGTGTGTAAATTCACA 60.303 43.478 0.00 0.00 44.54 3.58
572 1497 3.215244 CGCTTCGTGTGTGTAAATTCAC 58.785 45.455 0.00 0.00 38.63 3.18
573 1498 2.349060 GCGCTTCGTGTGTGTAAATTCA 60.349 45.455 0.00 0.00 0.00 2.57
574 1499 2.096417 AGCGCTTCGTGTGTGTAAATTC 60.096 45.455 2.64 0.00 0.00 2.17
575 1500 1.871039 AGCGCTTCGTGTGTGTAAATT 59.129 42.857 2.64 0.00 0.00 1.82
576 1501 1.459592 GAGCGCTTCGTGTGTGTAAAT 59.540 47.619 13.26 0.00 0.00 1.40
577 1502 0.856641 GAGCGCTTCGTGTGTGTAAA 59.143 50.000 13.26 0.00 0.00 2.01
578 1503 0.031585 AGAGCGCTTCGTGTGTGTAA 59.968 50.000 13.26 0.00 0.00 2.41
579 1504 0.386858 GAGAGCGCTTCGTGTGTGTA 60.387 55.000 13.26 0.00 0.00 2.90
580 1505 1.661821 GAGAGCGCTTCGTGTGTGT 60.662 57.895 13.26 0.00 0.00 3.72
581 1506 2.710971 CGAGAGCGCTTCGTGTGTG 61.711 63.158 24.34 4.10 0.00 3.82
582 1507 2.429236 CGAGAGCGCTTCGTGTGT 60.429 61.111 24.34 0.00 0.00 3.72
583 1508 2.126850 TCGAGAGCGCTTCGTGTG 60.127 61.111 28.28 12.22 37.46 3.82
584 1509 2.177038 CTCGAGAGCGCTTCGTGT 59.823 61.111 28.28 8.80 37.46 4.49
585 1510 3.243892 GCTCGAGAGCGCTTCGTG 61.244 66.667 28.28 26.83 45.29 4.35
601 1526 0.747255 TCCGGTCTCATAGCTGAAGC 59.253 55.000 0.00 0.00 42.49 3.86
602 1527 1.751351 TGTCCGGTCTCATAGCTGAAG 59.249 52.381 0.00 0.00 0.00 3.02
603 1528 1.847328 TGTCCGGTCTCATAGCTGAA 58.153 50.000 0.00 0.00 0.00 3.02
604 1529 1.476891 GTTGTCCGGTCTCATAGCTGA 59.523 52.381 0.00 0.00 0.00 4.26
605 1530 1.478510 AGTTGTCCGGTCTCATAGCTG 59.521 52.381 0.00 0.00 0.00 4.24
606 1531 1.751924 GAGTTGTCCGGTCTCATAGCT 59.248 52.381 0.00 0.00 0.00 3.32
607 1532 1.751924 AGAGTTGTCCGGTCTCATAGC 59.248 52.381 0.00 0.00 0.00 2.97
608 1533 3.283751 AGAGAGTTGTCCGGTCTCATAG 58.716 50.000 18.27 0.00 39.43 2.23
609 1534 3.367646 AGAGAGTTGTCCGGTCTCATA 57.632 47.619 18.27 0.00 39.43 2.15
610 1535 2.223803 AGAGAGTTGTCCGGTCTCAT 57.776 50.000 18.27 4.21 39.43 2.90
611 1536 1.887198 GAAGAGAGTTGTCCGGTCTCA 59.113 52.381 18.27 7.12 39.43 3.27
612 1537 2.164338 AGAAGAGAGTTGTCCGGTCTC 58.836 52.381 10.31 10.31 37.57 3.36
613 1538 2.296073 AGAAGAGAGTTGTCCGGTCT 57.704 50.000 0.00 0.00 0.00 3.85
614 1539 2.559231 AGAAGAAGAGAGTTGTCCGGTC 59.441 50.000 0.00 0.00 0.00 4.79
615 1540 2.297597 CAGAAGAAGAGAGTTGTCCGGT 59.702 50.000 0.00 0.00 0.00 5.28
616 1541 2.928731 GCAGAAGAAGAGAGTTGTCCGG 60.929 54.545 0.00 0.00 0.00 5.14
617 1542 2.029470 AGCAGAAGAAGAGAGTTGTCCG 60.029 50.000 0.00 0.00 0.00 4.79
