Multiple sequence alignment - TraesCS6A01G236400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G236400 chr6A 100.000 3855 0 0 1 3855 445761589 445765443 0.000000e+00 7119
1 TraesCS6A01G236400 chr6A 85.130 269 17 3 3215 3461 305762801 305762534 1.780000e-63 254
2 TraesCS6A01G236400 chr6D 94.168 1989 93 7 906 2871 309037712 309039700 0.000000e+00 3009
3 TraesCS6A01G236400 chr6D 87.004 454 32 9 458 888 309037198 309037647 1.610000e-133 486
4 TraesCS6A01G236400 chr3A 97.695 998 13 3 2867 3855 114702154 114701158 0.000000e+00 1707
5 TraesCS6A01G236400 chr2B 97.794 952 10 3 2912 3854 347069460 347068511 0.000000e+00 1631
6 TraesCS6A01G236400 chr2B 93.034 445 31 0 1 445 221081681 221082125 0.000000e+00 651
7 TraesCS6A01G236400 chr2B 92.650 449 31 2 1 448 421668383 421667936 0.000000e+00 645
8 TraesCS6A01G236400 chr2B 86.523 371 25 9 2868 3214 765076322 765075953 6.040000e-103 385
9 TraesCS6A01G236400 chr6B 88.502 1322 89 18 458 1732 476696340 476697645 0.000000e+00 1541
10 TraesCS6A01G236400 chr6B 94.766 535 28 0 1919 2453 476707752 476708286 0.000000e+00 833
11 TraesCS6A01G236400 chr6B 94.635 466 18 6 2413 2871 476708317 476708782 0.000000e+00 715
12 TraesCS6A01G236400 chr6B 90.461 304 15 7 2868 3159 632290224 632290525 4.670000e-104 388
13 TraesCS6A01G236400 chr6B 86.989 269 13 2 3215 3461 181165048 181164780 2.270000e-72 283
14 TraesCS6A01G236400 chr6B 86.090 266 15 2 3218 3461 22926561 22926296 2.280000e-67 267
15 TraesCS6A01G236400 chr6B 84.793 217 6 1 1730 1919 476705593 476705809 3.930000e-45 193
16 TraesCS6A01G236400 chr6B 91.919 99 8 0 3116 3214 632290518 632290616 5.190000e-29 139
17 TraesCS6A01G236400 chr2D 94.514 638 11 4 3218 3831 392369213 392368576 0.000000e+00 963
18 TraesCS6A01G236400 chr2D 92.584 445 31 2 1 444 624020539 624020096 4.200000e-179 638
19 TraesCS6A01G236400 chr2D 86.327 373 25 10 2866 3214 142235535 142235165 2.170000e-102 383
20 TraesCS6A01G236400 chr2D 98.052 154 3 0 3678 3831 106680427 106680274 6.350000e-68 268
21 TraesCS6A01G236400 chr7B 92.980 641 21 4 3215 3831 119727573 119726933 0.000000e+00 913
22 TraesCS6A01G236400 chr7B 92.377 446 33 1 1 445 432486516 432486961 5.430000e-178 634
23 TraesCS6A01G236400 chr3D 93.722 446 25 3 1 445 58000448 58000891 0.000000e+00 665
24 TraesCS6A01G236400 chr3D 92.634 448 31 2 1 448 22341559 22341114 0.000000e+00 643
25 TraesCS6A01G236400 chr4B 93.096 449 29 2 1 448 57453307 57452860 0.000000e+00 656
26 TraesCS6A01G236400 chr4B 92.667 450 32 1 1 450 544721062 544721510 0.000000e+00 647
27 TraesCS6A01G236400 chr1D 92.377 446 32 2 1 445 329819514 329819958 5.430000e-178 634
28 TraesCS6A01G236400 chr1D 87.003 377 23 10 2863 3214 460556479 460556854 6.000000e-108 401
29 TraesCS6A01G236400 chr1D 77.364 645 79 34 2861 3461 256817864 256818485 1.730000e-83 320
30 TraesCS6A01G236400 chr5B 91.419 303 14 5 2867 3159 69812681 69812381 4.640000e-109 405
31 TraesCS6A01G236400 chr5B 93.939 99 6 0 3116 3214 69812388 69812290 2.400000e-32 150
32 TraesCS6A01G236400 chr4D 87.297 370 20 11 2869 3214 215006276 215006642 7.760000e-107 398
33 TraesCS6A01G236400 chr5D 86.828 372 24 9 2867 3214 13286596 13286226 3.610000e-105 392
34 TraesCS6A01G236400 chr7D 86.523 371 25 9 2868 3214 292342183 292341814 6.040000e-103 385
35 TraesCS6A01G236400 chr7D 86.253 371 26 9 2868 3214 83453938 83453569 2.810000e-101 379
36 TraesCS6A01G236400 chrUn 86.523 371 23 11 2868 3214 19155873 19155506 2.170000e-102 383
37 TraesCS6A01G236400 chr7A 85.502 269 17 2 3215 3461 671441844 671441576 1.060000e-65 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G236400 chr6A 445761589 445765443 3854 False 7119.000000 7119 100.000 1 3855 1 chr6A.!!$F1 3854
1 TraesCS6A01G236400 chr6D 309037198 309039700 2502 False 1747.500000 3009 90.586 458 2871 2 chr6D.!!$F1 2413
2 TraesCS6A01G236400 chr3A 114701158 114702154 996 True 1707.000000 1707 97.695 2867 3855 1 chr3A.!!$R1 988
3 TraesCS6A01G236400 chr2B 347068511 347069460 949 True 1631.000000 1631 97.794 2912 3854 1 chr2B.!!$R1 942
4 TraesCS6A01G236400 chr6B 476696340 476697645 1305 False 1541.000000 1541 88.502 458 1732 1 chr6B.!!$F1 1274
5 TraesCS6A01G236400 chr6B 476705593 476708782 3189 False 580.333333 833 91.398 1730 2871 3 chr6B.!!$F2 1141
6 TraesCS6A01G236400 chr2D 392368576 392369213 637 True 963.000000 963 94.514 3218 3831 1 chr2D.!!$R3 613
7 TraesCS6A01G236400 chr7B 119726933 119727573 640 True 913.000000 913 92.980 3215 3831 1 chr7B.!!$R1 616
8 TraesCS6A01G236400 chr1D 256817864 256818485 621 False 320.000000 320 77.364 2861 3461 1 chr1D.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.032130 TATGAGCATCGAGGTTCCGC 59.968 55.0 11.42 0.0 38.61 5.54 F
284 285 0.035036 AGACGTCACGAGGAGTCTCA 59.965 55.0 19.50 0.0 39.49 3.27 F
286 287 0.035036 ACGTCACGAGGAGTCTCAGA 59.965 55.0 2.91 0.0 39.95 3.27 F
827 851 0.110486 GGAAAGCCCACAAGGTCTCA 59.890 55.0 0.00 0.0 38.26 3.27 F
1788 1878 0.250513 GGTGGCGATGGAAGAAGAGT 59.749 55.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1848 0.036010 ATCGCCACCTTGTCCTCTTG 60.036 55.000 0.00 0.00 0.00 3.02 R
1769 1859 0.250513 ACTCTTCTTCCATCGCCACC 59.749 55.000 0.00 0.00 0.00 4.61 R
2021 4081 0.250727 GTAGGTTCACCAGCAGCCAA 60.251 55.000 0.00 0.00 38.89 4.52 R
2720 4852 1.442857 AACGTCGAGCAGCTCTTCG 60.443 57.895 24.53 24.53 33.42 3.79 R
3086 5256 0.112606 AGGGAGAACAGGACTCGTCA 59.887 55.000 0.00 0.00 35.49 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.865477 CGGGCAAGTAACATACCCA 57.135 52.632 0.00 0.00 40.87 4.51
19 20 2.341846 CGGGCAAGTAACATACCCAT 57.658 50.000 0.00 0.00 40.87 4.00
20 21 1.946768 CGGGCAAGTAACATACCCATG 59.053 52.381 0.00 0.00 40.87 3.66
21 22 2.420827 CGGGCAAGTAACATACCCATGA 60.421 50.000 0.00 0.00 40.87 3.07
22 23 2.949644 GGGCAAGTAACATACCCATGAC 59.050 50.000 0.00 0.00 40.52 3.06
23 24 3.616219 GGCAAGTAACATACCCATGACA 58.384 45.455 0.00 0.00 35.96 3.58
24 25 4.013728 GGCAAGTAACATACCCATGACAA 58.986 43.478 0.00 0.00 35.96 3.18
25 26 4.461081 GGCAAGTAACATACCCATGACAAA 59.539 41.667 0.00 0.00 35.96 2.83
26 27 5.393027 GGCAAGTAACATACCCATGACAAAG 60.393 44.000 0.00 0.00 35.96 2.77
27 28 5.393027 GCAAGTAACATACCCATGACAAAGG 60.393 44.000 0.00 0.00 35.96 3.11
28 29 5.772393 AGTAACATACCCATGACAAAGGA 57.228 39.130 0.00 0.00 35.96 3.36
29 30 6.134535 AGTAACATACCCATGACAAAGGAA 57.865 37.500 0.00 0.00 35.96 3.36
30 31 6.548321 AGTAACATACCCATGACAAAGGAAA 58.452 36.000 0.00 0.00 35.96 3.13
31 32 7.182060 AGTAACATACCCATGACAAAGGAAAT 58.818 34.615 0.00 0.00 35.96 2.17
32 33 8.333235 AGTAACATACCCATGACAAAGGAAATA 58.667 33.333 0.00 0.00 35.96 1.40
33 34 8.962679 GTAACATACCCATGACAAAGGAAATAA 58.037 33.333 0.00 0.00 35.96 1.40
34 35 7.404671 ACATACCCATGACAAAGGAAATAAC 57.595 36.000 0.00 0.00 35.96 1.89
35 36 6.094881 ACATACCCATGACAAAGGAAATAACG 59.905 38.462 0.00 0.00 35.96 3.18
36 37 4.403734 ACCCATGACAAAGGAAATAACGT 58.596 39.130 0.00 0.00 0.00 3.99
37 38 5.562635 ACCCATGACAAAGGAAATAACGTA 58.437 37.500 0.00 0.00 0.00 3.57
38 39 6.184789 ACCCATGACAAAGGAAATAACGTAT 58.815 36.000 0.00 0.00 0.00 3.06
39 40 6.094881 ACCCATGACAAAGGAAATAACGTATG 59.905 38.462 0.00 0.00 0.00 2.39
