Multiple sequence alignment - TraesCS6A01G236600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G236600 chr6A 100.000 3127 0 0 1 3127 445780110 445776984 0.000000e+00 5775.0
1 TraesCS6A01G236600 chr6D 93.998 1816 94 8 731 2537 309042572 309040763 0.000000e+00 2736.0
2 TraesCS6A01G236600 chr6D 94.595 259 14 0 2869 3127 465824093 465823835 4.860000e-108 401.0
3 TraesCS6A01G236600 chr6D 81.980 505 52 20 59 538 309044167 309043677 2.920000e-105 392.0
4 TraesCS6A01G236600 chr6B 89.883 1028 61 13 1772 2779 476714974 476713970 0.000000e+00 1282.0
5 TraesCS6A01G236600 chr6B 90.987 821 36 8 601 1419 476716111 476715327 0.000000e+00 1072.0
6 TraesCS6A01G236600 chr6B 94.340 318 13 3 1410 1723 476715308 476714992 1.690000e-132 483.0
7 TraesCS6A01G236600 chr6B 92.708 96 6 1 435 529 476731074 476730979 1.510000e-28 137.0
8 TraesCS6A01G236600 chr3D 95.802 262 10 1 2866 3127 43660607 43660347 3.730000e-114 422.0
9 TraesCS6A01G236600 chr3A 95.769 260 11 0 2868 3127 728326224 728326483 1.340000e-113 420.0
10 TraesCS6A01G236600 chrUn 95.420 262 11 1 2867 3127 15545281 15545020 1.730000e-112 416.0
11 TraesCS6A01G236600 chrUn 95.038 262 12 1 2867 3127 222067311 222067050 8.070000e-111 411.0
12 TraesCS6A01G236600 chr1A 95.000 260 13 0 2868 3127 561376584 561376843 2.900000e-110 409.0
13 TraesCS6A01G236600 chr3B 94.275 262 13 2 2867 3127 378156223 378155963 1.750000e-107 399.0
14 TraesCS6A01G236600 chr3B 94.253 261 14 1 2867 3127 775360663 775360404 6.280000e-107 398.0
15 TraesCS6A01G236600 chr3B 92.446 278 19 2 2851 3127 2332876 2333152 2.260000e-106 396.0
16 TraesCS6A01G236600 chr2B 90.647 139 13 0 1000 1138 551258672 551258810 5.330000e-43 185.0
17 TraesCS6A01G236600 chr2D 89.928 139 14 0 1000 1138 472070134 472070272 2.480000e-41 180.0
18 TraesCS6A01G236600 chr2A 89.928 139 14 0 1000 1138 613439935 613440073 2.480000e-41 180.0
19 TraesCS6A01G236600 chr2A 92.308 65 5 0 304 368 45481645 45481581 3.320000e-15 93.5
20 TraesCS6A01G236600 chr4B 86.486 74 10 0 299 372 519411557 519411484 7.190000e-12 82.4
21 TraesCS6A01G236600 chr4A 89.831 59 6 0 309 367 41852009 41852067 3.340000e-10 76.8
22 TraesCS6A01G236600 chr1B 87.692 65 8 0 187 251 524487871 524487935 3.340000e-10 76.8
23 TraesCS6A01G236600 chr7B 93.478 46 2 1 289 333 552556542 552556587 2.010000e-07 67.6
24 TraesCS6A01G236600 chr5B 87.037 54 5 2 335 386 508873631 508873578 3.370000e-05 60.2
25 TraesCS6A01G236600 chr5A 90.909 44 4 0 335 378 535620179 535620136 3.370000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G236600 chr6A 445776984 445780110 3126 True 5775.000000 5775 100.000000 1 3127 1 chr6A.!!$R1 3126
1 TraesCS6A01G236600 chr6D 309040763 309044167 3404 True 1564.000000 2736 87.989000 59 2537 2 chr6D.!!$R2 2478
2 TraesCS6A01G236600 chr6B 476713970 476716111 2141 True 945.666667 1282 91.736667 601 2779 3 chr6B.!!$R2 2178

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1919 0.10852 ACGCGCCCGAATAAGAAGAA 60.109 50.0 5.73 0.0 38.29 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 3274 0.178981 AAGCAAGCTTTGAGAGGCCA 60.179 50.0 5.01 0.0 31.29 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.730501 TCTGACTCCACGTACTACCG 58.269 55.000 0.00 0.00 0.00 4.02
21 22 1.002430 TCTGACTCCACGTACTACCGT 59.998 52.381 0.00 0.00 42.87 4.83
22 23 1.396301 CTGACTCCACGTACTACCGTC 59.604 57.143 0.00 0.00 39.45 4.79
23 24 0.729690 GACTCCACGTACTACCGTCC 59.270 60.000 0.00 0.00 39.45 4.79
24 25 0.326264 ACTCCACGTACTACCGTCCT 59.674 55.000 0.00 0.00 39.45 3.85
25 26 0.731417 CTCCACGTACTACCGTCCTG 59.269 60.000 0.00 0.00 39.45 3.86
26 27 0.677731 TCCACGTACTACCGTCCTGG 60.678 60.000 0.00 0.00 46.41 4.45
27 28 1.138247 CACGTACTACCGTCCTGGC 59.862 63.158 0.00 0.00 43.94 4.85
28 29 2.401766 ACGTACTACCGTCCTGGCG 61.402 63.158 0.00 3.95 43.94 5.69
29 30 2.103736 GTACTACCGTCCTGGCGC 59.896 66.667 0.00 0.00 43.94 6.53
30 31 3.511595 TACTACCGTCCTGGCGCG 61.512 66.667 0.00 0.00 43.94 6.86
31 32 3.974835 TACTACCGTCCTGGCGCGA 62.975 63.158 12.10 0.00 43.94 5.87
32 33 4.554363 CTACCGTCCTGGCGCGAG 62.554 72.222 12.10 13.07 43.94 5.03
49 50 4.742201 GCTTCCTGCTGACGCCGA 62.742 66.667 0.00 0.00 38.95 5.54
50 51 2.507992 CTTCCTGCTGACGCCGAG 60.508 66.667 0.00 0.00 34.43 4.63
51 52 3.997064 CTTCCTGCTGACGCCGAGG 62.997 68.421 0.00 0.00 32.14 4.63
82 83 1.512735 GCTAGTGGGGAAGGAGGATT 58.487 55.000 0.00 0.00 0.00 3.01
103 105 2.206576 AGAGGAACCCTTCAATGTGC 57.793 50.000 0.00 0.00 31.76 4.57
107 109 1.228552 AACCCTTCAATGTGCCGCT 60.229 52.632 0.00 0.00 0.00 5.52
130 132 1.006571 GTGTCGTCCAAGCGAGGAA 60.007 57.895 1.52 0.00 41.85 3.36
152 154 2.113986 AGGGCGAAACTGCTTGCT 59.886 55.556 0.00 0.00 34.52 3.91
153 155 0.955428 CAGGGCGAAACTGCTTGCTA 60.955 55.000 0.00 0.00 34.52 3.49
154 156 0.955919 AGGGCGAAACTGCTTGCTAC 60.956 55.000 0.00 0.00 34.52 3.58
155 157 0.955919 GGGCGAAACTGCTTGCTACT 60.956 55.000 0.00 0.00 34.52 2.57
156 158 0.875059 GGCGAAACTGCTTGCTACTT 59.125 50.000 0.00 0.00 34.52 2.24
157 159 1.266989 GGCGAAACTGCTTGCTACTTT 59.733 47.619 0.00 0.00 34.52 2.66
158 160 2.575363 GCGAAACTGCTTGCTACTTTC 58.425 47.619 0.00 0.00 0.00 2.62
159 161 2.224314 GCGAAACTGCTTGCTACTTTCT 59.776 45.455 0.00 0.00 0.00 2.52
160 162 3.304057 GCGAAACTGCTTGCTACTTTCTT 60.304 43.478 0.00 0.00 0.00 2.52
161 163 4.214437 CGAAACTGCTTGCTACTTTCTTG 58.786 43.478 0.00 0.00 0.00 3.02
162 164 3.632855 AACTGCTTGCTACTTTCTTGC 57.367 42.857 0.00 0.00 0.00 4.01
163 165 1.532868 ACTGCTTGCTACTTTCTTGCG 59.467 47.619 0.00 0.00 0.00 4.85
169 171 1.790623 TGCTACTTTCTTGCGACGAAC 59.209 47.619 0.00 0.00 0.00 3.95
174 176 1.256895 CTTTCTTGCGACGAACGTTGA 59.743 47.619 17.16 0.00 44.60 3.18
180 182 0.638746 GCGACGAACGTTGATCGATT 59.361 50.000 26.51 3.44 42.76 3.34
201 203 5.885449 TTGGGATCATGGTTTTCTGTTTT 57.115 34.783 0.00 0.00 0.00 2.43
203 205 6.588719 TGGGATCATGGTTTTCTGTTTTAG 57.411 37.500 0.00 0.00 0.00 1.85
265 267 8.774546 TCAGTAGACATCAGATATTCCTTTCT 57.225 34.615 0.00 0.00 0.00 2.52
267 269 9.906660 CAGTAGACATCAGATATTCCTTTCTAC 57.093 37.037 0.00 0.00 35.28 2.59
269 271 6.987386 AGACATCAGATATTCCTTTCTACCG 58.013 40.000 0.00 0.00 0.00 4.02
270 272 6.551601 AGACATCAGATATTCCTTTCTACCGT 59.448 38.462 0.00 0.00 0.00 4.83
317 319 9.813446 AGTACAACCTTCGTTCCTAAATATAAG 57.187 33.333 0.00 0.00 0.00 1.73
383 385 8.603242 ATTTAGGAACATAGCGTATACAAAGG 57.397 34.615 3.32 0.00 0.00 3.11
385 388 6.229936 AGGAACATAGCGTATACAAAGGAA 57.770 37.500 3.32 0.00 0.00 3.36
388 391 6.929606 GGAACATAGCGTATACAAAGGAATCT 59.070 38.462 3.32 0.00 0.00 2.40
392 395 9.998106 ACATAGCGTATACAAAGGAATCTAATT 57.002 29.630 3.32 0.00 0.00 1.40
463 485 3.427503 CGGTTGTTGCTCAAAGTGAAAGT 60.428 43.478 0.00 0.00 37.81 2.66
466 488 4.621068 TGTTGCTCAAAGTGAAAGTGAG 57.379 40.909 0.00 0.00 41.44 3.51
474 497 5.192927 TCAAAGTGAAAGTGAGACCATGTT 58.807 37.500 0.00 0.00 0.00 2.71
496 520 6.208599 TGTTTGGATCAAGTAAATGAGAACCC 59.791 38.462 0.00 0.00 31.76 4.11
503 527 0.913924 TAAATGAGAACCCGGACCCC 59.086 55.000 0.73 0.00 0.00 4.95
511 535 2.313643 AGAACCCGGACCCCAAAAATAT 59.686 45.455 0.73 0.00 0.00 1.28
514 538 3.124861 ACCCGGACCCCAAAAATATAGA 58.875 45.455 0.73 0.00 0.00 1.98