618 1543 3.676291 AGCAGAAGAAGAGAGTTGTCC 57.324 47.619 0.00 0.00 0.00 4.02
619 1544 7.665561 AATTAAGCAGAAGAAGAGAGTTGTC 57.334 36.000 0.00 0.00 0.00 3.18
620 1545 9.732130 ATTAATTAAGCAGAAGAAGAGAGTTGT 57.268 29.630 3.94 0.00 0.00 3.32
622 1547 9.092876 CGATTAATTAAGCAGAAGAAGAGAGTT 57.907 33.333 13.48 0.00 0.00 3.01
623 1548 8.470805 TCGATTAATTAAGCAGAAGAAGAGAGT 58.529 33.333 13.48 0.00 0.00 3.24
624 1549 8.864069 TCGATTAATTAAGCAGAAGAAGAGAG 57.136 34.615 13.48 0.00 0.00 3.20
625 1550 9.254133 CATCGATTAATTAAGCAGAAGAAGAGA 57.746 33.333 13.48 0.28 0.00 3.10
626 1551 9.254133 TCATCGATTAATTAAGCAGAAGAAGAG 57.746 33.333 13.48 0.00 0.00 2.85
627 1552 9.254133 CTCATCGATTAATTAAGCAGAAGAAGA 57.746 33.333 13.48 4.60 0.00 2.87
628 1553 8.494347 CCTCATCGATTAATTAAGCAGAAGAAG 58.506 37.037 13.48 9.55 0.00 2.85
629 1554 7.041780 GCCTCATCGATTAATTAAGCAGAAGAA 60.042 37.037 13.48 2.55 0.00 2.52
630 1555 6.425114 GCCTCATCGATTAATTAAGCAGAAGA 59.575 38.462 13.48 11.65 0.00 2.87
631 1556 6.203530 TGCCTCATCGATTAATTAAGCAGAAG 59.796 38.462 13.48 8.59 0.00 2.85
632 1557 6.054941 TGCCTCATCGATTAATTAAGCAGAA 58.945 36.000 13.48 0.00 0.00 3.02
633 1558 5.610398 TGCCTCATCGATTAATTAAGCAGA 58.390 37.500 13.48 11.16 0.00 4.26
634 1559 5.929697 TGCCTCATCGATTAATTAAGCAG 57.070 39.130 13.48 6.62 0.00 4.24
635 1560 6.691754 TTTGCCTCATCGATTAATTAAGCA 57.308 33.333 13.48 7.23 0.00 3.91
636 1561 7.588512 AGATTTGCCTCATCGATTAATTAAGC 58.411 34.615 3.31 3.31 0.00 3.09
637 1562 9.956720 AAAGATTTGCCTCATCGATTAATTAAG 57.043 29.630 3.94 0.00 0.00 1.85
639 1564 9.734620 CAAAAGATTTGCCTCATCGATTAATTA 57.265 29.630 0.00 0.00 0.00 1.40
640 1565 7.223387 GCAAAAGATTTGCCTCATCGATTAATT 59.777 33.333 15.12 0.00 39.38 1.40
641 1566 6.698766 GCAAAAGATTTGCCTCATCGATTAAT 59.301 34.615 15.12 0.00 39.38 1.40
642 1567 6.035843 GCAAAAGATTTGCCTCATCGATTAA 58.964 36.000 15.12 0.00 39.38 1.40
643 1568 5.581605 GCAAAAGATTTGCCTCATCGATTA 58.418 37.500 15.12 0.00 39.38 1.75
644 1569 4.427312 GCAAAAGATTTGCCTCATCGATT 58.573 39.130 15.12 0.00 39.38 3.34
645 1570 4.037858 GCAAAAGATTTGCCTCATCGAT 57.962 40.909 15.12 0.00 39.38 3.59
646 1571 3.492421 GCAAAAGATTTGCCTCATCGA 57.508 42.857 15.12 0.00 39.38 3.59
654 1579 2.438868 AACGGAGGCAAAAGATTTGC 57.561 45.000 17.18 17.18 44.22 3.68
655 1580 4.367450 TCAAAACGGAGGCAAAAGATTTG 58.633 39.130 0.00 0.00 0.00 2.32
656 1581 4.664150 TCAAAACGGAGGCAAAAGATTT 57.336 36.364 0.00 0.00 0.00 2.17
657 1582 4.664150 TTCAAAACGGAGGCAAAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