40 41 6.094881 CCCATGACAAAGGAAATAACGTATGT 59.905 38.462 0.00 0.00 0.00 2.29
41 42 7.362574 CCCATGACAAAGGAAATAACGTATGTT 60.363 37.037 5.50 5.50 42.19 2.71
42 43 7.484641 CCATGACAAAGGAAATAACGTATGTTG 59.515 37.037 10.68 0.00 39.12 3.33
43 44 7.499321 TGACAAAGGAAATAACGTATGTTGT 57.501 32.000 10.68 0.43 39.12 3.32
44 45 7.577979 TGACAAAGGAAATAACGTATGTTGTC 58.422 34.615 10.68 7.11 41.56 3.18
45 46 7.226918 TGACAAAGGAAATAACGTATGTTGTCA 59.773 33.333 10.68 9.47 45.90 3.58
46 47 8.106247 ACAAAGGAAATAACGTATGTTGTCAT 57.894 30.769 10.68 0.66 39.12 3.06
47 48 9.221933 ACAAAGGAAATAACGTATGTTGTCATA 57.778 29.630 10.68 0.00 39.12 2.15
50 51 7.902032 AGGAAATAACGTATGTTGTCATAACG 58.098 34.615 10.68 0.00 39.12 3.18
51 52 7.010738 AGGAAATAACGTATGTTGTCATAACGG 59.989 37.037 10.68 0.00 39.12 4.44
52 53 7.201548 GGAAATAACGTATGTTGTCATAACGGT 60.202 37.037 10.68 0.00 39.12 4.83
53 54 7.599630 AATAACGTATGTTGTCATAACGGTT 57.400 32.000 10.68 0.00 39.12 4.44
54 55 5.520022 AACGTATGTTGTCATAACGGTTC 57.480 39.130 0.00 0.00 38.13 3.62
55 56 3.609373 ACGTATGTTGTCATAACGGTTCG 59.391 43.478 0.00 0.00 38.13 3.95
56 57 3.853103 CGTATGTTGTCATAACGGTTCGA 59.147 43.478 0.00 0.00 38.13 3.71
57 58 4.259135 CGTATGTTGTCATAACGGTTCGAC 60.259 45.833 13.56 13.56 38.13 4.20
58 59 2.406130 TGTTGTCATAACGGTTCGACC 58.594 47.619 16.31 6.73 34.05 4.79
60 61 7.331847 TATGTTGTCATAACGGTTCGACCGA 62.332 44.000 26.02 0.00 46.70 4.69
61 62 8.551332 TATGTTGTCATAACGGTTCGACCGAT 62.551 42.308 26.02 19.12 46.70 4.18
72 73 3.729716 GGTTCGACCGATAAAGATCTTCG 59.270 47.826 8.78 8.38 36.94 3.79
73 74 4.349501 GTTCGACCGATAAAGATCTTCGT 58.650 43.478 8.78 0.00 36.94 3.85
74 75 5.504665 GGTTCGACCGATAAAGATCTTCGTA 60.505 44.000 8.78 0.00 36.94 3.43
75 76 5.340010 TCGACCGATAAAGATCTTCGTAG 57.660 43.478 8.78 1.18 36.94 3.51
76 77 5.052481 TCGACCGATAAAGATCTTCGTAGA 58.948 41.667 8.78 4.78 36.94 2.59
77 78 5.525012 TCGACCGATAAAGATCTTCGTAGAA 59.475 40.000 8.78 0.00 45.90 2.10
78 79 6.204301 TCGACCGATAAAGATCTTCGTAGAAT 59.796 38.462 8.78 0.00 45.90 2.40
79 80 7.386025 TCGACCGATAAAGATCTTCGTAGAATA 59.614 37.037 8.78 0.00 45.90 1.75
80 81 8.176365 CGACCGATAAAGATCTTCGTAGAATAT 58.824 37.037 8.78 0.81 45.90 1.28
81 82 9.279904 GACCGATAAAGATCTTCGTAGAATATG 57.720 37.037 8.78 0.00 45.90 1.78
82 83 8.794553 ACCGATAAAGATCTTCGTAGAATATGT 58.205 33.333 8.78 0.00 45.90 2.29
89 90 8.271312 AGATCTTCGTAGAATATGTAGTAGCC 57.729 38.462 0.00 0.00 45.90 3.93
90 91 7.883833 AGATCTTCGTAGAATATGTAGTAGCCA 59.116 37.037 0.00 0.00 45.90 4.75
91 92 7.812690 TCTTCGTAGAATATGTAGTAGCCAA 57.187 36.000 0.00 0.00 45.90 4.52
92 93 8.405418 TCTTCGTAGAATATGTAGTAGCCAAT 57.595 34.615 0.00 0.00 45.90 3.16
93 94 9.511272 TCTTCGTAGAATATGTAGTAGCCAATA 57.489 33.333 0.00 0.00 45.90 1.90
96 97 9.457436 TCGTAGAATATGTAGTAGCCAATATGA 57.543 33.333 0.00 0.00 0.00 2.15
97 98 9.723447 CGTAGAATATGTAGTAGCCAATATGAG 57.277 37.037 0.00 0.00 0.00 2.90
98 99 9.522804 GTAGAATATGTAGTAGCCAATATGAGC 57.477 37.037 0.00 0.00 0.00 4.26
99 100 8.138928 AGAATATGTAGTAGCCAATATGAGCA 57.861 34.615 0.54 0.00 0.00 4.26
100 101 8.766476 AGAATATGTAGTAGCCAATATGAGCAT 58.234 33.333 0.54 0.00 0.00 3.79
101 102 8.954950 AATATGTAGTAGCCAATATGAGCATC 57.045 34.615 0.54 0.00 0.00 3.91
102 103 4.809673 TGTAGTAGCCAATATGAGCATCG 58.190 43.478 0.54 0.00 38.61 3.84
103 104 4.522789 TGTAGTAGCCAATATGAGCATCGA 59.477 41.667 0.00 0.00 38.61 3.59
104 105 4.185467 AGTAGCCAATATGAGCATCGAG 57.815 45.455 0.00 0.00 38.61 4.04
105 106 2.469274 AGCCAATATGAGCATCGAGG 57.531 50.000 0.00 0.00 38.61 4.63
106 107 1.696336 AGCCAATATGAGCATCGAGGT 59.304 47.619 0.00 0.00 38.61 3.85
107 108 2.105477 AGCCAATATGAGCATCGAGGTT 59.895 45.455 0.00 0.00 38.61 3.50
108 109 2.481952 GCCAATATGAGCATCGAGGTTC 59.518 50.000 7.00 7.00 38.61 3.62
109 110 3.070018 CCAATATGAGCATCGAGGTTCC 58.930 50.000 11.42 0.00 38.61 3.62
110 111 2.732412 ATATGAGCATCGAGGTTCCG 57.268 50.000 11.42 0.00 38.61 4.30
111 112 0.032130 TATGAGCATCGAGGTTCCGC 59.968 55.000 11.42 0.00 38.61 5.54
112 113 1.680522 ATGAGCATCGAGGTTCCGCT 61.681 55.000 11.42 1.99 38.61 5.52
113 114 1.035385 TGAGCATCGAGGTTCCGCTA 61.035 55.000 11.42 0.00 38.61 4.26
114 115 0.315568 GAGCATCGAGGTTCCGCTAT 59.684 55.000 2.18 0.00 31.86 2.97
115 116 0.753262 AGCATCGAGGTTCCGCTATT 59.247 50.000 0.00 0.00 0.00 1.73
116 117 0.861837 GCATCGAGGTTCCGCTATTG 59.138 55.000 0.00 0.00 0.00 1.90
117 118 1.502231 CATCGAGGTTCCGCTATTGG 58.498 55.000 0.00 0.00 0.00 3.16
118 119 1.120530 ATCGAGGTTCCGCTATTGGT 58.879 50.000 0.00 0.00 0.00 3.67
119 120 0.899720 TCGAGGTTCCGCTATTGGTT 59.100 50.000 0.00 0.00 0.00 3.67
120 121 2.101783 TCGAGGTTCCGCTATTGGTTA 58.898 47.619 0.00 0.00 0.00 2.85
121 122 2.696707 TCGAGGTTCCGCTATTGGTTAT 59.303 45.455 0.00 0.00 0.00 1.89
122 123 3.133362 TCGAGGTTCCGCTATTGGTTATT 59.867 43.478 0.00 0.00 0.00 1.40
123 124 3.247648 CGAGGTTCCGCTATTGGTTATTG 59.752 47.826 0.00 0.00 0.00 1.90
124 125 4.448210 GAGGTTCCGCTATTGGTTATTGA 58.552 43.478 0.00 0.00 0.00 2.57
125 126 4.196971 AGGTTCCGCTATTGGTTATTGAC 58.803 43.478 0.00 0.00 0.00 3.18
147 148 1.178276 GAGAGGTGTCTCGGTCATGT 58.822 55.000 0.00 0.00 44.47 3.21
148 149 1.133407 GAGAGGTGTCTCGGTCATGTC 59.867 57.143 0.00 0.00 44.47 3.06
149 150 1.178276 GAGGTGTCTCGGTCATGTCT 58.822 55.000 0.00 0.00 0.00 3.41
150 151 2.026169 AGAGGTGTCTCGGTCATGTCTA 60.026 50.000 0.00 0.00 44.47 2.59
151 152 2.093106 AGGTGTCTCGGTCATGTCTAC 58.907 52.381 0.00 0.00 0.00 2.59
152 153 1.816835 GGTGTCTCGGTCATGTCTACA 59.183 52.381 0.00 0.00 0.00 2.74
153 154 2.427453 GGTGTCTCGGTCATGTCTACAT 59.573 50.000 0.00 0.00 36.96 2.29
154 155 3.630769 GGTGTCTCGGTCATGTCTACATA 59.369 47.826 0.00 0.00 34.26 2.29
155 156 4.261238 GGTGTCTCGGTCATGTCTACATAG 60.261 50.000 0.00 0.00 34.26 2.23
156 157 4.335874 GTGTCTCGGTCATGTCTACATAGT 59.664 45.833 0.00 0.00 34.26 2.12
157 158 4.948004 TGTCTCGGTCATGTCTACATAGTT 59.052 41.667 0.00 0.00 34.26 2.24
158 159 5.066117 TGTCTCGGTCATGTCTACATAGTTC 59.934 44.000 0.00 0.00 34.26 3.01
159 160 5.297278 GTCTCGGTCATGTCTACATAGTTCT 59.703 44.000 0.00 0.00 34.26 3.01
160 161 5.527951 TCTCGGTCATGTCTACATAGTTCTC 59.472 44.000 0.00 0.00 34.26 2.87
161 162 4.272748 TCGGTCATGTCTACATAGTTCTCG 59.727 45.833 0.00 0.00 34.26 4.04
162 163 4.272748 CGGTCATGTCTACATAGTTCTCGA 59.727 45.833 0.00 0.00 34.26 4.04
163 164 5.220796 CGGTCATGTCTACATAGTTCTCGAA 60.221 44.000 0.00 0.00 34.26 3.71
164 165 5.972382 GGTCATGTCTACATAGTTCTCGAAC 59.028 44.000 1.62 1.62 36.67 3.95
165 166 5.972382 GTCATGTCTACATAGTTCTCGAACC 59.028 44.000 6.20 0.00 36.90 3.62
166 167 4.978083 TGTCTACATAGTTCTCGAACCC 57.022 45.455 6.20 0.00 42.06 4.11
167 168 3.376234 TGTCTACATAGTTCTCGAACCCG 59.624 47.826 6.20 0.00 42.06 5.28
168 169 3.376546 GTCTACATAGTTCTCGAACCCGT 59.623 47.826 6.20 4.41 42.06 5.28
169 170 4.572389 GTCTACATAGTTCTCGAACCCGTA 59.428 45.833 6.20 5.21 42.06 4.02
170 171 4.813161 TCTACATAGTTCTCGAACCCGTAG 59.187 45.833 16.66 16.66 42.06 3.51
183 184 4.430765 CGTAGGGTCCGCACGCTT 62.431 66.667 0.00 0.00 43.11 4.68
184 185 2.887360 GTAGGGTCCGCACGCTTA 59.113 61.111 0.00 0.00 43.11 3.09
185 186 1.216178 GTAGGGTCCGCACGCTTAA 59.784 57.895 0.00 0.00 43.11 1.85