539 1440 6.591448 ACCTCAAATTTGCAATAAAAGCTAGC 59.409 34.615 13.54 6.62 0.00 3.42
541 1442 7.201496 CCTCAAATTTGCAATAAAAGCTAGCAG 60.201 37.037 18.83 0.00 36.47 4.24
564 1495 1.547372 ACTGCCCAGCATGATTGTTTC 59.453 47.619 0.00 0.00 39.69 2.78
569 1500 2.456989 CCAGCATGATTGTTTCGATGC 58.543 47.619 0.00 0.00 39.69 3.91
573 1504 3.441222 AGCATGATTGTTTCGATGCAAGA 59.559 39.130 0.00 0.00 39.39 3.02
577 1508 2.031037 TTGTTTCGATGCAAGAACGC 57.969 45.000 7.38 5.24 0.00 4.84
590 1521 3.989817 GCAAGAACGCATCCATTTCTTTT 59.010 39.130 0.00 0.00 37.46 2.27
591 1522 4.448732 GCAAGAACGCATCCATTTCTTTTT 59.551 37.500 0.00 0.00 37.46 1.94
676 1607 1.066143 AGGCACTTAATCCAGACACGG 60.066 52.381 0.00 0.00 27.25 4.94
701 1632 2.555227 GCCCATGAAAAGAGGAGAACCA 60.555 50.000 0.00 0.00 38.94 3.67
719 1650 2.952310 ACCAGAGAAAGGAAGCAAACAC 59.048 45.455 0.00 0.00 0.00 3.32
720 1651 2.294512 CCAGAGAAAGGAAGCAAACACC 59.705 50.000 0.00 0.00 0.00 4.16
725 1656 1.986882 AAGGAAGCAAACACCAGAGG 58.013 50.000 0.00 0.00 0.00 3.69
727 1658 1.527433 GGAAGCAAACACCAGAGGGC 61.527 60.000 0.00 0.00 37.90 5.19
749 1714 6.593770 GGGCCATTACTTCCAAAATTAAACAG 59.406 38.462 4.39 0.00 0.00 3.16
759 1724 9.528018 CTTCCAAAATTAAACAGTGCTTTTAGA 57.472 29.630 0.00 0.00 0.00 2.10
770 1735 8.409358 AACAGTGCTTTTAGATAGATTGGTTT 57.591 30.769 0.00 0.00 0.00 3.27
894 1859 2.032681 GCCACGCTGGTTCCTCTT 59.967 61.111 6.02 0.00 40.46 2.85
906 1871 3.333680 TGGTTCCTCTTAAAGAGCCCATT 59.666 43.478 0.00 0.00 40.98 3.16
914 1879 1.298859 AAAGAGCCCATTCACGTCGC 61.299 55.000 0.00 0.00 0.00 5.19
954 1919 0.108520 ACGCGCCCGAATAAGAAGAA 60.109 50.000 5.73 0.00 38.29 2.52
960 1925 2.202566 CCCGAATAAGAAGAAGACCGC 58.797 52.381 0.00 0.00 0.00 5.68
1164 2130 3.878667 GCCCCGGCCTCAGCTAAT 61.879 66.667 0.00 0.00 39.73 1.73
1181 2147 5.126396 GCTAATGCTTTTCACCTTGAACT 57.874 39.130 0.00 0.00 34.46 3.01
1212 2179 6.607689 CAATATGTTTCGCTTTTGTGTCCTA 58.392 36.000 0.00 0.00 0.00 2.94
1486 2486 0.324614 TGGCAAATCCGCAGAGAAGA 59.675 50.000 0.00 0.00 37.80 2.87
1542 2542 7.688820 GCATCTTCCCTTCTCAGAGATTATTCA 60.689 40.741 0.00 0.00 0.00 2.57
1546 2546 4.342378 CCCTTCTCAGAGATTATTCACCGA 59.658 45.833 0.00 0.00 0.00 4.69
1563 2563 0.999406 CGATTCCCGTCACATGTGTC 59.001 55.000 24.63 18.38 0.00 3.67
1564 2564 1.671556 CGATTCCCGTCACATGTGTCA 60.672 52.381 24.63 4.31 0.00 3.58
1705 2706 2.173569 CCCATTGGAGAAGGTAAGAGGG 59.826 54.545 3.62 0.00 0.00 4.30
1709 2710 3.776731 TGGAGAAGGTAAGAGGGATGA 57.223 47.619 0.00 0.00 0.00 2.92
1752 2764 1.661341 GCAAGAGGCAGACATCGATT 58.339 50.000 0.00 0.00 43.97 3.34
1779 2791 6.321945 AGTTGCCAAATATACATGCAAGATCA 59.678 34.615 0.00 0.00 42.04 2.92
1798 2810 3.238441 TCACGAAAATAATTTGGCACGC 58.762 40.909 0.00 0.00 0.00 5.34
1799 2811 2.026272 CACGAAAATAATTTGGCACGCG 59.974 45.455 3.53 3.53 0.00 6.01
1809 2821 4.624336 ATTTGGCACGCGAATAATAACA 57.376 36.364 15.93 0.00 0.00 2.41
1865 2877 1.523938 GGAGGGCGAATGCTACCAC 60.524 63.158 0.00 0.00 42.25 4.16
1925 2937 2.442272 ACCTCCTCGTATGCCGCT 60.442 61.111 0.00 0.00 36.19 5.52
2026 3038 1.002900 CGCGCAAACAAAGAAGGAGAA 60.003 47.619 8.75 0.00 0.00 2.87
2027 3039 2.350772 CGCGCAAACAAAGAAGGAGAAT 60.351 45.455 8.75 0.00 0.00 2.40
2122 3137 0.955428 GCACCACCGCAAGATGAAGA 60.955 55.000 0.00 0.00 43.02 2.87
2146 3164 6.934048 ATAGAGCAAAGATTAGGAGCAAAC 57.066 37.500 0.00 0.00 0.00 2.93
2245 3274 4.467438 CCTTCCCTGCTTCCATTTTTGTAT 59.533 41.667 0.00 0.00 0.00 2.29
2352 3381 6.520272 TGCACAGCCAAAAATATTACTTTGT 58.480 32.000 10.32 0.28 31.84 2.83
2356 3385 9.469807 CACAGCCAAAAATATTACTTTGTGTTA 57.530 29.630 10.32 0.00 31.84 2.41
2418 3447 3.077359 AGACATTTCTTTTGAGGCCTCG 58.923 45.455 27.43 13.45 0.00 4.63
2441 3470 9.611284 CTCGTTGATTCAAATGATTTGTAAAGA 57.389 29.630 16.62 13.24 41.36 2.52
2479 3508 3.477210 GGGTTTCTAGCCTACATCTGG 57.523 52.381 0.00 0.00 38.92 3.86
2514 3543 7.959658 AATCATGAACATAACATCCCTTTCA 57.040 32.000 0.00 0.00 0.00 2.69
2527 3556 5.710099 ACATCCCTTTCATGTACGATGTTTT 59.290 36.000 0.00 0.00 37.62 2.43
2537 3566 7.738345 TCATGTACGATGTTTTGACATACTTG 58.262 34.615 0.00 0.00 0.00 3.16
2589 3618 7.247728 TGCATTTCGGTATTTCTTTATGACAC 58.752 34.615 0.00 0.00 0.00 3.67
2592 3621 6.978343 TTCGGTATTTCTTTATGACACCTG 57.022 37.500 0.00 0.00 0.00 4.00
2604 3633 8.807118 TCTTTATGACACCTGATATGTATCTCC 58.193 37.037 2.08 0.00 33.88 3.71
2615 3644 1.843368 TGTATCTCCGGACGAAACCT 58.157 50.000 0.00 0.00 0.00 3.50
2623 3652 1.944709 CCGGACGAAACCTTTCTTTGT 59.055 47.619 0.00 0.00 35.07 2.83
2631 3660 5.221986 ACGAAACCTTTCTTTGTATACCCCT 60.222 40.000 0.00 0.00 35.07 4.79
2667 3696 2.694628 GTGCATCATTTTATGGCCTCCA 59.305 45.455 3.32 0.00 38.19 3.86
2672 3701 5.279809 GCATCATTTTATGGCCTCCATTCAT 60.280 40.000 3.32 0.00 42.23 2.57
2673 3702 5.794726 TCATTTTATGGCCTCCATTCATG 57.205 39.130 3.32 4.89 42.23 3.07
2716 3750 6.432403 TTTGTTGGATTTTTAGCCCAATCT 57.568 33.333 0.00 0.00 41.41 2.40
2719 3753 6.489603 TGTTGGATTTTTAGCCCAATCTCTA 58.510 36.000 0.00 0.00 41.41 2.43
2725 3759 8.918116 GGATTTTTAGCCCAATCTCTATTTTCT 58.082 33.333 0.00 0.00 31.16 2.52
2755 3789 3.873781 TCGGGGCGAGATTCAATTT 57.126 47.368 0.00 0.00 0.00 1.82
2773 3807 2.773993 TTGAGGGGGTCGATTGTAAC 57.226 50.000 0.00 0.00 0.00 2.50
2779 3813 1.612199 GGGGTCGATTGTAACAGCCAA 60.612 52.381 0.00 0.00 0.00 4.52
2780 3814 2.156098 GGGTCGATTGTAACAGCCAAA 58.844 47.619 0.00 0.00 0.00 3.28
2781 3815 2.161609 GGGTCGATTGTAACAGCCAAAG 59.838 50.000 0.00 0.00 0.00 2.77
2782 3816 3.071479 GGTCGATTGTAACAGCCAAAGA 58.929 45.455 0.00 0.00 0.00 2.52
2783 3817 3.125316 GGTCGATTGTAACAGCCAAAGAG 59.875 47.826 0.00 0.00 0.00 2.85
2784 3818 2.742053 TCGATTGTAACAGCCAAAGAGC 59.258 45.455 0.00 0.00 0.00 4.09
2785 3819 2.483877 CGATTGTAACAGCCAAAGAGCA 59.516 45.455 0.00 0.00 34.23 4.26
2786 3820 3.058293 CGATTGTAACAGCCAAAGAGCAA 60.058 43.478 0.00 0.00 34.23 3.91
2787 3821 3.708563 TTGTAACAGCCAAAGAGCAAC 57.291 42.857 0.00 0.00 34.23 4.17
2788 3822 2.649190 TGTAACAGCCAAAGAGCAACA 58.351 42.857 0.00 0.00 34.23 3.33
2789 3823 3.221771 TGTAACAGCCAAAGAGCAACAT 58.778 40.909 0.00 0.00 34.23 2.71
2790 3824 4.393834 TGTAACAGCCAAAGAGCAACATA 58.606 39.130 0.00 0.00 34.23 2.29
2791 3825 5.009631 TGTAACAGCCAAAGAGCAACATAT 58.990 37.500 0.00 0.00 34.23 1.78
2792 3826 5.476599 TGTAACAGCCAAAGAGCAACATATT 59.523 36.000 0.00 0.00 34.23 1.28
2793 3827 5.473066 AACAGCCAAAGAGCAACATATTT 57.527 34.783 0.00 0.00 34.23 1.40
2794 3828 6.588719 AACAGCCAAAGAGCAACATATTTA 57.411 33.333 0.00 0.00 34.23 1.40
2795 3829 6.780457 ACAGCCAAAGAGCAACATATTTAT 57.220 33.333 0.00 0.00 34.23 1.40
2796 3830 7.174107 ACAGCCAAAGAGCAACATATTTATT 57.826 32.000 0.00 0.00 34.23 1.40
2797 3831 8.292444 ACAGCCAAAGAGCAACATATTTATTA 57.708 30.769 0.00 0.00 34.23 0.98
2798 3832 8.408601 ACAGCCAAAGAGCAACATATTTATTAG 58.591 33.333 0.00 0.00 34.23 1.73
2799 3833 7.864379 CAGCCAAAGAGCAACATATTTATTAGG 59.136 37.037 0.00 0.00 34.23 2.69
2800 3834 7.779798 AGCCAAAGAGCAACATATTTATTAGGA 59.220 33.333 0.00 0.00 34.23 2.94
2801 3835 8.413229 GCCAAAGAGCAACATATTTATTAGGAA 58.587 33.333 0.00 0.00 0.00 3.36
2817 3851 9.752961 TTTATTAGGAATTGATTGTGCATCATG 57.247 29.630 0.00 0.00 41.82 3.07