658 1583 4.664150 TTTCAAAACGGAGGCAAAAGAT 57.336 36.364 0.00 0.00 0.00 2.40
659 1584 4.457834 TTTTCAAAACGGAGGCAAAAGA 57.542 36.364 0.00 0.00 0.00 2.52
686 1611 5.578727 AGCTATTTGTCTGTAAGCTCGAAAG 59.421 40.000 0.00 0.00 39.23 2.62
687 1612 5.348724 CAGCTATTTGTCTGTAAGCTCGAAA 59.651 40.000 0.00 0.00 41.44 3.46
688 1613 4.864806 CAGCTATTTGTCTGTAAGCTCGAA 59.135 41.667 0.00 0.00 41.44 3.71
689 1614 4.424626 CAGCTATTTGTCTGTAAGCTCGA 58.575 43.478 0.00 0.00 41.44 4.04
690 1615 3.000724 GCAGCTATTTGTCTGTAAGCTCG 59.999 47.826 0.00 0.00 41.44 5.03
691 1616 3.935203 TGCAGCTATTTGTCTGTAAGCTC 59.065 43.478 0.00 0.00 41.44 4.09
692 1617 3.937706 CTGCAGCTATTTGTCTGTAAGCT 59.062 43.478 0.00 0.00 44.08 3.74
693 1618 3.486542 GCTGCAGCTATTTGTCTGTAAGC 60.487 47.826 31.33 0.00 36.11 3.09
694 1619 3.686241 TGCTGCAGCTATTTGTCTGTAAG 59.314 43.478 36.61 0.00 42.66 2.34
695 1620 3.673902 TGCTGCAGCTATTTGTCTGTAA 58.326 40.909 36.61 11.32 42.66 2.41
696 1621 3.264947 CTGCTGCAGCTATTTGTCTGTA 58.735 45.455 36.61 13.13 42.66 2.74
697 1622 2.082231 CTGCTGCAGCTATTTGTCTGT 58.918 47.619 36.61 0.00 42.66 3.41
698 1623 2.082231 ACTGCTGCAGCTATTTGTCTG 58.918 47.619 36.61 17.51 42.66 3.51
699 1624 2.082231 CACTGCTGCAGCTATTTGTCT 58.918 47.619 36.61 9.34 42.66 3.41
700 1625 1.467035 GCACTGCTGCAGCTATTTGTC 60.467 52.381 36.61 19.07 43.62 3.18
707 1632 1.542492 AAAATAGCACTGCTGCAGCT 58.458 45.000 36.61 23.03 46.97 4.24
805 1730 5.346822 GTCAATTGAAATGTCACCAGCATTC 59.653 40.000 10.35 0.00 35.73 2.67
812 1737 5.183713 TCCATCAGTCAATTGAAATGTCACC 59.816 40.000 10.35 0.00 31.90 4.02
849 1774 4.508861 GGTTACATCATGGCATTTGCATTC 59.491 41.667 0.00 0.00 44.36 2.67
904 1829 0.845102 GTGGGAAGGGAGGAAAGGGA 60.845 60.000 0.00 0.00 0.00 4.20
912 1837 4.148825 CTCGCGGTGGGAAGGGAG 62.149 72.222 6.13 0.00 40.21 4.30
961 1896 2.095059 TCTAGTACGCTTTCGGGTGAAC 60.095 50.000 0.00 0.00 40.69 3.18
962 1897 2.161855 TCTAGTACGCTTTCGGGTGAA 58.838 47.619 0.00 0.00 40.69 3.18
963 1898 1.825090 TCTAGTACGCTTTCGGGTGA 58.175 50.000 0.00 0.00 40.69 4.02
964 1899 2.642139 TTCTAGTACGCTTTCGGGTG 57.358 50.000 0.00 0.00 40.69 4.61
1055 2018 1.904990 GAGGGGAACAGGAGTCTGGC 61.905 65.000 0.00 0.00 44.99 4.85
1057 2020 0.901124 CTGAGGGGAACAGGAGTCTG 59.099 60.000 0.00 0.00 46.10 3.51
1058 2021 0.787084 TCTGAGGGGAACAGGAGTCT 59.213 55.000 0.00 0.00 36.22 3.24
1059 2022 1.645710 TTCTGAGGGGAACAGGAGTC 58.354 55.000 0.00 0.00 36.22 3.36