186 187 1.080435 GTAGGGTCCGCACGCTTAAC 61.080 60.000 0.00 0.00 43.11 2.01
187 188 1.534336 TAGGGTCCGCACGCTTAACA 61.534 55.000 0.00 0.00 43.11 2.41
188 189 1.743995 GGGTCCGCACGCTTAACAT 60.744 57.895 0.00 0.00 32.63 2.71
189 190 1.303091 GGGTCCGCACGCTTAACATT 61.303 55.000 0.00 0.00 32.63 2.71
190 191 1.361793 GGTCCGCACGCTTAACATTA 58.638 50.000 0.00 0.00 0.00 1.90
191 192 1.326548 GGTCCGCACGCTTAACATTAG 59.673 52.381 0.00 0.00 0.00 1.73
192 193 2.264813 GTCCGCACGCTTAACATTAGA 58.735 47.619 0.00 0.00 0.00 2.10
193 194 2.864343 GTCCGCACGCTTAACATTAGAT 59.136 45.455 0.00 0.00 0.00 1.98
194 195 2.863740 TCCGCACGCTTAACATTAGATG 59.136 45.455 0.00 0.00 0.00 2.90
195 196 2.863740 CCGCACGCTTAACATTAGATGA 59.136 45.455 0.00 0.00 0.00 2.92
196 197 3.302480 CCGCACGCTTAACATTAGATGAC 60.302 47.826 0.00 0.00 0.00 3.06
197 198 3.599339 CGCACGCTTAACATTAGATGACG 60.599 47.826 0.00 0.00 0.00 4.35
198 199 3.841372 GCACGCTTAACATTAGATGACGC 60.841 47.826 0.00 0.00 0.00 5.19
199 200 3.551890 CACGCTTAACATTAGATGACGCT 59.448 43.478 0.00 0.00 0.00 5.07
200 201 4.738252 CACGCTTAACATTAGATGACGCTA 59.262 41.667 0.00 0.00 0.00 4.26
201 202 4.976731 ACGCTTAACATTAGATGACGCTAG 59.023 41.667 0.00 0.00 0.00 3.42
202 203 5.212934 CGCTTAACATTAGATGACGCTAGA 58.787 41.667 0.00 0.00 0.00 2.43
203 204 5.859114 CGCTTAACATTAGATGACGCTAGAT 59.141 40.000 0.00 0.00 0.00 1.98
204 205 6.363626 CGCTTAACATTAGATGACGCTAGATT 59.636 38.462 0.00 0.00 0.00 2.40
205 206 7.537649 CGCTTAACATTAGATGACGCTAGATTA 59.462 37.037 0.00 0.00 0.00 1.75
206 207 8.855279 GCTTAACATTAGATGACGCTAGATTAG 58.145 37.037 0.00 0.00 0.00 1.73
207 208 9.900710 CTTAACATTAGATGACGCTAGATTAGT 57.099 33.333 0.00 0.00 0.00 2.24
211 212 9.847706 ACATTAGATGACGCTAGATTAGTATTG 57.152 33.333 0.00 0.00 0.00 1.90
212 213 9.295214 CATTAGATGACGCTAGATTAGTATTGG 57.705 37.037 0.00 0.00 0.00 3.16
213 214 6.274157 AGATGACGCTAGATTAGTATTGGG 57.726 41.667 0.00 0.00 0.00 4.12
214 215 6.010850 AGATGACGCTAGATTAGTATTGGGA 58.989 40.000 0.00 0.00 0.00 4.37
215 216 6.665680 AGATGACGCTAGATTAGTATTGGGAT 59.334 38.462 0.00 0.00 0.00 3.85
216 217 7.834681 AGATGACGCTAGATTAGTATTGGGATA 59.165 37.037 0.00 0.00 0.00 2.59
217 218 7.956328 TGACGCTAGATTAGTATTGGGATAT 57.044 36.000 0.00 0.00 0.00 1.63
218 219 8.362464 TGACGCTAGATTAGTATTGGGATATT 57.638 34.615 0.00 0.00 0.00 1.28
219 220 8.812972 TGACGCTAGATTAGTATTGGGATATTT 58.187 33.333 0.00 0.00 0.00 1.40
220 221 9.088512 GACGCTAGATTAGTATTGGGATATTTG 57.911 37.037 0.00 0.00 0.00 2.32
221 222 8.812972 ACGCTAGATTAGTATTGGGATATTTGA 58.187 33.333 0.00 0.00 0.00 2.69
222 223 9.823647 CGCTAGATTAGTATTGGGATATTTGAT 57.176 33.333 0.00 0.00 0.00 2.57
228 229 9.745018 ATTAGTATTGGGATATTTGATGAGTGG 57.255 33.333 0.00 0.00 0.00 4.00
229 230 7.154191 AGTATTGGGATATTTGATGAGTGGT 57.846 36.000 0.00 0.00 0.00 4.16
230 231 8.275187 AGTATTGGGATATTTGATGAGTGGTA 57.725 34.615 0.00 0.00 0.00 3.25
231 232 8.723365 AGTATTGGGATATTTGATGAGTGGTAA 58.277 33.333 0.00 0.00 0.00 2.85
232 233 7.823745 ATTGGGATATTTGATGAGTGGTAAC 57.176 36.000 0.00 0.00 0.00 2.50
233 234 5.364778 TGGGATATTTGATGAGTGGTAACG 58.635 41.667 0.00 0.00 42.51 3.18
234 235 5.129650 TGGGATATTTGATGAGTGGTAACGA 59.870 40.000 0.00 0.00 42.51 3.85
235 236 6.053005 GGGATATTTGATGAGTGGTAACGAA 58.947 40.000 0.00 0.00 42.51 3.85
236 237 6.540914 GGGATATTTGATGAGTGGTAACGAAA 59.459 38.462 0.00 0.00 42.51 3.46
237 238 7.228706 GGGATATTTGATGAGTGGTAACGAAAT 59.771 37.037 0.00 0.00 42.51 2.17
238 239 8.070171 GGATATTTGATGAGTGGTAACGAAATG 58.930 37.037 0.00 0.00 42.51 2.32
239 240 6.817765 ATTTGATGAGTGGTAACGAAATGT 57.182 33.333 0.00 0.00 42.51 2.71
240 241 6.627395 TTTGATGAGTGGTAACGAAATGTT 57.373 33.333 0.00 0.00 44.78 2.71
241 242 5.605564 TGATGAGTGGTAACGAAATGTTG 57.394 39.130 0.00 0.00 42.01 3.33
242 243 5.060506 TGATGAGTGGTAACGAAATGTTGT 58.939 37.500 0.00 0.00 42.01 3.32
243 244 5.529430 TGATGAGTGGTAACGAAATGTTGTT 59.471 36.000 0.00 0.00 42.01 2.83
244 245 5.412526 TGAGTGGTAACGAAATGTTGTTC 57.587 39.130 0.00 0.00 42.01 3.18
251 252 2.875080 CGAAATGTTGTTCGGAGTCC 57.125 50.000 0.00 0.00 45.21 3.85
252 253 1.463444 CGAAATGTTGTTCGGAGTCCC 59.537 52.381 2.80 0.00 45.21 4.46
263 264 2.356992 GGAGTCCCGGATGAGATCC 58.643 63.158 0.73 0.00 46.22 3.36
272 273 1.403814 GGATGAGATCCCAGACGTCA 58.596 55.000 19.50 0.00 43.88 4.35
273 274 1.067821 GGATGAGATCCCAGACGTCAC 59.932 57.143 19.50 1.87 43.88 3.67
274 275 0.741326 ATGAGATCCCAGACGTCACG 59.259 55.000 19.50 8.22 0.00 4.35
275 276 0.322187 TGAGATCCCAGACGTCACGA 60.322 55.000 19.50 9.93 0.00 4.35
276 277 0.378962 GAGATCCCAGACGTCACGAG 59.621 60.000 19.50 4.36 0.00 4.18
277 278 1.032657 AGATCCCAGACGTCACGAGG 61.033 60.000 19.50 13.21 0.00 4.63
278 279 1.001269 ATCCCAGACGTCACGAGGA 60.001 57.895 19.50 17.02 0.00 3.71
279 280 1.032657 ATCCCAGACGTCACGAGGAG 61.033 60.000 19.50 8.08 0.00 3.69
280 281 1.972223 CCCAGACGTCACGAGGAGT 60.972 63.158 19.50 0.00 0.00 3.85
281 282 1.502640 CCAGACGTCACGAGGAGTC 59.497 63.158 19.50 0.00 0.00 3.36
282 283 0.956410 CCAGACGTCACGAGGAGTCT 60.956 60.000 19.50 0.00 43.87 3.24
283 284 0.444651 CAGACGTCACGAGGAGTCTC 59.555 60.000 19.50 0.00 41.46 3.36
284 285 0.035036 AGACGTCACGAGGAGTCTCA 59.965 55.000 19.50 0.00 39.49 3.27
285 286 0.444651 GACGTCACGAGGAGTCTCAG 59.555 60.000 11.55 0.00 39.95 3.35
286 287 0.035036 ACGTCACGAGGAGTCTCAGA 59.965 55.000 2.91 0.00 39.95 3.27
287 288 1.157585 CGTCACGAGGAGTCTCAGAA 58.842 55.000 1.47 0.00 39.95 3.02
288 289 1.740585 CGTCACGAGGAGTCTCAGAAT 59.259 52.381 1.47 0.00 39.95 2.40
289 290 2.477021 CGTCACGAGGAGTCTCAGAATG 60.477 54.545 1.47 0.00 39.95 2.67
290 291 2.095461 TCACGAGGAGTCTCAGAATGG 58.905 52.381 1.47 0.00 39.95 3.16
291 292 1.821753 CACGAGGAGTCTCAGAATGGT 59.178 52.381 1.47 0.00 39.95 3.55
292 293 2.096248 ACGAGGAGTCTCAGAATGGTC 58.904 52.381 1.47 0.00 39.95 4.02
293 294 1.064803 CGAGGAGTCTCAGAATGGTCG 59.935 57.143 1.47 0.00 39.95 4.79
294 295 2.370349 GAGGAGTCTCAGAATGGTCGA 58.630 52.381 1.47 0.00 39.74 4.20
295 296 2.357637 GAGGAGTCTCAGAATGGTCGAG 59.642 54.545 1.47 0.00 39.74 4.04
296 297 2.025793 AGGAGTCTCAGAATGGTCGAGA 60.026 50.000 1.47 0.00 36.16 4.04
297 298 2.357637 GGAGTCTCAGAATGGTCGAGAG 59.642 54.545 1.47 0.00 35.52 3.20
298 299 2.357637 GAGTCTCAGAATGGTCGAGAGG 59.642 54.545 0.00 0.00 35.52 3.69
299 300 2.096248 GTCTCAGAATGGTCGAGAGGT 58.904 52.381 0.00 0.00 35.52 3.85
300 301 3.054287 AGTCTCAGAATGGTCGAGAGGTA 60.054 47.826 0.00 0.00 35.52 3.08
301 302 3.695060 GTCTCAGAATGGTCGAGAGGTAA 59.305 47.826 0.00 0.00 35.52 2.85
302 303 4.158025 GTCTCAGAATGGTCGAGAGGTAAA 59.842 45.833 0.00 0.00 35.52 2.01
303 304 4.399618 TCTCAGAATGGTCGAGAGGTAAAG 59.600 45.833 0.00 0.00 36.16 1.85
304 305 4.341487 TCAGAATGGTCGAGAGGTAAAGA 58.659 43.478 0.00 0.00 36.16 2.52
305 306 4.956700 TCAGAATGGTCGAGAGGTAAAGAT 59.043 41.667 0.00 0.00 36.16 2.40
306 307 5.422331 TCAGAATGGTCGAGAGGTAAAGATT 59.578 40.000 0.00 0.00 36.16 2.40
307 308 6.070767 TCAGAATGGTCGAGAGGTAAAGATTT 60.071 38.462 0.00 0.00 36.16 2.17
308 309 7.123697 TCAGAATGGTCGAGAGGTAAAGATTTA 59.876 37.037 0.00 0.00 36.16 1.40
309 310 7.928706 CAGAATGGTCGAGAGGTAAAGATTTAT 59.071 37.037 0.00 0.00 0.00 1.40