2818 3852 7.591421 ATTAGGAATTGATTGTGCATCATGA 57.409 32.000 0.00 0.00 41.82 3.07
2819 3853 5.258456 AGGAATTGATTGTGCATCATGAC 57.742 39.130 0.00 0.00 41.82 3.06
2820 3854 4.098960 AGGAATTGATTGTGCATCATGACC 59.901 41.667 0.00 0.00 41.82 4.02
2821 3855 4.142116 GGAATTGATTGTGCATCATGACCA 60.142 41.667 0.00 0.00 41.82 4.02
2822 3856 5.452776 GGAATTGATTGTGCATCATGACCAT 60.453 40.000 0.00 0.00 41.82 3.55
2823 3857 4.642445 TTGATTGTGCATCATGACCATC 57.358 40.909 0.00 0.00 41.82 3.51
2824 3858 3.893521 TGATTGTGCATCATGACCATCT 58.106 40.909 0.00 0.00 36.94 2.90
2825 3859 3.881089 TGATTGTGCATCATGACCATCTC 59.119 43.478 0.00 0.00 36.94 2.75
2826 3860 3.353370 TTGTGCATCATGACCATCTCA 57.647 42.857 0.00 0.00 0.00 3.27
2827 3861 3.570912 TGTGCATCATGACCATCTCAT 57.429 42.857 0.00 0.00 40.59 2.90
2828 3862 4.693042 TGTGCATCATGACCATCTCATA 57.307 40.909 0.00 0.00 37.53 2.15
2829 3863 5.038651 TGTGCATCATGACCATCTCATAA 57.961 39.130 0.00 0.00 37.53 1.90
2830 3864 5.061179 TGTGCATCATGACCATCTCATAAG 58.939 41.667 0.00 0.00 37.53 1.73
2831 3865 4.070009 TGCATCATGACCATCTCATAAGC 58.930 43.478 0.00 0.00 37.53 3.09
2832 3866 4.070009 GCATCATGACCATCTCATAAGCA 58.930 43.478 0.00 0.00 37.53 3.91
2833 3867 4.700692 GCATCATGACCATCTCATAAGCAT 59.299 41.667 0.00 0.00 37.53 3.79
2834 3868 5.163744 GCATCATGACCATCTCATAAGCATC 60.164 44.000 0.00 0.00 37.53 3.91
2835 3869 5.556006 TCATGACCATCTCATAAGCATCA 57.444 39.130 0.00 0.00 37.53 3.07
2836 3870 6.123045 TCATGACCATCTCATAAGCATCAT 57.877 37.500 0.00 0.00 37.53 2.45
2837 3871 6.540083 TCATGACCATCTCATAAGCATCATT 58.460 36.000 0.00 0.00 37.53 2.57
2838 3872 7.002276 TCATGACCATCTCATAAGCATCATTT 58.998 34.615 0.00 0.00 37.53 2.32
2839 3873 7.504574 TCATGACCATCTCATAAGCATCATTTT 59.495 33.333 0.00 0.00 37.53 1.82
2840 3874 7.268199 TGACCATCTCATAAGCATCATTTTC 57.732 36.000 0.00 0.00 0.00 2.29
2841 3875 6.829811 TGACCATCTCATAAGCATCATTTTCA 59.170 34.615 0.00 0.00 0.00 2.69
2842 3876 7.504574 TGACCATCTCATAAGCATCATTTTCAT 59.495 33.333 0.00 0.00 0.00 2.57
2843 3877 8.246430 ACCATCTCATAAGCATCATTTTCATT 57.754 30.769 0.00 0.00 0.00 2.57
2844 3878 8.358148 ACCATCTCATAAGCATCATTTTCATTC 58.642 33.333 0.00 0.00 0.00 2.67
2845 3879 8.357402 CCATCTCATAAGCATCATTTTCATTCA 58.643 33.333 0.00 0.00 0.00 2.57
2846 3880 9.914131 CATCTCATAAGCATCATTTTCATTCAT 57.086 29.630 0.00 0.00 0.00 2.57
2891 3925 5.391312 TTTTAGAGAAAAGGCATGAAGGC 57.609 39.130 0.00 0.00 44.61 4.35
2909 3943 6.036577 GAAGGCCCAACTTCAAATTAATGA 57.963 37.500 0.00 0.00 44.82 2.57
2910 3944 6.432403 AAGGCCCAACTTCAAATTAATGAA 57.568 33.333 0.00 0.00 37.70 2.57
2920 3954 7.529880 CTTCAAATTAATGAAGCCATCAACC 57.470 36.000 6.89 0.00 46.88 3.77
2921 3955 5.649557 TCAAATTAATGAAGCCATCAACCG 58.350 37.500 0.00 0.00 42.54 4.44
2922 3956 4.654091 AATTAATGAAGCCATCAACCGG 57.346 40.909 0.00 0.00 42.54 5.28
2928 3962 2.908015 GCCATCAACCGGCTAGGA 59.092 61.111 0.00 0.00 46.56 2.94
2929 3963 1.451936 GCCATCAACCGGCTAGGAT 59.548 57.895 0.00 0.00 46.56 3.24
2930 3964 0.685097 GCCATCAACCGGCTAGGATA 59.315 55.000 0.00 0.00 46.56 2.59
2931 3965 1.608283 GCCATCAACCGGCTAGGATAC 60.608 57.143 0.00 0.00 46.56 2.24
2932 3966 1.691976 CCATCAACCGGCTAGGATACA 59.308 52.381 0.00 0.00 45.00 2.29
2933 3967 2.104111 CCATCAACCGGCTAGGATACAA 59.896 50.000 0.00 0.00 45.00 2.41
2934 3968 3.244561 CCATCAACCGGCTAGGATACAAT 60.245 47.826 0.00 0.00 45.00 2.71
2935 3969 3.469008 TCAACCGGCTAGGATACAATG 57.531 47.619 0.00 0.00 45.00 2.82
2936 3970 2.104111 TCAACCGGCTAGGATACAATGG 59.896 50.000 0.00 0.00 45.00 3.16
2937 3971 1.802553 ACCGGCTAGGATACAATGGT 58.197 50.000 0.00 0.00 45.00 3.55
2938 3972 1.416401 ACCGGCTAGGATACAATGGTG 59.584 52.381 0.00 0.00 45.00 4.17
2939 3973 1.512926 CGGCTAGGATACAATGGTGC 58.487 55.000 0.00 0.00 41.41 5.01
2940 3974 1.070758 CGGCTAGGATACAATGGTGCT 59.929 52.381 0.00 0.00 41.41 4.40
2941 3975 2.498167 GGCTAGGATACAATGGTGCTG 58.502 52.381 0.00 0.00 41.41 4.41
2942 3976 2.104792 GGCTAGGATACAATGGTGCTGA 59.895 50.000 0.00 0.00 41.41 4.26
2943 3977 3.433598 GGCTAGGATACAATGGTGCTGAA 60.434 47.826 0.00 0.00 41.41 3.02
2944 3978 4.392940 GCTAGGATACAATGGTGCTGAAT 58.607 43.478 0.00 0.00 41.41 2.57
2945 3979 4.823989 GCTAGGATACAATGGTGCTGAATT 59.176 41.667 0.00 0.00 41.41 2.17
2946 3980 5.997746 GCTAGGATACAATGGTGCTGAATTA 59.002 40.000 0.00 0.00 41.41 1.40
2947 3981 6.073003 GCTAGGATACAATGGTGCTGAATTAC 60.073 42.308 0.00 0.00 41.41 1.89
2948 3982 5.754782 AGGATACAATGGTGCTGAATTACA 58.245 37.500 0.00 0.00 41.41 2.41
2949 3983 6.186957 AGGATACAATGGTGCTGAATTACAA 58.813 36.000 0.00 0.00 41.41 2.41
2950 3984 6.663093 AGGATACAATGGTGCTGAATTACAAA 59.337 34.615 0.00 0.00 41.41 2.83
2951 3985 6.974622 GGATACAATGGTGCTGAATTACAAAG 59.025 38.462 0.00 0.00 0.00 2.77
2952 3986 5.138125 ACAATGGTGCTGAATTACAAAGG 57.862 39.130 0.00 0.00 0.00 3.11
2953 3987 3.874392 ATGGTGCTGAATTACAAAGGC 57.126 42.857 0.00 0.00 0.00 4.35
2954 3988 2.591923 TGGTGCTGAATTACAAAGGCA 58.408 42.857 0.00 0.00 0.00 4.75
2955 3989 2.961741 TGGTGCTGAATTACAAAGGCAA 59.038 40.909 0.00 0.00 31.01 4.52
2956 3990 3.386078 TGGTGCTGAATTACAAAGGCAAA 59.614 39.130 0.00 0.00 31.01 3.68
2957 3991 3.989817 GGTGCTGAATTACAAAGGCAAAG 59.010 43.478 0.00 0.00 31.01 2.77
2958 3992 4.261994 GGTGCTGAATTACAAAGGCAAAGA 60.262 41.667 0.00 0.00 31.01 2.52
2959 3993 4.681483 GTGCTGAATTACAAAGGCAAAGAC 59.319 41.667 0.00 0.00 31.01 3.01
2960 3994 4.584325 TGCTGAATTACAAAGGCAAAGACT 59.416 37.500 0.00 0.00 0.00 3.24
2961 3995 5.068987 TGCTGAATTACAAAGGCAAAGACTT 59.931 36.000 0.00 0.00 28.57 3.01
2962 3996 5.403466 GCTGAATTACAAAGGCAAAGACTTG 59.597 40.000 0.00 0.00 27.73 3.16
2963 3997 6.707440 TGAATTACAAAGGCAAAGACTTGA 57.293 33.333 0.00 0.00 34.14 3.02
2964 3998 6.503524 TGAATTACAAAGGCAAAGACTTGAC 58.496 36.000 0.00 0.00 41.37 3.18
2965 3999 4.911514 TTACAAAGGCAAAGACTTGACC 57.088 40.909 0.00 0.00 42.11 4.02
2966 4000 2.733956 ACAAAGGCAAAGACTTGACCA 58.266 42.857 8.94 0.00 42.11 4.02
2967 4001 3.096092 ACAAAGGCAAAGACTTGACCAA 58.904 40.909 8.94 0.00 42.11 3.67
2968 4002 3.513515 ACAAAGGCAAAGACTTGACCAAA 59.486 39.130 8.94 0.00 42.11 3.28
2969 4003 4.020662 ACAAAGGCAAAGACTTGACCAAAA 60.021 37.500 8.94 0.00 42.11 2.44
2970 4004 4.817318 AAGGCAAAGACTTGACCAAAAA 57.183 36.364 8.94 0.00 42.11 1.94
2971 4005 4.123497 AGGCAAAGACTTGACCAAAAAC 57.877 40.909 8.94 0.00 42.11 2.43
2972 4006 3.769300 AGGCAAAGACTTGACCAAAAACT 59.231 39.130 8.94 0.00 42.11 2.66
2973 4007 3.865164 GGCAAAGACTTGACCAAAAACTG 59.135 43.478 2.56 0.00 34.08 3.16
2974 4008 4.381505 GGCAAAGACTTGACCAAAAACTGA 60.382 41.667 2.56 0.00 34.08 3.41
2975 4009 5.167845 GCAAAGACTTGACCAAAAACTGAA 58.832 37.500 0.00 0.00 34.14 3.02
2976 4010 5.637387 GCAAAGACTTGACCAAAAACTGAAA 59.363 36.000 0.00 0.00 34.14 2.69
2977 4011 6.147000 GCAAAGACTTGACCAAAAACTGAAAA 59.853 34.615 0.00 0.00 34.14 2.29
2978 4012 7.307692 GCAAAGACTTGACCAAAAACTGAAAAA 60.308 33.333 0.00 0.00 34.14 1.94
2979 4013 8.720562 CAAAGACTTGACCAAAAACTGAAAAAT 58.279 29.630 0.00 0.00 34.14 1.82
2980 4014 9.936759 AAAGACTTGACCAAAAACTGAAAAATA 57.063 25.926 0.00 0.00 0.00 1.40