1060 2023 2.118403 TTTCTGAGGGGAACAGGAGT 57.882 50.000 0.00 0.00 36.22 3.85
1061 2024 3.615155 GAATTTCTGAGGGGAACAGGAG 58.385 50.000 0.00 0.00 36.22 3.69
1062 2025 2.308866 GGAATTTCTGAGGGGAACAGGA 59.691 50.000 0.00 0.00 36.22 3.86
1101 2087 3.080121 AGCAGAGGAGGAAGCGGG 61.080 66.667 0.00 0.00 0.00 6.13
1137 2124 1.227263 CCCTGTCCACGCTATTCGG 60.227 63.158 0.00 0.00 43.86 4.30
1328 2352 5.287226 AGCAAAACTGAAGCAATTCAAGAG 58.713 37.500 0.00 0.00 0.00 2.85
1349 2378 2.908626 CGAAACTGCCGAAATAACAAGC 59.091 45.455 0.00 0.00 0.00 4.01
1380 2409 4.512198 TCGAACCAGAATTTTCTTTACGCA 59.488 37.500 0.00 0.00 34.74 5.24
1388 2417 6.524586 GTCATGAACATCGAACCAGAATTTTC 59.475 38.462 0.00 0.00 0.00 2.29
1433 2469 0.536460 TCAGCCCCACGAAAAAGACC 60.536 55.000 0.00 0.00 0.00 3.85
1518 2554 8.007716 CGAACAAATACGATCATAATAACACCC 58.992 37.037 0.00 0.00 0.00 4.61
1578 2615 0.795698 TGCATGGTCGAATGAACACG 59.204 50.000 1.20 0.00 46.59 4.49
1579 2616 1.806542 ACTGCATGGTCGAATGAACAC 59.193 47.619 1.20 0.00 46.59 3.32
1607 2644 2.665537 GTGAACACGAGATCTGCTTCTG 59.334 50.000 0.00 0.00 0.00 3.02
1645 2682 3.270877 GAAGGCGATGTATTGGTCTGTT 58.729 45.455 0.00 0.00 0.00 3.16
1686 2723 9.284594 GCGAAACAAATAAGATAAACAGCAATA 57.715 29.630 0.00 0.00 0.00 1.90
1698 2735 9.773328 CTCATATTTTGAGCGAAACAAATAAGA 57.227 29.630 0.00 0.00 45.16 2.10
1720 2757 7.472334 AAAGATGGACTGTAAATTTGCTCAT 57.528 32.000 7.80 6.34 0.00 2.90
1935 4254 5.803461 CAGGAAAACAACATGCATAGTGATG 59.197 40.000 14.09 5.34 36.02 3.07
2112 4431 4.060900 CCATGTCTCCGTTGATATCCTTG 58.939 47.826 0.00 0.00 0.00 3.61
2226 4629 5.994416 AATACCTCACCAGGGTTATTCAT 57.006 39.130 0.00 0.00 45.53 2.57
2238 4641 6.250344 GGTGAACTACAAAAATACCTCACC 57.750 41.667 2.42 2.42 43.35 4.02
2544 4950 1.871408 GCACTCAGCCATAGGATGACG 60.871 57.143 0.00 0.31 43.58 4.35
2545 4951 1.415659 AGCACTCAGCCATAGGATGAC 59.584 52.381 0.00 0.00 43.58 3.06
2557 4963 3.065786 TGCAAAGAAAGAACAGCACTCAG 59.934 43.478 0.00 0.00 0.00 3.35
2760 5259 6.834168 ACACCAAAATCTATTAGTTGGGTG 57.166 37.500 14.71 14.71 44.01 4.61
3039 5725 6.754702 ACATGGTTGAATTCAGAGATGAAG 57.245 37.500 20.76 7.98 0.00 3.02
3045 5731 7.380602 GTGAAAAGAACATGGTTGAATTCAGAG 59.619 37.037 8.41 1.29 0.00 3.35
3135 5842 4.767928 AGAAAGGTAACAGATGTCGACTCT 59.232 41.667 17.92 13.62 41.41 3.24
3219 5926 7.669098 CAATTGCACAGTACATAGAAAATTGC 58.331 34.615 0.00 0.00 0.00 3.56
3265 5972 4.627467 CACACTGAGTTCCAACATAGTAGC 59.373 45.833 0.00 0.00 0.00 3.58