310 311 9.144298 AGAATGGTCGAGAGGTAAAGATTTATA 57.856 33.333 0.00 0.00 0.00 0.98
311 312 9.930693 GAATGGTCGAGAGGTAAAGATTTATAT 57.069 33.333 0.00 0.00 0.00 0.86
315 316 9.804758 GGTCGAGAGGTAAAGATTTATATATGG 57.195 37.037 0.00 0.00 0.00 2.74
316 317 9.804758 GTCGAGAGGTAAAGATTTATATATGGG 57.195 37.037 0.00 0.00 0.00 4.00
317 318 9.763837 TCGAGAGGTAAAGATTTATATATGGGA 57.236 33.333 0.00 0.00 0.00 4.37
336 337 6.995511 TGGGAAGTCATATTTTAGGTTTCG 57.004 37.500 0.00 0.00 0.00 3.46
337 338 5.883673 TGGGAAGTCATATTTTAGGTTTCGG 59.116 40.000 0.00 0.00 0.00 4.30
338 339 6.117488 GGGAAGTCATATTTTAGGTTTCGGA 58.883 40.000 0.00 0.00 0.00 4.55
339 340 6.600427 GGGAAGTCATATTTTAGGTTTCGGAA 59.400 38.462 0.00 0.00 0.00 4.30
340 341 7.121611 GGGAAGTCATATTTTAGGTTTCGGAAA 59.878 37.037 0.00 0.00 0.00 3.13
341 342 8.517056 GGAAGTCATATTTTAGGTTTCGGAAAA 58.483 33.333 4.46 0.00 0.00 2.29
342 343 9.902196 GAAGTCATATTTTAGGTTTCGGAAAAA 57.098 29.630 4.46 0.00 0.00 1.94
343 344 9.908152 AAGTCATATTTTAGGTTTCGGAAAAAG 57.092 29.630 4.46 0.00 0.00 2.27
344 345 8.520351 AGTCATATTTTAGGTTTCGGAAAAAGG 58.480 33.333 4.46 0.00 0.00 3.11
345 346 8.301720 GTCATATTTTAGGTTTCGGAAAAAGGT 58.698 33.333 4.46 0.00 0.00 3.50
346 347 8.301002 TCATATTTTAGGTTTCGGAAAAAGGTG 58.699 33.333 4.46 0.28 0.00 4.00
347 348 3.994204 TTAGGTTTCGGAAAAAGGTGC 57.006 42.857 4.46 0.00 0.00 5.01
348 349 1.770294 AGGTTTCGGAAAAAGGTGCA 58.230 45.000 4.46 0.00 0.00 4.57
349 350 1.681264 AGGTTTCGGAAAAAGGTGCAG 59.319 47.619 4.46 0.00 0.00 4.41
350 351 1.407618 GGTTTCGGAAAAAGGTGCAGT 59.592 47.619 4.46 0.00 0.00 4.40
351 352 2.159156 GGTTTCGGAAAAAGGTGCAGTT 60.159 45.455 4.46 0.00 0.00 3.16
352 353 3.517602 GTTTCGGAAAAAGGTGCAGTTT 58.482 40.909 4.46 0.00 0.00 2.66
353 354 3.878160 TTCGGAAAAAGGTGCAGTTTT 57.122 38.095 0.00 0.00 0.00 2.43
354 355 3.878160 TCGGAAAAAGGTGCAGTTTTT 57.122 38.095 15.91 15.91 39.30 1.94
374 375 2.973694 TCAGTATTGTACCGGGAAGC 57.026 50.000 6.32 0.00 0.00 3.86
375 376 2.463752 TCAGTATTGTACCGGGAAGCT 58.536 47.619 6.32 0.00 0.00 3.74
376 377 2.835764 TCAGTATTGTACCGGGAAGCTT 59.164 45.455 6.32 0.00 0.00 3.74
377 378 3.118884 TCAGTATTGTACCGGGAAGCTTC 60.119 47.826 18.54 18.54 0.00 3.86
378 379 2.169978 AGTATTGTACCGGGAAGCTTCC 59.830 50.000 33.67 33.67 46.82 3.46
392 393 2.868899 AGCTTCCAGAAGGTTCCAAAG 58.131 47.619 6.29 0.00 45.80 2.77
393 394 1.889170 GCTTCCAGAAGGTTCCAAAGG 59.111 52.381 9.36 0.00 38.80 3.11
394 395 2.489073 GCTTCCAGAAGGTTCCAAAGGA 60.489 50.000 9.36 0.00 38.80 3.36
395 396 3.815757 GCTTCCAGAAGGTTCCAAAGGAT 60.816 47.826 9.36 0.00 38.80 3.24
396 397 4.411013 CTTCCAGAAGGTTCCAAAGGATT 58.589 43.478 0.00 0.00 34.87 3.01
397 398 4.034285 TCCAGAAGGTTCCAAAGGATTC 57.966 45.455 0.00 0.00 35.89 2.52
398 399 3.092301 CCAGAAGGTTCCAAAGGATTCC 58.908 50.000 0.00 0.00 0.00 3.01
399 400 2.749621 CAGAAGGTTCCAAAGGATTCCG 59.250 50.000 0.00 0.00 33.55 4.30
400 401 2.092323 GAAGGTTCCAAAGGATTCCGG 58.908 52.381 0.00 0.00 33.55 5.14
401 402 1.368374 AGGTTCCAAAGGATTCCGGA 58.632 50.000 0.00 0.00 33.55 5.14
402 403 1.282157 AGGTTCCAAAGGATTCCGGAG 59.718 52.381 3.34 0.00 32.03 4.63
416 417 3.082055 GGAGGGGTCCGGAAGTCC 61.082 72.222 5.23 8.60 0.00 3.85
417 418 2.284405 GAGGGGTCCGGAAGTCCA 60.284 66.667 5.23 0.00 35.14 4.02
418 419 2.606826 AGGGGTCCGGAAGTCCAC 60.607 66.667 5.23 4.25 35.14 4.02
419 420 2.926242 GGGGTCCGGAAGTCCACA 60.926 66.667 5.23 0.00 35.14 4.17
420 421 2.522367 GGGGTCCGGAAGTCCACAA 61.522 63.158 5.23 0.00 35.14 3.33
421 422 1.003718 GGGTCCGGAAGTCCACAAG 60.004 63.158 5.23 0.00 35.14 3.16
422 423 1.752833 GGTCCGGAAGTCCACAAGT 59.247 57.895 5.23 0.00 35.14 3.16
423 424 0.602905 GGTCCGGAAGTCCACAAGTG 60.603 60.000 5.23 0.00 35.14 3.16
439 440 4.010070 TGGGTTCACCATGACCCA 57.990 55.556 17.03 17.03 46.80 4.51
440 441 2.245484 TGGGTTCACCATGACCCAA 58.755 52.632 18.32 4.89 46.80 4.12
441 442 0.112218 TGGGTTCACCATGACCCAAG 59.888 55.000 18.32 0.00 46.80 3.61
442 443 0.611896 GGGTTCACCATGACCCAAGG 60.612 60.000 14.09 0.00 37.53 3.61
443 444 0.611896 GGTTCACCATGACCCAAGGG 60.612 60.000 2.91 2.91 37.35 3.95
444 445 1.076549 TTCACCATGACCCAAGGGC 59.923 57.895 4.70 0.00 39.32 5.19
445 446 2.751436 CACCATGACCCAAGGGCG 60.751 66.667 4.70 0.00 39.32 6.13
446 447 2.933287 ACCATGACCCAAGGGCGA 60.933 61.111 4.70 0.00 39.32 5.54
447 448 2.124570 CCATGACCCAAGGGCGAG 60.125 66.667 4.70 0.00 39.32 5.03
448 449 2.669133 CCATGACCCAAGGGCGAGA 61.669 63.158 4.70 0.00 39.32 4.04
449 450 1.299648 CATGACCCAAGGGCGAGAA 59.700 57.895 4.70 0.00 39.32 2.87
450 451 0.322456 CATGACCCAAGGGCGAGAAA 60.322 55.000 4.70 0.00 39.32 2.52
451 452 0.404040 ATGACCCAAGGGCGAGAAAA 59.596 50.000 4.70 0.00 39.32 2.29
452 453 0.183971 TGACCCAAGGGCGAGAAAAA 59.816 50.000 4.70 0.00 39.32 1.94
453 454 0.596577 GACCCAAGGGCGAGAAAAAC 59.403 55.000 4.70 0.00 39.32 2.43
454 455 1.170290 ACCCAAGGGCGAGAAAAACG 61.170 55.000 4.70 0.00 39.32 3.60
455 456 1.579429 CCAAGGGCGAGAAAAACGG 59.421 57.895 0.00 0.00 0.00 4.44
495 497 7.741785 TCTTCAAACTCTTATGACCAACCTTA 58.258 34.615 0.00 0.00 0.00 2.69
496 498 8.215050 TCTTCAAACTCTTATGACCAACCTTAA 58.785 33.333 0.00 0.00 0.00 1.85
501 503 5.940470 ACTCTTATGACCAACCTTAAAGCAG 59.060 40.000 0.00 0.00 0.00 4.24
508 510 5.222048 TGACCAACCTTAAAGCAGTAGGAAT 60.222 40.000 0.00 0.00 33.21 3.01
510 512 4.142381 CCAACCTTAAAGCAGTAGGAATGC 60.142 45.833 0.00 0.00 44.18 3.56
827 851 0.110486 GGAAAGCCCACAAGGTCTCA 59.890 55.000 0.00 0.00 38.26 3.27
829 853 0.535102 AAAGCCCACAAGGTCTCACG 60.535 55.000 0.00 0.00 38.26 4.35
830 854 3.050275 GCCCACAAGGTCTCACGC 61.050 66.667 0.00 0.00 38.26 5.34
859 883 5.032327 ACTAACCCGGAATATTTCACTCC 57.968 43.478 0.73 0.00 0.00 3.85
865 889 5.185056 ACCCGGAATATTTCACTCCAAAAAG 59.815 40.000 0.73 0.00 0.00 2.27
892 946 6.371278 ACTAACTCCGAATATTACTGGGAGA 58.629 40.000 21.76 7.77 45.66 3.71
944 1015 3.884091 GTCTTCTTCTCATACTCGGCCTA 59.116 47.826 0.00 0.00 0.00 3.93
946 1017 3.579534 TCTTCTCATACTCGGCCTAGT 57.420 47.619 15.17 15.17 0.00 2.57
955 1026 0.589223 CTCGGCCTAGTCAGATCGAC 59.411 60.000 0.00 8.94 45.77 4.20
1039 1119 3.958018 GCCCTAGCTAGCTAGTCATCTA 58.042 50.000 37.50 13.98 43.22 1.98
1065 1145 4.830765 CCGGGCCGCTCGATCAAA 62.831 66.667 23.20 0.00 0.00 2.69
1166 1246 2.357517 CGAGCGTCACCTTGCCTT 60.358 61.111 0.00 0.00 0.00 4.35
1216 1296 2.436115 GCTACTTCACCACCGGCC 60.436 66.667 0.00 0.00 0.00 6.13
1217 1297 2.955881 GCTACTTCACCACCGGCCT 61.956 63.158 0.00 0.00 0.00 5.19
1410 1497 2.765807 CGGCCATCTCCCTGGTCT 60.766 66.667 2.24 0.00 38.83 3.85
1640 1727 5.065988 GGCGCCGATGGAATATACATTTATT 59.934 40.000 12.58 0.00 0.00 1.40
1758 1848 1.300481 GGCCGAAGAAGATAACAGGC 58.700 55.000 0.00 0.00 42.10 4.85
1769 1859 4.213564 AGATAACAGGCAAGAGGACAAG 57.786 45.455 0.00 0.00 0.00 3.16
1771 1861 0.846693 AACAGGCAAGAGGACAAGGT 59.153 50.000 0.00 0.00 0.00 3.50
1788 1878 0.250513 GGTGGCGATGGAAGAAGAGT 59.749 55.000 0.00 0.00 0.00 3.24
1793 1883 2.452105 GCGATGGAAGAAGAGTACGAC 58.548 52.381 0.00 0.00 0.00 4.34
2185 4245 2.360475 GGGGCTCAAGGTGTGCTC 60.360 66.667 2.71 0.00 36.68 4.26
2350 4410 1.542915 CAGCTTGATGTCCAAACCCAG 59.457 52.381 0.00 0.00 33.76 4.45