2981 4015 8.926715 AGACTTGACCAAAAACTGAAAAATAC 57.073 30.769 0.00 0.00 0.00 1.89
2982 4016 8.527810 AGACTTGACCAAAAACTGAAAAATACA 58.472 29.630 0.00 0.00 0.00 2.29
2983 4017 9.313118 GACTTGACCAAAAACTGAAAAATACAT 57.687 29.630 0.00 0.00 0.00 2.29
2984 4018 9.097257 ACTTGACCAAAAACTGAAAAATACATG 57.903 29.630 0.00 0.00 0.00 3.21
2985 4019 7.475771 TGACCAAAAACTGAAAAATACATGC 57.524 32.000 0.00 0.00 0.00 4.06
2986 4020 6.481644 TGACCAAAAACTGAAAAATACATGCC 59.518 34.615 0.00 0.00 0.00 4.40
2987 4021 6.352516 ACCAAAAACTGAAAAATACATGCCA 58.647 32.000 0.00 0.00 0.00 4.92
2988 4022 6.825721 ACCAAAAACTGAAAAATACATGCCAA 59.174 30.769 0.00 0.00 0.00 4.52
2989 4023 7.337942 ACCAAAAACTGAAAAATACATGCCAAA 59.662 29.630 0.00 0.00 0.00 3.28
2990 4024 8.351461 CCAAAAACTGAAAAATACATGCCAAAT 58.649 29.630 0.00 0.00 0.00 2.32
2991 4025 9.733219 CAAAAACTGAAAAATACATGCCAAATT 57.267 25.926 0.00 0.00 0.00 1.82
2992 4026 9.949174 AAAAACTGAAAAATACATGCCAAATTC 57.051 25.926 0.00 0.00 0.00 2.17
2993 4027 8.674263 AAACTGAAAAATACATGCCAAATTCA 57.326 26.923 0.00 0.00 0.00 2.57
2994 4028 7.656707 ACTGAAAAATACATGCCAAATTCAC 57.343 32.000 0.00 0.00 0.00 3.18
2995 4029 7.444299 ACTGAAAAATACATGCCAAATTCACT 58.556 30.769 0.00 0.00 0.00 3.41
2996 4030 8.584157 ACTGAAAAATACATGCCAAATTCACTA 58.416 29.630 0.00 0.00 0.00 2.74
2997 4031 8.755696 TGAAAAATACATGCCAAATTCACTAC 57.244 30.769 0.00 0.00 0.00 2.73
2998 4032 7.540400 TGAAAAATACATGCCAAATTCACTACG 59.460 33.333 0.00 0.00 0.00 3.51
2999 4033 6.751514 AAATACATGCCAAATTCACTACGA 57.248 33.333 0.00 0.00 0.00 3.43
3000 4034 5.734855 ATACATGCCAAATTCACTACGAC 57.265 39.130 0.00 0.00 0.00 4.34
3001 4035 2.747446 ACATGCCAAATTCACTACGACC 59.253 45.455 0.00 0.00 0.00 4.79
3002 4036 1.816074 TGCCAAATTCACTACGACCC 58.184 50.000 0.00 0.00 0.00 4.46
3003 4037 0.725117 GCCAAATTCACTACGACCCG 59.275 55.000 0.00 0.00 0.00 5.28
3004 4038 1.365699 CCAAATTCACTACGACCCGG 58.634 55.000 0.00 0.00 0.00 5.73
3005 4039 1.066716 CCAAATTCACTACGACCCGGA 60.067 52.381 0.73 0.00 0.00 5.14
3006 4040 2.268298 CAAATTCACTACGACCCGGAG 58.732 52.381 0.73 0.00 44.37 4.63
3007 4041 0.175073 AATTCACTACGACCCGGAGC 59.825 55.000 0.73 0.00 42.26 4.70
3008 4042 0.968901 ATTCACTACGACCCGGAGCA 60.969 55.000 0.73 0.00 42.26 4.26
3009 4043 1.592400 TTCACTACGACCCGGAGCAG 61.592 60.000 0.73 0.00 42.26 4.24
3010 4044 3.450115 ACTACGACCCGGAGCAGC 61.450 66.667 0.73 0.00 42.26 5.25
3011 4045 3.449227 CTACGACCCGGAGCAGCA 61.449 66.667 0.73 0.00 28.53 4.41
3012 4046 3.417275 CTACGACCCGGAGCAGCAG 62.417 68.421 0.73 0.00 28.53 4.24
3023 4057 3.046087 GCAGCAGCGAACAGAGCA 61.046 61.111 0.00 0.00 37.01 4.26
3024 4058 2.396955 GCAGCAGCGAACAGAGCAT 61.397 57.895 0.00 0.00 37.01 3.79
3025 4059 1.714414 CAGCAGCGAACAGAGCATC 59.286 57.895 0.00 0.00 37.01 3.91
3026 4060 1.017701 CAGCAGCGAACAGAGCATCA 61.018 55.000 0.00 0.00 37.82 3.07
3027 4061 0.321034 AGCAGCGAACAGAGCATCAA 60.321 50.000 0.00 0.00 37.82 2.57
3028 4062 0.096628 GCAGCGAACAGAGCATCAAG 59.903 55.000 0.00 0.00 37.82 3.02
3029 4063 1.718396 CAGCGAACAGAGCATCAAGA 58.282 50.000 0.00 0.00 37.82 3.02
3030 4064 1.659601 CAGCGAACAGAGCATCAAGAG 59.340 52.381 0.00 0.00 37.82 2.85
3031 4065 1.547820 AGCGAACAGAGCATCAAGAGA 59.452 47.619 0.00 0.00 37.82 3.10
3032 4066 2.028658 AGCGAACAGAGCATCAAGAGAA 60.029 45.455 0.00 0.00 37.82 2.87
3033 4067 2.738846 GCGAACAGAGCATCAAGAGAAA 59.261 45.455 0.00 0.00 37.82 2.52
3034 4068 3.424170 GCGAACAGAGCATCAAGAGAAAC 60.424 47.826 0.00 0.00 37.82 2.78
3035 4069 3.993081 CGAACAGAGCATCAAGAGAAACT 59.007 43.478 0.00 0.00 37.82 2.66
3036 4070 4.143158 CGAACAGAGCATCAAGAGAAACTG 60.143 45.833 0.00 0.00 37.82 3.16
3037 4071 3.072944 ACAGAGCATCAAGAGAAACTGC 58.927 45.455 0.00 0.00 37.82 4.40
3038 4072 2.093941 CAGAGCATCAAGAGAAACTGCG 59.906 50.000 0.00 0.00 37.82 5.18
3039 4073 2.028658 AGAGCATCAAGAGAAACTGCGA 60.029 45.455 0.00 0.00 37.82 5.10
3040 4074 2.935201 GAGCATCAAGAGAAACTGCGAT 59.065 45.455 0.00 0.00 37.88 4.58
3041 4075 2.935201 AGCATCAAGAGAAACTGCGATC 59.065 45.455 0.00 0.00 37.88 3.69
3042 4076 2.674852 GCATCAAGAGAAACTGCGATCA 59.325 45.455 0.00 0.00 0.00 2.92
3043 4077 3.125829 GCATCAAGAGAAACTGCGATCAA 59.874 43.478 0.00 0.00 0.00 2.57
3044 4078 4.727162 GCATCAAGAGAAACTGCGATCAAG 60.727 45.833 0.00 0.00 0.00 3.02
3045 4079 2.738846 TCAAGAGAAACTGCGATCAAGC 59.261 45.455 0.00 0.00 37.71 4.01
3046 4080 1.731720 AGAGAAACTGCGATCAAGCC 58.268 50.000 0.00 0.00 36.02 4.35
3047 4081 0.371645 GAGAAACTGCGATCAAGCCG 59.628 55.000 0.00 0.00 36.02 5.52
3054 4088 4.207281 CGATCAAGCCGCCGGAGA 62.207 66.667 7.68 0.64 0.00 3.71
3055 4089 2.423446 GATCAAGCCGCCGGAGAT 59.577 61.111 7.68 6.60 0.00 2.75
3056 4090 1.666234 GATCAAGCCGCCGGAGATC 60.666 63.158 7.68 12.46 0.00 2.75
3057 4091 2.093537 GATCAAGCCGCCGGAGATCT 62.094 60.000 19.70 0.00 33.94 2.75
3058 4092 1.690219 ATCAAGCCGCCGGAGATCTT 61.690 55.000 7.68 6.22 0.00 2.40
3059 4093 2.176273 CAAGCCGCCGGAGATCTTG 61.176 63.158 19.35 19.35 0.00 3.02
3060 4094 2.359169 AAGCCGCCGGAGATCTTGA 61.359 57.895 7.68 0.00 0.00 3.02
3061 4095 2.279784 GCCGCCGGAGATCTTGAG 60.280 66.667 7.68 0.00 0.00 3.02
3062 4096 2.279784 CCGCCGGAGATCTTGAGC 60.280 66.667 5.05 0.00 0.00 4.26
3063 4097 2.496341 CGCCGGAGATCTTGAGCA 59.504 61.111 5.05 0.00 0.00 4.26
3064 4098 1.880340 CGCCGGAGATCTTGAGCAC 60.880 63.158 5.05 0.00 0.00 4.40
3065 4099 1.219124 GCCGGAGATCTTGAGCACA 59.781 57.895 5.05 0.00 0.00 4.57
3066 4100 1.086634 GCCGGAGATCTTGAGCACAC 61.087 60.000 5.05 0.00 0.00 3.82
3067 4101 0.247460 CCGGAGATCTTGAGCACACA 59.753 55.000 0.00 0.00 0.00 3.72
3068 4102 1.638133 CGGAGATCTTGAGCACACAG 58.362 55.000 0.00 0.00 0.00 3.66
3069 4103 1.203287 CGGAGATCTTGAGCACACAGA 59.797 52.381 0.00 0.00 0.00 3.41
3070 4104 2.353109 CGGAGATCTTGAGCACACAGAA 60.353 50.000 0.00 0.00 0.00 3.02
3071 4105 2.999355 GGAGATCTTGAGCACACAGAAC 59.001 50.000 0.00 0.00 0.00 3.01
3072 4106 3.555795 GGAGATCTTGAGCACACAGAACA 60.556 47.826 0.00 0.00 0.00 3.18
3073 4107 3.661944 AGATCTTGAGCACACAGAACAG 58.338 45.455 0.00 0.00 0.00 3.16
3074 4108 1.586422 TCTTGAGCACACAGAACAGC 58.414 50.000 0.00 0.00 0.00 4.40
3075 4109 1.134431 TCTTGAGCACACAGAACAGCA 60.134 47.619 0.00 0.00 0.00 4.41
3076 4110 1.263484 CTTGAGCACACAGAACAGCAG 59.737 52.381 0.00 0.00 0.00 4.24
3077 4111 0.533531 TGAGCACACAGAACAGCAGG 60.534 55.000 0.00 0.00 0.00 4.85
3078 4112 1.228063 AGCACACAGAACAGCAGGG 60.228 57.895 0.00 0.00 0.00 4.45
3079 4113 2.912624 GCACACAGAACAGCAGGGC 61.913 63.158 0.00 0.00 0.00 5.19
3080 4114 2.113986 ACACAGAACAGCAGGGCC 59.886 61.111 0.00 0.00 0.00 5.80
3081 4115 3.052082 CACAGAACAGCAGGGCCG 61.052 66.667 0.00 0.00 0.00 6.13
3082 4116 3.241530 ACAGAACAGCAGGGCCGA 61.242 61.111 0.00 0.00 0.00 5.54
3083 4117 2.032528 CAGAACAGCAGGGCCGAA 59.967 61.111 0.00 0.00 0.00 4.30
3084 4118 2.037136 CAGAACAGCAGGGCCGAAG 61.037 63.158 0.00 0.00 0.00 3.79
3085 4119 3.435186 GAACAGCAGGGCCGAAGC 61.435 66.667 10.11 10.11 38.76 3.86
3096 4130 4.749310 CCGAAGCCACTCTGCGCT 62.749 66.667 9.73 0.00 42.62 5.92
3097 4131 3.485431 CGAAGCCACTCTGCGCTG 61.485 66.667 9.73 8.88 36.98 5.18
3098 4132 2.047844 GAAGCCACTCTGCGCTGA 60.048 61.111 16.55 16.55 34.94 4.26