3284 5992 4.143680 CGTACGTACAGAACAATGACACAC 60.144 45.833 24.50 0.00 0.00 3.82
3307 6015 3.374058 TGCTAAAGAGAACTTAATGCGCC 59.626 43.478 4.18 0.00 35.05 6.53
3309 6017 7.427606 CAGAAATGCTAAAGAGAACTTAATGCG 59.572 37.037 0.00 0.00 35.05 4.73
3311 6019 8.239314 TGCAGAAATGCTAAAGAGAACTTAATG 58.761 33.333 1.53 0.00 34.22 1.90
3313 6021 7.744087 TGCAGAAATGCTAAAGAGAACTTAA 57.256 32.000 1.53 0.00 34.22 1.85
3346 6054 2.796651 GCCCAGATTGCTTCGCTG 59.203 61.111 0.00 0.00 0.00 5.18
3679 6387 2.774799 GGCATCACCGGGCAACATC 61.775 63.158 6.32 0.00 39.74 3.06
3913 6621 2.929531 TGAAGACACAAAGCGCAAAA 57.070 40.000 11.47 0.00 0.00 2.44
3990 6698 8.324163 AGCAGAGAAGTAATGAAAACGTAAAT 57.676 30.769 0.00 0.00 0.00 1.40
3991 6699 7.724305 AGCAGAGAAGTAATGAAAACGTAAA 57.276 32.000 0.00 0.00 0.00 2.01
4014 8843 3.325870 TGGACTGCAGAAAACGATGTAG 58.674 45.455 23.35 0.00 35.53 2.74
4031 8860 3.452474 CGGAATTGAGATCTCACTGGAC 58.548 50.000 25.07 13.83 39.66 4.02
4033 8862 2.831333 CCGGAATTGAGATCTCACTGG 58.169 52.381 25.07 21.98 39.66 4.00
4046 8875 3.323751 ACTAAACTGTACGCCGGAATT 57.676 42.857 5.05 0.00 0.00 2.17
4049 8878 1.067635 GGAACTAAACTGTACGCCGGA 60.068 52.381 5.05 0.00 0.00 5.14
4096 8926 8.255206 TCTTAGGAGACGCTGTAAAATTCAATA 58.745 33.333 0.00 0.00 0.00 1.90
4143 8973 3.122278 CGAAAAATAGCGAGAAACCGACA 59.878 43.478 0.00 0.00 0.00 4.35
4159 8989 1.559149 GCGGCCACGAGTACGAAAAA 61.559 55.000 2.24 0.00 44.60 1.94
4167 8997 1.141881 CAGAATAGCGGCCACGAGT 59.858 57.895 2.24 0.00 44.60 4.18
4185 9015 1.911702 AAAAGCCTAGGAGGACGCCC 61.912 60.000 14.75 0.00 37.67 6.13
4194 9024 6.118170 TCATCTCTTCATGAAAAAGCCTAGG 58.882 40.000 9.88 3.67 29.41 3.02
4203 9033 9.376075 GTTACAGAATCTCATCTCTTCATGAAA 57.624 33.333 9.88 0.00 32.24 2.69
4220 9050 1.767759 GGCCTGCATGGTTACAGAAT 58.232 50.000 0.00 0.00 35.90 2.40
4223 9053 0.960364 AACGGCCTGCATGGTTACAG 60.960 55.000 0.00 0.00 38.35 2.74
4238 9068 3.491267 GTCTTGACAGAGAACTGAAACGG 59.509 47.826 0.00 0.00 46.03 4.44
4269 9099 1.132643 ACAAGACCGAGAGCACGTATC 59.867 52.381 0.00 0.00 0.00 2.24
4306 9136 5.704515 CAGATACAAAGATAAGAGGCCATGG 59.295 44.000 7.63 7.63 0.00 3.66
4323 9153 8.579850 AAAAATTACAAGAGGCATCAGATACA 57.420 30.769 0.00 0.00 0.00 2.29
4375 9205 5.140747 AGGGCGATAGATGACTTATTGAC 57.859 43.478 0.00 0.00 39.76 3.18
4404 9234 6.314400 GCCACTAACAATCTAACAAATACCGA 59.686 38.462 0.00 0.00 0.00 4.69