2407 4467 1.529010 CCCCTGCTGCACAAGAACA 60.529 57.895 0.00 0.00 0.00 3.18
2450 4582 1.642037 CTGCCTCTGATGCACAACCG 61.642 60.000 3.38 0.00 34.46 4.44
2475 4607 2.742372 CGCCCAAGGTTGACGAGG 60.742 66.667 0.00 0.00 31.94 4.63
2677 4809 2.040939 TGTAGTTGAACAGACGGGGAA 58.959 47.619 0.00 0.00 0.00 3.97
2720 4852 0.957888 GGCTGGCTGGACAGAACTTC 60.958 60.000 7.74 0.00 40.97 3.01
2723 4855 0.756294 TGGCTGGACAGAACTTCGAA 59.244 50.000 3.00 0.00 0.00 3.71
2767 4899 6.253746 CCTCGTTTGATGATTTGAAGCTTAG 58.746 40.000 0.00 0.00 0.00 2.18
2783 4915 2.031069 GCTTAGTCGCGATACCATCTCA 60.031 50.000 14.06 0.00 0.00 3.27
2793 4930 3.607310 CGATACCATCTCAGTCGTGCTAC 60.607 52.174 0.00 0.00 0.00 3.58
2934 5075 2.860446 TAGTCCCACCTCCCACGGT 61.860 63.158 0.00 0.00 37.93 4.83
3086 5256 1.620822 ACCTACGACGGTTAACCAGT 58.379 50.000 24.14 20.78 31.94 4.00
3177 5365 2.362369 CCATCCTGGTCGAGGCAGT 61.362 63.158 0.00 0.00 42.47 4.40
3689 5922 1.105167 TCACGTCCGACCTCACAACT 61.105 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.946768 CATGGGTATGTTACTTGCCCG 59.053 52.381 16.87 3.22 42.10 6.13
1 2 2.949644 GTCATGGGTATGTTACTTGCCC 59.050 50.000 15.58 15.58 39.73 5.36
3 4 5.393027 CCTTTGTCATGGGTATGTTACTTGC 60.393 44.000 0.00 0.00 35.73 4.01
4 5 5.943416 TCCTTTGTCATGGGTATGTTACTTG 59.057 40.000 0.00 0.00 35.73 3.16
7 8 6.827586 TTTCCTTTGTCATGGGTATGTTAC 57.172 37.500 0.00 0.00 35.73 2.50
8 9 8.962679 GTTATTTCCTTTGTCATGGGTATGTTA 58.037 33.333 0.00 0.00 35.73 2.41
9 10 7.362574 CGTTATTTCCTTTGTCATGGGTATGTT 60.363 37.037 0.00 0.00 35.73 2.71
10 11 6.094881 CGTTATTTCCTTTGTCATGGGTATGT 59.905 38.462 0.00 0.00 35.73 2.29
11 12 6.094881 ACGTTATTTCCTTTGTCATGGGTATG 59.905 38.462 0.00 0.00 35.57 2.39
12 13 6.184789 ACGTTATTTCCTTTGTCATGGGTAT 58.815 36.000 0.00 0.00 0.00 2.73
13 14 5.562635 ACGTTATTTCCTTTGTCATGGGTA 58.437 37.500 0.00 0.00 0.00 3.69
14 15 4.403734 ACGTTATTTCCTTTGTCATGGGT 58.596 39.130 0.00 0.00 0.00 4.51
15 16 6.094881 ACATACGTTATTTCCTTTGTCATGGG 59.905 38.462 0.00 0.00 0.00 4.00
16 17 7.083875 ACATACGTTATTTCCTTTGTCATGG 57.916 36.000 0.00 0.00 0.00 3.66
17 18 8.020819 ACAACATACGTTATTTCCTTTGTCATG 58.979 33.333 0.00 0.00 32.75 3.07
18 19 8.106247 ACAACATACGTTATTTCCTTTGTCAT 57.894 30.769 0.00 0.00 32.75 3.06
19 20 7.226918 TGACAACATACGTTATTTCCTTTGTCA 59.773 33.333 8.78 8.78 44.81 3.58
20 21 7.577979 TGACAACATACGTTATTTCCTTTGTC 58.422 34.615 0.00 0.00 40.34 3.18
21 22 7.499321 TGACAACATACGTTATTTCCTTTGT 57.501 32.000 0.00 0.00 32.75 2.83
24 25 8.385111 CGTTATGACAACATACGTTATTTCCTT 58.615 33.333 0.00 0.00 38.50 3.36
25 26 7.010738 CCGTTATGACAACATACGTTATTTCCT 59.989 37.037 0.00 0.00 38.50 3.36
26 27 7.121272 CCGTTATGACAACATACGTTATTTCC 58.879 38.462 0.00 0.00 38.50 3.13
27 28 7.678226 ACCGTTATGACAACATACGTTATTTC 58.322 34.615 0.00 0.00 38.50 2.17
28 29 7.599630 ACCGTTATGACAACATACGTTATTT 57.400 32.000 0.00 0.00 38.50 1.40
29 30 7.463119 CGAACCGTTATGACAACATACGTTATT 60.463 37.037 0.00 0.00 38.50 1.40
30 31 6.020440 CGAACCGTTATGACAACATACGTTAT 60.020 38.462 0.00 0.00 38.50 1.89
31 32 5.285845 CGAACCGTTATGACAACATACGTTA 59.714 40.000 0.00 0.00 38.50 3.18
32 33 4.090354 CGAACCGTTATGACAACATACGTT 59.910 41.667 0.00 0.00 38.50 3.99
33 34 3.609373 CGAACCGTTATGACAACATACGT 59.391 43.478 0.00 0.00 38.50 3.57
34 35 3.853103 TCGAACCGTTATGACAACATACG 59.147 43.478 0.00 0.00 38.50 3.06
35 36 4.032104 GGTCGAACCGTTATGACAACATAC 59.968 45.833 14.67 0.00 38.50 2.39
36 37 4.175516 GGTCGAACCGTTATGACAACATA 58.824 43.478 14.67 0.00 37.87 2.29
37 38 2.997986 GGTCGAACCGTTATGACAACAT 59.002 45.455 14.67 0.00 40.16 2.71
38 39 2.406130 GGTCGAACCGTTATGACAACA 58.594 47.619 14.67 0.00 33.04 3.33
50 51 3.729716 CGAAGATCTTTATCGGTCGAACC 59.270 47.826 9.87 0.00 42.42 3.62
51 52 4.349501 ACGAAGATCTTTATCGGTCGAAC 58.650 43.478 17.21 0.00 42.42 3.95
52 53 4.627611 ACGAAGATCTTTATCGGTCGAA 57.372 40.909 17.21 0.00 42.42 3.71
53 54 5.052481 TCTACGAAGATCTTTATCGGTCGA 58.948 41.667 17.21 8.90 42.42 4.20
54 55 5.340010 TCTACGAAGATCTTTATCGGTCG 57.660 43.478 17.21 13.10 43.94 4.79
55 56 9.279904 CATATTCTACGAAGATCTTTATCGGTC 57.720 37.037 17.21 0.00 40.71 4.79
56 57 8.794553 ACATATTCTACGAAGATCTTTATCGGT 58.205 33.333 17.21 9.99 40.71 4.69
63 64 8.732531 GGCTACTACATATTCTACGAAGATCTT 58.267 37.037 7.95 7.95 0.00 2.40
64 65 7.883833 TGGCTACTACATATTCTACGAAGATCT 59.116 37.037 0.00 0.00 0.00 2.75
65 66 8.041829 TGGCTACTACATATTCTACGAAGATC 57.958 38.462 0.00 0.00 0.00 2.75
66 67 7.997773 TGGCTACTACATATTCTACGAAGAT 57.002 36.000 0.00 0.00 0.00 2.40
67 68 7.812690 TTGGCTACTACATATTCTACGAAGA 57.187 36.000 0.00 0.00 0.00 2.87
70 71 9.457436 TCATATTGGCTACTACATATTCTACGA 57.543 33.333 0.00 0.00 0.00 3.43
71 72 9.723447 CTCATATTGGCTACTACATATTCTACG 57.277 37.037 0.00 0.00 0.00 3.51
72 73 9.522804 GCTCATATTGGCTACTACATATTCTAC 57.477 37.037 0.00 0.00 0.00 2.59
73 74 9.255029 TGCTCATATTGGCTACTACATATTCTA 57.745 33.333 0.00 0.00 0.00 2.10
74 75 8.138928 TGCTCATATTGGCTACTACATATTCT 57.861 34.615 0.00 0.00 0.00 2.40
75 76 8.954950 ATGCTCATATTGGCTACTACATATTC 57.045 34.615 0.00 0.00 0.00 1.75
76 77 7.708322 CGATGCTCATATTGGCTACTACATATT 59.292 37.037 0.00 0.00 0.00 1.28
77 78 7.068716 TCGATGCTCATATTGGCTACTACATAT 59.931 37.037 0.00 0.00 0.00 1.78
78 79 6.377146 TCGATGCTCATATTGGCTACTACATA 59.623 38.462 0.00 0.00 0.00 2.29
79 80 5.185828 TCGATGCTCATATTGGCTACTACAT 59.814 40.000 0.00 0.00 0.00 2.29
80 81 4.522789 TCGATGCTCATATTGGCTACTACA 59.477 41.667 0.00 0.00 0.00 2.74
81 82 5.060662 TCGATGCTCATATTGGCTACTAC 57.939 43.478 0.00 0.00 0.00 2.73
82 83 4.158579 CCTCGATGCTCATATTGGCTACTA 59.841 45.833 0.00 0.00 0.00 1.82
83 84 3.056250 CCTCGATGCTCATATTGGCTACT 60.056 47.826 0.00 0.00 0.00 2.57
84 85 3.257393 CCTCGATGCTCATATTGGCTAC 58.743 50.000 0.00 0.00 0.00 3.58
85 86 2.899900 ACCTCGATGCTCATATTGGCTA 59.100 45.455 0.00 0.00 0.00 3.93
86 87 1.696336 ACCTCGATGCTCATATTGGCT 59.304 47.619 0.00 0.00 0.00 4.75
87 88 2.175878 ACCTCGATGCTCATATTGGC 57.824 50.000 0.00 0.00 0.00 4.52
88 89 3.070018 GGAACCTCGATGCTCATATTGG 58.930 50.000 0.00 0.00 0.00 3.16
89 90 2.733552 CGGAACCTCGATGCTCATATTG 59.266 50.000 0.00 0.00 0.00 1.90
90 91 2.868044 GCGGAACCTCGATGCTCATATT 60.868 50.000 0.00 0.00 0.00 1.28
91 92 1.337260 GCGGAACCTCGATGCTCATAT 60.337 52.381 0.00 0.00 0.00 1.78
92 93 0.032130 GCGGAACCTCGATGCTCATA 59.968 55.000 0.00 0.00 0.00 2.15
93 94 1.227380 GCGGAACCTCGATGCTCAT 60.227 57.895 0.00 0.00 0.00 2.90
94 95 1.035385 TAGCGGAACCTCGATGCTCA 61.035 55.000 0.00 0.00 37.12 4.26
95 96 0.315568 ATAGCGGAACCTCGATGCTC 59.684 55.000 0.00 0.00 37.12 4.26
96 97 0.753262 AATAGCGGAACCTCGATGCT 59.247 50.000 0.00 0.00 39.59 3.79
97 98 0.861837 CAATAGCGGAACCTCGATGC 59.138 55.000 0.00 0.00 0.00 3.91
98 99 1.202533 ACCAATAGCGGAACCTCGATG 60.203 52.381 0.00 0.00 0.00 3.84
99 100 1.120530 ACCAATAGCGGAACCTCGAT 58.879 50.000 0.00 0.00 0.00 3.59
100 101 0.899720 AACCAATAGCGGAACCTCGA 59.100 50.000 0.00 0.00 0.00 4.04
101 102 2.589798 TAACCAATAGCGGAACCTCG 57.410 50.000 0.00 0.00 0.00 4.63
102 103 4.272748 GTCAATAACCAATAGCGGAACCTC 59.727 45.833 0.00 0.00 0.00 3.85
103 104 4.196971 GTCAATAACCAATAGCGGAACCT 58.803 43.478 0.00 0.00 0.00 3.50