3099 4133 2.358003 AAGCCACTCTGCGCTGAC 60.358 61.111 13.46 3.72 34.94 3.51
3100 4134 3.169155 AAGCCACTCTGCGCTGACA 62.169 57.895 13.46 0.00 34.94 3.58
3101 4135 2.665008 AAGCCACTCTGCGCTGACAA 62.665 55.000 13.46 0.00 34.94 3.18
3102 4136 2.037136 GCCACTCTGCGCTGACAAT 61.037 57.895 13.46 0.00 0.00 2.71
3103 4137 1.580845 GCCACTCTGCGCTGACAATT 61.581 55.000 13.46 0.00 0.00 2.32
3104 4138 0.167470 CCACTCTGCGCTGACAATTG 59.833 55.000 13.46 3.24 0.00 2.32
3105 4139 0.453950 CACTCTGCGCTGACAATTGC 60.454 55.000 13.46 0.00 0.00 3.56
3106 4140 1.136147 CTCTGCGCTGACAATTGCC 59.864 57.895 13.46 0.00 0.00 4.52
3107 4141 2.202388 CTGCGCTGACAATTGCCG 60.202 61.111 9.73 4.79 0.00 5.69
3108 4142 2.969806 CTGCGCTGACAATTGCCGT 61.970 57.895 9.73 0.00 0.00 5.68
3109 4143 2.502510 GCGCTGACAATTGCCGTG 60.503 61.111 5.05 2.03 0.00 4.94
3110 4144 2.176546 CGCTGACAATTGCCGTGG 59.823 61.111 5.05 0.00 0.00 4.94
3111 4145 2.324330 CGCTGACAATTGCCGTGGA 61.324 57.895 5.05 0.00 0.00 4.02
3112 4146 1.210155 GCTGACAATTGCCGTGGAC 59.790 57.895 5.05 0.00 0.00 4.02
3113 4147 1.514678 GCTGACAATTGCCGTGGACA 61.515 55.000 5.05 0.00 0.00 4.02
3114 4148 1.167851 CTGACAATTGCCGTGGACAT 58.832 50.000 5.05 0.00 0.00 3.06
3115 4149 0.880441 TGACAATTGCCGTGGACATG 59.120 50.000 5.05 0.00 0.00 3.21
3116 4150 1.164411 GACAATTGCCGTGGACATGA 58.836 50.000 5.05 0.00 0.00 3.07
3117 4151 1.539388 GACAATTGCCGTGGACATGAA 59.461 47.619 5.05 0.00 0.00 2.57
3118 4152 1.541147 ACAATTGCCGTGGACATGAAG 59.459 47.619 5.05 0.00 0.00 3.02
3119 4153 1.135315 CAATTGCCGTGGACATGAAGG 60.135 52.381 0.00 0.00 0.00 3.46
3126 4160 4.645809 GGACATGAAGGCCCAGAC 57.354 61.111 0.00 0.00 40.85 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.286872 CGGTAGTACGTGGAGTCAGAT 58.713 52.381 0.00 0.00 0.00 2.90
1 2 1.002430 ACGGTAGTACGTGGAGTCAGA 59.998 52.381 0.00 0.00 46.64 3.27
2 3 1.446907 ACGGTAGTACGTGGAGTCAG 58.553 55.000 0.00 0.00 46.64 3.51
3 4 3.631453 ACGGTAGTACGTGGAGTCA 57.369 52.632 0.00 0.00 46.64 3.41
11 12 2.406401 CGCCAGGACGGTAGTACG 59.594 66.667 0.00 0.00 35.97 3.67
12 13 2.103736 GCGCCAGGACGGTAGTAC 59.896 66.667 0.00 0.00 36.97 2.73
13 14 3.511595 CGCGCCAGGACGGTAGTA 61.512 66.667 0.00 0.00 36.97 1.82
15 16 4.554363 CTCGCGCCAGGACGGTAG 62.554 72.222 0.00 0.00 36.97 3.18
52 53 2.645014 CACTAGCGCTCGTCGTCG 60.645 66.667 16.34 0.00 41.07 5.12
53 54 2.277373 CCACTAGCGCTCGTCGTC 60.277 66.667 16.34 0.00 41.07 4.20
54 55 3.812019 CCCACTAGCGCTCGTCGT 61.812 66.667 16.34 4.21 41.07 4.34
55 56 4.554363 CCCCACTAGCGCTCGTCG 62.554 72.222 16.34 6.42 42.12 5.12
56 57 2.615262 CTTCCCCACTAGCGCTCGTC 62.615 65.000 16.34 0.00 0.00 4.20
57 58 2.678934 TTCCCCACTAGCGCTCGT 60.679 61.111 16.34 12.22 0.00 4.18
67 68 2.439880 CCTCTTAATCCTCCTTCCCCAC 59.560 54.545 0.00 0.00 0.00 4.61
82 83 3.561313 GGCACATTGAAGGGTTCCTCTTA 60.561 47.826 0.00 0.00 30.89 2.10
107 109 3.998672 GCTTGGACGACACGGGGA 61.999 66.667 0.00 0.00 0.00 4.81
113 115 0.599204 GTTTCCTCGCTTGGACGACA 60.599 55.000 0.00 0.00 37.09 4.35
140 142 3.977579 GCAAGAAAGTAGCAAGCAGTTTC 59.022 43.478 12.64 12.64 36.15 2.78
144 146 2.238245 CGCAAGAAAGTAGCAAGCAG 57.762 50.000 0.00 0.00 43.02 4.24
155 157 5.448712 CGATCAACGTTCGTCGCAAGAAA 62.449 47.826 16.00 0.00 42.64 2.52
156 158 4.026355 CGATCAACGTTCGTCGCAAGAA 62.026 50.000 16.00 0.00 42.64 2.52
157 159 2.566345 CGATCAACGTTCGTCGCAAGA 61.566 52.381 16.00 1.64 44.19 3.02
158 160 0.246374 CGATCAACGTTCGTCGCAAG 60.246 55.000 16.00 0.00 44.19 4.01
159 161 0.660891 TCGATCAACGTTCGTCGCAA 60.661 50.000 20.91 7.68 44.19 4.85
160 162 0.455464 ATCGATCAACGTTCGTCGCA 60.455 50.000 20.91 13.25 44.19 5.10
161 163 0.638746 AATCGATCAACGTTCGTCGC 59.361 50.000 20.91 1.27 44.19 5.19
162 164 1.007422 CCAATCGATCAACGTTCGTCG 60.007 52.381 20.09 20.09 46.00 5.12
163 165 1.323534 CCCAATCGATCAACGTTCGTC 59.676 52.381 0.00 0.00 43.13 4.20
174 176 4.581824 CAGAAAACCATGATCCCAATCGAT 59.418 41.667 0.00 0.00 34.39 3.59
180 182 6.015519 CACTAAAACAGAAAACCATGATCCCA 60.016 38.462 0.00 0.00 0.00 4.37
241 243 9.906660 GTAGAAAGGAATATCTGATGTCTACTG 57.093 37.037 0.00 0.00 34.65 2.74
246 248 6.750148 ACGGTAGAAAGGAATATCTGATGTC 58.250 40.000 0.00 0.00 0.00 3.06
250 252 8.707796 AGATTACGGTAGAAAGGAATATCTGA 57.292 34.615 0.00 0.00 0.00 3.27
251 253 9.765795 AAAGATTACGGTAGAAAGGAATATCTG 57.234 33.333 0.00 0.00 0.00 2.90
252 254 9.984190 GAAAGATTACGGTAGAAAGGAATATCT 57.016 33.333 0.00 0.00 0.00 1.98
253 255 9.760077 TGAAAGATTACGGTAGAAAGGAATATC 57.240 33.333 0.00 0.00 0.00 1.63
296 298 9.901172 AACATCTTATATTTAGGAACGAAGGTT 57.099 29.630 0.00 0.00 39.63 3.50
419 422 9.974980 AACCGAAATGAACATACACTTAAATTT 57.025 25.926 0.00 0.00 0.00 1.82
420 423 9.405587 CAACCGAAATGAACATACACTTAAATT 57.594 29.630 0.00 0.00 0.00 1.82
421 424 8.573035 ACAACCGAAATGAACATACACTTAAAT 58.427 29.630 0.00 0.00 0.00 1.40
424 427 7.356540 CAACAACCGAAATGAACATACACTTA 58.643 34.615 0.00 0.00 0.00 2.24
425 428 6.205784 CAACAACCGAAATGAACATACACTT 58.794 36.000 0.00 0.00 0.00 3.16
426 429 5.757886 CAACAACCGAAATGAACATACACT 58.242 37.500 0.00 0.00 0.00 3.55
427 430 4.381566 GCAACAACCGAAATGAACATACAC 59.618 41.667 0.00 0.00 0.00 2.90
428 431 4.277174 AGCAACAACCGAAATGAACATACA 59.723 37.500 0.00 0.00 0.00 2.29
429 432 4.794169 AGCAACAACCGAAATGAACATAC 58.206 39.130 0.00 0.00 0.00 2.39
430 433 4.517075 TGAGCAACAACCGAAATGAACATA 59.483 37.500 0.00 0.00 0.00 2.29
432 435 2.685388 TGAGCAACAACCGAAATGAACA 59.315 40.909 0.00 0.00 0.00 3.18
433 436 3.347958 TGAGCAACAACCGAAATGAAC 57.652 42.857 0.00 0.00 0.00 3.18
463 485 4.371624 ACTTGATCCAAACATGGTCTCA 57.628 40.909 0.00 0.00 0.00 3.27
466 488 7.121168 TCTCATTTACTTGATCCAAACATGGTC 59.879 37.037 0.00 0.00 0.00 4.02
474 497 4.941263 CGGGTTCTCATTTACTTGATCCAA 59.059 41.667 0.00 0.00 0.00 3.53
496 520 4.141574 TGAGGTCTATATTTTTGGGGTCCG 60.142 45.833 0.00 0.00 0.00 4.79
511 535 7.895759 AGCTTTTATTGCAAATTTGAGGTCTA 58.104 30.769 22.31 1.52 0.00 2.59
514 538 6.591448 GCTAGCTTTTATTGCAAATTTGAGGT 59.409 34.615 22.31 14.83 0.00 3.85
539 1440 1.320344 ATCATGCTGGGCAGTTGCTG 61.320 55.000 3.88 0.00 43.65 4.41
541 1442 0.459585 CAATCATGCTGGGCAGTTGC 60.460 55.000 0.00 0.00 43.65 4.17
590 1521 2.159382 GATGCGTTCTTTCCCCTCAAA 58.841 47.619 0.00 0.00 0.00 2.69
591 1522 1.613255 GGATGCGTTCTTTCCCCTCAA 60.613 52.381 0.00 0.00 0.00 3.02
592 1523 0.035439 GGATGCGTTCTTTCCCCTCA 60.035 55.000 0.00 0.00 0.00 3.86
593 1524 0.035439 TGGATGCGTTCTTTCCCCTC 60.035 55.000 0.00 0.00 0.00 4.30
594 1525 0.625849 ATGGATGCGTTCTTTCCCCT 59.374 50.000 0.00 0.00 0.00 4.79
596 1527 2.491693 TGAAATGGATGCGTTCTTTCCC 59.508 45.455 0.00 0.00 0.00 3.97
597 1528 3.762779 CTGAAATGGATGCGTTCTTTCC 58.237 45.455 0.00 0.00 0.00 3.13
598 1529 3.174375 GCTGAAATGGATGCGTTCTTTC 58.826 45.455 0.00 3.48 0.00 2.62
599 1530 2.557924 TGCTGAAATGGATGCGTTCTTT 59.442 40.909 0.00 0.00 0.00 2.52
605 1536 1.402613 TGACATGCTGAAATGGATGCG 59.597 47.619 0.00 0.00 39.00 4.73
676 1607 0.960364 TCCTCTTTTCATGGGCGTGC 60.960 55.000 0.00 0.00 0.00 5.34
701 1632 3.117888 TCTGGTGTTTGCTTCCTTTCTCT 60.118 43.478 0.00 0.00 0.00 3.10
719 1650 0.918983 TGGAAGTAATGGCCCTCTGG 59.081 55.000 0.00 0.00 0.00 3.86