4416 9246 2.981859 CGTAGGGCCACTAACAATCT 57.018 50.000 6.18 0.00 32.37 2.40
4567 9481 7.859377 CAGCATTTGTCATATGATGAAGTAACC 59.141 37.037 14.16 0.00 40.81 2.85
4599 9514 3.070018 AGTGAGAAATGCCTGAAAGACG 58.930 45.455 0.00 0.00 34.07 4.18
4680 9600 3.808728 TCAAGTTCTCAACCAGGACAAG 58.191 45.455 0.00 0.00 31.92 3.16
4693 9613 4.285517 TCCAGATGCTCTCTTTCAAGTTCT 59.714 41.667 0.00 0.00 29.16 3.01
4712 9632 5.128499 CCATAGAGATTATGGCTAGGTCCAG 59.872 48.000 0.62 0.00 39.89 3.86
4750 9670 6.667848 TCAACCAGGACTCAACTATGATTCTA 59.332 38.462 0.00 0.00 35.98 2.10
4772 9692 6.043590 ACCTTGCTCCTGATCATGTATATCAA 59.956 38.462 0.00 0.00 33.13 2.57
4801 9721 9.909644 TCCGAAAATATTTTGTTTCCGAAATAA 57.090 25.926 17.98 0.00 39.33 1.40
4803 9723 8.996024 ATCCGAAAATATTTTGTTTCCGAAAT 57.004 26.923 17.98 8.79 38.12 2.17
4804 9724 7.542824 GGATCCGAAAATATTTTGTTTCCGAAA 59.457 33.333 17.98 7.15 31.34 3.46
4805 9725 7.030768 GGATCCGAAAATATTTTGTTTCCGAA 58.969 34.615 17.98 0.00 31.34 4.30
4806 9726 6.404954 GGGATCCGAAAATATTTTGTTTCCGA 60.405 38.462 17.98 4.93 31.34 4.55
4807 9727 5.746721 GGGATCCGAAAATATTTTGTTTCCG 59.253 40.000 17.98 13.59 31.34 4.30
4808 9728 6.533723 GTGGGATCCGAAAATATTTTGTTTCC 59.466 38.462 17.98 15.86 31.34 3.13
4809 9729 7.275560 CAGTGGGATCCGAAAATATTTTGTTTC 59.724 37.037 17.98 9.02 0.00 2.78
4810 9730 7.039363 TCAGTGGGATCCGAAAATATTTTGTTT 60.039 33.333 17.98 0.71 0.00 2.83
4811 9731 6.435904 TCAGTGGGATCCGAAAATATTTTGTT 59.564 34.615 17.98 0.45 0.00 2.83
4812 9732 5.949354 TCAGTGGGATCCGAAAATATTTTGT 59.051 36.000 17.98 0.00 0.00 2.83
4813 9733 6.449635 TCAGTGGGATCCGAAAATATTTTG 57.550 37.500 17.98 10.00 0.00 2.44
4814 9734 7.475137 TTTCAGTGGGATCCGAAAATATTTT 57.525 32.000 13.24 13.24 0.00 1.82
4815 9735 7.660030 ATTTCAGTGGGATCCGAAAATATTT 57.340 32.000 14.18 0.00 31.64 1.40
4816 9736 8.796475 CATATTTCAGTGGGATCCGAAAATATT 58.204 33.333 16.37 5.90 31.64 1.28
4817 9737 7.094205 GCATATTTCAGTGGGATCCGAAAATAT 60.094 37.037 14.18 14.34 31.64 1.28
4818 9738 6.206634 GCATATTTCAGTGGGATCCGAAAATA 59.793 38.462 14.18 13.04 31.64 1.40
4819 9739 5.010012 GCATATTTCAGTGGGATCCGAAAAT 59.990 40.000 14.18 11.60 31.64 1.82
4820 9740 4.338118 GCATATTTCAGTGGGATCCGAAAA 59.662 41.667 14.18 5.77 31.64 2.29
4821 9741 3.882888 GCATATTTCAGTGGGATCCGAAA 59.117 43.478 12.99 12.99 0.00 3.46
4822 9742 3.476552 GCATATTTCAGTGGGATCCGAA 58.523 45.455 5.45 0.28 0.00 4.30
4823 9743 2.547855 CGCATATTTCAGTGGGATCCGA 60.548 50.000 5.45 0.00 0.00 4.55