104 105 4.547406 GTCAATAACCAATAGCGGAACC 57.453 45.455 0.00 0.00 0.00 3.62
116 117 1.553704 ACACCTCTCCGGTCAATAACC 59.446 52.381 0.00 0.00 44.93 2.85
117 118 2.496470 AGACACCTCTCCGGTCAATAAC 59.504 50.000 0.00 0.00 44.93 1.89
118 119 2.758979 GAGACACCTCTCCGGTCAATAA 59.241 50.000 0.00 0.00 44.93 1.40
119 120 2.376109 GAGACACCTCTCCGGTCAATA 58.624 52.381 0.00 0.00 44.93 1.90
120 121 1.187087 GAGACACCTCTCCGGTCAAT 58.813 55.000 0.00 0.00 44.93 2.57
121 122 1.241990 CGAGACACCTCTCCGGTCAA 61.242 60.000 0.00 0.00 44.93 3.18
122 123 1.674651 CGAGACACCTCTCCGGTCA 60.675 63.158 0.00 0.00 44.93 4.02
123 124 2.408241 CCGAGACACCTCTCCGGTC 61.408 68.421 0.00 0.00 44.93 4.79
125 126 2.361357 ACCGAGACACCTCTCCGG 60.361 66.667 0.00 0.00 40.10 5.14
126 127 1.032657 ATGACCGAGACACCTCTCCG 61.033 60.000 0.00 0.00 40.10 4.63
127 128 0.457851 CATGACCGAGACACCTCTCC 59.542 60.000 0.00 0.00 40.10 3.71
128 129 1.133407 GACATGACCGAGACACCTCTC 59.867 57.143 0.00 0.00 39.86 3.20
129 130 1.178276 GACATGACCGAGACACCTCT 58.822 55.000 0.00 0.00 37.28 3.69
130 131 1.178276 AGACATGACCGAGACACCTC 58.822 55.000 0.00 0.00 36.08 3.85
131 132 2.093106 GTAGACATGACCGAGACACCT 58.907 52.381 0.00 0.00 0.00 4.00
132 133 1.816835 TGTAGACATGACCGAGACACC 59.183 52.381 0.00 0.00 0.00 4.16
133 134 3.784701 ATGTAGACATGACCGAGACAC 57.215 47.619 0.00 0.00 34.83 3.67
134 135 4.524053 ACTATGTAGACATGACCGAGACA 58.476 43.478 0.00 0.00 37.15 3.41
135 136 5.297278 AGAACTATGTAGACATGACCGAGAC 59.703 44.000 0.00 0.00 37.15 3.36
136 137 5.437946 AGAACTATGTAGACATGACCGAGA 58.562 41.667 0.00 0.00 37.15 4.04
137 138 5.559225 CGAGAACTATGTAGACATGACCGAG 60.559 48.000 0.00 0.00 37.15 4.63
138 139 4.272748 CGAGAACTATGTAGACATGACCGA 59.727 45.833 0.00 0.00 37.15 4.69
139 140 4.272748 TCGAGAACTATGTAGACATGACCG 59.727 45.833 0.00 1.67 37.15 4.79
140 141 5.752892 TCGAGAACTATGTAGACATGACC 57.247 43.478 0.00 0.00 37.15 4.02
141 142 5.972382 GGTTCGAGAACTATGTAGACATGAC 59.028 44.000 14.62 0.00 40.94 3.06
142 143 5.067413 GGGTTCGAGAACTATGTAGACATGA 59.933 44.000 14.62 0.00 40.94 3.07
143 144 5.282510 GGGTTCGAGAACTATGTAGACATG 58.717 45.833 14.62 0.00 40.94 3.21
144 145 4.036498 CGGGTTCGAGAACTATGTAGACAT 59.964 45.833 14.62 0.08 40.94 3.06
145 146 3.376234 CGGGTTCGAGAACTATGTAGACA 59.624 47.826 14.62 0.00 40.94 3.41
146 147 3.376546 ACGGGTTCGAGAACTATGTAGAC 59.623 47.826 14.62 0.00 40.94 2.59
147 148 3.614092 ACGGGTTCGAGAACTATGTAGA 58.386 45.455 14.62 0.00 40.94 2.59
148 149 4.024218 CCTACGGGTTCGAGAACTATGTAG 60.024 50.000 21.42 21.42 40.94 2.74
149 150 3.879295 CCTACGGGTTCGAGAACTATGTA 59.121 47.826 14.62 12.83 40.94 2.29
150 151 2.686915 CCTACGGGTTCGAGAACTATGT 59.313 50.000 14.62 12.47 40.94 2.29
151 152 2.034305 CCCTACGGGTTCGAGAACTATG 59.966 54.545 14.62 8.07 40.94 2.23
152 153 2.305009 CCCTACGGGTTCGAGAACTAT 58.695 52.381 14.62 4.68 40.94 2.12
153 154 1.755179 CCCTACGGGTTCGAGAACTA 58.245 55.000 14.62 0.70 40.94 2.24
154 155 2.576298 CCCTACGGGTTCGAGAACT 58.424 57.895 14.62 0.00 40.94 3.01
166 167 2.546645 TTAAGCGTGCGGACCCTACG 62.547 60.000 0.00 10.04 40.52 3.51
167 168 1.080435 GTTAAGCGTGCGGACCCTAC 61.080 60.000 0.00 0.00 0.00 3.18
168 169 1.216178 GTTAAGCGTGCGGACCCTA 59.784 57.895 0.00 0.00 0.00 3.53
169 170 2.047560 GTTAAGCGTGCGGACCCT 60.048 61.111 0.00 0.00 0.00 4.34
170 171 1.303091 AATGTTAAGCGTGCGGACCC 61.303 55.000 0.00 0.00 0.00 4.46
171 172 1.326548 CTAATGTTAAGCGTGCGGACC 59.673 52.381 0.00 0.00 0.00 4.46
172 173 2.264813 TCTAATGTTAAGCGTGCGGAC 58.735 47.619 0.00 0.00 0.00 4.79
173 174 2.658373 TCTAATGTTAAGCGTGCGGA 57.342 45.000 0.00 0.00 0.00 5.54
174 175 2.863740 TCATCTAATGTTAAGCGTGCGG 59.136 45.455 0.00 0.00 0.00 5.69
175 176 3.599339 CGTCATCTAATGTTAAGCGTGCG 60.599 47.826 0.00 0.00 0.00 5.34
176 177 3.841372 GCGTCATCTAATGTTAAGCGTGC 60.841 47.826 0.00 0.00 0.00 5.34
177 178 3.551890 AGCGTCATCTAATGTTAAGCGTG 59.448 43.478 0.00 0.00 0.00 5.34
178 179 3.782046 AGCGTCATCTAATGTTAAGCGT 58.218 40.909 0.00 0.00 0.00 5.07
179 180 5.212934 TCTAGCGTCATCTAATGTTAAGCG 58.787 41.667 0.00 0.00 0.00 4.68
180 181 7.644986 AATCTAGCGTCATCTAATGTTAAGC 57.355 36.000 0.00 0.00 0.00 3.09
181 182 9.900710 ACTAATCTAGCGTCATCTAATGTTAAG 57.099 33.333 0.00 0.00 0.00 1.85
185 186 9.847706 CAATACTAATCTAGCGTCATCTAATGT 57.152 33.333 0.00 0.00 0.00 2.71
186 187 9.295214 CCAATACTAATCTAGCGTCATCTAATG 57.705 37.037 0.00 0.00 0.00 1.90
187 188 8.470805 CCCAATACTAATCTAGCGTCATCTAAT 58.529 37.037 0.00 0.00 0.00 1.73
188 189 7.668469 TCCCAATACTAATCTAGCGTCATCTAA 59.332 37.037 0.00 0.00 0.00 2.10
189 190 7.173032 TCCCAATACTAATCTAGCGTCATCTA 58.827 38.462 0.00 0.00 0.00 1.98
190 191 6.010850 TCCCAATACTAATCTAGCGTCATCT 58.989 40.000 0.00 0.00 0.00 2.90
191 192 6.268825 TCCCAATACTAATCTAGCGTCATC 57.731 41.667 0.00 0.00 0.00 2.92
192 193 6.859112 ATCCCAATACTAATCTAGCGTCAT 57.141 37.500 0.00 0.00 0.00 3.06
193 194 7.956328 ATATCCCAATACTAATCTAGCGTCA 57.044 36.000 0.00 0.00 0.00 4.35
194 195 9.088512 CAAATATCCCAATACTAATCTAGCGTC 57.911 37.037 0.00 0.00 0.00 5.19
195 196 8.812972 TCAAATATCCCAATACTAATCTAGCGT 58.187 33.333 0.00 0.00 0.00 5.07
196 197 9.823647 ATCAAATATCCCAATACTAATCTAGCG 57.176 33.333 0.00 0.00 0.00 4.26
202 203 9.745018 CCACTCATCAAATATCCCAATACTAAT 57.255 33.333 0.00 0.00 0.00 1.73
203 204 8.723365 ACCACTCATCAAATATCCCAATACTAA 58.277 33.333 0.00 0.00 0.00 2.24
204 205 8.275187 ACCACTCATCAAATATCCCAATACTA 57.725 34.615 0.00 0.00 0.00 1.82
205 206 7.154191 ACCACTCATCAAATATCCCAATACT 57.846 36.000 0.00 0.00 0.00 2.12
206 207 8.784043 GTTACCACTCATCAAATATCCCAATAC 58.216 37.037 0.00 0.00 0.00 1.89
207 208 7.659799 CGTTACCACTCATCAAATATCCCAATA 59.340 37.037 0.00 0.00 0.00 1.90
208 209 6.486657 CGTTACCACTCATCAAATATCCCAAT 59.513 38.462 0.00 0.00 0.00 3.16
209 210 5.820423 CGTTACCACTCATCAAATATCCCAA 59.180 40.000 0.00 0.00 0.00 4.12
210 211 5.129650 TCGTTACCACTCATCAAATATCCCA 59.870 40.000 0.00 0.00 0.00 4.37
211 212 5.607477 TCGTTACCACTCATCAAATATCCC 58.393 41.667 0.00 0.00 0.00 3.85
212 213 7.548196 TTTCGTTACCACTCATCAAATATCC 57.452 36.000 0.00 0.00 0.00 2.59
213 214 8.612619 ACATTTCGTTACCACTCATCAAATATC 58.387 33.333 0.00 0.00 0.00 1.63
214 215 8.506168 ACATTTCGTTACCACTCATCAAATAT 57.494 30.769 0.00 0.00 0.00 1.28
215 216 7.915293 ACATTTCGTTACCACTCATCAAATA 57.085 32.000 0.00 0.00 0.00 1.40
216 217 6.817765 ACATTTCGTTACCACTCATCAAAT 57.182 33.333 0.00 0.00 0.00 2.32
217 218 6.038825 ACAACATTTCGTTACCACTCATCAAA 59.961 34.615 0.00 0.00 35.52 2.69
218 219 5.529430 ACAACATTTCGTTACCACTCATCAA 59.471 36.000 0.00 0.00 35.52 2.57
219 220 5.060506 ACAACATTTCGTTACCACTCATCA 58.939 37.500 0.00 0.00 35.52 3.07
220 221 5.607119 ACAACATTTCGTTACCACTCATC 57.393 39.130 0.00 0.00 35.52 2.92
221 222 5.333798 CGAACAACATTTCGTTACCACTCAT 60.334 40.000 0.00 0.00 42.78 2.90
222 223 4.025563 CGAACAACATTTCGTTACCACTCA 60.026 41.667 0.00 0.00 42.78 3.41
223 224 4.451557 CGAACAACATTTCGTTACCACTC 58.548 43.478 0.00 0.00 42.78 3.51
224 225 3.249080 CCGAACAACATTTCGTTACCACT 59.751 43.478 4.71 0.00 45.64 4.00
225 226 3.248125 TCCGAACAACATTTCGTTACCAC 59.752 43.478 4.71 0.00 45.64 4.16
226 227 3.464907 TCCGAACAACATTTCGTTACCA 58.535 40.909 4.71 0.00 45.64 3.25