720 1651 2.806945 TTGGAAGTAATGGCCCTCTG 57.193 50.000 0.00 0.00 0.00 3.35
725 1656 7.117667 CACTGTTTAATTTTGGAAGTAATGGCC 59.882 37.037 0.00 0.00 0.00 5.36
727 1658 7.872483 AGCACTGTTTAATTTTGGAAGTAATGG 59.128 33.333 0.00 0.00 0.00 3.16
749 1714 7.062255 GCACAAAACCAATCTATCTAAAAGCAC 59.938 37.037 0.00 0.00 0.00 4.40
759 1724 3.440173 CAGACCGCACAAAACCAATCTAT 59.560 43.478 0.00 0.00 0.00 1.98
761 1726 1.608590 CAGACCGCACAAAACCAATCT 59.391 47.619 0.00 0.00 0.00 2.40
764 1729 0.394488 TCCAGACCGCACAAAACCAA 60.394 50.000 0.00 0.00 0.00 3.67
770 1735 4.329545 GGGCTCCAGACCGCACAA 62.330 66.667 0.00 0.00 30.66 3.33
821 1786 4.662707 TTAAAAGGGCGCGGGGCA 62.663 61.111 26.94 3.46 46.16 5.36
894 1859 2.004583 CGACGTGAATGGGCTCTTTA 57.995 50.000 0.00 0.00 0.00 1.85
942 1907 1.255600 GCGCGGTCTTCTTCTTATTCG 59.744 52.381 8.83 0.00 0.00 3.34
992 1957 0.652592 GGTGAAAGACATGGCGATCG 59.347 55.000 11.69 11.69 0.00 3.69
993 1958 0.652592 CGGTGAAAGACATGGCGATC 59.347 55.000 0.00 0.00 0.00 3.69
1162 2128 5.351458 GTTGAGTTCAAGGTGAAAAGCATT 58.649 37.500 0.00 0.00 38.22 3.56
1164 2130 3.181501 CGTTGAGTTCAAGGTGAAAAGCA 60.182 43.478 6.44 0.00 38.22 3.91
1172 2138 1.981256 ATTGCCGTTGAGTTCAAGGT 58.019 45.000 12.06 0.00 39.36 3.50
1180 2146 2.095853 AGCGAAACATATTGCCGTTGAG 59.904 45.455 0.00 0.00 0.00 3.02
1181 2147 2.080693 AGCGAAACATATTGCCGTTGA 58.919 42.857 0.00 0.00 0.00 3.18
1223 2192 7.024171 CCATTTTGCACAAACGTATACACATA 58.976 34.615 3.32 0.00 0.00 2.29
1224 2193 5.861251 CCATTTTGCACAAACGTATACACAT 59.139 36.000 3.32 0.00 0.00 3.21
1225 2194 5.215903 CCATTTTGCACAAACGTATACACA 58.784 37.500 3.32 0.00 0.00 3.72
1226 2195 4.619336 CCCATTTTGCACAAACGTATACAC 59.381 41.667 3.32 0.00 0.00 2.90
1227 2196 4.519350 TCCCATTTTGCACAAACGTATACA 59.481 37.500 3.32 0.00 0.00 2.29
1236 2205 4.260170 GCCAATATTCCCATTTTGCACAA 58.740 39.130 0.00 0.00 0.00 3.33
1407 2376 3.577231 CAGTATGCTAGGACTGCGG 57.423 57.895 0.00 0.00 36.91 5.69
1447 2444 3.250040 CCACCTGAGTAACGGAACAAAAG 59.750 47.826 0.00 0.00 0.00 2.27
1486 2486 0.603569 CACTGGAACTGTACCTCGCT 59.396 55.000 0.00 0.00 38.84 4.93
1542 2542 0.391130 CACATGTGACGGGAATCGGT 60.391 55.000 21.64 0.00 44.45 4.69
1546 2546 2.559698 TTGACACATGTGACGGGAAT 57.440 45.000 31.94 7.77 0.00 3.01
1563 2563 8.373048 TCGCTATGTAAATAGTTTACCCATTG 57.627 34.615 9.38 2.04 43.73 2.82
1564 2564 8.967664 TTCGCTATGTAAATAGTTTACCCATT 57.032 30.769 9.38 0.00 43.73 3.16
1599 2600 1.905354 GGAGCCTTTGCCTGCAGTT 60.905 57.895 13.81 0.00 38.69 3.16
1600 2601 2.282745 GGAGCCTTTGCCTGCAGT 60.283 61.111 13.81 0.00 38.69 4.40
1705 2706 8.916654 CCACTATCGAAGTAACATTACATCATC 58.083 37.037 4.67 0.00 35.76 2.92
1709 2710 6.924060 GCTCCACTATCGAAGTAACATTACAT 59.076 38.462 4.67 0.00 35.76 2.29
1752 2764 5.651576 TCTTGCATGTATATTTGGCAACTCA 59.348 36.000 0.00 0.00 39.33 3.41
1779 2791 2.095668 TCGCGTGCCAAATTATTTTCGT 60.096 40.909 5.77 0.00 0.00 3.85
1809 2821 5.401079 CCGAAACGTAAAGATTTGCAATGTT 59.599 36.000 0.00 0.00 0.00 2.71
1865 2877 1.236628 AGCACTTGAAGCAGCTCTTG 58.763 50.000 6.88 0.00 34.56 3.02
1925 2937 2.427453 GCAGTAGAGGATTCCGTTGAGA 59.573 50.000 0.00 0.00 0.00 3.27
2026 3038 4.790962 CAGCCGCAGCCTCCACAT 62.791 66.667 0.00 0.00 41.25 3.21
2105 3120 2.496899 ATTCTTCATCTTGCGGTGGT 57.503 45.000 0.00 0.00 0.00 4.16
2108 3123 3.118629 TGCTCTATTCTTCATCTTGCGGT 60.119 43.478 0.00 0.00 0.00 5.68
2122 3137 6.319911 GGTTTGCTCCTAATCTTTGCTCTATT 59.680 38.462 0.00 0.00 0.00 1.73
2146 3164 4.464069 TTGGTTCTGTTGTTTCCTTTGG 57.536 40.909 0.00 0.00 0.00 3.28
2245 3274 0.178981 AAGCAAGCTTTGAGAGGCCA 60.179 50.000 5.01 0.00 31.29 5.36
2380 3409 7.505585 AGAAATGTCTTTGTCCCTTATGTTCAA 59.494 33.333 0.00 0.00 0.00 2.69
2410 3439 3.009723 TCATTTGAATCAACGAGGCCTC 58.990 45.455 23.79 23.79 0.00 4.70
2411 3440 3.071874 TCATTTGAATCAACGAGGCCT 57.928 42.857 3.86 3.86 0.00 5.19
2502 3531 4.843728 ACATCGTACATGAAAGGGATGTT 58.156 39.130 0.00 0.00 40.99 2.71
2514 3543 7.172532 ACACAAGTATGTCAAAACATCGTACAT 59.827 33.333 0.00 0.00 42.59 2.29
2555 3584 5.873179 AATACCGAAATGCAATATACGGG 57.127 39.130 19.27 6.55 39.45 5.28
2589 3618 3.344515 TCGTCCGGAGATACATATCAGG 58.655 50.000 3.06 0.00 35.17 3.86
2592 3621 4.217983 AGGTTTCGTCCGGAGATACATATC 59.782 45.833 3.06 0.00 0.00 1.63
2604 3633 5.163923 GGTATACAAAGAAAGGTTTCGTCCG 60.164 44.000 5.01 0.00 41.92 4.79
2615 3644 9.589461 TTGAACAAATAGGGGTATACAAAGAAA 57.411 29.630 5.01 0.00 0.00 2.52
2623 3652 7.147983 GCACAACATTGAACAAATAGGGGTATA 60.148 37.037 0.00 0.00 0.00 1.47
2631 3660 8.604640 AAATGATGCACAACATTGAACAAATA 57.395 26.923 13.65 0.00 39.84 1.40
2672 3701 8.862325 ACAAATCTTCTTGTTCCATGTATACA 57.138 30.769 8.27 8.27 36.05 2.29
2673 3702 9.559958 CAACAAATCTTCTTGTTCCATGTATAC 57.440 33.333 0.00 0.00 45.51 1.47
2686 3715 7.161404 GGGCTAAAAATCCAACAAATCTTCTT 58.839 34.615 0.00 0.00 0.00 2.52
2696 3725 5.921962 AGAGATTGGGCTAAAAATCCAAC 57.078 39.130 0.00 0.00 42.48 3.77
2705 3734 8.090788 ACTGTAGAAAATAGAGATTGGGCTAA 57.909 34.615 0.00 0.00 0.00 3.09
2716 3750 8.202137 CCCCGAGATTTAACTGTAGAAAATAGA 58.798 37.037 0.00 0.00 0.00 1.98
2719 3753 5.589050 GCCCCGAGATTTAACTGTAGAAAAT 59.411 40.000 0.00 0.00 0.00 1.82
2725 3759 2.101783 TCGCCCCGAGATTTAACTGTA 58.898 47.619 0.00 0.00 0.00 2.74
2751 3785 2.899303 ACAATCGACCCCCTCAAATT 57.101 45.000 0.00 0.00 0.00 1.82
2755 3789 1.553248 CTGTTACAATCGACCCCCTCA 59.447 52.381 0.00 0.00 0.00 3.86
2773 3807 7.864379 CCTAATAAATATGTTGCTCTTTGGCTG 59.136 37.037 0.00 0.00 0.00 4.85
2804 3838 3.881089 TGAGATGGTCATGATGCACAATC 59.119 43.478 0.00 0.00 35.67 2.67
2805 3839 3.893521 TGAGATGGTCATGATGCACAAT 58.106 40.909 0.00 0.00 0.00 2.71
2806 3840 3.353370 TGAGATGGTCATGATGCACAA 57.647 42.857 0.00 0.00 0.00 3.33
2807 3841 3.570912 ATGAGATGGTCATGATGCACA 57.429 42.857 0.00 0.00 44.82 4.57
2808 3842 4.083431 GCTTATGAGATGGTCATGATGCAC 60.083 45.833 0.00 0.00 46.09 4.57
2809 3843 4.070009 GCTTATGAGATGGTCATGATGCA 58.930 43.478 0.00 0.00 46.09 3.96
2810 3844 4.070009 TGCTTATGAGATGGTCATGATGC 58.930 43.478 0.00 0.00 46.09 3.91
2811 3845 5.938125 TGATGCTTATGAGATGGTCATGATG 59.062 40.000 0.00 0.00 46.09 3.07
2812 3846 6.123045 TGATGCTTATGAGATGGTCATGAT 57.877 37.500 0.00 0.00 46.09 2.45
2813 3847 5.556006 TGATGCTTATGAGATGGTCATGA 57.444 39.130 0.00 0.00 46.09 3.07
2814 3848 6.819397 AATGATGCTTATGAGATGGTCATG 57.181 37.500 0.00 0.00 46.09 3.07
2816 3850 6.829811 TGAAAATGATGCTTATGAGATGGTCA 59.170 34.615 0.00 0.00 40.38 4.02
2817 3851 7.268199 TGAAAATGATGCTTATGAGATGGTC 57.732 36.000 0.00 0.00 0.00 4.02
2818 3852 7.834881 ATGAAAATGATGCTTATGAGATGGT 57.165 32.000 0.00 0.00 0.00 3.55
2819 3853 8.357402 TGAATGAAAATGATGCTTATGAGATGG 58.643 33.333 0.00 0.00 0.00 3.51
2820 3854 9.914131 ATGAATGAAAATGATGCTTATGAGATG 57.086 29.630 0.00 0.00 0.00 2.90
2868 3902 5.783111 GCCTTCATGCCTTTTCTCTAAAAA 58.217 37.500 0.00 0.00 34.26 1.94
2869 3903 5.391312 GCCTTCATGCCTTTTCTCTAAAA 57.609 39.130 0.00 0.00 33.58 1.52
2882 3916 2.657297 TGAAGTTGGGCCTTCATGC 58.343 52.632 4.53 0.00 44.39 4.06
2885 3919 5.541868 TCATTAATTTGAAGTTGGGCCTTCA 59.458 36.000 4.53 3.50 46.81 3.02
2886 3920 6.036577 TCATTAATTTGAAGTTGGGCCTTC 57.963 37.500 4.53 0.31 41.01 3.46