4824 9744 1.800586 CGCATATTTCAGTGGGATCCG 59.199 52.381 5.45 0.00 0.00 4.18
4825 9745 3.126001 TCGCATATTTCAGTGGGATCC 57.874 47.619 1.92 1.92 33.13 3.36
4826 9746 5.695851 ATTTCGCATATTTCAGTGGGATC 57.304 39.130 0.00 0.00 37.19 3.36
4827 9747 6.096705 TGAAATTTCGCATATTTCAGTGGGAT 59.903 34.615 13.34 0.00 43.41 3.85
4828 9748 5.417266 TGAAATTTCGCATATTTCAGTGGGA 59.583 36.000 13.34 0.00 43.41 4.37
4829 9749 5.649557 TGAAATTTCGCATATTTCAGTGGG 58.350 37.500 13.34 0.00 43.41 4.61
4857 9777 9.724839 CCGAAATAATTTCCTAAATAAGCGAAA 57.275 29.630 0.00 0.00 36.30 3.46
4858 9778 9.111613 TCCGAAATAATTTCCTAAATAAGCGAA 57.888 29.630 0.00 0.00 36.30 4.70
4859 9779 8.665643 TCCGAAATAATTTCCTAAATAAGCGA 57.334 30.769 0.00 0.00 36.30 4.93
4860 9780 9.893305 AATCCGAAATAATTTCCTAAATAAGCG 57.107 29.630 0.00 0.00 36.30 4.68
4954 9874 5.417580 CCCCGAAATTTCAAGGTAGATTGAA 59.582 40.000 17.99 0.00 45.12 2.69
4955 9875 4.947388 CCCCGAAATTTCAAGGTAGATTGA 59.053 41.667 17.99 0.00 37.41 2.57
4956 9876 4.705023 ACCCCGAAATTTCAAGGTAGATTG 59.295 41.667 21.74 9.60 32.31 2.67
4957 9877 4.930696 ACCCCGAAATTTCAAGGTAGATT 58.069 39.130 21.74 3.44 32.31 2.40
4958 9878 4.586306 ACCCCGAAATTTCAAGGTAGAT 57.414 40.909 21.74 3.74 32.31 1.98
4959 9879 4.376225 AACCCCGAAATTTCAAGGTAGA 57.624 40.909 22.80 0.00 33.36 2.59
4960 9880 5.005094 TGTAACCCCGAAATTTCAAGGTAG 58.995 41.667 22.80 11.94 33.36 3.18
4961 9881 4.983053 TGTAACCCCGAAATTTCAAGGTA 58.017 39.130 22.80 10.09 33.36 3.08
4962 9882 3.834938 TGTAACCCCGAAATTTCAAGGT 58.165 40.909 18.85 18.85 34.68 3.50
4963 9883 4.857509 TTGTAACCCCGAAATTTCAAGG 57.142 40.909 17.99 17.87 0.00 3.61
4964 9884 5.460748 GTGTTTGTAACCCCGAAATTTCAAG 59.539 40.000 17.99 8.40 0.00 3.02
4965 9885 5.127356 AGTGTTTGTAACCCCGAAATTTCAA 59.873 36.000 17.99 0.20 0.00 2.69
4966 9886 4.645588 AGTGTTTGTAACCCCGAAATTTCA 59.354 37.500 17.99 0.00 0.00 2.69
4967 9887 4.979815 CAGTGTTTGTAACCCCGAAATTTC 59.020 41.667 8.20 8.20 0.00 2.17
4968 9888 4.645588 TCAGTGTTTGTAACCCCGAAATTT 59.354 37.500 0.00 0.00 0.00 1.82
4969 9889 4.208746 TCAGTGTTTGTAACCCCGAAATT 58.791 39.130 0.00 0.00 0.00 1.82
4970 9890 3.822940 TCAGTGTTTGTAACCCCGAAAT 58.177 40.909 0.00 0.00 0.00 2.17
4971 9891 3.278668 TCAGTGTTTGTAACCCCGAAA 57.721 42.857 0.00 0.00 0.00 3.46
4972 9892 3.278668 TTCAGTGTTTGTAACCCCGAA 57.721 42.857 0.00 0.00 0.00 4.30
4973 9893 3.278668 TTTCAGTGTTTGTAACCCCGA 57.721 42.857 0.00 0.00 0.00 5.14