227 228 3.495753 ACTCCGAACAACATTTCGTTACC 59.504 43.478 4.71 0.00 45.64 2.85
228 229 4.376717 GGACTCCGAACAACATTTCGTTAC 60.377 45.833 4.71 0.00 45.64 2.50
229 230 3.742369 GGACTCCGAACAACATTTCGTTA 59.258 43.478 4.71 0.00 45.64 3.18
230 231 2.546789 GGACTCCGAACAACATTTCGTT 59.453 45.455 4.71 0.00 45.64 3.85
231 232 2.140717 GGACTCCGAACAACATTTCGT 58.859 47.619 4.71 0.00 45.64 3.85
232 233 1.463444 GGGACTCCGAACAACATTTCG 59.537 52.381 0.00 0.00 46.46 3.46
245 246 2.356992 GGATCTCATCCGGGACTCC 58.643 63.158 0.00 0.00 40.13 3.85
254 255 1.268794 CGTGACGTCTGGGATCTCATC 60.269 57.143 17.92 0.00 0.00 2.92
255 256 0.741326 CGTGACGTCTGGGATCTCAT 59.259 55.000 17.92 0.00 0.00 2.90
256 257 0.322187 TCGTGACGTCTGGGATCTCA 60.322 55.000 17.92 0.00 0.00 3.27
257 258 0.378962 CTCGTGACGTCTGGGATCTC 59.621 60.000 17.92 0.00 0.00 2.75
258 259 1.032657 CCTCGTGACGTCTGGGATCT 61.033 60.000 17.92 0.00 0.00 2.75
259 260 1.030488 TCCTCGTGACGTCTGGGATC 61.030 60.000 17.92 0.00 0.00 3.36
260 261 1.001269 TCCTCGTGACGTCTGGGAT 60.001 57.895 17.92 0.00 0.00 3.85
261 262 1.674651 CTCCTCGTGACGTCTGGGA 60.675 63.158 17.92 15.93 0.00 4.37
262 263 1.924320 GACTCCTCGTGACGTCTGGG 61.924 65.000 17.92 12.73 0.00 4.45
263 264 0.956410 AGACTCCTCGTGACGTCTGG 60.956 60.000 17.92 13.13 33.21 3.86
264 265 0.444651 GAGACTCCTCGTGACGTCTG 59.555 60.000 17.92 9.54 34.02 3.51
265 266 0.035036 TGAGACTCCTCGTGACGTCT 59.965 55.000 17.92 0.00 42.33 4.18
266 267 0.444651 CTGAGACTCCTCGTGACGTC 59.555 60.000 9.11 9.11 42.33 4.34
267 268 0.035036 TCTGAGACTCCTCGTGACGT 59.965 55.000 4.40 0.00 42.33 4.34
268 269 1.157585 TTCTGAGACTCCTCGTGACG 58.842 55.000 0.00 0.00 42.33 4.35
269 270 2.159310 CCATTCTGAGACTCCTCGTGAC 60.159 54.545 0.00 0.00 42.33 3.67
270 271 2.095461 CCATTCTGAGACTCCTCGTGA 58.905 52.381 0.00 0.00 42.33 4.35
271 272 1.821753 ACCATTCTGAGACTCCTCGTG 59.178 52.381 0.00 0.00 42.33 4.35
272 273 2.096248 GACCATTCTGAGACTCCTCGT 58.904 52.381 0.00 0.00 42.33 4.18
273 274 1.064803 CGACCATTCTGAGACTCCTCG 59.935 57.143 0.00 0.00 42.33 4.63
274 275 2.357637 CTCGACCATTCTGAGACTCCTC 59.642 54.545 0.00 0.00 39.86 3.71
275 276 2.025793 TCTCGACCATTCTGAGACTCCT 60.026 50.000 0.00 0.00 34.00 3.69
276 277 2.357637 CTCTCGACCATTCTGAGACTCC 59.642 54.545 0.00 0.00 35.11 3.85
277 278 2.357637 CCTCTCGACCATTCTGAGACTC 59.642 54.545 0.00 0.00 35.11 3.36
278 279 2.291282 ACCTCTCGACCATTCTGAGACT 60.291 50.000 0.00 0.00 35.11 3.24
279 280 2.096248 ACCTCTCGACCATTCTGAGAC 58.904 52.381 0.00 0.00 35.11 3.36
280 281 2.516227 ACCTCTCGACCATTCTGAGA 57.484 50.000 0.00 0.00 37.24 3.27
281 282 4.399618 TCTTTACCTCTCGACCATTCTGAG 59.600 45.833 0.00 0.00 0.00 3.35
282 283 4.341487 TCTTTACCTCTCGACCATTCTGA 58.659 43.478 0.00 0.00 0.00 3.27
283 284 4.720649 TCTTTACCTCTCGACCATTCTG 57.279 45.455 0.00 0.00 0.00 3.02
284 285 5.941555 AATCTTTACCTCTCGACCATTCT 57.058 39.130 0.00 0.00 0.00 2.40
285 286 9.930693 ATATAAATCTTTACCTCTCGACCATTC 57.069 33.333 0.00 0.00 0.00 2.67
289 290 9.804758 CCATATATAAATCTTTACCTCTCGACC 57.195 37.037 0.00 0.00 0.00 4.79
290 291 9.804758 CCCATATATAAATCTTTACCTCTCGAC 57.195 37.037 0.00 0.00 0.00 4.20
291 292 9.763837 TCCCATATATAAATCTTTACCTCTCGA 57.236 33.333 0.00 0.00 0.00 4.04
310 311 9.284968 CGAAACCTAAAATATGACTTCCCATAT 57.715 33.333 0.00 0.00 40.41 1.78
311 312 7.717875 CCGAAACCTAAAATATGACTTCCCATA 59.282 37.037 0.00 0.00 33.98 2.74
312 313 6.546034 CCGAAACCTAAAATATGACTTCCCAT 59.454 38.462 0.00 0.00 0.00 4.00
313 314 5.883673 CCGAAACCTAAAATATGACTTCCCA 59.116 40.000 0.00 0.00 0.00 4.37
314 315 6.117488 TCCGAAACCTAAAATATGACTTCCC 58.883 40.000 0.00 0.00 0.00 3.97
315 316 7.619964 TTCCGAAACCTAAAATATGACTTCC 57.380 36.000 0.00 0.00 0.00 3.46
316 317 9.902196 TTTTTCCGAAACCTAAAATATGACTTC 57.098 29.630 0.00 0.00 0.00 3.01
317 318 9.908152 CTTTTTCCGAAACCTAAAATATGACTT 57.092 29.630 0.00 0.00 0.00 3.01
318 319 8.520351 CCTTTTTCCGAAACCTAAAATATGACT 58.480 33.333 0.00 0.00 0.00 3.41
319 320 8.301720 ACCTTTTTCCGAAACCTAAAATATGAC 58.698 33.333 0.00 0.00 0.00 3.06
320 321 8.301002 CACCTTTTTCCGAAACCTAAAATATGA 58.699 33.333 0.00 0.00 0.00 2.15
321 322 7.062956 GCACCTTTTTCCGAAACCTAAAATATG 59.937 37.037 0.00 0.00 0.00 1.78
322 323 7.094631 GCACCTTTTTCCGAAACCTAAAATAT 58.905 34.615 0.00 0.00 0.00 1.28
323 324 6.040616 TGCACCTTTTTCCGAAACCTAAAATA 59.959 34.615 0.00 0.00 0.00 1.40
324 325 5.163395 TGCACCTTTTTCCGAAACCTAAAAT 60.163 36.000 0.00 0.00 0.00 1.82
325 326 4.159879 TGCACCTTTTTCCGAAACCTAAAA 59.840 37.500 0.00 0.00 0.00 1.52
326 327 3.700038 TGCACCTTTTTCCGAAACCTAAA 59.300 39.130 0.00 0.00 0.00 1.85
327 328 3.288964 TGCACCTTTTTCCGAAACCTAA 58.711 40.909 0.00 0.00 0.00 2.69
328 329 2.882137 CTGCACCTTTTTCCGAAACCTA 59.118 45.455 0.00 0.00 0.00 3.08
329 330 1.681264 CTGCACCTTTTTCCGAAACCT 59.319 47.619 0.00 0.00 0.00 3.50
330 331 1.407618 ACTGCACCTTTTTCCGAAACC 59.592 47.619 0.00 0.00 0.00 3.27
331 332 2.863401 ACTGCACCTTTTTCCGAAAC 57.137 45.000 0.00 0.00 0.00 2.78
332 333 3.878160 AAACTGCACCTTTTTCCGAAA 57.122 38.095 0.00 0.00 0.00 3.46
333 334 3.878160 AAAACTGCACCTTTTTCCGAA 57.122 38.095 0.00 0.00 0.00 4.30
334 335 3.878160 AAAAACTGCACCTTTTTCCGA 57.122 38.095 4.82 0.00 0.00 4.55
351 352 4.456566 GCTTCCCGGTACAATACTGAAAAA 59.543 41.667 0.00 0.00 37.22 1.94
352 353 4.004982 GCTTCCCGGTACAATACTGAAAA 58.995 43.478 0.00 0.00 37.22 2.29
353 354 3.262405 AGCTTCCCGGTACAATACTGAAA 59.738 43.478 0.00 0.00 37.22 2.69
354 355 2.835764 AGCTTCCCGGTACAATACTGAA 59.164 45.455 0.00 0.00 37.22 3.02
355 356 2.463752 AGCTTCCCGGTACAATACTGA 58.536 47.619 0.00 0.00 37.22 3.41
356 357 2.981859 AGCTTCCCGGTACAATACTG 57.018 50.000 0.00 0.00 34.81 2.74
357 358 2.169978 GGAAGCTTCCCGGTACAATACT 59.830 50.000 31.91 0.00 41.62 2.12
358 359 2.558378 GGAAGCTTCCCGGTACAATAC 58.442 52.381 31.91 4.77 41.62 1.89
359 360 2.994186 GGAAGCTTCCCGGTACAATA 57.006 50.000 31.91 0.00 41.62 1.90
360 361 3.875865 GGAAGCTTCCCGGTACAAT 57.124 52.632 31.91 0.00 41.62 2.71
368 369 4.216429 TGGAACCTTCTGGAAGCTTCCC 62.216 54.545 36.75 21.96 45.80 3.97
369 370 1.073923 TGGAACCTTCTGGAAGCTTCC 59.926 52.381 34.48 34.48 46.22 3.46
370 371 2.568623 TGGAACCTTCTGGAAGCTTC 57.431 50.000 18.54 18.54 37.11 3.86
371 372 3.225940 CTTTGGAACCTTCTGGAAGCTT 58.774 45.455 0.00 0.00 37.11 3.74
372 373 2.489802 CCTTTGGAACCTTCTGGAAGCT 60.490 50.000 4.93 0.00 37.11 3.74
373 374 1.889170 CCTTTGGAACCTTCTGGAAGC 59.111 52.381 4.93 0.00 37.11 3.86
374 375 3.508845 TCCTTTGGAACCTTCTGGAAG 57.491 47.619 3.57 3.57 38.14 3.46
375 376 4.407365 GAATCCTTTGGAACCTTCTGGAA 58.593 43.478 0.00 0.00 34.34 3.53
376 377 3.245264 GGAATCCTTTGGAACCTTCTGGA 60.245 47.826 0.00 0.00 34.34 3.86
377 378 3.092301 GGAATCCTTTGGAACCTTCTGG 58.908 50.000 0.00 0.00 34.34 3.86
378 379 2.749621 CGGAATCCTTTGGAACCTTCTG 59.250 50.000 0.00 3.49 34.34 3.02
379 380 2.290960 CCGGAATCCTTTGGAACCTTCT 60.291 50.000 0.00 0.00 34.34 2.85
380 381 2.092323 CCGGAATCCTTTGGAACCTTC 58.908 52.381 0.00 2.30 34.34 3.46
381 382 1.708551 TCCGGAATCCTTTGGAACCTT 59.291 47.619 0.00 0.00 34.34 3.50
382 383 1.282157 CTCCGGAATCCTTTGGAACCT 59.718 52.381 5.23 0.00 34.34 3.50
383 384 1.682087 CCTCCGGAATCCTTTGGAACC 60.682 57.143 5.23 0.00 34.34 3.62