2887 3921 6.432403 TTCATTAATTTGAAGTTGGGCCTT 57.568 33.333 4.53 0.00 32.07 4.35
2888 3922 6.041423 CTTCATTAATTTGAAGTTGGGCCT 57.959 37.500 4.53 0.00 44.90 5.19
2897 3931 6.098679 CGGTTGATGGCTTCATTAATTTGAA 58.901 36.000 3.72 0.00 33.34 2.69
2898 3932 5.394005 CCGGTTGATGGCTTCATTAATTTGA 60.394 40.000 3.72 0.00 33.34 2.69
2899 3933 4.805192 CCGGTTGATGGCTTCATTAATTTG 59.195 41.667 3.72 0.00 33.34 2.32
2900 3934 5.009854 CCGGTTGATGGCTTCATTAATTT 57.990 39.130 3.72 0.00 33.34 1.82
2901 3935 4.654091 CCGGTTGATGGCTTCATTAATT 57.346 40.909 3.72 0.00 33.34 1.40
2912 3946 1.691976 TGTATCCTAGCCGGTTGATGG 59.308 52.381 1.90 1.63 0.00 3.51
2913 3947 3.469008 TTGTATCCTAGCCGGTTGATG 57.531 47.619 1.90 0.00 0.00 3.07
2914 3948 3.244561 CCATTGTATCCTAGCCGGTTGAT 60.245 47.826 1.90 0.00 0.00 2.57
2915 3949 2.104111 CCATTGTATCCTAGCCGGTTGA 59.896 50.000 1.90 0.00 0.00 3.18
2916 3950 2.158813 ACCATTGTATCCTAGCCGGTTG 60.159 50.000 1.90 0.00 0.00 3.77
2917 3951 2.124411 ACCATTGTATCCTAGCCGGTT 58.876 47.619 1.90 0.00 0.00 4.44
2918 3952 1.416401 CACCATTGTATCCTAGCCGGT 59.584 52.381 1.90 0.00 0.00 5.28
2919 3953 1.878102 GCACCATTGTATCCTAGCCGG 60.878 57.143 0.00 0.00 0.00 6.13
2920 3954 1.070758 AGCACCATTGTATCCTAGCCG 59.929 52.381 0.00 0.00 0.00 5.52
2921 3955 2.104792 TCAGCACCATTGTATCCTAGCC 59.895 50.000 0.00 0.00 0.00 3.93
2922 3956 3.475566 TCAGCACCATTGTATCCTAGC 57.524 47.619 0.00 0.00 0.00 3.42
2923 3957 6.992123 TGTAATTCAGCACCATTGTATCCTAG 59.008 38.462 0.00 0.00 0.00 3.02
2924 3958 6.894682 TGTAATTCAGCACCATTGTATCCTA 58.105 36.000 0.00 0.00 0.00 2.94
2925 3959 5.754782 TGTAATTCAGCACCATTGTATCCT 58.245 37.500 0.00 0.00 0.00 3.24
2926 3960 6.449635 TTGTAATTCAGCACCATTGTATCC 57.550 37.500 0.00 0.00 0.00 2.59
2927 3961 6.974622 CCTTTGTAATTCAGCACCATTGTATC 59.025 38.462 0.00 0.00 0.00 2.24
2928 3962 6.627953 GCCTTTGTAATTCAGCACCATTGTAT 60.628 38.462 0.00 0.00 0.00 2.29
2929 3963 5.336372 GCCTTTGTAATTCAGCACCATTGTA 60.336 40.000 0.00 0.00 0.00 2.41
2930 3964 4.561326 GCCTTTGTAATTCAGCACCATTGT 60.561 41.667 0.00 0.00 0.00 2.71
2931 3965 3.928375 GCCTTTGTAATTCAGCACCATTG 59.072 43.478 0.00 0.00 0.00 2.82
2932 3966 3.577848 TGCCTTTGTAATTCAGCACCATT 59.422 39.130 0.00 0.00 0.00 3.16
2933 3967 3.164268 TGCCTTTGTAATTCAGCACCAT 58.836 40.909 0.00 0.00 0.00 3.55
2934 3968 2.591923 TGCCTTTGTAATTCAGCACCA 58.408 42.857 0.00 0.00 0.00 4.17
2935 3969 3.658757 TTGCCTTTGTAATTCAGCACC 57.341 42.857 0.00 0.00 0.00 5.01
2936 3970 4.681483 GTCTTTGCCTTTGTAATTCAGCAC 59.319 41.667 0.00 0.00 0.00 4.40
2937 3971 4.584325 AGTCTTTGCCTTTGTAATTCAGCA 59.416 37.500 0.00 0.00 0.00 4.41
2938 3972 5.126396 AGTCTTTGCCTTTGTAATTCAGC 57.874 39.130 0.00 0.00 0.00 4.26
2939 3973 6.638468 GTCAAGTCTTTGCCTTTGTAATTCAG 59.362 38.462 0.00 0.00 34.21 3.02
2940 3974 6.460953 GGTCAAGTCTTTGCCTTTGTAATTCA 60.461 38.462 0.00 0.00 34.21 2.57
2941 3975 5.920840 GGTCAAGTCTTTGCCTTTGTAATTC 59.079 40.000 0.00 0.00 34.21 2.17
2942 3976 5.362430 TGGTCAAGTCTTTGCCTTTGTAATT 59.638 36.000 4.40 0.00 33.98 1.40
2943 3977 4.892934 TGGTCAAGTCTTTGCCTTTGTAAT 59.107 37.500 4.40 0.00 33.98 1.89
2944 3978 4.274147 TGGTCAAGTCTTTGCCTTTGTAA 58.726 39.130 4.40 0.00 33.98 2.41
2945 3979 3.892284 TGGTCAAGTCTTTGCCTTTGTA 58.108 40.909 4.40 0.00 33.98 2.41
2946 3980 2.733956 TGGTCAAGTCTTTGCCTTTGT 58.266 42.857 4.40 0.00 33.98 2.83
2947 3981 3.799281 TTGGTCAAGTCTTTGCCTTTG 57.201 42.857 4.40 0.00 33.98 2.77
2948 3982 4.817318 TTTTGGTCAAGTCTTTGCCTTT 57.183 36.364 4.40 0.00 33.98 3.11
2949 3983 4.222810 AGTTTTTGGTCAAGTCTTTGCCTT 59.777 37.500 4.40 0.00 33.98 4.35
2950 3984 3.769300 AGTTTTTGGTCAAGTCTTTGCCT 59.231 39.130 4.40 0.00 33.98 4.75
2951 3985 3.865164 CAGTTTTTGGTCAAGTCTTTGCC 59.135 43.478 0.00 0.00 34.21 4.52
2952 3986 4.743493 TCAGTTTTTGGTCAAGTCTTTGC 58.257 39.130 0.00 0.00 34.21 3.68
2953 3987 7.650834 TTTTCAGTTTTTGGTCAAGTCTTTG 57.349 32.000 0.00 0.00 35.57 2.77
2954 3988 8.846943 ATTTTTCAGTTTTTGGTCAAGTCTTT 57.153 26.923 0.00 0.00 0.00 2.52
2955 3989 9.366216 GTATTTTTCAGTTTTTGGTCAAGTCTT 57.634 29.630 0.00 0.00 0.00 3.01
2956 3990 8.527810 TGTATTTTTCAGTTTTTGGTCAAGTCT 58.472 29.630 0.00 0.00 0.00 3.24
2957 3991 8.696410 TGTATTTTTCAGTTTTTGGTCAAGTC 57.304 30.769 0.00 0.00 0.00 3.01
2958 3992 9.097257 CATGTATTTTTCAGTTTTTGGTCAAGT 57.903 29.630 0.00 0.00 0.00 3.16
2959 3993 8.063630 GCATGTATTTTTCAGTTTTTGGTCAAG 58.936 33.333 0.00 0.00 0.00 3.02
2960 3994 7.011857 GGCATGTATTTTTCAGTTTTTGGTCAA 59.988 33.333 0.00 0.00 0.00 3.18
2961 3995 6.481644 GGCATGTATTTTTCAGTTTTTGGTCA 59.518 34.615 0.00 0.00 0.00 4.02
2962 3996 6.481644 TGGCATGTATTTTTCAGTTTTTGGTC 59.518 34.615 0.00 0.00 0.00 4.02
2963 3997 6.352516 TGGCATGTATTTTTCAGTTTTTGGT 58.647 32.000 0.00 0.00 0.00 3.67
2964 3998 6.857777 TGGCATGTATTTTTCAGTTTTTGG 57.142 33.333 0.00 0.00 0.00 3.28
2965 3999 9.733219 AATTTGGCATGTATTTTTCAGTTTTTG 57.267 25.926 0.00 0.00 0.00 2.44
2966 4000 9.949174 GAATTTGGCATGTATTTTTCAGTTTTT 57.051 25.926 0.00 0.00 0.00 1.94
2967 4001 9.118300 TGAATTTGGCATGTATTTTTCAGTTTT 57.882 25.926 0.00 0.00 0.00 2.43
2968 4002 8.558700 GTGAATTTGGCATGTATTTTTCAGTTT 58.441 29.630 0.00 0.00 0.00 2.66
2969 4003 7.933033 AGTGAATTTGGCATGTATTTTTCAGTT 59.067 29.630 0.00 0.00 0.00 3.16
2970 4004 7.444299 AGTGAATTTGGCATGTATTTTTCAGT 58.556 30.769 0.00 0.06 0.00 3.41
2971 4005 7.894376 AGTGAATTTGGCATGTATTTTTCAG 57.106 32.000 0.00 0.00 0.00 3.02
2972 4006 7.540400 CGTAGTGAATTTGGCATGTATTTTTCA 59.460 33.333 0.00 0.00 0.00 2.69
2973 4007 7.753132 TCGTAGTGAATTTGGCATGTATTTTTC 59.247 33.333 0.00 0.00 0.00 2.29
2974 4008 7.540745 GTCGTAGTGAATTTGGCATGTATTTTT 59.459 33.333 0.00 0.00 0.00 1.94
2975 4009 7.027161 GTCGTAGTGAATTTGGCATGTATTTT 58.973 34.615 0.00 0.00 0.00 1.82
2976 4010 6.404293 GGTCGTAGTGAATTTGGCATGTATTT 60.404 38.462 0.00 0.00 0.00 1.40
2977 4011 5.065988 GGTCGTAGTGAATTTGGCATGTATT 59.934 40.000 0.00 0.00 0.00 1.89
2978 4012 4.574828 GGTCGTAGTGAATTTGGCATGTAT 59.425 41.667 0.00 0.00 0.00 2.29
2979 4013 3.936453 GGTCGTAGTGAATTTGGCATGTA 59.064 43.478 0.00 0.00 0.00 2.29
2980 4014 2.747446 GGTCGTAGTGAATTTGGCATGT 59.253 45.455 0.00 0.00 0.00 3.21
2981 4015 2.097466 GGGTCGTAGTGAATTTGGCATG 59.903 50.000 0.00 0.00 0.00 4.06
2982 4016 2.365582 GGGTCGTAGTGAATTTGGCAT 58.634 47.619 0.00 0.00 0.00 4.40
2983 4017 1.816074 GGGTCGTAGTGAATTTGGCA 58.184 50.000 0.00 0.00 0.00 4.92
2984 4018 0.725117 CGGGTCGTAGTGAATTTGGC 59.275 55.000 0.00 0.00 0.00 4.52
2985 4019 1.066716 TCCGGGTCGTAGTGAATTTGG 60.067 52.381 0.00 0.00 0.00 3.28
2986 4020 2.268298 CTCCGGGTCGTAGTGAATTTG 58.732 52.381 0.00 0.00 0.00 2.32
2987 4021 1.405121 GCTCCGGGTCGTAGTGAATTT 60.405 52.381 0.00 0.00 0.00 1.82
2988 4022 0.175073 GCTCCGGGTCGTAGTGAATT 59.825 55.000 0.00 0.00 0.00 2.17
2989 4023 0.968901 TGCTCCGGGTCGTAGTGAAT 60.969 55.000 0.00 0.00 0.00 2.57
2990 4024 1.592400 CTGCTCCGGGTCGTAGTGAA 61.592 60.000 0.00 0.00 0.00 3.18
2991 4025 2.034532 TGCTCCGGGTCGTAGTGA 59.965 61.111 0.00 0.00 0.00 3.41
2992 4026 2.490217 CTGCTCCGGGTCGTAGTG 59.510 66.667 0.00 0.00 0.00 2.74
2993 4027 3.450115 GCTGCTCCGGGTCGTAGT 61.450 66.667 0.00 0.00 0.00 2.73