4974 9894 5.636837 CATATTTCAGTGTTTGTAACCCCG 58.363 41.667 0.00 0.00 0.00 5.73
4975 9895 5.407502 GCATATTTCAGTGTTTGTAACCCC 58.592 41.667 0.00 0.00 0.00 4.95
4976 9896 5.092781 CGCATATTTCAGTGTTTGTAACCC 58.907 41.667 0.00 0.00 0.00 4.11
4977 9897 5.933790 TCGCATATTTCAGTGTTTGTAACC 58.066 37.500 0.00 0.00 0.00 2.85
4978 9898 7.845617 TTTCGCATATTTCAGTGTTTGTAAC 57.154 32.000 0.00 0.00 0.00 2.50
4979 9899 9.469807 AAATTTCGCATATTTCAGTGTTTGTAA 57.530 25.926 0.00 0.00 0.00 2.41
4980 9900 9.123709 GAAATTTCGCATATTTCAGTGTTTGTA 57.876 29.630 1.68 0.00 40.22 2.41
4981 9901 7.651304 TGAAATTTCGCATATTTCAGTGTTTGT 59.349 29.630 13.34 0.00 43.41 2.83
4982 9902 8.005662 TGAAATTTCGCATATTTCAGTGTTTG 57.994 30.769 13.34 0.00 43.41 2.93
4983 9903 8.586570 TTGAAATTTCGCATATTTCAGTGTTT 57.413 26.923 13.34 0.00 46.66 2.83
4984 9904 8.586570 TTTGAAATTTCGCATATTTCAGTGTT 57.413 26.923 13.34 0.00 46.66 3.32
4985 9905 8.586570 TTTTGAAATTTCGCATATTTCAGTGT 57.413 26.923 13.34 0.00 46.66 3.55
5009 9929 9.898152 TCAGGGTTTAAAATTTCAGTGAATTTT 57.102 25.926 16.37 16.37 45.84 1.82
5011 9931 9.710900 GATCAGGGTTTAAAATTTCAGTGAATT 57.289 29.630 6.36 0.00 0.00 2.17
5012 9932 8.869109 TGATCAGGGTTTAAAATTTCAGTGAAT 58.131 29.630 6.36 0.00 0.00 2.57
5013 9933 8.243961 TGATCAGGGTTTAAAATTTCAGTGAA 57.756 30.769 0.08 0.08 0.00 3.18
5014 9934 7.039784 CCTGATCAGGGTTTAAAATTTCAGTGA 60.040 37.037 31.14 0.00 44.87 3.41
5015 9935 7.092716 CCTGATCAGGGTTTAAAATTTCAGTG 58.907 38.462 31.14 1.45 44.87 3.66
5016 9936 7.232118 CCTGATCAGGGTTTAAAATTTCAGT 57.768 36.000 31.14 0.00 44.87 3.41
5039 9959 1.742268 GCAGCAGAATTCAGGAACTCC 59.258 52.381 8.44 0.00 34.60 3.85
5040 9960 2.709213 AGCAGCAGAATTCAGGAACTC 58.291 47.619 8.44 0.00 34.60 3.01
5041 9961 2.875094 AGCAGCAGAATTCAGGAACT 57.125 45.000 8.44 0.00 43.88 3.01
5081 10001 0.521291 CAAACCGATTGCCACACGAT 59.479 50.000 0.00 0.00 31.00 3.73
5265 13903 3.842925 TTCCCCTGCCGACTTGTGC 62.843 63.158 0.00 0.00 0.00 4.57
5267 13905 1.228154 GTTTCCCCTGCCGACTTGT 60.228 57.895 0.00 0.00 0.00 3.16
5271 13909 0.955919 CTTCTGTTTCCCCTGCCGAC 60.956 60.000 0.00 0.00 0.00 4.79
5330 13968 0.474184 TAGCATGGAAAGCTAGGCCC 59.526 55.000 0.00 0.00 43.25 5.80
5446 14084 7.609056 AGTGTGGAAGTTTTAGTACGATACAT 58.391 34.615 0.00 0.00 0.00 2.29
5486 14124 6.745159 TTAAGATAAGGCACGCAATTTACA 57.255 33.333 0.00 0.00 0.00 2.41
5504 14142 6.645884 TTACCCCTGCCTTCTATTTTAAGA 57.354 37.500 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.