384 385 1.682087 CCCTCCGGAATCCTTTGGAAC 60.682 57.143 5.23 0.00 34.34 3.62
385 386 0.623723 CCCTCCGGAATCCTTTGGAA 59.376 55.000 5.23 0.00 34.34 3.53
386 387 1.279025 CCCCTCCGGAATCCTTTGGA 61.279 60.000 5.23 0.00 35.55 3.53
387 388 1.227383 CCCCTCCGGAATCCTTTGG 59.773 63.158 5.23 0.24 0.00 3.28
388 389 0.107165 GACCCCTCCGGAATCCTTTG 60.107 60.000 5.23 0.00 34.64 2.77
389 390 1.279749 GGACCCCTCCGGAATCCTTT 61.280 60.000 5.23 0.00 33.45 3.11
390 391 1.693103 GGACCCCTCCGGAATCCTT 60.693 63.158 5.23 0.00 33.45 3.36
391 392 2.040779 GGACCCCTCCGGAATCCT 60.041 66.667 5.23 0.00 33.45 3.24
399 400 3.082055 GGACTTCCGGACCCCTCC 61.082 72.222 1.83 1.40 0.00 4.30
400 401 2.284405 TGGACTTCCGGACCCCTC 60.284 66.667 1.83 0.00 39.43 4.30
401 402 2.606826 GTGGACTTCCGGACCCCT 60.607 66.667 1.83 0.00 39.43 4.79
402 403 2.465055 CTTGTGGACTTCCGGACCCC 62.465 65.000 1.83 6.30 39.43 4.95
403 404 1.003718 CTTGTGGACTTCCGGACCC 60.004 63.158 1.83 6.72 39.43 4.46
404 405 0.602905 CACTTGTGGACTTCCGGACC 60.603 60.000 1.83 2.29 39.43 4.46
405 406 0.602905 CCACTTGTGGACTTCCGGAC 60.603 60.000 14.15 0.00 39.43 4.79
406 407 1.752198 CCACTTGTGGACTTCCGGA 59.248 57.895 14.15 0.00 39.43 5.14
407 408 1.302511 CCCACTTGTGGACTTCCGG 60.303 63.158 20.27 0.00 39.43 5.14
408 409 0.179029 AACCCACTTGTGGACTTCCG 60.179 55.000 20.27 5.76 39.43 4.30
409 410 1.133915 TGAACCCACTTGTGGACTTCC 60.134 52.381 20.27 6.15 0.00 3.46
410 411 1.947456 GTGAACCCACTTGTGGACTTC 59.053 52.381 20.27 18.03 40.10 3.01
411 412 1.409661 GGTGAACCCACTTGTGGACTT 60.410 52.381 20.27 11.02 42.77 3.01
412 413 0.182775 GGTGAACCCACTTGTGGACT 59.817 55.000 20.27 7.26 42.77 3.85
413 414 0.106918 TGGTGAACCCACTTGTGGAC 60.107 55.000 20.27 10.43 42.77 4.02
414 415 2.312323 TGGTGAACCCACTTGTGGA 58.688 52.632 20.27 0.00 42.77 4.02
415 416 4.997884 TGGTGAACCCACTTGTGG 57.002 55.556 12.54 12.54 42.77 4.17
425 426 1.250840 GCCCTTGGGTCATGGTGAAC 61.251 60.000 7.61 0.00 32.07 3.18
426 427 1.076549 GCCCTTGGGTCATGGTGAA 59.923 57.895 7.61 0.00 0.00 3.18
427 428 2.763215 GCCCTTGGGTCATGGTGA 59.237 61.111 7.61 0.00 0.00 4.02
428 429 2.751436 CGCCCTTGGGTCATGGTG 60.751 66.667 7.61 0.00 0.00 4.17
429 430 2.933287 TCGCCCTTGGGTCATGGT 60.933 61.111 7.61 0.00 0.00 3.55
430 431 2.124570 CTCGCCCTTGGGTCATGG 60.125 66.667 7.61 0.00 0.00 3.66
431 432 0.322456 TTTCTCGCCCTTGGGTCATG 60.322 55.000 7.61 0.00 0.00 3.07
432 433 0.404040 TTTTCTCGCCCTTGGGTCAT 59.596 50.000 7.61 0.00 0.00 3.06
433 434 0.183971 TTTTTCTCGCCCTTGGGTCA 59.816 50.000 7.61 0.00 0.00 4.02
434 435 0.596577 GTTTTTCTCGCCCTTGGGTC 59.403 55.000 7.61 0.00 0.00 4.46
435 436 1.170290 CGTTTTTCTCGCCCTTGGGT 61.170 55.000 7.61 0.00 0.00 4.51
436 437 1.579429 CGTTTTTCTCGCCCTTGGG 59.421 57.895 0.32 0.32 0.00 4.12
437 438 1.579429 CCGTTTTTCTCGCCCTTGG 59.421 57.895 0.00 0.00 0.00 3.61
438 439 1.081442 GCCGTTTTTCTCGCCCTTG 60.081 57.895 0.00 0.00 0.00 3.61
439 440 1.104577 TTGCCGTTTTTCTCGCCCTT 61.105 50.000 0.00 0.00 0.00 3.95
440 441 1.104577 TTTGCCGTTTTTCTCGCCCT 61.105 50.000 0.00 0.00 0.00 5.19
441 442 0.038618 ATTTGCCGTTTTTCTCGCCC 60.039 50.000 0.00 0.00 0.00 6.13
442 443 1.778334 AATTTGCCGTTTTTCTCGCC 58.222 45.000 0.00 0.00 0.00 5.54
443 444 3.978855 AGTAAATTTGCCGTTTTTCTCGC 59.021 39.130 0.00 0.00 0.00 5.03
444 445 4.143618 GCAGTAAATTTGCCGTTTTTCTCG 60.144 41.667 0.00 0.00 35.54 4.04
445 446 4.982295 AGCAGTAAATTTGCCGTTTTTCTC 59.018 37.500 0.00 0.00 42.48 2.87
446 447 4.944048 AGCAGTAAATTTGCCGTTTTTCT 58.056 34.783 0.00 0.00 42.48 2.52
447 448 4.982295 AGAGCAGTAAATTTGCCGTTTTTC 59.018 37.500 0.00 0.00 42.48 2.29
448 449 4.944048 AGAGCAGTAAATTTGCCGTTTTT 58.056 34.783 0.00 0.00 42.48 1.94
449 450 4.278419 AGAGAGCAGTAAATTTGCCGTTTT 59.722 37.500 0.00 0.00 42.48 2.43
450 451 3.821033 AGAGAGCAGTAAATTTGCCGTTT 59.179 39.130 0.00 0.00 42.48 3.60
451 452 3.412386 AGAGAGCAGTAAATTTGCCGTT 58.588 40.909 0.00 0.00 42.48 4.44
452 453 3.059352 AGAGAGCAGTAAATTTGCCGT 57.941 42.857 0.00 0.00 42.48 5.68
453 454 3.436704 TGAAGAGAGCAGTAAATTTGCCG 59.563 43.478 0.00 0.00 42.48 5.69
454 455 5.376854 TTGAAGAGAGCAGTAAATTTGCC 57.623 39.130 0.00 0.00 42.48 4.52
455 456 6.442112 AGTTTGAAGAGAGCAGTAAATTTGC 58.558 36.000 0.00 0.00 41.83 3.68
456 457 7.869800 AGAGTTTGAAGAGAGCAGTAAATTTG 58.130 34.615 0.00 0.00 0.00 2.32
460 461 8.367911 TCATAAGAGTTTGAAGAGAGCAGTAAA 58.632 33.333 0.00 0.00 0.00 2.01
495 497 4.953940 TTTTTGGCATTCCTACTGCTTT 57.046 36.364 0.00 0.00 39.60 3.51
664 666 7.504924 TGTTCACCATTTTAACAGAAGTAGG 57.495 36.000 0.00 0.00 0.00 3.18
791 794 7.674471 GGCTTTCCCATATTTCAGACTATAC 57.326 40.000 0.00 0.00 0.00 1.47
825 849 1.500512 GGGTTAGTTTGTGCGCGTGA 61.501 55.000 8.43 0.00 0.00 4.35
827 851 2.600475 CGGGTTAGTTTGTGCGCGT 61.600 57.895 8.43 0.00 33.62 6.01
829 853 1.508808 TTCCGGGTTAGTTTGTGCGC 61.509 55.000 0.00 0.00 0.00 6.09
830 854 1.161843 ATTCCGGGTTAGTTTGTGCG 58.838 50.000 0.00 0.00 0.00 5.34
865 889 7.495055 TCCCAGTAATATTCGGAGTTAGTTTC 58.505 38.462 0.00 0.00 0.00 2.78
892 946 2.147958 TCTTCCGCGCAATTGTTAACT 58.852 42.857 8.75 0.00 0.00 2.24
955 1026 2.806244 CCTTCCTTTATATTGGTCGCGG 59.194 50.000 6.13 0.00 0.00 6.46
1051 1131 3.202706 GGGTTTGATCGAGCGGCC 61.203 66.667 0.00 0.00 0.00 6.13
1064 1144 1.991230 CCGTCCTCCATCTTGGGTT 59.009 57.895 0.00 0.00 38.32 4.11
1065 1145 2.670148 GCCGTCCTCCATCTTGGGT 61.670 63.158 0.00 0.00 38.32 4.51
1164 1244 1.572085 CGAGTTGCCAGCCACAGAAG 61.572 60.000 0.00 0.00 0.00 2.85
1166 1246 2.031012 CGAGTTGCCAGCCACAGA 59.969 61.111 0.00 0.00 0.00 3.41
1429 1516 7.212976 GGGTATGTCAGGCATAGATGTATATG 58.787 42.308 0.00 0.00 40.42 1.78
1640 1727 2.571757 GTCGCGGTCATGTCAGGA 59.428 61.111 6.13 0.00 0.00 3.86
1664 1751 0.536724 CGGTGTCACCATCAGATCCA 59.463 55.000 21.91 0.00 38.47 3.41
1758 1848 0.036010 ATCGCCACCTTGTCCTCTTG 60.036 55.000 0.00 0.00 0.00 3.02
1769 1859 0.250513 ACTCTTCTTCCATCGCCACC 59.749 55.000 0.00 0.00 0.00 4.61
1771 1861 1.134367 CGTACTCTTCTTCCATCGCCA 59.866 52.381 0.00 0.00 0.00 5.69
1788 1878 1.131693 CTGCATGTCACCGTAGTCGTA 59.868 52.381 0.00 0.00 35.01 3.43
1793 1883 2.167219 CGCCTGCATGTCACCGTAG 61.167 63.158 0.00 0.00 0.00 3.51
1989 4049 4.605967 CGCGTGTGCTTTGGCGTT 62.606 61.111 0.00 0.00 43.36 4.84
2021 4081 0.250727 GTAGGTTCACCAGCAGCCAA 60.251 55.000 0.00 0.00 38.89 4.52
2123 4183 5.233083 TCTCCAGAAGCAAGAAGATGAAA 57.767 39.130 0.00 0.00 0.00 2.69
2185 4245 6.762333 TGATCATGATGGACATTGTAGTAGG 58.238 40.000 14.30 0.00 37.07 3.18
2338 4398 1.913419 GGACTATCCTGGGTTTGGACA 59.087 52.381 0.00 0.00 36.30 4.02
2720 4852 1.442857 AACGTCGAGCAGCTCTTCG 60.443 57.895 24.53 24.53 33.42 3.79
2723 4855 2.259818 CCAACGTCGAGCAGCTCT 59.740 61.111 20.39 0.00 0.00 4.09
2767 4899 1.660614 CGACTGAGATGGTATCGCGAC 60.661 57.143 12.93 0.00 31.20 5.19
2783 4915 6.512342 AAAGACTAAGTATGTAGCACGACT 57.488 37.500 0.00 0.00 0.00 4.18
2862 5003 8.937207 TGGGTAATTAGGAGTAGAGATACTTC 57.063 38.462 0.00 0.00 0.00 3.01
2915 5056 2.356780 CCGTGGGAGGTGGGACTAC 61.357 68.421 0.00 0.00 0.00 2.73
3086 5256 0.112606 AGGGAGAACAGGACTCGTCA 59.887 55.000 0.00 0.00 35.49 4.35
3126 5304 4.168291 GAGGGCAGCGAAGGGAGG 62.168 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.