2994 4028 3.417275 CTGCTGCTCCGGGTCGTAG 62.417 68.421 0.00 0.52 0.00 3.51
2995 4029 3.449227 CTGCTGCTCCGGGTCGTA 61.449 66.667 0.00 0.00 0.00 3.43
3002 4036 3.485431 CTGTTCGCTGCTGCTCCG 61.485 66.667 14.03 3.63 36.97 4.63
3003 4037 2.047844 TCTGTTCGCTGCTGCTCC 60.048 61.111 14.03 1.91 36.97 4.70
3004 4038 2.738695 GCTCTGTTCGCTGCTGCTC 61.739 63.158 14.03 4.91 36.97 4.26
3005 4039 2.741598 GCTCTGTTCGCTGCTGCT 60.742 61.111 14.03 0.00 36.97 4.24
3006 4040 2.307137 GATGCTCTGTTCGCTGCTGC 62.307 60.000 5.34 5.34 0.00 5.25
3007 4041 1.017701 TGATGCTCTGTTCGCTGCTG 61.018 55.000 0.00 0.00 0.00 4.41
3008 4042 0.321034 TTGATGCTCTGTTCGCTGCT 60.321 50.000 0.00 0.00 0.00 4.24
3009 4043 0.096628 CTTGATGCTCTGTTCGCTGC 59.903 55.000 0.00 0.00 0.00 5.25
3010 4044 1.659601 CTCTTGATGCTCTGTTCGCTG 59.340 52.381 0.00 0.00 0.00 5.18
3011 4045 1.547820 TCTCTTGATGCTCTGTTCGCT 59.452 47.619 0.00 0.00 0.00 4.93
3012 4046 2.001812 TCTCTTGATGCTCTGTTCGC 57.998 50.000 0.00 0.00 0.00 4.70
3013 4047 3.993081 AGTTTCTCTTGATGCTCTGTTCG 59.007 43.478 0.00 0.00 0.00 3.95
3014 4048 4.378253 GCAGTTTCTCTTGATGCTCTGTTC 60.378 45.833 0.00 0.00 34.10 3.18
3015 4049 3.501445 GCAGTTTCTCTTGATGCTCTGTT 59.499 43.478 0.00 0.00 34.10 3.16
3016 4050 3.072944 GCAGTTTCTCTTGATGCTCTGT 58.927 45.455 0.00 0.00 34.10 3.41
3017 4051 2.093941 CGCAGTTTCTCTTGATGCTCTG 59.906 50.000 0.00 0.00 34.75 3.35
3018 4052 2.028658 TCGCAGTTTCTCTTGATGCTCT 60.029 45.455 0.00 0.00 34.75 4.09
3019 4053 2.341257 TCGCAGTTTCTCTTGATGCTC 58.659 47.619 0.00 0.00 34.75 4.26
3020 4054 2.462456 TCGCAGTTTCTCTTGATGCT 57.538 45.000 0.00 0.00 34.75 3.79
3021 4055 2.674852 TGATCGCAGTTTCTCTTGATGC 59.325 45.455 0.00 0.00 0.00 3.91
3022 4056 4.727162 GCTTGATCGCAGTTTCTCTTGATG 60.727 45.833 0.00 0.00 0.00 3.07
3023 4057 3.373439 GCTTGATCGCAGTTTCTCTTGAT 59.627 43.478 0.00 0.00 0.00 2.57
3024 4058 2.738846 GCTTGATCGCAGTTTCTCTTGA 59.261 45.455 0.00 0.00 0.00 3.02
3025 4059 2.159599 GGCTTGATCGCAGTTTCTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
3026 4060 2.079925 GGCTTGATCGCAGTTTCTCTT 58.920 47.619 0.00 0.00 0.00 2.85
3027 4061 1.731720 GGCTTGATCGCAGTTTCTCT 58.268 50.000 0.00 0.00 0.00 3.10
3028 4062 0.371645 CGGCTTGATCGCAGTTTCTC 59.628 55.000 0.00 0.00 0.00 2.87
3029 4063 2.460330 CGGCTTGATCGCAGTTTCT 58.540 52.632 0.00 0.00 0.00 2.52
3037 4071 3.506059 ATCTCCGGCGGCTTGATCG 62.506 63.158 23.83 3.12 0.00 3.69
3038 4072 1.666234 GATCTCCGGCGGCTTGATC 60.666 63.158 27.01 27.01 0.00 2.92
3039 4073 1.690219 AAGATCTCCGGCGGCTTGAT 61.690 55.000 23.83 22.68 0.00 2.57
3040 4074 2.359169 AAGATCTCCGGCGGCTTGA 61.359 57.895 23.83 18.95 0.00 3.02
3041 4075 2.176273 CAAGATCTCCGGCGGCTTG 61.176 63.158 23.83 23.40 0.00 4.01
3042 4076 2.187946 CAAGATCTCCGGCGGCTT 59.812 61.111 23.83 16.00 0.00 4.35
3043 4077 2.759973 TCAAGATCTCCGGCGGCT 60.760 61.111 23.83 9.87 0.00 5.52
3044 4078 2.279784 CTCAAGATCTCCGGCGGC 60.280 66.667 23.83 7.19 0.00 6.53
3045 4079 2.279784 GCTCAAGATCTCCGGCGG 60.280 66.667 22.51 22.51 0.00 6.13
3046 4080 1.880340 GTGCTCAAGATCTCCGGCG 60.880 63.158 0.00 0.00 0.00 6.46
3047 4081 1.086634 GTGTGCTCAAGATCTCCGGC 61.087 60.000 0.00 1.15 0.00 6.13
3048 4082 0.247460 TGTGTGCTCAAGATCTCCGG 59.753 55.000 0.00 0.00 0.00 5.14
3049 4083 1.203287 TCTGTGTGCTCAAGATCTCCG 59.797 52.381 0.00 0.00 0.00 4.63
3050 4084 2.999355 GTTCTGTGTGCTCAAGATCTCC 59.001 50.000 0.00 0.00 0.00 3.71
3051 4085 3.657634 TGTTCTGTGTGCTCAAGATCTC 58.342 45.455 0.00 0.00 0.00 2.75
3052 4086 3.661944 CTGTTCTGTGTGCTCAAGATCT 58.338 45.455 0.00 0.00 0.00 2.75
3053 4087 2.159234 GCTGTTCTGTGTGCTCAAGATC 59.841 50.000 0.00 0.00 0.00 2.75
3054 4088 2.149578 GCTGTTCTGTGTGCTCAAGAT 58.850 47.619 0.00 0.00 0.00 2.40
3055 4089 1.134431 TGCTGTTCTGTGTGCTCAAGA 60.134 47.619 0.00 0.00 0.00 3.02
3056 4090 1.263484 CTGCTGTTCTGTGTGCTCAAG 59.737 52.381 0.00 0.00 0.00 3.02
3057 4091 1.302366 CTGCTGTTCTGTGTGCTCAA 58.698 50.000 0.00 0.00 0.00 3.02
3058 4092 0.533531 CCTGCTGTTCTGTGTGCTCA 60.534 55.000 0.00 0.00 0.00 4.26
3059 4093 1.233285 CCCTGCTGTTCTGTGTGCTC 61.233 60.000 0.00 0.00 0.00 4.26
3060 4094 1.228063 CCCTGCTGTTCTGTGTGCT 60.228 57.895 0.00 0.00 0.00 4.40
3061 4095 2.912624 GCCCTGCTGTTCTGTGTGC 61.913 63.158 0.00 0.00 0.00 4.57
3062 4096 2.263741 GGCCCTGCTGTTCTGTGTG 61.264 63.158 0.00 0.00 0.00 3.82
3063 4097 2.113986 GGCCCTGCTGTTCTGTGT 59.886 61.111 0.00 0.00 0.00 3.72
3064 4098 3.052082 CGGCCCTGCTGTTCTGTG 61.052 66.667 0.00 0.00 0.00 3.66
3065 4099 2.738213 CTTCGGCCCTGCTGTTCTGT 62.738 60.000 0.00 0.00 36.18 3.41
3066 4100 2.032528 TTCGGCCCTGCTGTTCTG 59.967 61.111 0.00 0.00 36.18 3.02
3067 4101 2.348998 CTTCGGCCCTGCTGTTCT 59.651 61.111 0.00 0.00 36.18 3.01
3068 4102 3.435186 GCTTCGGCCCTGCTGTTC 61.435 66.667 0.00 0.00 36.18 3.18
3079 4113 4.749310 AGCGCAGAGTGGCTTCGG 62.749 66.667 11.47 0.00 35.61 4.30
3080 4114 3.485431 CAGCGCAGAGTGGCTTCG 61.485 66.667 11.47 0.00 37.41 3.79
3081 4115 2.047844 TCAGCGCAGAGTGGCTTC 60.048 61.111 11.47 0.00 37.41 3.86
3082 4116 2.358003 GTCAGCGCAGAGTGGCTT 60.358 61.111 11.47 0.00 37.41 4.35
3083 4117 2.460662 ATTGTCAGCGCAGAGTGGCT 62.461 55.000 11.47 0.00 40.90 4.75
3084 4118 1.580845 AATTGTCAGCGCAGAGTGGC 61.581 55.000 11.47 0.00 0.00 5.01
3085 4119 0.167470 CAATTGTCAGCGCAGAGTGG 59.833 55.000 11.47 0.00 0.00 4.00
3086 4120 0.453950 GCAATTGTCAGCGCAGAGTG 60.454 55.000 11.47 0.00 0.00 3.51
3087 4121 1.580845 GGCAATTGTCAGCGCAGAGT 61.581 55.000 11.47 0.00 0.00 3.24
3088 4122 1.136147 GGCAATTGTCAGCGCAGAG 59.864 57.895 11.47 0.00 0.00 3.35
3089 4123 2.679934 CGGCAATTGTCAGCGCAGA 61.680 57.895 11.47 3.41 0.00 4.26
3090 4124 2.202388 CGGCAATTGTCAGCGCAG 60.202 61.111 11.47 0.00 0.00 5.18
3091 4125 2.977456 ACGGCAATTGTCAGCGCA 60.977 55.556 11.47 0.00 0.00 6.09
3092 4126 2.502510 CACGGCAATTGTCAGCGC 60.503 61.111 11.22 0.00 0.00 5.92
3093 4127 2.176546 CCACGGCAATTGTCAGCG 59.823 61.111 11.22 4.34 0.00 5.18
3094 4128 1.210155 GTCCACGGCAATTGTCAGC 59.790 57.895 11.22 0.00 0.00 4.26
3095 4129 1.135603 CATGTCCACGGCAATTGTCAG 60.136 52.381 11.22 5.64 0.00 3.51
3096 4130 0.880441 CATGTCCACGGCAATTGTCA 59.120 50.000 11.22 0.00 0.00 3.58
3097 4131 1.164411 TCATGTCCACGGCAATTGTC 58.836 50.000 7.40 3.05 0.00 3.18
3098 4132 1.541147 CTTCATGTCCACGGCAATTGT 59.459 47.619 7.40 0.00 0.00 2.71
3099 4133 1.135315 CCTTCATGTCCACGGCAATTG 60.135 52.381 0.00 0.00 0.00 2.32
3100 4134 1.176527 CCTTCATGTCCACGGCAATT 58.823 50.000 0.00 0.00 0.00 2.32
3101 4135 1.315257 GCCTTCATGTCCACGGCAAT 61.315 55.000 0.00 0.00 40.41 3.56
3102 4136 1.971167 GCCTTCATGTCCACGGCAA 60.971 57.895 0.00 0.00 40.41 4.52
3103 4137 2.359850 GCCTTCATGTCCACGGCA 60.360 61.111 0.00 0.00 40.41 5.69
3104 4138 3.134127 GGCCTTCATGTCCACGGC 61.134 66.667 0.00 0.00 39.98 5.68
3105 4139 2.438434 GGGCCTTCATGTCCACGG 60.438 66.667 0.84 0.00 0.00 4.94
3106 4140 1.746615 CTGGGCCTTCATGTCCACG 60.747 63.158 4.53 0.00 0.00 4.94
3107 4141 0.678048 GTCTGGGCCTTCATGTCCAC 60.678 60.000 4.53 0.00 0.00 4.02
3108 4142 1.685224 GTCTGGGCCTTCATGTCCA 59.315 57.895 4.53 0.00 0.00 4.02
3109 4143 4.645809 GTCTGGGCCTTCATGTCC 57.354 61.111 4.53 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.